Citrus Sinensis ID: 012321
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | 2.2.26 [Sep-21-2011] | |||||||
| P55217 | 563 | Cystathionine gamma-synth | yes | no | 0.688 | 0.570 | 0.835 | 1e-160 | |
| A2RM21 | 380 | Cystathionine beta-lyase | yes | no | 0.615 | 0.755 | 0.397 | 1e-56 | |
| P0A4K2 | 380 | Cystathionine beta-lyase | yes | no | 0.615 | 0.755 | 0.397 | 1e-56 | |
| P0C2T9 | 380 | Cystathionine beta-lyase | N/A | no | 0.630 | 0.773 | 0.394 | 1e-55 | |
| P24601 | 319 | Probable cystathionine ga | no | no | 0.626 | 0.915 | 0.370 | 2e-55 | |
| O05394 | 379 | Cystathionine gamma-lyase | yes | no | 0.626 | 0.770 | 0.364 | 3e-55 | |
| Q1M0P5 | 380 | Cystathionine gamma-synth | yes | no | 0.624 | 0.765 | 0.371 | 9e-54 | |
| P56069 | 380 | Cystathionine gamma-synth | yes | no | 0.624 | 0.765 | 0.371 | 1e-53 | |
| P55218 | 403 | O-succinylhomoserine sulf | yes | no | 0.553 | 0.640 | 0.393 | 3e-52 | |
| P66875 | 388 | Cystathionine gamma-synth | yes | no | 0.650 | 0.780 | 0.375 | 1e-51 |
| >sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/323 (83%), Positives = 296/323 (91%), Gaps = 2/323 (0%)
Query: 140 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR 199
L D K+ SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR
Sbjct: 164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRS 221
Query: 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 259
SFEYGRYGNPTTVV+E+K+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCY
Sbjct: 222 VSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCY 281
Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319
RKTRIF+E LPK+GIT TVIDPAD+ GLEAA+N VSLFFTESPTNPFLRCVD++LVS
Sbjct: 282 RKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVS 341
Query: 320 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379
+CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++
Sbjct: 342 KICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSE 401
Query: 380 IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 439
IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV V+YPGL
Sbjct: 402 IRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLP 461
Query: 440 SHPEHHIATQQMTGFGGVVSFEV 462
SHPEH +A +QMTGFGGVVSFE+
Sbjct: 462 SHPEHELAKRQMTGFGGVVSFEI 484
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Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
GI TD A++ P+ TS Y K L KE +EY R GNPT +EE ++ L
Sbjct: 12 GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63
Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
EG +SG+ A +L+L AG HI+ D Y T ++ VL K GI ++D
Sbjct: 64 EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122
Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
++++ L+AA +++F E+P+NP L+ +D+K +S + A+ +D TFATP Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181
Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIR 401
++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I L + +G L P ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241
Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
G+KTL LR++ ++ A ++A+ LE V +V+YPGL SHP H IA +QM+ FGG++SFE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFE 301
Query: 462 VC 463
+
Sbjct: 302 LT 303
|
The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
GI TD A++ P+ TS Y K L KE +EY R GNPT +EE ++ L
Sbjct: 12 GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63
Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
EG +SG+ A +L+L AG HI+ D Y T ++ VL K GI ++D
Sbjct: 64 EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122
Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
++++ L+AA +++F E+P+NP L+ +D+K +S + A+ +D TFATP Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181
Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIR 401
++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I L + +G L P ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241
Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
G+KTL LR++ ++ A ++A+ LE V +V+YPGL SHP H IA +QM+ FGG++SFE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFE 301
Query: 462 VC 463
+
Sbjct: 302 LT 303
|
The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 185/307 (60%), Gaps = 13/307 (4%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IH G R T A++ P+ TS Y K L KE +EY R GNPT +EE
Sbjct: 9 IHGGISTDR--TTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEE 58
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
++ LEG +SG+ A +L+L AG HI+ D Y T ++ VL K GI
Sbjct: 59 LIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIY 117
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
++D +++E L+AA +++F E+P+NP L+ +D+K +S + A+ +D TFAT
Sbjct: 118 DLVDLSNLEDLKAAFKAETKAVYF-ETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFAT 176
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 396
P Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L +I L + +G L P +
Sbjct: 177 PYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDS 236
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
+L+ RG+KTL R++ ++ A ++A+ LEA V +V+YPGL +H H IA +QMT FGG
Sbjct: 237 WLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGG 296
Query: 457 VVSFEVC 463
++SFE+
Sbjct: 297 MISFELT 303
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The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P24601|METB_HERAU Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 182/305 (59%), Gaps = 13/305 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIHAG+ VT A+ P+ TS Y + + +EY R NPT ++
Sbjct: 9 AIHAGQDPES--VTGAVIVPIYQTSTYAQRGVGD--------HTGYEYSRTDNPTRTALQ 58
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
++ALE A+ ++ ASG+ AST ++L ++ AG H++ D Y T + V+ + G++
Sbjct: 59 TCLAALEEAKHALVFASGLGASTTLML-MLKAGDHVICGDDVYGGTYRLFQRVMTEHGLS 117
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
ID AD E + AA+ N L + E+PTNP L+ + ++ + + G +D TFA
Sbjct: 118 FDFIDMADPEAVRAAIKPNT-RLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFA 176
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNA 395
+P NQ+ ++LGAD+VLHS TK+IGGH+DV+ G+I + + +L +++ L + G P
Sbjct: 177 SPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAIMTSNDELYEKLKFLQNAAGAVPGPFD 236
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
+L++RG+KTL +R++ AL +A+ L HP V++V YPGL SHP+H++A +QM GFG
Sbjct: 237 CWLVLRGVKTLSIRMRDDERNALAIAQFLTEHPGVEKVIYPGLPSHPQHNLAREQMRGFG 296
Query: 456 GVVSF 460
G++S
Sbjct: 297 GMISI 301
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Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Herpetosiphon aurantiacus (taxid: 65) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 185/313 (59%), Gaps = 21/313 (6%)
Query: 155 SLAIHAG----ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 210
+L IH G E+ G A++ P+ S Y K + +EY R NP
Sbjct: 5 TLMIHGGITGDEKTG------AVSVPIYQVSTYKQPKAGQ--------HTGYEYSRTANP 50
Query: 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270
T +E ++ LE E+ +SGM+A T +++ L +G H+V T D Y T + VL
Sbjct: 51 TRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVL 109
Query: 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
++GI +T +D + E +E A+ N +++ E+PTNP L+ D+ L++D+ K G ++
Sbjct: 110 NRLGIESTFVDTSSREEVEKAIRPNTKAIYI-ETPTNPLLKITDLTLMADIAKKAGVLLI 168
Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGG 389
+D TF TP Q+ L+LGAD+VLHSATK++GGH+DV+ G ++ S +L ++ + + GG
Sbjct: 169 VDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGG 228
Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 449
L P ++L++RG+KTL LR++ + A ++A LE HP V+ ++YPG +HP H +A
Sbjct: 229 VLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKT 288
Query: 450 QMTGFGGVVSFEV 462
Q GFGG++SF++
Sbjct: 289 QGAGFGGMISFDI 301
|
Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 13/304 (4%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IH G + T A++ P+ TS Y +EY R GNPT +EE
Sbjct: 8 IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------HHKGYEYSRSGNPTRFALEE 57
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
++ LEG ASG+ A + +L+ +G H++ D Y T VL K G++
Sbjct: 58 LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSC 116
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
T+ID +D+ ++ A+ N +L+ E+P+NP L+ D+ + + G + +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 396
P Q L LGAD+V+HS TK++GGH+DV+AG ++ + + L +I + +GG L P +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
+L+ RG+KTL LR+Q AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMQAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295
Query: 457 VVSF 460
++SF
Sbjct: 296 MLSF 299
|
Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Helicobacter pylori (taxid: 210) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 13/304 (4%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IH G + T A++ P+ TS Y R +EY R GNPT +EE
Sbjct: 8 IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------RHKGYEYSRSGNPTRFALEE 57
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
++ LEG ASG+ A + +L+ +G H++ D Y T VL K G++
Sbjct: 58 LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSC 116
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
T+ID +D+ ++ A+ N +L+ E+P+NP L+ D+ + + G + +D TFAT
Sbjct: 117 TIIDTSDISQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 396
P Q L LGAD+V HS TK++GGH+DV+AG ++ + + L +I + +GG L P +
Sbjct: 176 PYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
+L+ RG+KTL LR++ AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295
Query: 457 VVSF 460
++SF
Sbjct: 296 MLSF 299
|
Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|P55218|METZ_PSEAE O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 159/259 (61%), Gaps = 1/259 (0%)
Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
Y RY NPT EE+++ALEGAE V ASGMSA ++++L +G H++ + + T
Sbjct: 67 YSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTI 126
Query: 264 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
+ + GI +D+ EAA N LFF ESP+NP VD+ ++++ H
Sbjct: 127 SLFDKYFKRFGIQVDYPPLSDLAAWEAACKPNT-KLFFVESPSNPLAELVDIAALAEIAH 185
Query: 324 KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL 383
KGA++ +D F TP Q+ L LGAD+V+HSATK+I G + G ++G G+ + ++
Sbjct: 186 AKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVGF 245
Query: 384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 443
G L+P A+L ++G++TL +R+Q +++AL +A+ LE P ++RV+Y GL SHP+
Sbjct: 246 LRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAGLPSHPQ 305
Query: 444 HHIATQQMTGFGGVVSFEV 462
H +A +Q +GFG VVSF+V
Sbjct: 306 HELARRQQSGFGAVVSFDV 324
|
Catalyzes the formation of L-homocysteine from O-succinyl-L-homoserine (OSHS) and hydrogen sulfide. Can not use the other activated form of L-homoserine, O-acetyl-L-homoserine, as a substrate. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: - |
| >sp|P66875|METB_MYCTU Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 172/314 (54%), Gaps = 11/314 (3%)
Query: 150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGN 209
+S + AIHAG R T A+ P+ +S + L R FEY R GN
Sbjct: 11 ISGPATRAIHAGYR--PDPATGAVNVPIYASSTFAQDGVGGL-------RGGFEYARTGN 61
Query: 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 269
PT +E ++A+E +SGM+A+ L A++ G H+V D Y T I+ V
Sbjct: 62 PTRAALEASLAAVEEGAFARAFSSGMAATDCALRAMLRPGDHVVIPDDAYGGTFRLIDKV 121
Query: 270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329
+ + T + AD++ + AA+ L + E+PTNP L D+ +++L + A V
Sbjct: 122 FTRWDVQYTPVRLADLDAVGAAITPRT-RLIWVETPTNPLLSIADITAIAELGTDRSAKV 180
Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLG 388
+D TFA+P Q+ L LGAD+VLHS TK+IGGH+DV+ G+ ++ +L + L + G
Sbjct: 181 LVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAG 240
Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
P AYL +RG+KTL LR+Q+ + A +A+ L HP V V YPGL SHP H IA
Sbjct: 241 AVPGPFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAA 300
Query: 449 QQMTGFGGVVSFEV 462
+QM GFGG+VS +
Sbjct: 301 RQMRGFGGMVSVRM 314
|
Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| 350536179 | 540 | cystathionine gamma synthase [Solanum ly | 0.963 | 0.831 | 0.746 | 0.0 | |
| 8439541 | 539 | cystathionine gamma-synthase isoform 1 [ | 0.961 | 0.831 | 0.744 | 0.0 | |
| 8439543 | 540 | cystathionine gamma-synthase isoform 2 [ | 0.944 | 0.814 | 0.732 | 0.0 | |
| 5804835 | 545 | cystathionine gamma synthase [Fragaria v | 0.980 | 0.838 | 0.726 | 0.0 | |
| 224141019 | 532 | predicted protein [Populus trichocarpa] | 0.959 | 0.840 | 0.737 | 0.0 | |
| 296082945 | 497 | unnamed protein product [Vitis vinifera] | 0.881 | 0.826 | 0.712 | 0.0 | |
| 225452877 | 531 | PREDICTED: cystathionine gamma-synthase, | 0.950 | 0.834 | 0.728 | 0.0 | |
| 430736214 | 534 | cystathionine gamma-synthase [Cicer arie | 0.935 | 0.816 | 0.703 | 0.0 | |
| 297828634 | 564 | hypothetical protein ARALYDRAFT_477417 [ | 0.987 | 0.815 | 0.694 | 0.0 | |
| 430736216 | 535 | cystathionine gamma-synthase [Lens culin | 0.944 | 0.822 | 0.706 | 0.0 |
| >gi|350536179|ref|NP_001234489.1| cystathionine gamma synthase [Solanum lycopersicum] gi|40806079|gb|AAR92031.1| cystathionine gamma synthase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/458 (74%), Positives = 389/458 (84%), Gaps = 9/458 (1%)
Query: 13 SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
S++ + SFECRS+PDFSGS K R S G++ + G+SSLI+RFPPNFVRQ
Sbjct: 5 SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIYRFPPNFVRQ 64
Query: 71 LSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA-SAAPAPPAPVEITSGDD-IAL 128
LS KARRNCSNIGVAQ+VAASWSN+ + AA A S+A A + IT+GD+ +A+
Sbjct: 65 LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITTGDEEVAV 124
Query: 129 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 184
V+ +NVQ++ +K ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCSDQNVQIKGSTGVK-YASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 183
Query: 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 244
F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 184 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 243
Query: 245 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM LE ALN V LFFTES
Sbjct: 244 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELALNQKKVDLFFTES 303
Query: 305 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 364
PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 304 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 363
Query: 365 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 424
VLAG ISG KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+IL
Sbjct: 364 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 423
Query: 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
EAHPKVK V+YPGL SHPE+H+A +QMTGFGGVVSFEV
Sbjct: 424 EAHPKVKHVYYPGLPSHPEYHLAKKQMTGFGGVVSFEV 461
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8439541|gb|AAF74981.1|AF082891_1 cystathionine gamma-synthase isoform 1 [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/458 (74%), Positives = 385/458 (84%), Gaps = 10/458 (2%)
Query: 13 SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
S++ + SFECRS+PDFSGS K R S G++ + G+SSLIFRFPPNFVRQ
Sbjct: 5 SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIFRFPPNFVRQ 64
Query: 71 LSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA-SAAPAPPAPVEITSGDD-IAL 128
LS KARRNCSNIGVAQ+VAASWSN+ + AA A S+A A + IT+GD+ +A+
Sbjct: 65 LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITAGDEEVAV 124
Query: 129 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 184
V+ +NVQ+ ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCNDQNVQITGTG--VKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 182
Query: 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 244
F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 183 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 242
Query: 245 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM LE LN V LFFTES
Sbjct: 243 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELTLNQKKVDLFFTES 302
Query: 305 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 364
PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 303 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 362
Query: 365 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 424
VLAG ISG KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+IL
Sbjct: 363 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 422
Query: 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
EAHPKVK V+YPGL SHPE+H+A +QMTGFGGVVSFEV
Sbjct: 423 EAHPKVKHVYYPGLPSHPEYHLAKKQMTGFGGVVSFEV 460
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8439543|gb|AAF74982.1|AF082892_1 cystathionine gamma-synthase isoform 2 [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/453 (73%), Positives = 382/453 (84%), Gaps = 13/453 (2%)
Query: 20 SFECRSDPDFSGSA-RFDKP----RISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTK 74
SF+CRSDPDFSG R D P R S + +S G+SSLI RFPPNFVRQLS K
Sbjct: 12 SFQCRSDPDFSGGVPRHDLPNAGVRFSVKVKSLSRGSSVHGMSSLILRFPPNFVRQLSVK 71
Query: 75 ARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALV----- 129
ARRNCSNIG+AQ+VAASWSN+ S + AA A AA AP +IT+GD+ V
Sbjct: 72 ARRNCSNIGLAQVVAASWSNNHASPDFTPAAKAVDAASI--APFDITTGDEEGAVVEDSP 129
Query: 130 DGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTA 189
+NVQ+E L D+K +SFLSSDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFFKKT+
Sbjct: 130 RADRNVQIEDLTDVKY-SSFLSSDGSIAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTS 188
Query: 190 ELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG 249
+LIDFKEK+RASFEYGRYGNPT++V EEK+SALEGA++T++MASGM ASTV+LLALVPAG
Sbjct: 189 DLIDFKEKKRASFEYGRYGNPTSIVAEEKISALEGADATLLMASGMCASTVLLLALVPAG 248
Query: 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF 309
GHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+ LE+ LN V+LFFTESPTNPF
Sbjct: 249 GHIVTTTDCYRKTRIFIETILPKMGITATVIDPADIGALESVLNQKKVTLFFTESPTNPF 308
Query: 310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS 369
LRCVD++LVS LCH+KGA+VCIDGTFATPLNQK L+LGADLV+HSATK++GGHNDVL G
Sbjct: 309 LRCVDIELVSKLCHEKGALVCIDGTFATPLNQKVLALGADLVVHSATKYLGGHNDVLGGC 368
Query: 370 ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK 429
ISG KLV+ +R LHH+LGGA+NPNAAYLIIRGMKTLHLRVQQQNSTA R+A+ILEAHPK
Sbjct: 369 ISGPDKLVSAVRTLHHILGGAINPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPK 428
Query: 430 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
V+ V+YPGL SHPE+H+A +QMTGFGGVVSFEV
Sbjct: 429 VRCVYYPGLPSHPEYHLAKRQMTGFGGVVSFEV 461
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5804835|emb|CAA04772.2| cystathionine gamma synthase [Fragaria vesca] gi|6012969|emb|CAB57356.1| cystathionine gamma synthase [Fragaria vesca] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/471 (72%), Positives = 392/471 (83%), Gaps = 14/471 (2%)
Query: 1 MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFD-KPRISAARVIGASTASFSGVSSL 59
M V +C ++ + SSS S++ CR PD + A + +P +A RV S A F G+SSL
Sbjct: 1 MGVYTCP--RVFTSSSSSSTYCCRHHPDLATRAAVNPRPGFAAGRV--DSPAPFHGLSSL 56
Query: 60 IFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN---SVGSGSNSAAATAASAAPAPPA 116
I RFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN + + ++A AA+ A
Sbjct: 57 ILRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNKDSDLSAVPAASAVDAAATAADLVV 116
Query: 117 PVEITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 171
P +I + DD+A VD VQL L DLK +ASFLSSDGS+AIHAGERLGRGIVTD
Sbjct: 117 PAQIGTEDDLAAVDAEYAVFGNGVQLGGLPDLK-DASFLSSDGSIAIHAGERLGRGIVTD 175
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
AITTPVVNTSAYFFKKTA+L+DFKEKR SFEYGRYGNPTTVV+EEK+SALEGAEST+++
Sbjct: 176 AITTPVVNTSAYFFKKTADLLDFKEKRATSFEYGRYGNPTTVVLEEKISALEGAESTLLL 235
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
ASGM ASTV+L+ALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITAT+IDPAD+ LE A
Sbjct: 236 ASGMCASTVLLMALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATIIDPADVGALETA 295
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
LN N VSLFFTESPTNPFLRCVD+ LVSDLCH KGA+VCI+GTFATP+NQKAL+LGADLV
Sbjct: 296 LNENKVSLFFTESPTNPFLRCVDINLVSDLCHSKGAVVCINGTFATPINQKALALGADLV 355
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411
+HSATK++ GHNDVLAG ISGS KLV++IR LHH+LGGALNPNAAYLIIRGMKTLH+R+Q
Sbjct: 356 VHSATKYLAGHNDVLAGCISGSMKLVSEIRILHHILGGALNPNAAYLIIRGMKTLHIRIQ 415
Query: 412 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
QQNSTALRMAKILEAHPKV V+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 416 QQNSTALRMAKILEAHPKVAHVYYPGLPSHPEHELAKRQMTGFGGVVSFEI 466
|
Source: Fragaria vesca Species: Fragaria vesca Genus: Fragaria Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141019|ref|XP_002323872.1| predicted protein [Populus trichocarpa] gi|222866874|gb|EEF04005.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/465 (73%), Positives = 386/465 (83%), Gaps = 18/465 (3%)
Query: 1 MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKP---RISAARVIGASTASFSGVS 57
MAVSSC K+ SSFECRSD S+ D+P R ++AR S +G+S
Sbjct: 1 MAVSSCPCPKLFV----ASSFECRSD----SSSSADQPSQGRSNSARHGTTPFLSGAGMS 52
Query: 58 SLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAP 117
SLI +FPPNFVRQLSTKARRNCSNIGVAQIVAASWSN+ +G+ SAAA AA+AA A
Sbjct: 53 SLILKFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNNSAAGAPSAAAAAAAAAAA---- 108
Query: 118 VEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPV 177
++ L +LE L+ SFLSSDGS+A+HAGERLGRGIVTDAITTPV
Sbjct: 109 ---SAIPAAEPAKTLAGNELEDLSSDLEYKSFLSSDGSIAVHAGERLGRGIVTDAITTPV 165
Query: 178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSA 237
VNTSAYFFKKT ELIDFKEKR AS+EYGRYGNPTT V+E+K+S LEGAEST+I+ASGM A
Sbjct: 166 VNTSAYFFKKTQELIDFKEKRHASYEYGRYGNPTTQVLEDKISELEGAESTLILASGMCA 225
Query: 238 STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV 297
STV+LLALVPAGGH+VTTTDCYRKTRIF+ET LPKMGIT TVIDPAD++ LE+AL N V
Sbjct: 226 STVLLLALVPAGGHLVTTTDCYRKTRIFMETFLPKMGITVTVIDPADVKALESALEINKV 285
Query: 298 SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATK 357
SLFFTESPTNPFLRCVD++LVS+LCH+KGA+VCIDGTFATPLNQKAL+LGADL+LHSATK
Sbjct: 286 SLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDGTFATPLNQKALALGADLILHSATK 345
Query: 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTA 417
FIGGHNDVL G ISGS K+V++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA
Sbjct: 346 FIGGHNDVLGGCISGSTKVVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTA 405
Query: 418 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
LRMAKILEAHPKV+ V+YPGL SHPEHHIA +QMTGFGGVVSFEV
Sbjct: 406 LRMAKILEAHPKVRCVYYPGLPSHPEHHIAKKQMTGFGGVVSFEV 450
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082945|emb|CBI22246.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/469 (71%), Positives = 365/469 (77%), Gaps = 58/469 (12%)
Query: 1 MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
MAVSSC ++FECRS+PDF G + S R G +++
Sbjct: 1 MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52
Query: 54 SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPA 113
S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAAS
Sbjct: 53 SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASC--------------------- 91
Query: 114 PPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAI 173
+VQ E LAD K ASFL DG+L IHAGERLGRGIVTDAI
Sbjct: 92 --------------------DVQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTDAI 129
Query: 174 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS 233
TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIMAS
Sbjct: 130 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIMAS 189
Query: 234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 293
GM ASTVMLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+ TVIDPAD E L++AL+
Sbjct: 190 GMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSALD 249
Query: 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLH 353
NNV+LFFTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLVLH
Sbjct: 250 KNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLVLH 309
Query: 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQ 413
SATK+I GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQ
Sbjct: 310 SATKYIAGHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQQQ 369
Query: 414 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
NSTALRMAKILEAHPKVK V+YPGL SHPEHHIA +QMTGFGGVVSFEV
Sbjct: 370 NSTALRMAKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEV 418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452877|ref|XP_002283866.1| PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/471 (72%), Positives = 381/471 (80%), Gaps = 28/471 (5%)
Query: 1 MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
MAVSSC ++FECRS+PDF G + S R G +++
Sbjct: 1 MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52
Query: 54 SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPA 113
S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAASWS + + ++A+ AA+A+
Sbjct: 53 SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASWSADSAAAAAASASAAAAASVE 112
Query: 114 PPAPVEITS--GDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 171
V + G D VQ E LAD K ASFL DG+L IHAGERLGRGIVTD
Sbjct: 113 ASVEVSVVESSGSD---------VQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTD 161
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIM
Sbjct: 162 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIM 221
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
ASGM ASTVMLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+ TVIDPAD E L++A
Sbjct: 222 ASGMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSA 281
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
L+ NNV+LFFTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLV
Sbjct: 282 LDKNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLV 341
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411
LHSATK+I GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQ
Sbjct: 342 LHSATKYIAGHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQ 401
Query: 412 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
QQNSTALRMAKILEAHPKVK V+YPGL SHPEHHIA +QMTGFGGVVSFEV
Sbjct: 402 QQNSTALRMAKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEV 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|430736214|gb|AGA60136.1| cystathionine gamma-synthase [Cicer arietinum] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/452 (70%), Positives = 365/452 (80%), Gaps = 16/452 (3%)
Query: 20 SFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNC 79
+FECRSDPDF+ FD R S A F SS I RFPPNF RQLSTKARRNC
Sbjct: 11 TFECRSDPDFASLPSFDNRRTRHFPTAAVSVA-FYAASSPILRFPPNFQRQLSTKARRNC 69
Query: 80 SNIGVAQIVAASWSNSVGSGSNSA---------AATAASAAPAPPAPVEITSGDDIALVD 130
SNIGVAQIVAASWSN GSG+ +A + A+ AP PP ++ + +++ VD
Sbjct: 70 SNIGVAQIVAASWSNE-GSGNPAAGAPPVPAVASTVDATTAP-PPLDLDAVADENVVAVD 127
Query: 131 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAE 190
VQ + + + FL SD S IHA ERLGRGIVTD ITTPVVNTSAYFFKKTA+
Sbjct: 128 ENGAVQ----TNRSSYSKFLKSDASKTIHAAERLGRGIVTDGITTPVVNTSAYFFKKTAD 183
Query: 191 LIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG 250
LIDFKEKR+ S+EYGRYGNPT+ V+EEK+S LEGAESTV+MASGM AS V+L+ALVPAGG
Sbjct: 184 LIDFKEKRQTSYEYGRYGNPTSTVLEEKISELEGAESTVLMASGMCASIVLLMALVPAGG 243
Query: 251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310
H+VTTTDCYRKTRIFIETVLPKMGIT TV+DPAD+ LE+AL NNVSLFFTESPTNPFL
Sbjct: 244 HLVTTTDCYRKTRIFIETVLPKMGITTTVVDPADVGALESALEQNNVSLFFTESPTNPFL 303
Query: 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI 370
RCVD+KLVS+LCHK GA++CIDGTFATPLNQKAL+LGADL++HS TK++GGH+DVL G I
Sbjct: 304 RCVDIKLVSELCHKHGALLCIDGTFATPLNQKALALGADLIMHSCTKYMGGHHDVLGGCI 363
Query: 371 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 430
SGS KL++QIR LHH+LGGALNPNAAYL IRGMKTLHLRVQQQNST +RMAK+LEAHPKV
Sbjct: 364 SGSDKLISQIRILHHILGGALNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAKLLEAHPKV 423
Query: 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
KRV+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 424 KRVYYPGLPSHPEHELAMRQMTGFGGVVSFEI 455
|
Source: Cicer arietinum Species: Cicer arietinum Genus: Cicer Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828634|ref|XP_002882199.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata] gi|297328039|gb|EFH58458.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/487 (69%), Positives = 387/487 (79%), Gaps = 27/487 (5%)
Query: 1 MAVSSCSSQKILSFSSSCSSFECRSDPDFSGS--ARFDKPRISAARVIGASTASFSGVSS 58
MAVSS I S SS S F+CRSDPD GS + R++A I +S G+SS
Sbjct: 1 MAVSSFQCPTIFSSSSI-SGFQCRSDPDLVGSPVGGSSRRRVNATAGISSSFTGDGGLSS 59
Query: 59 LIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSG------------------- 99
I RFPPNFVRQLS KARRNCSNIGVAQIVAA WSN+ SG
Sbjct: 60 RILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSGLPSAAAAAAASSASAVSSA 119
Query: 100 --SNSAAATAASAAPAPPAPVEITSGDDIALV--DGLKNVQLEALADLKNEASFLSSDGS 155
+ +A++ AA+ A P V + S D+ +V +G++ ++ ++ ++ SFLSSDGS
Sbjct: 120 ASAATASSAAAAPEAAAPPVVVLKSVDEEVVVAKEGIRE-KIGSVQLTDSKHSFLSSDGS 178
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
L +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR SFEYGRYGNPTTVV+
Sbjct: 179 LTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVL 238
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E LPK+GI
Sbjct: 239 EEKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGI 298
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
T TVIDPAD+ GLEAA+N VSLFFTESPTNPFLRCVD++LVS++CHK+G +VCIDGTF
Sbjct: 299 TVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSEICHKRGTLVCIDGTF 358
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA 395
ATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNA
Sbjct: 359 ATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNA 418
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
AYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV V+YPGL SHPEH +A +QMTGFG
Sbjct: 419 AYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLASHPEHELAKRQMTGFG 478
Query: 456 GVVSFEV 462
GVVSFE+
Sbjct: 479 GVVSFEI 485
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|430736216|gb|AGA60137.1| cystathionine gamma-synthase [Lens culinaris] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/449 (70%), Positives = 370/449 (82%), Gaps = 9/449 (2%)
Query: 20 SFECRSDPDFSGSARFDKPRISAARVIGAS-TASFSGVSSLIFRFPPNFVRQLSTKARRN 78
+FECRSDPDF+ + R + A +A+F GVSS I RFPPNF RQLSTKARRN
Sbjct: 11 TFECRSDPDFASLPSTENLRSTPRHFPAAGLSAAFYGVSSPILRFPPNFQRQLSTKARRN 70
Query: 79 CSNIGVAQIVAASWSNSVGSGSNSAAAT----AASAAPAPPAPVEITSG-DDIALVDGLK 133
CSNIGVAQIVAASWSN G+GS +A A ASA A AP+ + G DD ++VD K
Sbjct: 71 CSNIGVAQIVAASWSNE-GAGSPAAGANPVPAVASAVDAATAPLPVDLGADDESVVDAGK 129
Query: 134 NVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID 193
N ++ + + +SFL +D S IHA ERLGR IVTDAITTPVVNTSAYFFKKTA+LID
Sbjct: 130 NGAVQT--NRSSYSSFLKTDASKTIHAAERLGRAIVTDAITTPVVNTSAYFFKKTADLID 187
Query: 194 FKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV 253
+KEKR AS+EYGRYGNPT+ V+EEK+S LEGAESTV++ASGM AS V+L+AL+PAGGH+V
Sbjct: 188 YKEKRLASYEYGRYGNPTSTVLEEKLSELEGAESTVLLASGMCASIVLLMALIPAGGHLV 247
Query: 254 TTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV 313
TTTDCYRKTR+FIETVLPKMGITA+VIDPAD+ LE+AL N VSLFFTESPTNPFLRCV
Sbjct: 248 TTTDCYRKTRVFIETVLPKMGITASVIDPADVGALESALEQNKVSLFFTESPTNPFLRCV 307
Query: 314 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS 373
D+KLVS+LCHK GA++CIDGTFATPLNQKAL+LGADLV+HS TK+IGGH+DV+ G ISGS
Sbjct: 308 DIKLVSELCHKNGALLCIDGTFATPLNQKALALGADLVMHSCTKYIGGHHDVIGGCISGS 367
Query: 374 GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433
KL+++IR LHH+LGG LNPNAAYL IRG+KTLHLRVQQQNST + MAK LEAHPKVKRV
Sbjct: 368 DKLISEIRILHHILGGVLNPNAAYLFIRGLKTLHLRVQQQNSTGMGMAKFLEAHPKVKRV 427
Query: 434 HYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 428 YYPGLPSHPEHELAMRQMTGFGGVVSFEI 456
|
Source: Lens culinaris Species: Lens culinaris Genus: Lens Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| TAIR|locus:2102072 | 563 | MTO1 "METHIONINE OVERACCUMULAT | 0.736 | 0.609 | 0.790 | 1.4e-159 | |
| TAIR|locus:2006887 | 412 | AT1G33320 [Arabidopsis thalian | 0.648 | 0.733 | 0.705 | 1e-114 | |
| UNIPROTKB|Q4KA19 | 424 | mdeA "Methionine gamma-lyase" | 0.673 | 0.740 | 0.401 | 1.9e-58 | |
| UNIPROTKB|Q81LL6 | 377 | BAS4268 "Cys/Met metabolism PL | 0.628 | 0.777 | 0.392 | 6.8e-56 | |
| TIGR_CMR|BA_4600 | 377 | BA_4600 "cystathionine beta-ly | 0.628 | 0.777 | 0.392 | 6.8e-56 | |
| UNIPROTKB|Q8EG02 | 397 | mdeA "Methionine gamma-lyase M | 0.675 | 0.793 | 0.363 | 3.5e-52 | |
| TIGR_CMR|SO_1812 | 397 | SO_1812 "methionine gamma-lyas | 0.675 | 0.793 | 0.363 | 3.5e-52 | |
| TIGR_CMR|SPO_A0318 | 400 | SPO_A0318 "methionine gamma-ly | 0.618 | 0.72 | 0.383 | 2.2e-50 | |
| TIGR_CMR|SPO_0413 | 403 | SPO_0413 "Cys/Met metabolism P | 0.645 | 0.746 | 0.359 | 5.8e-50 | |
| DICTYBASE|DDB_G0269122 | 387 | cysA "cystathionine gamma-lyas | 0.639 | 0.770 | 0.345 | 3.2e-49 |
| TAIR|locus:2102072 MTO1 "METHIONINE OVERACCUMULATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1405 (499.6 bits), Expect = 1.4e-159, Sum P(2) = 1.4e-159
Identities = 275/348 (79%), Positives = 308/348 (88%)
Query: 118 VEITSGDDIALV--DGLKN-VQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAIT 174
V + S D+ +V +G++ + L D K+ SFLSSDGSL +HAGERLGRGIVTDAIT
Sbjct: 139 VVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAIT 196
Query: 175 TPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG 234
TPVVNTSAYFFKKTAELIDFKEKR SFEYGRYGNPTTVV+E+K+SALEGAEST++MASG
Sbjct: 197 TPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASG 256
Query: 235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN 294
M ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E LPK+GIT TVIDPAD+ GLEAA+N
Sbjct: 257 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNE 316
Query: 295 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHS 354
VSLFFTESPTNPFLRCVD++LVS +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HS
Sbjct: 317 FKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHS 376
Query: 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
ATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQN
Sbjct: 377 ATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQN 436
Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
STA RMA+ILEAHPKV V+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 437 STAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEI 484
|
|
| TAIR|locus:2006887 AT1G33320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 213/302 (70%), Positives = 254/302 (84%)
Query: 161 GERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMS 220
GERL R + T +ITT VVNT+ YFFK T ELIDFKEKR +EY RYGNPTT+ +EEK+S
Sbjct: 33 GERLRRDMKTSSITTLVVNTTTYFFKDTTELIDFKEKRIDLYEYARYGNPTTMALEEKIS 92
Query: 221 ALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280
LEGAEST++MASGM AS VMLLALVP GHIV T DCY++TRIF+E L K+GIT T I
Sbjct: 93 VLEGAESTLVMASGMYASNVMLLALVPTNGHIVATKDCYKETRIFMENFLTKLGITVTFI 152
Query: 281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN 340
D D+ GL+ +NN+ VSLFFTESPTNPFLRCVD+KLVS +CH++G +VCID T ATP+N
Sbjct: 153 DSDDIAGLQTLVNNHEVSLFFTESPTNPFLRCVDIKLVSKICHRRGTLVCIDATIATPIN 212
Query: 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII 400
QK L+LGADLV HSATK+IGGHND LAGSISGS +LV++IRNLH +LGG LNPNAAYL+I
Sbjct: 213 QKTLALGADLVHHSATKYIGGHNDFLAGSISGSMELVSKIRNLHKLLGGTLNPNAAYLLI 272
Query: 401 RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
RGMKT+HLRV+QQNST ++MA++LEAHPKV RV+Y GL SHPEH IA +QMTG GG++SF
Sbjct: 273 RGMKTMHLRVRQQNSTGMKMAQVLEAHPKVSRVYYLGLPSHPEHLIAKRQMTGIGGLISF 332
Query: 461 EV 462
E+
Sbjct: 333 EI 334
|
|
| UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 128/319 (40%), Positives = 190/319 (59%)
Query: 144 KNEASFLSSDGSLA--IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
K E + L + G+ + GE++ +A P+V ++AY + + D +
Sbjct: 4 KPERTGLENPGTATRVVWGGEQVRHPY--NATQPPIVASAAYGYDDIDQWYDVALGKAPG 61
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
F Y R NPT +E K+ LE AES V +SGM+A + +L + + G +V+T D Y
Sbjct: 62 FIYSRMSNPTVQTLEAKLQDLENAESAVAFSSGMAAISGVLYSFLRHGQRVVSTKDSYGG 121
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
T E LP+MG+ T+ + D + +EA + L + E+PTNP L+ VD++ +
Sbjct: 122 TNKIFEEFLPRMGVAVTLCETFDQQQIEAEIAKG-CDLLYLETPTNPTLKIVDIQRLVAA 180
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
+ GA+V D TFATPLNQ L+LG D+V+HSATKF+ GH DVL G GS L++Q+R
Sbjct: 181 AKQVGALVVADNTFATPLNQNPLALGVDVVIHSATKFLSGHGDVLGGVACGSEALMSQVR 240
Query: 382 NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 441
+ + G +L+P +AYLIIRG+KTL LR++QQ +A ++A+ L P V+ V+YPGL +H
Sbjct: 241 HYREINGASLDPFSAYLIIRGIKTLALRMRQQQHSAAQLAQFLLNEPLVEAVNYPGLPNH 300
Query: 442 PEHHIATQQMTGFGGVVSF 460
P H +A QM GFG +VSF
Sbjct: 301 PNHAVACAQMRGFGAIVSF 319
|
|
| UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 120/306 (39%), Positives = 182/306 (59%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IH G R+G T ++ P+ TS Y K+ A + +EY R GNPT +EE
Sbjct: 8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
++ LE + SGM+A T ++ L G H++ T D Y T I VL + GI
Sbjct: 58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
T +D ++E +E A+ N +++ E+PTNP L+ D+K +S L +KG + ID TF T
Sbjct: 117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 396
P Q +SLGAD+VLHSATK++GGH+DV+AG + S +L + + + GG L P +
Sbjct: 176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
+L++RG+KTL +R+++ + + +A+ L HPKV +V+YPGL SH H +AT+Q GFG
Sbjct: 236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGA 295
Query: 457 VVSFEV 462
++SF+V
Sbjct: 296 IISFDV 301
|
|
| TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 120/306 (39%), Positives = 182/306 (59%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IH G R+G T ++ P+ TS Y K+ A + +EY R GNPT +EE
Sbjct: 8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
++ LE + SGM+A T ++ L G H++ T D Y T I VL + GI
Sbjct: 58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
T +D ++E +E A+ N +++ E+PTNP L+ D+K +S L +KG + ID TF T
Sbjct: 117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 396
P Q +SLGAD+VLHSATK++GGH+DV+AG + S +L + + + GG L P +
Sbjct: 176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
+L++RG+KTL +R+++ + + +A+ L HPKV +V+YPGL SH H +AT+Q GFG
Sbjct: 236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGA 295
Query: 457 VVSFEV 462
++SF+V
Sbjct: 296 IISFDV 301
|
|
| UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 117/322 (36%), Positives = 187/322 (58%)
Query: 143 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
+++++S + + AIHAG ER G ++ TP+ T+ + F + +
Sbjct: 1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
+ Y R GNPT +E KM+ LE AE+ ASGM A + LLA + G H+V + Y
Sbjct: 57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
T + + GI T++D +D+E +E A+ N + F E+P NP L+ D+ ++ +
Sbjct: 117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
+ +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS + +++
Sbjct: 176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235
Query: 382 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
+ +G ++P+ A+LI+RG+KTL +R+Q+ +A R+A+ LE HP V RV+YPGLKS
Sbjct: 236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKS 295
Query: 441 HPEHHIATQQMTGFGGVVSFEV 462
H H QQM GGV++FE+
Sbjct: 296 HSGHRFIGQQMRRAGGVIAFEL 317
|
|
| TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 117/322 (36%), Positives = 187/322 (58%)
Query: 143 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
+++++S + + AIHAG ER G ++ TP+ T+ + F + +
Sbjct: 1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
+ Y R GNPT +E KM+ LE AE+ ASGM A + LLA + G H+V + Y
Sbjct: 57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
T + + GI T++D +D+E +E A+ N + F E+P NP L+ D+ ++ +
Sbjct: 117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
+ +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS + +++
Sbjct: 176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235
Query: 382 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
+ +G ++P+ A+LI+RG+KTL +R+Q+ +A R+A+ LE HP V RV+YPGLKS
Sbjct: 236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKS 295
Query: 441 HPEHHIATQQMTGFGGVVSFEV 462
H H QQM GGV++FE+
Sbjct: 296 HSGHRFIGQQMRRAGGVIAFEL 317
|
|
| TIGR_CMR|SPO_A0318 SPO_A0318 "methionine gamma-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 113/295 (38%), Positives = 180/295 (61%)
Query: 172 AITTPVVNTSAYFFKKTAELID--FKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
A+T P+ TS + F+ TAE F +R+ Y R NPT ++E++++ LEGAE+ +
Sbjct: 24 ALTPPLHLTSTFAFE-TAEAGGEMFAGERQGHI-YSRISNPTLDLLEQRIATLEGAEAGL 81
Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
++SGM A T +L L+ G ++ Y T ++ L K G+T T +D D E L+
Sbjct: 82 ALSSGMGAITAVLWTLLSPGDEVIVDKTLYGCTFSYMRHGLAKWGVTITHVDLTDPENLK 141
Query: 290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
A+++ ++F E+P NP +R VD+ VS++ H A V +D T+ATP + + +GAD
Sbjct: 142 TAISDKTRVVYF-ETPANPNMRLVDIAAVSEIAHGASASVVVDNTYATPYLTRPIEMGAD 200
Query: 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLH 407
+VLHSATK++GGH DV+AG + G + +++IR + + G + P A LI+RG+KTL
Sbjct: 201 IVLHSATKYLGGHGDVVAGLVVGGAEQISEIRLYGMKDMTGAVMAPFNAMLILRGLKTLA 260
Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
LR+ + ++A +A+ L AHP V VH+PGL S +H +A QQM G +++FE+
Sbjct: 261 LRMDRHCASAQVVAEWLAAHPAVGEVHFPGLTSFSQHALANQQMAQPGAMIAFEL 315
|
|
| TIGR_CMR|SPO_0413 SPO_0413 "Cys/Met metabolism PLP-dependent enzyme family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 111/309 (35%), Positives = 174/309 (56%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIHAGE + A P+ +S Y + ++ + Y R+ NPT ++E
Sbjct: 14 AIHAGEAPDPATLASA--PPIHMSSTYVSEDVLGFSAHDLTPQSPYAYSRWANPTVAMLE 71
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
K++A++G E+ + ASGM+A+ + + AG H++ + Y LP+MGI
Sbjct: 72 AKIAAMQGTEACLCTASGMAAAAAIFFTFLSAGDHVIVSDVSYAGVAELARDTLPRMGIA 131
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
+ +D +D+ + AA+ L TE+P NP R D+ +S L + GA++ D TFA
Sbjct: 132 VSTVDMSDLAAVAAAIRPET-RLIHTETPVNPIGRLTDLAAISALARQAGALLSCDATFA 190
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR---NLHHVLGGALNP 393
+PL ++LG DL +HS TK+I GH D +AG++ G LV+++R +HH GG L+P
Sbjct: 191 SPLGMDTVALGVDLTMHSVTKYICGHGDAVAGAVCGRADLVSRMRVEAAIHH--GGVLSP 248
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
A+LI RG TL LR++ + A +A+ LEA P+V RV YPGL SHP+ +A +QM+
Sbjct: 249 FNAWLIARGAATLPLRMKAHAAGAHAVAEWLEADPRVGRVIYPGLPSHPQAELAARQMSN 308
Query: 454 FGGVVSFEV 462
++SF+V
Sbjct: 309 MSAMISFQV 317
|
|
| DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 107/310 (34%), Positives = 177/310 (57%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
G+ IHAG+ + T A+ P+ + S F + + ++ + ++Y R GNPT
Sbjct: 10 GTNVIHAGQSADKN--TGAVIVPI-SLSTTFLQPSPGVL------HSEYDYSRSGNPTRK 60
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
EE ++A E A+ + ASG++ T + L+ +G +++ D Y TR + V
Sbjct: 61 AFEECIAACENAKYALSFASGLATLTT-ITHLLKSGDEVISIDDVYGGTRRYFTRVAANF 119
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
+ + +D + ++ L+ A + L + E+PTNP L+ D+K V+D H +GA + +D
Sbjct: 120 DLKFSFVDLSTLDDLKNAFTDKT-RLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDN 178
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALN 392
TF +P Q L LGAD+V+HS TK+I GH+D + G ++ + +L +++ L + +G +
Sbjct: 179 TFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPS 238
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
P +L +RG+KTLH+R++ A + LE HPKV+RV YPGL SHP+H I +QM
Sbjct: 239 PFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMK 298
Query: 453 GFGGVVSFEV 462
G+GG+V F V
Sbjct: 299 GYGGMVVFFV 308
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P55217 | METB_ARATH | 2, ., 5, ., 1, ., 4, 8 | 0.8359 | 0.6888 | 0.5701 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.1.99.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 466 | |||
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 1e-141 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 1e-137 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 1e-119 | |
| PRK08249 | 398 | PRK08249, PRK08249, cystathionine gamma-synthase; | 1e-101 | |
| PRK06460 | 376 | PRK06460, PRK06460, hypothetical protein; Provisio | 2e-85 | |
| PRK08133 | 390 | PRK08133, PRK08133, O-succinylhomoserine sulfhydry | 3e-82 | |
| PRK07671 | 377 | PRK07671, PRK07671, cystathionine beta-lyase; Prov | 6e-81 | |
| PRK06234 | 400 | PRK06234, PRK06234, methionine gamma-lyase; Provis | 8e-80 | |
| TIGR01325 | 381 | TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul | 8e-79 | |
| PRK07811 | 388 | PRK07811, PRK07811, cystathionine gamma-synthase; | 1e-78 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 4e-78 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 2e-74 | |
| TIGR01326 | 418 | TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | 1e-73 | |
| PRK08064 | 390 | PRK08064, PRK08064, cystathionine beta-lyase; Prov | 6e-73 | |
| PRK06176 | 380 | PRK06176, PRK06176, cystathionine gamma-synthase/c | 1e-71 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 3e-71 | |
| PRK05968 | 389 | PRK05968, PRK05968, hypothetical protein; Provisio | 9e-71 | |
| PRK08574 | 385 | PRK08574, PRK08574, cystathionine gamma-synthase; | 1e-69 | |
| PRK07504 | 398 | PRK07504, PRK07504, O-succinylhomoserine sulfhydry | 1e-69 | |
| PRK07582 | 366 | PRK07582, PRK07582, cystathionine gamma-lyase; Val | 1e-68 | |
| PRK07810 | 403 | PRK07810, PRK07810, O-succinylhomoserine sulfhydry | 9e-68 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 2e-67 | |
| PRK06767 | 386 | PRK06767, PRK06767, methionine gamma-lyase; Provis | 5e-67 | |
| PRK05939 | 397 | PRK05939, PRK05939, hypothetical protein; Provisio | 6e-66 | |
| PRK06434 | 384 | PRK06434, PRK06434, cystathionine gamma-lyase; Val | 2e-64 | |
| PRK08247 | 366 | PRK08247, PRK08247, cystathionine gamma-synthase; | 4e-61 | |
| PRK05967 | 395 | PRK05967, PRK05967, cystathionine beta-lyase; Prov | 7e-61 | |
| PRK08248 | 431 | PRK08248, PRK08248, O-acetylhomoserine aminocarbox | 5e-60 | |
| TIGR01329 | 378 | TIGR01329, cysta_beta_ly_E, cystathionine beta-lya | 4e-59 | |
| PRK08134 | 433 | PRK08134, PRK08134, O-acetylhomoserine aminocarbox | 2e-58 | |
| PRK07812 | 436 | PRK07812, PRK07812, O-acetylhomoserine aminocarbox | 3e-57 | |
| PRK08045 | 386 | PRK08045, PRK08045, cystathionine gamma-synthase; | 3e-57 | |
| TIGR01324 | 377 | TIGR01324, cysta_beta_ly_B, cystathionine beta-lya | 5e-56 | |
| PRK08776 | 405 | PRK08776, PRK08776, cystathionine gamma-synthase; | 7e-56 | |
| PRK07049 | 427 | PRK07049, PRK07049, methionine gamma-lyase; Valida | 2e-55 | |
| PRK09028 | 394 | PRK09028, PRK09028, cystathionine beta-lyase; Prov | 1e-53 | |
| PRK06084 | 425 | PRK06084, PRK06084, O-acetylhomoserine aminocarbox | 2e-52 | |
| PLN02509 | 464 | PLN02509, PLN02509, cystathionine beta-lyase | 8e-52 | |
| PRK08861 | 388 | PRK08861, PRK08861, cystathionine gamma-synthase; | 1e-51 | |
| PLN02242 | 418 | PLN02242, PLN02242, methionine gamma-lyase | 1e-50 | |
| PRK05613 | 437 | PRK05613, PRK05613, O-acetylhomoserine aminocarbox | 1e-46 | |
| PRK07269 | 364 | PRK07269, PRK07269, cystathionine gamma-synthase; | 2e-45 | |
| PRK07050 | 394 | PRK07050, PRK07050, cystathionine beta-lyase; Prov | 5e-44 | |
| PRK05994 | 427 | PRK05994, PRK05994, O-acetylhomoserine aminocarbox | 1e-41 | |
| PRK08114 | 395 | PRK08114, PRK08114, cystathionine beta-lyase; Prov | 3e-39 | |
| PRK06702 | 432 | PRK06702, PRK06702, O-acetylhomoserine aminocarbox | 6e-34 | |
| COG1921 | 395 | COG1921, SelA, Selenocysteine synthase [seryl-tRNA | 2e-06 | |
| cd00615 | 294 | cd00615, Orn_deC_like, Ornithine decarboxylase fam | 7e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 5e-05 | |
| pfam03841 | 367 | pfam03841, SelA, L-seryl-tRNA selenium transferase | 2e-04 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 3e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 0.001 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 0.003 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-141
Identities = 139/310 (44%), Positives = 204/310 (65%), Gaps = 8/310 (2%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+LA+HAG+R R T A+ P+ TS Y F ++Y R GNPT
Sbjct: 2 TLAVHAGQRPDRQ--TGAVVVPIYLTSTYVFDTVE---ALFAGEHGGYDYSRSGNPTRDA 56
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+EE+++ALEG E+ + +SGM+A LLAL+ AG H+V T D Y T E VLP+ G
Sbjct: 57 LEERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG 116
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
I T +DP+D++ LEAA+ N F E+PTNP L+ VD++ ++ + K GA+V +D T
Sbjct: 117 IEVTFVDPSDLDALEAAIKPN-TKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNT 175
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--SGSGKLVTQIRNLHHVLGGALN 392
FA+P Q+ L LGAD+V+HSATK+IGGH+DV+ G + +G +L ++R L + G L+
Sbjct: 176 FASPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLS 235
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
P A+L++RG+KTL LR+++ AL++A+ LE HPKV++V+YPGL SHP H +A +QM+
Sbjct: 236 PFDAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMS 295
Query: 453 GFGGVVSFEV 462
GFGG++SFE+
Sbjct: 296 GFGGMLSFEL 305
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 399 bits (1028), Expect = e-137
Identities = 140/293 (47%), Positives = 203/293 (69%), Gaps = 2/293 (0%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
A+ P+ TS + F AE D R + Y R GNPT +E+K++ALEG E+ +
Sbjct: 1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
+SGM+A + +LLAL+ AG H+V + D Y T E +LPK+GI T +DP D E LEA
Sbjct: 61 FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
A+ L + ESPTNP L+ VD++ +++L H+ GA++ +D TFATP Q+ L LGAD+
Sbjct: 121 AI-KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADI 179
Query: 351 VLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
V+HSATK+IGGH+DV+AG + GSG+ L+ ++R L LG L+P A+L++RG+KTL LR
Sbjct: 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR 239
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
+++ + AL++A+ LE HPKV+RV+YPGL SHP+H +A +QM+G+GGV SFE+
Sbjct: 240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFEL 292
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 354 bits (912), Expect = e-119
Identities = 129/308 (41%), Positives = 187/308 (60%), Gaps = 4/308 (1%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
+HAG R T A+ P+ TS + F E +D ++Y R GNPT +E
Sbjct: 12 LVHAGRRPDDL--TGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALE 69
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
E ++ LEG E +SGM+A + LLAL+ AG H++ D Y T E +L K G+
Sbjct: 70 EALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE 129
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
T +DP D E LEAA+ N L F E+P+NP L D+ ++ L GA+V +D TFA
Sbjct: 130 VTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPN 394
TP+ Q+ L LGAD+V+HSATK++GGH+DVL G + + + ++ G L+P
Sbjct: 190 TPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPF 249
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
A+L++RG++TL LR+++ N AL++A+ L HPKVK+V+YPGL SHP H +A +QMTG+
Sbjct: 250 DAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGY 309
Query: 455 GGVVSFEV 462
GG+ SFE+
Sbjct: 310 GGLFSFEL 317
|
Length = 396 |
| >gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-101
Identities = 133/311 (42%), Positives = 192/311 (61%), Gaps = 5/311 (1%)
Query: 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
G+ A+ AGE+ + A PVV + AY + E D ++ Y R NPT
Sbjct: 9 VGTKAVWAGEK--EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTV 66
Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLP 271
EEK+ LEGAE+ ++GM+A + L + G +V+ D Y T +IF E LP
Sbjct: 67 QAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTE-FLP 125
Query: 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
+MG+ T+ + D E +EA + L + E+PTNP L+ VD++ ++ K GA+V +
Sbjct: 126 RMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVV 184
Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 391
D TFATP+NQ L+LGADLV+HSATKF+ GH D L G + GS +L+ Q+ + + G +
Sbjct: 185 DNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM 244
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
+P +AYLI+RGMKTL LRV+QQ +A+ +AK L+ HPKV+ V+YPGL++HP H IA QM
Sbjct: 245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQM 304
Query: 452 TGFGGVVSFEV 462
GFGG++SF +
Sbjct: 305 RGFGGILSFVL 315
|
Length = 398 |
| >gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 2e-85
Identities = 123/294 (41%), Positives = 180/294 (61%), Gaps = 12/294 (4%)
Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
T AITTP+ T+AY + + EK + Y R NPT + + +K+ LE AE
Sbjct: 15 ATGAITTPIYQTTAYHYPE-------GEK----YRYSREANPTVLELTKKIVELENAEMG 63
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
V +SGM A + LAL+ G ++ D + ++ F L G+ +P +
Sbjct: 64 VAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNII 123
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
E A + + F E+ TNP LR VD+ +S +C + G+I+ +D TF+TP+NQK L LGA
Sbjct: 124 EKA-KSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGA 182
Query: 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
D+V+HSA+KF+ GHNDV+AG +G GKL+ I + LG +L+P+AAYL +RG+KTL +
Sbjct: 183 DIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKI 242
Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
R+ N A ++A+ LE HPKV +V+YPGLKSH ++ IA + + GFGGV+SFEV
Sbjct: 243 RMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEV 296
|
Length = 376 |
| >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 3e-82
Identities = 117/309 (37%), Positives = 186/309 (60%), Gaps = 6/309 (1%)
Query: 155 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+LA+ AG R G ++A+ TS++ F+ AE Y R+ NPT
Sbjct: 9 TLAVRAGQLRSPFGEHSEALFL----TSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVT 64
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+ +E+++ALEGAE+ V ASGM+A +++AL+ AG H+V++ + T E + +
Sbjct: 65 MFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF 124
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
GI T +D D++ AA+ N LFF E+P+NP D+ ++++ H GA++ +D
Sbjct: 125 GIETTFVDLTDLDAWRAAVRPNT-KLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393
F TP Q+ L LGAD+V+HSATK++ G VL G++ GS +L+ ++ G L+P
Sbjct: 184 CFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSP 243
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
A++ ++G++TL LR++ ++ AL +A+ LEAHP V+RV YPGL SHP+H +A +Q G
Sbjct: 244 FNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKG 303
Query: 454 FGGVVSFEV 462
G +VSFEV
Sbjct: 304 GGAIVSFEV 312
|
Length = 390 |
| >gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 6e-81
Identities = 111/294 (37%), Positives = 178/294 (60%), Gaps = 11/294 (3%)
Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
T A++ P+ S Y + + +EY R GNPT +EE ++ LEG +
Sbjct: 18 TGAVSVPIYQVSTYKQEAVGK--------HQGYEYSRTGNPTRAALEELIAVLEGGHAGF 69
Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
SGM+A T +++ L +G H++ T D Y T + VL + GI T +D +++E +E
Sbjct: 70 AFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVE 128
Query: 290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
A+ N +++ E+PTNP L+ D+K +S + +KG + +D TF TP Q +SLGAD
Sbjct: 129 EAIRPNTKAIYV-ETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGAD 187
Query: 350 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
+VLHSATK++GGH+DV+AG + S +L + + + GG L P ++L++RG+KTL +
Sbjct: 188 IVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI 247
Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
R+++ + + +A+ L HP V +V+YPGL SHP H +A +Q GFGG++SF+V
Sbjct: 248 RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301
|
Length = 377 |
| >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 8e-80
Identities = 118/318 (37%), Positives = 190/318 (59%), Gaps = 17/318 (5%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYG 208
+ AIH G + ++ TP+ TS + F +AE + RR + E Y R G
Sbjct: 10 ATKAIHGGHIGDKQF--GSLATPIYQTSTFIFD-SAE----QGGRRFAGEESGYIYSRLG 62
Query: 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET 268
NPT+ VE K++ LEG E+ V+ ASGM A + L + + AG H+V + Y T +
Sbjct: 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNH 122
Query: 269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KG 326
L + G+ T +D +++E + AL N + + E+P NP L+ D+K +S++ H+ K
Sbjct: 123 GLTRYGVEVTFVDTSNLEEVRNALKANT-KVVYLETPANPTLKVTDIKAISNIAHENNKE 181
Query: 327 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLH 384
+V +D TF TP Q+ L LGAD+V+HSATK++ GH DV+AG + G + + Q++ +
Sbjct: 182 CLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK 241
Query: 385 HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 444
+ G + P A+LIIRGMKTL +R+++ A+++AK LE+HP V++V+YPGL+S +
Sbjct: 242 DMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYY 301
Query: 445 HIATQQMTGFGGVVSFEV 462
+A +QM+ G ++SFE+
Sbjct: 302 ELAKKQMSLPGAMISFEL 319
|
Length = 400 |
| >gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 8e-79
Identities = 124/310 (40%), Positives = 184/310 (59%), Gaps = 7/310 (2%)
Query: 155 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+LA+ G R G +A+ TS Y + A F Y RYGNPT
Sbjct: 2 TLAVRGGMLRSGFEETAEALYL----TSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVS 57
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
V EE+++ LEGAE+ V ASGM+A L+AL+ AG H+V + + + +LP+
Sbjct: 58 VFEERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF 117
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
G+ +D D+ EAAL N F E+P+NP VD+ V++L H GA V +D
Sbjct: 118 GVQTVFVDGTDLSAWEAALKPNT-KAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDN 176
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHVLGGALN 392
FATPL Q+ L LGAD+V++SATK I G VL G+I GS + + + ++ L G A++
Sbjct: 177 VFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMS 236
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
P A+++++G++TL +RVQ QN++AL +A+ L HP V+ V+YPGL SHP+H +A +QM+
Sbjct: 237 PFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQMS 296
Query: 453 GFGGVVSFEV 462
G G VV+F++
Sbjct: 297 GGGTVVTFDL 306
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381 |
| >gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 1e-78
Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 11/309 (3%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+ AIHAG T A+ P+ +S + L R +EY R GNPT
Sbjct: 15 TRAIHAGYEPDP--ATGAVNPPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTA 65
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+EE+++ALEG +SGM+A+ +L A++ G HIV D Y T I+ V + G
Sbjct: 66 LEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG 125
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
+ T +D +D++ + AA+ L + E+PTNP L D+ +++L H GA V +D T
Sbjct: 126 VEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNP 393
FA+P Q+ L+LGAD+V+HS TK+IGGH+DV+ G+ ++ +L L + G P
Sbjct: 185 FASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGP 244
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
AYL +RG+KTL +R+ + + A +A+ L HP+V V YPGL SHP H +A +QM G
Sbjct: 245 FDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRG 304
Query: 454 FGGVVSFEV 462
FGG+VS +
Sbjct: 305 FGGMVSVRL 313
|
Length = 388 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 4e-78
Identities = 116/341 (34%), Positives = 177/341 (51%), Gaps = 38/341 (11%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
LA+HAG+ T A P+ T++Y F T + Y R NPTT V+
Sbjct: 11 LAVHAGQE---DPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVL 67
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
EE+++ALEG + + +ASG +A T +L L AG +IV+++ Y T L ++GI
Sbjct: 68 EERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGI 127
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+DP D E EAA++ N F E+ NP L +D++ ++++ H+ G + +D TF
Sbjct: 128 EVRFVDPDDPENFEAAIDENT-KAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------- 376
ATP + + GAD+V+HSATK+IGGH + G I GK
Sbjct: 187 ATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYH 246
Query: 377 --------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK 422
+ L LG L+P A+L+++G++TL LR+++ AL++A+
Sbjct: 247 GLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAE 306
Query: 423 ILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEV 462
LE HPKV V+YPGL SHP H +A + + G G V++F V
Sbjct: 307 FLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGV 347
|
Length = 426 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 239 bits (610), Expect = 2e-74
Identities = 115/308 (37%), Positives = 187/308 (60%), Gaps = 5/308 (1%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIHAG A+T P+ TS + F + + + + + Y R GNPT +E
Sbjct: 8 AIHAGYPPKDQF--GALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLE 65
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
+++ LEG E+ V +SGM A LL ++ AG H+++ Y T +E L K GI
Sbjct: 66 GRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQ 125
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
I+ A E ++A + +N ++F E+P NP ++ +D++ V H +G V +D TFA
Sbjct: 126 VDFINMAIPEEVKAHIKDNTKIVYF-ETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPN 394
TP+ ++LG D+V+HSATK+IGGH DV+AG I G +L+ QIR + + G ++P
Sbjct: 185 TPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPF 244
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
A+LI+RG+KTL++R+++ + A+++A+ L++HP V++V+YPG + HP H IA +QM
Sbjct: 245 DAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMG 304
Query: 455 GGVVSFEV 462
GG+++FE+
Sbjct: 305 GGMITFEL 312
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 1e-73
Identities = 117/345 (33%), Positives = 184/345 (53%), Gaps = 44/345 (12%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+L +HAG+ T + P+ T++Y F T + A Y R NPTT V
Sbjct: 4 TLQLHAGQEPDP--TTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDV 61
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+E++++ALEG + + +ASG +A T +L L AG +IV+++ Y T + L ++G
Sbjct: 62 LEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLG 121
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
I +DP D E E A++ N ++F E+ NP + D++ ++++ H G + +D T
Sbjct: 122 IEVRFVDPDDPEEFEKAIDENTKAVFA-ETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 376
FATP + + GAD+V+HSATK+IGGH + G I GK
Sbjct: 181 FATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYH 240
Query: 377 ------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418
V +R+ LG AL+P A+L+++G++TL LR+++ AL
Sbjct: 241 GLVFTETFGNPAFIVKARVQLLRD----LGAALSPFNAFLLLQGLETLSLRMERHVENAL 296
Query: 419 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEV 462
++A+ LEAHPKV V+YPGL SHP H +A + + GFG V+SFE+
Sbjct: 297 KVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEI 341
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418 |
| >gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (600), Expect = 6e-73
Identities = 112/295 (37%), Positives = 166/295 (56%), Gaps = 13/295 (4%)
Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
T A+ P+ + S T DF ++Y R GNPT +E+ ++ LEG
Sbjct: 22 TGAVNVPIYHAS------TFHQFDFDT--FGKYDYSRSGNPTREALEDIIAELEGGTKGF 73
Query: 230 IMASGMSA-STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
ASGM+A ST LL + G H++ + D Y T I VL + GI T +D ++E +
Sbjct: 74 AFASGMAAISTAFLL--LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEV 131
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
+ N LF+ E+P+NP L+ D++ V L G + +D TF TPL QK L LGA
Sbjct: 132 AQNIKPNT-KLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGA 190
Query: 349 DLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
D+VLHSATKF+ GH+DVLAG ++ +L ++ L + G L +L++RG+KTLH
Sbjct: 191 DVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTLH 250
Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
+R++ + TA ++A L+ HPKV+ V+YPGL++H I Q T G V+SF +
Sbjct: 251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL 305
|
Length = 390 |
| >gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 1e-71
Identities = 114/306 (37%), Positives = 178/306 (58%), Gaps = 13/306 (4%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IH G + T A++ P+ TS Y ++ A R +EY R GNPT +EE
Sbjct: 8 IHGG--ISEDTTTGAVSVPIYQTSTY--RQDAI------GRPKGYEYSRSGNPTRFALEE 57
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
++ LEG ASG+ A + +L +G H++ D Y T + VL K G++
Sbjct: 58 LIADLEGGVKGFAFASGL-AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSC 116
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
T+ID +D+ ++ A+ N +L+ E+P+NP L+ D+ + + G + +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 396
P Q L LGAD+V+HS TK++GGH+DV+AG + + + L +I + +GG L P +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
+L+ RG+KTL LR++ AL +A+ LE HPKV++V+YPGL +HP H +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSG 295
Query: 457 VVSFEV 462
++SF +
Sbjct: 296 MLSFTL 301
|
Length = 380 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 3e-71
Identities = 110/293 (37%), Positives = 171/293 (58%), Gaps = 3/293 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
A+ PV T+ + F + Y R NPT ++E++M++LEG E+ V +
Sbjct: 27 ALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
ASGM A T L L+ G ++ Y T F+ L + G+T +D D L+AA
Sbjct: 87 ASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
+++ ++F E+P NP +R VD+ V+++ H GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 ISDKTRMVYF-ETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
+HSATK++GGH D+ AG + G L +IR L + G ++P A+L++RG+KTL LR
Sbjct: 206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALR 265
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
+ + ++A +A+ L HP V+ VHYPGL S +H +A +QM GG+++FE+
Sbjct: 266 MDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFEL 318
|
Length = 403 |
| >gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 9e-71
Identities = 104/293 (35%), Positives = 164/293 (55%), Gaps = 8/293 (2%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
DA+ P+ TS + F E+ D + Y R NPT EE ++ LEGAE
Sbjct: 24 DAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARG 83
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
ASGM+A + +L+ V G IV Y ET+L +MG+ +D D E +
Sbjct: 84 FASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAK 143
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
AL L + ESPT+ DV ++ L + G + ID ++A+P+ Q+ ++LG DL
Sbjct: 144 AL--PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDL 201
Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNPNAAYLIIRGMKTLHLR 409
V+HSA+K++GGH+D +AG ++GS + + +I + LG L+P A+L++RG++TL LR
Sbjct: 202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLPLR 261
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
++ ++AL +A+ L+AHP V+RV +P L +HP A ++G G+ SF
Sbjct: 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPP---AG--LSGTSGLFSFIF 309
|
Length = 389 |
| >gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 1e-69
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 12/313 (3%)
Query: 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
G+ A+ ++ P+ T+ + + A D R +Y R NPT
Sbjct: 3 RGTDAVRGYRGSDP---YGSLQPPIYLTALFRQEGEAYPSD----RGFDLKYSREENPTL 55
Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
+EE ++ LEG + SGM+A + + +L+ AG +V + Y T + + L K
Sbjct: 56 RPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTT-LRLLKSLEK 114
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
G+ + P E + A+ L F E+ TNP L+ +DV V+ + GAI+ +D
Sbjct: 115 FGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD 173
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGAL 391
TFATPL + L GAD V+HS TK+I GHNDV+ G ++ SG+ + ++ LG +
Sbjct: 174 NTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM 233
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
P AYL++RG+KTL +R ++Q A+ +A+ L HPKV V+YPGL S P H +A +
Sbjct: 234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLF 293
Query: 452 TG--FGGVVSFEV 462
+GGVVSF V
Sbjct: 294 GKDLYGGVVSFRV 306
|
Length = 385 |
| >gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 1e-69
Identities = 108/264 (40%), Positives = 157/264 (59%), Gaps = 6/264 (2%)
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
F Y RY NPT + E++M ALEGAE ASGM+A T +L V AG H+V +
Sbjct: 57 FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARALFGS 116
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
R +ET+LP+ GI +T++D D++ E A+ N +FF ESPTNP L +D+ V+ +
Sbjct: 117 CRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNT-KVFFLESPTNPTLEVIDIAAVAKI 175
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
++ GA + +D FATPL QK L LGA +V++SATK I G L G + + +
Sbjct: 176 ANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEE-- 233
Query: 382 NLHHVL---GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438
+L G +L+P A+ +++G++TL +RV+QQ +A +A L HPKV RV YPG
Sbjct: 234 HLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGR 293
Query: 439 KSHPEHHIATQQMTGFGGVVSFEV 462
HP+ I +QMTG +V+FE+
Sbjct: 294 ADHPQADIIAKQMTGGSTLVAFEL 317
|
Length = 398 |
| >gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 1e-68
Identities = 102/260 (39%), Positives = 144/260 (55%), Gaps = 6/260 (2%)
Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
YGR NPT +E + LEGAE ++ SGM+A T +L AL+ G +V D Y + R
Sbjct: 45 YGRASNPTWRALEAALGELEGAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVR 103
Query: 264 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
L +G+T A M EAAL L E+P+NP L D+ ++ H
Sbjct: 104 ALAREYLAPLGVTVREAPTAGM--AEAALAG--ADLVLAETPSNPGLDVCDLAALAAAAH 159
Query: 324 KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRN 382
GA++ +D T ATPL Q+ L LGADLV+ S TK + GH+D+L G ++G +L+ +
Sbjct: 160 AAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER 219
Query: 383 LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 442
+ G P A+L R + TL LR +Q + AL +A++L HP V+ V YPGL P
Sbjct: 220 WRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDP 279
Query: 443 EHHIATQQMTGFGGVVSFEV 462
H +A +QM FGG+VSFE+
Sbjct: 280 AHEVAARQMRRFGGLVSFEL 299
|
Length = 366 |
| >gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 9e-68
Identities = 110/265 (41%), Positives = 160/265 (60%), Gaps = 10/265 (3%)
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
F Y RYGNPT + EE++ +EGAE+ ASGMSA L AL+ AG +V +
Sbjct: 62 FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGS 121
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
+ +LP+ G+ +D D+ E AL+ ++FF E+P+NP VD+ VS+L
Sbjct: 122 CFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF-ETPSNPMQSLVDIAAVSEL 180
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-----GKL 376
H GA V +D FATPL Q+ L LGAD+V++S TK I G VL G+I G G +
Sbjct: 181 AHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPV 240
Query: 377 VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 436
+R+ G AL+ A+++++G++TL LRV+ N++ALR+A+ LE HP V+ V YP
Sbjct: 241 QKLMRHT----GPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYP 296
Query: 437 GLKSHPEHHIATQQMTGFGGVVSFE 461
L SHP++ +A +QM+G G VV+FE
Sbjct: 297 FLPSHPQYDLAKRQMSGGGTVVTFE 321
|
Length = 403 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-67
Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 14/300 (4%)
Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
G+ +D + P+ ++ Y F F E R +++Y R GNPT ++++ ++ L
Sbjct: 12 GLNSDTQYGCVVPPIYLSTTYNFT------GFNEPR--AYDYSRSGNPTRDLLQQALAEL 63
Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
EG V+ +GMSA ++ AL+ +V DCY T + + K +D
Sbjct: 64 EGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123
Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
D + L AAL L E+P+NP LR VD+ + L GA+V +D TF +P Q
Sbjct: 124 GDEQALRAALAQK-PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN 182
Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
L+LGADLVLHS TK++ GH+DV+AG+ I+ ++ ++ + LG +YL +R
Sbjct: 183 PLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242
Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
G++TL R++ Q A + + L+ P VK+++YPGL HP H IA +Q GFG ++SFE
Sbjct: 243 GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFE 302
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 5e-67
Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 10/307 (3%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
IH G ++T P+ TS + F+ + S+ Y R GNPT + E
Sbjct: 10 LIHHGYT--SEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFE 67
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
E+M+ LEG E + SGM+A + L+ + AG HI+ + Y T F+E + K IT
Sbjct: 68 ERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMIT 127
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
+ D +E + N L F E+P NP ++ +D+K V + + G +V +D TF
Sbjct: 128 HSFCDMETEADIENKIRPNTK-LIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNA 395
+P Q+ L LG D V+HSATK+IGGH DV+AG + L +IR + +GG + P
Sbjct: 187 SPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFD 246
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
A+L++RG+KTL +R+ + A ++ L+ H V+ V Y PE +A++QM G
Sbjct: 247 AWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWY------PEGELASRQMKRGG 300
Query: 456 GVVSFEV 462
GV+SF +
Sbjct: 301 GVISFSI 307
|
Length = 386 |
| >gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 6e-66
Identities = 106/313 (33%), Positives = 170/313 (54%), Gaps = 26/313 (8%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
A+ P+ + Y ++ +LID + ++ F Y R G PTT +E K++ +EG TV
Sbjct: 9 AVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCF 68
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
A+GM+A + L L+ AG H+V++ + T T L +G+ T++D D++ + AA
Sbjct: 69 ATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAA 127
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
+ N + F E+ NP + D+ + LC ++G + +D T +P + +GA LV
Sbjct: 128 IRPNT-RMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLV 186
Query: 352 LHSATKFIGGHNDVLAGSISGSGKL---------------------VTQIRN--LHHVLG 388
++S +K+I GH + L G+++ +G +TQIR L +G
Sbjct: 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRD-MG 245
Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
L+ AA+ I G +TL LRV + S AL +A+ LEAHPKV RV+YPGL SHP+H AT
Sbjct: 246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARAT 305
Query: 449 QQMTGFGGVVSFE 461
+ +GG++SFE
Sbjct: 306 ELFRHYGGLLSFE 318
|
Length = 397 |
| >gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-64
Identities = 113/311 (36%), Positives = 168/311 (54%), Gaps = 21/311 (6%)
Query: 157 AIHAGE----RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
A+ +GE R G +TTP+ TS + + + + R + Y R+GNPT
Sbjct: 13 AVQSGELRDPRFGN------VTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTV 66
Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
EEK + LE AE + +SGM A T +L+L+ G I++ +D Y +T F VL
Sbjct: 67 QAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT 126
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
+GI ID + L+ + +N L + ES TNP L+ D+K VS CH+ IV D
Sbjct: 127 LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHENDVIV--D 182
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGAL 391
TFA+P NQ L LGAD+V+HSATK+I GH+DV+ G + K + + LG
Sbjct: 183 ATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNP 242
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
+P AYL +RG+KTL LR+++ N + +A+ L K+ V+YP + I + +
Sbjct: 243 DPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVL 296
Query: 452 TGFGGVVSFEV 462
GFGG++SFE+
Sbjct: 297 RGFGGMLSFEL 307
|
Length = 384 |
| >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 4e-61
Identities = 92/270 (34%), Positives = 150/270 (55%), Gaps = 11/270 (4%)
Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
T + PV ++AY + E F+Y R GNPT V+E+ ++ LEG +
Sbjct: 19 RTGTVNPPVYFSTAYRHEGIGE--------STGFDYSRTGNPTRGVLEQAIADLEGGDQG 70
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
+SGM+A + +++L +G ++ ++D Y T E K + ++ A ++ +
Sbjct: 71 FACSSGMAAIQL-VMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAI 129
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
E A+ N ++F E+PTNP ++ D+ ++ + K G ++ +D TF TP+ Q+ L GA
Sbjct: 130 EQAITPNTKAIFI-ETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGA 188
Query: 349 DLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
D+V+HSATK++GGHNDVLAG + G+ L ++ + G L+P ++L+IRGMKTL
Sbjct: 189 DIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA 248
Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPG 437
LR++Q A +A L P V V YPG
Sbjct: 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPG 278
|
Length = 366 |
| >gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 7e-61
Identities = 96/288 (33%), Positives = 153/288 (53%), Gaps = 5/288 (1%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
+ PVV+ S F + R + YG G PTT + + + ALEG+ T+++
Sbjct: 31 VNPPVVHASTVLFPDAETM----ATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVP 86
Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
SG++A TV L + G H + Y TR F +T+L ++G+ DP G+ L
Sbjct: 87 SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAK-L 145
Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
N + TE+P + D+ +++ H+ GAIV +D T+ATPL + L G D+ +
Sbjct: 146 MRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISI 205
Query: 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 412
H+ATK+ GH+D+L G++S + K Q+ H LG P+ Y I+RG++T+ +R++
Sbjct: 206 HAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGIRLEH 265
Query: 413 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
+AL +A+ LE P V RV +P L S P H I + +G G+ SF
Sbjct: 266 HRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSF 313
|
Length = 395 |
| >gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 5e-60
Identities = 115/342 (33%), Positives = 185/342 (54%), Gaps = 37/342 (10%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+LAIHAG+ + + A+ P+ T++Y F+ + + + Y R NPTT V
Sbjct: 11 TLAIHAGQEIDPTTGSRAV--PIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDV 68
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
E++++ALEG + ++SG +A T +L + AG IV+++ Y T LPK+G
Sbjct: 69 FEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG 128
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
IT +DP+D E EAA+ + +L F E+ NP +D++ V+ + H+ G + +D T
Sbjct: 129 ITVKFVDPSDPENFEAAITDKTKAL-FAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 376
FA+P + + GAD+V+HSATKFIGGH + G I SGK
Sbjct: 188 FASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSY 247
Query: 377 --------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
+T+ R L LG AL+P ++L+++G++TLHLR+++ + AL +A
Sbjct: 248 HGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVA 307
Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
K LE H V+ V YPGL SHP + +A + + G G +++F +
Sbjct: 308 KFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGI 349
|
Length = 431 |
| >gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 4e-59
Identities = 97/263 (36%), Positives = 151/263 (57%), Gaps = 3/263 (1%)
Query: 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 259
++Y R GNPT +E ++ L+ A+ +SGM+A V + L+ G I+ D Y
Sbjct: 37 GPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDV-ITRLLNNGDEIIAGDDLY 95
Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319
T + V+P+ G+ +D D++ ++AAL L ESPTNP + VD++ +S
Sbjct: 96 GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPK-TKLVLLESPTNPLQKIVDIRKIS 154
Query: 320 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVT 378
++ H + A+V +D T +PL L LGAD+V HSATKF+ GH+DV+AG + ++
Sbjct: 155 EMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAK 214
Query: 379 QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438
++ L + G L P +L++RG+KTL +R+++Q A +A L HP+VK+V Y GL
Sbjct: 215 KVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGL 274
Query: 439 KSHPEHHIATQQMTGFGGVVSFE 461
SHP H+ Q G G V+SFE
Sbjct: 275 PSHPGFHLHFSQAKGAGSVLSFE 297
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 |
| >gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 2e-58
Identities = 107/342 (31%), Positives = 168/342 (49%), Gaps = 37/342 (10%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+LA+HAG T A P+ T+++ F+ + RA Y R NPT V
Sbjct: 11 TLALHAGAA--PDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAV 68
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+EE+++ALEG + ASG +A + + L+ AG HIV ++ Y + + L + G
Sbjct: 69 LEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG 128
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
I T + P D++G AA+ N L F E+ NP L +D+ V+ + H+ G + +D T
Sbjct: 129 IETTFVKPGDIDGWRAAIRPNT-RLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK---LVTQIRNL 383
F TP + GADLV HSATKF+GGH + G + SGK L
Sbjct: 188 FTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF 247
Query: 384 HHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
H + G L+P A+ +++G++TL LR+++ + ++
Sbjct: 248 HGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVV 307
Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
L +HP V RV +P L+SHP+H +A + + G G V SF++
Sbjct: 308 AFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDL 349
|
Length = 433 |
| >gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 3e-57
Identities = 117/338 (34%), Positives = 175/338 (51%), Gaps = 36/338 (10%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
IHAG+ T+A P+ T++Y F T Y R NPT VVE+
Sbjct: 19 IHAGQ--TPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQ 76
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
+++ALEG + +++ASG +A T +L L AG HIV++ Y T LPK+GI
Sbjct: 77 RIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV 136
Query: 278 T-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
+ V DP D++ AA+ N FF E+ +NP + +D+ V+++ H+ G + +D T A
Sbjct: 137 SFVEDPDDLDAWRAAVRPNT-KAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIA 195
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIR---------NLHHV 386
TP + L GAD+V+HSATK++GGH +AG I G TQ R + H V
Sbjct: 196 TPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGV 255
Query: 387 ---------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE 425
LG A++P A+LI +G++TL LR+++ + A R+A+ LE
Sbjct: 256 VFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLE 315
Query: 426 AHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
A +V V+Y GL S P + A + G G V+SFE+
Sbjct: 316 ARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFEL 353
|
Length = 436 |
| >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-57
Identities = 103/294 (35%), Positives = 159/294 (54%), Gaps = 16/294 (5%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
+ P+ +S Y F F E R + +Y R GNPT VV+ ++ LEG V+
Sbjct: 23 VVPPIHLSSTYNF------TGFNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
+GMSA ++ + G +V DCY + +++ + +D D + L AAL
Sbjct: 75 TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
L ESP+NP LR VD+ + L + GA+ +D TF +P Q L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVL 193
Query: 353 HSATKFIGGHNDVLAGS-ISGSGKLVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHL 408
HS TK++ GH+DV+AG I+ +VT++ N V GGA + +YL++RG++TL
Sbjct: 194 HSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250
Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
R++ A + K L+ P VK++++P L + H IA +Q GFG ++SFE+
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFEL 304
|
Length = 386 |
| >gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Score = 190 bits (483), Expect = 5e-56
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 13/308 (4%)
Query: 158 IHAGE---RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
IH+G ++ P+ S F A + + YGR G T
Sbjct: 4 IHSGRQPRFSQG-----SVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFA 54
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+++ M LEG + SG++A T +LA V AG H++ Y TR F + VL +MG
Sbjct: 55 LQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMG 114
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
+ T DP E + A L N + F E+P++ D+ ++ G ++ ID T
Sbjct: 115 VDITYYDPLIGEDI-ATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394
+A L K L G D+ + + TK++ GH+D++ G++ + + Q+R +++G ++ +
Sbjct: 174 WAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD 233
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
AY +RG++TL +R++Q ++L +AK L P+V RV +P L S P H + +G
Sbjct: 234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGS 293
Query: 455 GGVVSFEV 462
G+ SF +
Sbjct: 294 SGLFSFVL 301
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377 |
| >gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 7e-56
Identities = 123/314 (39%), Positives = 179/314 (57%), Gaps = 26/314 (8%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
A+ AG + R A+T P+V +S + F F KR+ ++Y R GNPT ++
Sbjct: 17 AVRAG--IDRDTAYGAVTPPIVLSSNFSFDG------FGNKRQ--YDYTRSGNPTRDLLG 66
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMG- 274
E ++ LEG VI A+GM A ++L AL+ G +V D Y + R+F L K G
Sbjct: 67 EALAELEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLF--NALAKKGH 124
Query: 275 ---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
ITA + DP L AL + L E+P+NP LR D++ V + HK GA+ +
Sbjct: 125 FALITADLTDP---RSLADALAQSP-KLVLIETPSNPLLRITDLRFVIEAAHKVGALTVV 180
Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGA 390
D TF +P QK L GADLVLHS TK+I GH+DV+ G+ ++ +L Q+ + LG
Sbjct: 181 DNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT 240
Query: 391 LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
+P A+L +RG++TL LRV Q+N+ A+ A +L+ H V +V+YPGL SHP H +A
Sbjct: 241 GSPFDAFLTLRGLRTLDARLRVHQENADAI--AALLDGHAAVNQVYYPGLASHPGHALAA 298
Query: 449 QQMTGFGGVVSFEV 462
+Q GFG ++SFE+
Sbjct: 299 RQQKGFGAMLSFEL 312
|
Length = 405 |
| >gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 2e-55
Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 23/315 (7%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEK---RR-------ASFEYGRYGNPTTVVVEEKMSA 221
A+ PV TS + F+ + DF + R+ A Y R+ +P + +VE++++
Sbjct: 35 AVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAV 94
Query: 222 LEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV-- 279
EGAES + +SGMSA LLA V G I+ + Y T + G+ A
Sbjct: 95 YEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA 154
Query: 280 --IDPADME-GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA------IVC 330
+ A + EAA VSL E+P NP VDV V + A I+
Sbjct: 155 DGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIA 214
Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA 390
D T P+ QK L GADL ++S TK++GGH+D++AG++ G L+ Q+R L +G
Sbjct: 215 CDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQ 274
Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL--KSHPEHHIAT 448
L+P++ +++ R ++TL LR+++ N A +A+ L HPKV+++HY +
Sbjct: 275 LDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK 334
Query: 449 QQMTGFGGVVSFEVC 463
+Q TG G SF++
Sbjct: 335 RQCTGAGSTFSFDIK 349
|
Length = 427 |
| >gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 1e-53
Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 4/290 (1%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVI 230
I PV S F AE+ K RA+ E YGR G PT + + LEG T +
Sbjct: 23 INPPVFRASTVVFDTVAEM-RHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
SG +A + LL+ + AG H++ CY TR + +L GI T DP EG+
Sbjct: 82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRE 141
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
L N + F ESP + + DV +S + H+ +V +D T+A+P+N + +G D+
Sbjct: 142 -LIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDI 200
Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRV 410
+ +ATK+I GH+DV+ G+ + + K Q+R +++G +P+ YL +RG++TL +R+
Sbjct: 201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRL 260
Query: 411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
Q AL++A L P+V V +P ++ P H + +G G+ SF
Sbjct: 261 AQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSF 310
|
Length = 394 |
| >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 182 bits (462), Expect = 2e-52
Identities = 111/341 (32%), Positives = 173/341 (50%), Gaps = 38/341 (11%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+LAIHAG T A+ P+ T++Y F T D + + Y R NPT V
Sbjct: 5 TLAIHAG--YSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDV 62
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+E++++ALEG + +ASGM+A T + + AG +IV+ Y T + LP++G
Sbjct: 63 LEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG 122
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
I D+ LEA ++ ++ F ES NP +D++ ++D H+ G + +D T
Sbjct: 123 IETRFAAHDDIAALEALIDERTKAV-FCESIGNPAGNIIDIQALADAAHRHGVPLIVDNT 181
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK------------LVTQIRN 382
ATP+ + GAD+V+HS TK+IGGH + G + SGK L T +
Sbjct: 182 VATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPS 241
Query: 383 LHHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420
H V +G AL+P A+LI++G++TL LR+++ AL++
Sbjct: 242 YHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKV 301
Query: 421 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSF 460
A+ L+ HP+V V Y GL HPEH +A + M G ++SF
Sbjct: 302 ARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSF 342
|
Length = 425 |
| >gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 8e-52
Identities = 100/291 (34%), Positives = 168/291 (57%), Gaps = 11/291 (3%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
DA++TP+ T+ FK+ + + ++Y R GNPT +E ++ L+ A+
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
SGM+A + + L+ G IV D Y + + V+P+ G+ ++ +++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAA 212
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
A+ L + ESPTNP + D++ ++++ H +GA+V +D + +P+ + L LGAD+
Sbjct: 213 AIGPQT-KLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 351 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
V+HSATKFI GH+DV+AG ++ G KL ++ L + G L P +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
+++Q A ++A L +HP+VK+V+Y GL HP HH+ Q G G V SF
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382
|
Length = 464 |
| >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 1e-51
Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 14/300 (4%)
Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
GI +D A+ P+ ++ Y F E+ ++Y R GNP ++E+ +S L
Sbjct: 14 GIESDSQYHAVVPPIYLSTNYGFPAFGEV--------PKYDYTRSGNPNRGLLEQTLSEL 65
Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
E + V+ G SA + + AL+ IV DCY T T K +D
Sbjct: 66 ESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125
Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
+D L+AAL L E+P+NP +R VD+ + GA+V +D TF TP+ QK
Sbjct: 126 SDAAALDAALAKKP-KLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK 184
Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
L LGAD V+HS TK+I GH+DV+ G I+ + + ++ + +G P +Y+ +R
Sbjct: 185 PLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLR 244
Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
G++TL R++ +A ++ L+ V +++P L HP H IA +Q +GFG ++SFE
Sbjct: 245 GIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFE 304
|
Length = 388 |
| >gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 1e-50
Identities = 95/269 (35%), Positives = 150/269 (55%), Gaps = 11/269 (4%)
Query: 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 258
R + Y R+ NPT + + +M+ALEG E+ ASGMSA + +LL L +GGH+V +
Sbjct: 65 RDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTL 124
Query: 259 YRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKL 317
Y T + LP K IT T +D D+E ++ A+ + + ES +NP L D+
Sbjct: 125 YGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPE 184
Query: 318 VSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 377
++ + H+KG V +D TFA P+ LGAD+V+HS +KFI G D++AG++ G +LV
Sbjct: 185 LARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELV 243
Query: 378 TQIRNLHH----VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433
+ +LHH +LG +NP A+ + + L LR+++ A+ AK ++ +V
Sbjct: 244 NSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKV 301
Query: 434 HYPGLKSHPEHHIATQQMT---GFGGVVS 459
YPGL+ HP+H + GFGG++
Sbjct: 302 IYPGLEDHPQHALLKSMANKGYGFGGLLC 330
|
Length = 418 |
| >gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-46
Identities = 108/351 (30%), Positives = 167/351 (47%), Gaps = 55/351 (15%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYGNPT 211
+IHAG+ + T A P+ T++Y F +AE K+R + E Y R NPT
Sbjct: 18 SIHAGQSVDSD--TSARNLPIYQTTSYVFD-SAE----HAKQRFALEDLGPIYSRLTNPT 70
Query: 212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271
+E ++++LEG V ASG +A T +L L AG HIVT+ Y T L
Sbjct: 71 VEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN 130
Query: 272 KMGITAT-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
++GI T V +P D E +AA+ N + FF E+ NP +D+ V+++ H+ +
Sbjct: 131 RLGIEVTFVENPDDPESWQAAVQPNTKA-FFGETFANPQADVLDIPAVAEVAHRNQVPLI 189
Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGG 389
+D T AT + L LGAD+V+ S TKF G+ L G + GK T R+ V
Sbjct: 190 VDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPY 249
Query: 390 ALNPNAAY-----------------------------------LIIRGMKTLHLRVQQQN 414
+ P+ AY + +G+ TL LR+++ N
Sbjct: 250 FVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHN 309
Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF---GGVVSFEV 462
A+++A+ L H KV +V++ GLK P + AT++ G G V+SF++
Sbjct: 310 ENAIKVAEFLNNHEKVAKVNFAGLKDSPWY--ATKEKLGLKYTGSVLSFDI 358
|
Length = 437 |
| >gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-45
Identities = 98/295 (33%), Positives = 155/295 (52%), Gaps = 31/295 (10%)
Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
T A+ TP+ F T + +F + F+Y R NPT +EE ++A+E A+ +
Sbjct: 22 TGALVTPL------HFSTTYQHPEFG--QSTGFDYTRTKNPTRAKLEETLAAIESADYAL 73
Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVIDPADMEGL 288
+SGMSA V+ ++ P G +V D Y + R F + K G + E +
Sbjct: 74 ATSSGMSA-IVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQ--EKEGRFHFTYANTEEELI 130
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
A + + + E+PTNP + D++ V+ L H KGA V +D TF +P+ Q+ + LGA
Sbjct: 131 AAI--EEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGA 188
Query: 349 DLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
D+VLHSATK++ GHNDVLAG ++ +L ++ + G L+P +YL++RG+KTL
Sbjct: 189 DIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS 248
Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
LR+++ + A + L+ P VK V Y G GG++SF+V
Sbjct: 249 LRMERSTANAQEVVAFLKKSPAVKEVLYTGK----------------GGMISFKV 287
|
Length = 364 |
| >gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 5e-44
Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 2/291 (0%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
+ TPV S F A + ++ + YG + PT++ + ++++ +EG ++
Sbjct: 26 RSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALL 85
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
SG++A +++ LV AG ++ + Y R E + GIT DP G+ A
Sbjct: 86 QPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGI-A 144
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
L N L + E+P + + DV ++ +G + ID T++ L K G D+
Sbjct: 145 DLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDI 204
Query: 351 VLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
+ + TK+ G +DVL G+ I+ +L +++ LG ++ + L++RG+ +L +R
Sbjct: 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVR 264
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
+ + +AL +A+ L+A P++ V +P L P H + TG GG+ S
Sbjct: 265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSV 315
|
Length = 394 |
| >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 47/345 (13%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFE--YGRYGN 209
+LA+HAG + T A TP+ T+++ F A L + F Y R N
Sbjct: 10 TLAVHAGAQ--PDPTTGARATPIYQTTSFVFNDADHAASLFGLQA-----FGNIYTRITN 62
Query: 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 269
PT V+EE+++ALEG + + +ASG +A ++ L+ G + Y +
Sbjct: 63 PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHA 122
Query: 270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329
G D D E A+ ++F ES NP D+ ++++ H+ G +
Sbjct: 123 FKSFGWQVRWADADDPASFERAITPRTKAIFI-ESIANPGGTVTDIAAIAEVAHRAGLPL 181
Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK--LVTQ 379
+D T A+P + + GAD+V+HS TKF+GGH + + G I S SGK ++++
Sbjct: 182 IVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSE 241
Query: 380 IRNLHHV-----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNST 416
R +H LG A++P A+LI+ G++TL LR+Q+ +
Sbjct: 242 PRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDN 301
Query: 417 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSF 460
AL +A+ L+ HPKV V+Y GL P H +A + G G V +F
Sbjct: 302 ALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTF 346
|
Length = 427 |
| >gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 5/271 (1%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
+ RA+ E YGR G T ++E M LEG + G +A +LA V G H++
Sbjct: 47 RNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
T Y T+ F +L K+G+T T DP + A L N + F ESP + + D
Sbjct: 107 TGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI-AKLIQPNTKVVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
V + A++ ID T+A + KAL G D+ + + TK++ GH+D + G+
Sbjct: 166 VPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVA 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432
+ + Q+R +++G ++ + AY+ RG++TL +R++Q ++L++A+ L HP+V R
Sbjct: 226 NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVAR 285
Query: 433 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463
V++P L H + TG G+ SF +
Sbjct: 286 VNHPALPGCKGHEFWKRDFTGSSGLFSFVLK 316
|
Length = 395 |
| >gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 132 bits (332), Expect = 6e-34
Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 33/320 (10%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
P+ ++ Y + + +L + Y R GNPT E+K++ LEG V ASG
Sbjct: 27 PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
+A + +L + +G H++ ++ Y T L K+GI T +P AL N+
Sbjct: 87 AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
L + ES NP + ++ K SD + +D T ATP +A GA++++HS
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206
Query: 356 TKFIGGHNDVLAGSISGSG----------KLVTQIRNLHHV------------------- 386
TK+I GH L G + G +LV + H V
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266
Query: 387 ---LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 443
G ++P AY+ G++TLHLR+++ + AL +AK L H +++ V+YPGL S+
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326
Query: 444 HHIATQQMT-GFGGVVSFEV 462
+ +A + + G GV++F +
Sbjct: 327 YSLAQKYLKKGASGVLTFGI 346
|
Length = 432 |
| >gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 24/162 (14%)
Query: 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----Q 341
E A+N N L S F + + + ++ H+KG V +D ++ +
Sbjct: 148 DYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLR 207
Query: 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----------------LHH 385
+AL+LGADLV S K +GG AG I G +L+ ++++ L
Sbjct: 208 EALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEA 264
Query: 386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427
L L P +R ++ L + + A R+A +
Sbjct: 265 ALELYLQPEILGERLRTLRLLTQPAEALLAQAGRLAVVELDP 306
|
Length = 395 |
| >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 216 EEKMSALEGAESTVIMASGMSAST-VMLLALVPAGGHIVTTTDCYRK----------TRI 264
+E + GA+ T + +G S+S ++LA+ G I+ +C++ +
Sbjct: 65 QELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPV 124
Query: 265 FIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
+++ P GI A I P + +A + + + +PT + C +++ + + H
Sbjct: 125 YLKPERNPYYGI-AGGIPPETFK--KALIEHPDAKAAVITNPT-YYGICYNLRKIVEEAH 180
Query: 324 KKGAIVCID---GT---FATPLNQKALSLGADLVLHSATKFIGG 361
+G V +D G F L A GAD+V+ S K +
Sbjct: 181 HRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA 224
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 216 EEKMSAL--EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
EEK++ L G + V + SG A+ LLAL+ G ++ + + +R ++ L
Sbjct: 6 EEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGH-GSRYWVAAELAGA 64
Query: 274 GITATVIDPADMEG-----LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI 328
+D A G LE NV+L T V +K + + + G +
Sbjct: 65 KPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGIL 124
Query: 329 VCIDGTFATPLNQKALSL----GADLVLHSATKFIGG 361
+ +D A + L GAD+V S K +GG
Sbjct: 125 LLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG 161
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 36/172 (20%)
Query: 289 EAALNNNNVSLFFTESPTNP----FLRCVDVKLVSDLCHKKGAIV--------CID---- 332
E A+N N L + +N F + V + + L + G V +D
Sbjct: 130 EQAINENTALLMKVHT-SNYRIQGFTKEVSLAELVALGKEHGLPVYYDLGSGSLVDLSQY 188
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---------- 382
G P Q+ L+LG DLV S K +GG AG I G +L+ +++
Sbjct: 189 GLPKEPTVQELLALGVDLVSFSGDKLLGG---PQAGIIVGKKELIERLKKNPLKRALRVD 245
Query: 383 ------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 428
L L LNP Y I ++ L +++ + A R+ K+L+A
Sbjct: 246 KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKARL 297
|
Length = 367 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 39/253 (15%)
Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
YG G+PT +E++++ L G E+ + + SG A+ + L+A G ++ C
Sbjct: 28 YG--GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVI----CGEPAH 81
Query: 264 IFI-ETVLPKM--GITATVIDPA-----DMEGLEAAL------NNNNVSLFFTESPTNPF 309
I+ ET G + A D+E LEAA+ + L E+ N
Sbjct: 82 IYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSA 141
Query: 310 L-RCV---DVKLVSDLCHKKGAIVCIDGT-F---ATPLNQ--KALSLGADLVLHSATKFI 359
+ V +++ + + + G + +DG A L K ++ AD V S +K +
Sbjct: 142 GGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGL 201
Query: 360 GGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL---RVQQQNS 415
G GS+ +GS + R LGG + A L G++ L R+ + ++
Sbjct: 202 G----APVGSVLAGSDDFIAYARRQRKYLGGGMR-QAGVLAAAGLRALEEGVARLGRDHA 256
Query: 416 TALRMAKILEAHP 428
TA R+A+ LE
Sbjct: 257 TARRLAEGLELLR 269
|
Length = 288 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTF-------ATPLNQ 341
LNN N L F SP NP + +S++C KKGA++ ID F A
Sbjct: 118 LNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVL 177
Query: 342 KALSLGADLVLHSATKFIG 360
S G ++ S TK +G
Sbjct: 178 LNRSYGNVIIGRSLTKILG 196
|
Length = 332 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 17/160 (10%)
Query: 215 VEEKMSALEGAEST--VIMASGMSAS--TVM--LLALVPAGGHIVTTTDCYRKTRIFIET 268
EK++ A S +I SG + + V L + G I+ T + + +
Sbjct: 48 AREKVAEFINAPSDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQE 107
Query: 269 VLPKMGITATVI--DPA---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
+ + G T VI DP D++ LE L + T +N V+ + L H
Sbjct: 108 LAKRTGATVRVIPVDPNGLLDLDALEKLLTPRTKLVAITHV-SNVTGTVNPVEEIGKLAH 166
Query: 324 KKGAIVCIDGTFA---TPLNQKALSLGADLVLHSATKFIG 360
+ GA+V +D A P++ +A LG D + S K G
Sbjct: 167 EYGALVVVDAAQAVGHRPIDVQA--LGVDFLAFSGHKLYG 204
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 100.0 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 100.0 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 100.0 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 100.0 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 100.0 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 100.0 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 100.0 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 100.0 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 100.0 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 100.0 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 100.0 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 100.0 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 100.0 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 100.0 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 100.0 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PLN02509 | 464 | cystathionine beta-lyase | 100.0 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 100.0 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 100.0 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 100.0 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 100.0 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 100.0 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 100.0 | |
| PLN02242 | 418 | methionine gamma-lyase | 100.0 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 100.0 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.94 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.93 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.92 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.92 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.92 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.9 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK07324 | 373 | transaminase; Validated | 99.89 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.89 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.89 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.89 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.89 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.88 | |
| PLN02721 | 353 | threonine aldolase | 99.88 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.88 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.88 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.88 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.88 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.88 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.88 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.88 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.87 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.87 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.87 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.87 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.87 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.87 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.87 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.87 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.87 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.87 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.86 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.86 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.86 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.86 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.86 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.86 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.86 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.86 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.86 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.86 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.86 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.86 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.86 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.86 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.86 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.86 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.86 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.86 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.86 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.86 | |
| PLN02187 | 462 | rooty/superroot1 | 99.86 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.86 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.85 | |
| PLN02656 | 409 | tyrosine transaminase | 99.85 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.85 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.85 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.85 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.85 | |
| PLN02368 | 407 | alanine transaminase | 99.85 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.85 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.85 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.85 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.85 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.85 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.85 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.85 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.85 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.85 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.85 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.85 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.85 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.85 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.84 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.84 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.84 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.84 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.84 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.84 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.84 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.84 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.84 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.84 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.84 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.84 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.84 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.84 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.84 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.83 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.83 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.83 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.83 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.83 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.83 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.83 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.83 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.83 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.83 | |
| PLN02651 | 364 | cysteine desulfurase | 99.83 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.83 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.83 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.83 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.82 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.82 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.82 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.82 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.82 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.82 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.82 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.82 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.82 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.81 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.81 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.81 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.8 | |
| PLN02231 | 534 | alanine transaminase | 99.8 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.8 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.8 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.8 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.8 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.8 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.8 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.79 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.79 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.79 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.79 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.79 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.79 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.79 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.79 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.79 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.79 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.78 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.78 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.78 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.78 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.78 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.78 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.78 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.78 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.77 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.77 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.77 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.77 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.76 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.76 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.75 | |
| PLN02397 | 423 | aspartate transaminase | 99.75 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.74 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.74 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.74 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.74 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.74 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.74 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.73 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.73 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.73 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.72 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.71 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.71 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.71 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.71 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.7 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.7 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.69 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.69 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.69 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.68 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.68 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.68 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.67 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.67 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.67 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.67 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.66 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.66 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.65 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.64 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.63 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.63 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.62 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.62 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.59 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.59 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.59 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.58 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.57 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.56 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.55 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.55 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.55 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.54 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.53 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.53 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.53 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.52 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.51 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.51 | |
| PLN02263 | 470 | serine decarboxylase | 99.5 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.5 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.48 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.47 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.47 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.47 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.45 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.45 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.45 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.44 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.44 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.44 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.44 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.44 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.44 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.43 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.42 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.39 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.38 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.38 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.37 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.37 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.37 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.37 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.36 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.36 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.35 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.34 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.33 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.33 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.33 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.32 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.32 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.32 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.32 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.31 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.31 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.3 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.29 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.29 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.28 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.26 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.26 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.25 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.24 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.24 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.23 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.22 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.21 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.2 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.2 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.2 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.19 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.19 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.19 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.19 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.19 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.18 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.18 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.18 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.17 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.16 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.16 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.15 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.15 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.14 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.12 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.12 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.12 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.12 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.11 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.11 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.11 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.1 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.1 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.09 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.09 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.08 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.07 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.07 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.07 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.06 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.05 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.04 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.02 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.02 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.99 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.99 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 98.99 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 98.99 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.98 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.97 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.94 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.93 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.91 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.89 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.88 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.84 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.84 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 98.84 | |
| PLN02452 | 365 | phosphoserine transaminase | 98.83 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 98.78 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.74 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 98.74 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 98.71 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 98.7 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.68 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.68 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 98.66 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.65 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.62 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.32 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.27 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.16 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.13 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 97.96 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.85 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.67 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.66 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.58 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.13 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.01 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.0 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.48 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 95.83 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 94.97 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 90.77 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 87.34 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 82.28 |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=541.76 Aligned_cols=311 Identities=42% Similarity=0.710 Sum_probs=291.3
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
++.|+++|.|+..+ ..++++++|||++|||.|++.++..+.+.+...+|.|+|.+||++..||++++.++|++.++.+
T Consensus 7 ~~~T~~v~~g~~~~--~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af 84 (396)
T COG0626 7 SLTTRLVHAGRRPD--DLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF 84 (396)
T ss_pred ccceeeEEcccccc--cCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence 58899999997653 4689999999999999999998877777677788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+||.+++.+++++||+||+++..|++++.++..+++++|++++++|..+.+++++++.+.+|++||+|+|+||+.+
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~ 164 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE 164 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999988888888887434999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHH-HhCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH-VLGG 389 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~-~~G~ 389 (466)
+.||++|+++||++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++++. ++.+.+....+ .+|.
T Consensus 165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~ 244 (396)
T COG0626 165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA 244 (396)
T ss_pred cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999888765 45556555555 5999
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.++|++||+++||++||..||+++++||+++++||++||.|++|+||||++||+|++++|||+|+||||||+|++
T Consensus 245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 245 VLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=528.07 Aligned_cols=308 Identities=44% Similarity=0.779 Sum_probs=277.8
Q ss_pred cccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 012321 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS 233 (466)
Q Consensus 154 ~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~S 233 (466)
+|++||+|+..+. ..+++++||||+|+||.|++.+++ +.+.+...+|.|+|++||++..||++|++++|++.+++++|
T Consensus 1 ~T~~vh~g~~~~~-~~~~~v~~pi~~sstf~~~~~~~~-~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~S 78 (386)
T PF01053_consen 1 ETLLVHAGRDPDE-DQTGAVNPPIYQSSTFVFDSAEEL-DAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSS 78 (386)
T ss_dssp HHHHHHTTTTGGT-STTTBSS--B---SBBBBSSHHHH-HHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESS
T ss_pred CcceEeCCCCCCC-CCCCCeeCCccccccCcccchHHH-HhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccc
Confidence 4889999987632 357899999999999999999998 77888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc
Q 012321 234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV 313 (466)
Q Consensus 234 G~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~ 313 (466)
||+||.+++.+++++||+|++.+..|++++.+++..++.+|+++.++|..|+++|+++++++ |++||+|+|+||++.+.
T Consensus 79 GmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~-t~~v~~EspsNP~l~v~ 157 (386)
T PF01053_consen 79 GMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPN-TKLVFLESPSNPTLEVP 157 (386)
T ss_dssp HHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTT-EEEEEEESSBTTTTB--
T ss_pred hHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhcccc-ceEEEEEcCCCcccccc
Confidence 99999999999999999999999999999999998899999999999999999999999984 99999999999999999
Q ss_pred cHHHHHHHHHhcC-CEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh--HHHHHHHHHHHHhCCC
Q 012321 314 DVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHVLGGA 390 (466)
Q Consensus 314 dl~~I~ela~~~g-illIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~--eli~~l~~~~~~~G~~ 390 (466)
|+++|+++||++| ++++||+||++|++++|+.+|+|++++|+|||++||+|+++|+++.++ +++++++..+..+|..
T Consensus 158 Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~ 237 (386)
T PF01053_consen 158 DLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGAT 237 (386)
T ss_dssp -HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B
T ss_pred cHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCcc
Confidence 9999999999999 999999999999999999999999999999999999999999999764 7889999999999999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++|++||+++|+++|+..||+++++|+++|+++|++||.|++|+||+|++||+|+++++||.|+||||||+|++
T Consensus 238 ~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~ 311 (386)
T PF01053_consen 238 LSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG 311 (386)
T ss_dssp --HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-65 Score=503.47 Aligned_cols=309 Identities=38% Similarity=0.626 Sum_probs=290.9
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+|+|+++|+|+. + ..+++..+|||+|++|.|++.+...+.|..+..+|.|+|..||+...||++|+.++|+-.++.+
T Consensus 7 ~f~T~~vHag~~-d--~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~ 83 (426)
T COG2873 7 GFETLAVHAGQE-D--PTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV 83 (426)
T ss_pred CcchhhhcCCCC-C--CCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence 599999999987 2 4688999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
.|||+|+..++..++++||+|+.....|++++.++...++++||+++++|..|++.++++|+++ ||+||+|+..||-+.
T Consensus 84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~n-Tkavf~EtigNP~~~ 162 (426)
T COG2873 84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDEN-TKAVFAETIGNPGLD 162 (426)
T ss_pred ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcc-cceEEEEeccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh--H--------------
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--K-------------- 375 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~--e-------------- 375 (466)
+.|+++|+++||++|+++|||||+++|++.+|+++|+|||+||+|||++|||..+||+|+-.. +
T Consensus 163 v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~ 242 (426)
T COG2873 163 VLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD 242 (426)
T ss_pred ccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999997210 0
Q ss_pred -------HHH---------HHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 376 -------LVT---------QIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 376 -------li~---------~l~-~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
+.+ +.| ...+.+|.+++|+++|+++.|++||.+||+||++|+.++++||++||+|.+|+||||
T Consensus 243 p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL 322 (426)
T COG2873 243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGL 322 (426)
T ss_pred ccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCC
Confidence 111 222 345678999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHhhc-CCcceEEEEEece
Q 012321 439 KSHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 439 ~s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
++||.|++++|++ +|+|+||||++||
T Consensus 323 ~~~~~h~la~kyl~~g~g~vltF~~kg 349 (426)
T COG2873 323 ASHPYHALAKKYLPKGAGAVLTFGVKG 349 (426)
T ss_pred CCCcchhHHHhhccCCCceEEEEEecC
Confidence 9999999999999 8999999999987
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=518.10 Aligned_cols=310 Identities=27% Similarity=0.457 Sum_probs=291.0
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhccc-CCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
+++|+++|.|... ...+++++||||+++||.|++.+++.+.+.++. .+|.|+|.+||+++.||++|++++|++.+++
T Consensus 5 ~~~t~~~~~~~~~--~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~ 82 (395)
T PRK08114 5 KLDTQLVNAGRSK--KYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCAL 82 (395)
T ss_pred CcchheEeCCCCC--CCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence 4779999999532 223479999999999999999998887775543 4699999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+||.+++.+++++||+||+++..|++++.++...++++|+++++++..|.++++++++++ ||+|++|+|+||+|
T Consensus 83 ~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~-TrlV~~EtpsNp~~ 161 (395)
T PRK08114 83 YPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPN-TKVVFLESPGSITM 161 (395)
T ss_pred EhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCC
Confidence 99999999999999999999999999999999999988889999999999999999999999875 99999999999999
Q ss_pred ccccHHHHHHHHHhcC--CEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC
Q 012321 311 RCVDVKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG 388 (466)
Q Consensus 311 ~v~dl~~I~ela~~~g--illIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G 388 (466)
.+.|+++|+++||++| ++++||+|+++++.++|+++|+|++++|+|||++||+|+++|+++.++++.++++..+..+|
T Consensus 162 ~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G 241 (395)
T PRK08114 162 EVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMG 241 (395)
T ss_pred EeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhcc
Confidence 9999999999999984 99999999999999999999999999999999999999999999988888888888888899
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++|+++|+++|||+||..||+++++|+..++++|++||.|++|+||||++||+|+++++||+|+||||||++++
T Consensus 242 ~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 242 QMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=502.71 Aligned_cols=306 Identities=32% Similarity=0.578 Sum_probs=286.4
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ ..+++++||||+|+||.|++.+++.. ...+|.|+|.+||+++.||++|+.+++++.++++
T Consensus 12 ~~~t~~~~~~~~~~--~~~~~~~~Pi~~sst~~~~~~~~~~~----~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~ 85 (395)
T PRK05967 12 GINTRLAHDGNDPG--DYHGFVNPPVVHASTVLFPDAETMAT----RGQKYTYGTRGTPTTDALCKAIDALEGSAGTILV 85 (395)
T ss_pred CcccceeeCCCCCC--CCCCCccCCccCCcceecCChHHhhc----ccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEE
Confidence 36799999996532 34689999999999999999887643 2347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+.+++.+++++||+||++++.|++++.++...++.+|+++++++..+.++++++++++ ||+|++|+|+||++.
T Consensus 86 sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~-TklV~lesPsNP~l~ 164 (395)
T PRK05967 86 PSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPN-TKVVHTEAPGSNTFE 164 (395)
T ss_pred CcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcC-ceEEEEECCCCCCCc
Confidence 9999999999999999999999999999999888877888999999999887788899999875 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l 391 (466)
+.|+++|+++||++|+++|+|++|++++.++|+++|+|++++|+|||++||+|+++|++++++++.++++.....+|..+
T Consensus 165 v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~ 244 (395)
T PRK05967 165 MQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCA 244 (395)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888887888899999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+|++||+++||++||..||+++++|+..|+++|++||+|++|+||||++||+|+++++||+|+||||||+|++
T Consensus 245 ~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK05967 245 GPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAA 317 (395)
T ss_pred CHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=500.57 Aligned_cols=309 Identities=30% Similarity=0.554 Sum_probs=287.2
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhccc-CCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
+++|+++|.|... ...+++++||||+|+||.|++.+++.+.+.+.. .+|.|+|.++|+...||++|+++++++++++
T Consensus 4 ~~~t~~~~~~~~~--~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~ 81 (394)
T PRK09028 4 KKATKIVSAGRDK--KWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81 (394)
T ss_pred CccceeEEcCCCC--CCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 3779999999433 223478999999999999999988776654432 4589999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+|+.+++.+++++||+||++++.|+++..++...++.+|+++.+++..+.++++++++++ ||+|++|+|+||+|
T Consensus 82 ~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~-TklV~lespsNPtg 160 (394)
T PRK09028 82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPN-TKVLFLESPGSITM 160 (394)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCC
Confidence 99999999999999999999999999999999888877778899999999887888999999874 99999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ 390 (466)
.+.|+++|+++||++|+++++|++|++++.++|+++|+|++++|+|||++||+|+++|+++.++++.++++..+..+|.+
T Consensus 161 ~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~ 240 (394)
T PRK09028 161 EVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQC 240 (394)
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888889999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEec
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~ 463 (466)
++|+++|+++|||+||..||+++++|+..++++|++||.|++|+||||++||+|+++++||+|+||||||+++
T Consensus 241 ~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 241 TSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred CCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=488.33 Aligned_cols=302 Identities=31% Similarity=0.534 Sum_probs=280.3
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|..++ ..+++++||||+|+||.|++.. ...+|.|+|++||+++.||++||+++|.+.++++
T Consensus 5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~--------~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt 74 (388)
T PRK08861 5 KPATIAVRTGIESD--SQYHAVVPPIYLSTNYGFPAFG--------EVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVT 74 (388)
T ss_pred CcccceeECCCCCC--CCCCCccCCcccCcceEeCCcC--------ccCCccccCCCCchHHHHHHHHHHHhCCCeEEEE
Confidence 47899999996543 2357999999999999999842 2347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++|+.+++.+++++||+|+++++.|++++.++...+...|+++.+++..|+++++++++++ |++|++|+|+||||.
T Consensus 75 ~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~-tklV~lesP~NPtG~ 153 (388)
T PRK08861 75 NCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKK-PKLILLETPSNPLVR 153 (388)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCc
Confidence 9999999999999999999999999999998877766666778999999988999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|+.++.++|+++|+|++++|+|||++||+|+++|+++++ +++.++++.++..+|..
T Consensus 154 v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~ 233 (388)
T PRK08861 154 VVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGAT 233 (388)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999988999999999999999999999999999999875 57778898888899999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++|+++|+++|||+||..||+++++|+.+|+++|++||.|++|+||||++||+|+++++||+|+||||||+|++
T Consensus 234 ~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 234 GTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred CChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=488.46 Aligned_cols=308 Identities=29% Similarity=0.516 Sum_probs=281.9
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|... .. +++++||||+++||.|++.+++...++....+|.|+|.++|++++||+.+++++|++.+++++
T Consensus 7 ~~t~~~~~g~~~--~~-~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~ 83 (432)
T PRK06702 7 KGTICVQGGYTP--KN-GEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATA 83 (432)
T ss_pred cchHheeCCCCC--CC-CCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEEC
Confidence 689999999643 22 579999999999999999988877766555689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
|||+||.+++.+++++||+||++.++|+++..++...+..+|++++++|. .|+++++++|+++ ||+|++|+|+||++.
T Consensus 84 SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~-Tk~I~~e~pgnP~~~ 162 (432)
T PRK06702 84 SGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDK-TKLVYAESLGNPAMN 162 (432)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcC-CeEEEEEcCCCcccc
Confidence 99999999999999999999999999999999887777889999999997 5899999999985 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh----------HH-----
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------KL----- 376 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~----------el----- 376 (466)
+.|+++|+++||++|+++|+|+||++|+.++|+++|+||+++|+|||++||+|+++|+++... ++
T Consensus 163 v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~ 242 (432)
T PRK06702 163 VLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP 242 (432)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998422 11
Q ss_pred ----------------HHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCC
Q 012321 377 ----------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 439 (466)
Q Consensus 377 ----------------i~~l~-~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~ 439 (466)
+.+.+ .....+|..++|+++|+++++|+|++.||+++++|+.+|+++|++||.|++|+||+|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~ 322 (432)
T PRK06702 243 SYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLD 322 (432)
T ss_pred cccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence 11122 3455778999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHhhc-CCcceEEEEEece
Q 012321 440 SHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 440 s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
+||+|+++++|| .|+||||||+|++
T Consensus 323 ~~p~~~l~~~~~~~g~gg~~sf~l~~ 348 (432)
T PRK06702 323 SNENYSLAQKYLKKGASGVLTFGIKG 348 (432)
T ss_pred CCccHHHHHHhCcCCCceEEEEEecC
Confidence 999999999999 7899999999975
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=475.68 Aligned_cols=313 Identities=41% Similarity=0.657 Sum_probs=287.9
Q ss_pred ccCCCccccccccCCcCCCCCCCCCccCCccccCCCccCCh-HHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCC
Q 012321 148 SFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAE 226 (466)
Q Consensus 148 ~~~~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~-~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e 226 (466)
++..+++|.++|+|+..+.. .+++++|||+.+++++|... .+.....+. .+|.|+|.+||++..||+.+++++|++
T Consensus 17 ~~~~~~~t~~~~~g~~~~~~-~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~--~~~~Ysr~~nPt~~~le~~iaal~ga~ 93 (409)
T KOG0053|consen 17 SRLSHLDTNLLHAGQDPEKA-IHNAVAPPIYATLSTTFKQDLNEGEHGGNL--DGYDYSRSGNPTRDVLESGIAALEGAA 93 (409)
T ss_pred hhccccchhhhhcccccchh-ccccccCceecccceeecccCccccccccc--cccccccCCCCchHHHHHHHHHHhCCc
Confidence 33357999999999886543 47899999997777776664 222221111 259999999999999999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCC
Q 012321 227 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 306 (466)
Q Consensus 227 ~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPs 306 (466)
.+++++|||+|+..+++.++++|++|++...+|++|+.++...++++|++..++|..|++++++++++ +|++||+|+|+
T Consensus 94 ~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPs 172 (409)
T KOG0053|consen 94 HALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPS 172 (409)
T ss_pred eEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhcc-CceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 49999999999
Q ss_pred CCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHH
Q 012321 307 NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH 385 (466)
Q Consensus 307 NPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~ 385 (466)
||++++.||++|+++||++|+++||||||+++++++|+.+|+|||++|+|||++||+|+++|+++.+ +++.++++..+.
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~ 252 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE 252 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred HhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 386 ~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.+|.+++|+++|+..|+++|+..|++++.+|+..++++|+++|+|++|+||||++||+|+++++|++|.+|+++|.+++
T Consensus 253 ~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~ 331 (409)
T KOG0053|consen 253 DLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFG 331 (409)
T ss_pred HhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877767777765
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=475.63 Aligned_cols=310 Identities=42% Similarity=0.701 Sum_probs=289.9
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|...+ ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|+++.||++|++++|.+.++++
T Consensus 8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ 85 (398)
T PRK08249 8 GVGTKAVWAGEKEY--LPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAF 85 (398)
T ss_pred CcccceeeCCCCCC--CCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence 47799999996542 3367999999999999999998777777665567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+..++.+++++||+|+++.+.|+++..++...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus 86 ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~-tklV~ie~p~NPtg~ 164 (398)
T PRK08249 86 STGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLK 164 (398)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence 9999999999999999999999999999998877777778889999999999999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l 391 (466)
+.|+++|.++||++|+++|+|++|+.++...++.+++|++++|+||+++||++.++|+++++++++++++.++...|..+
T Consensus 165 v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~ 244 (398)
T PRK08249 165 IVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM 244 (398)
T ss_pred cCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998888888888999999999999999999999999999999999998888899999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++.+|+++++++++..|++++++|++.++++|++||.|++|+||||++||+|+++++||+|+||||||+|++
T Consensus 245 s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred CHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-57 Score=471.73 Aligned_cols=309 Identities=37% Similarity=0.583 Sum_probs=287.7
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|... ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|+++.||++|++++|.++++++
T Consensus 15 ~~~t~~~~~~~~~---~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~ 91 (403)
T PRK07810 15 SQATIGVRGGLLR---SGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFAT 91 (403)
T ss_pred CcchhheeCCCCC---CCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence 4689999999643 2357899999999999999998887776665567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+..++.+++++||+||+++..|++++..+...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus 92 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~-tklV~~esp~Nptg~ 170 (403)
T PRK07810 92 ASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVP-TQAVFFETPSNPMQS 170 (403)
T ss_pred CChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCCe
Confidence 9999999999999999999999999999999888877788899999999999999999999875 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~~G~~ 390 (466)
+.|+++|+++||++|+++|+|++|+.++.++++.+|+|++++|+||+++||||++||+++++++.+. +++.+....|..
T Consensus 171 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~ 250 (403)
T PRK07810 171 LVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA 250 (403)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998889999999999999999999999999999999887665 577777788999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++|+++..|++++++|+.+++++|++||.|.+|+||||++||+|++++|||+|+|||+||+|++
T Consensus 251 ~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 251 LSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-57 Score=466.32 Aligned_cols=303 Identities=29% Similarity=0.529 Sum_probs=279.3
Q ss_pred ccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 012321 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG 234 (466)
Q Consensus 155 t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG 234 (466)
|+++|.|...+ ..+++++||||+|+||.|++.++.. ....+|.|+|.+||++..||++|++++|++++++++||
T Consensus 1 t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~----~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG 74 (377)
T TIGR01324 1 TRLIHSGRQPR--FSQGSVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSG 74 (377)
T ss_pred CeeEECCCCCC--CCCCCccCCeeCCCceeeCChhhhc----CCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcH
Confidence 56789885532 2358999999999999999864332 23457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc
Q 012321 235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314 (466)
Q Consensus 235 ~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d 314 (466)
++|+..++.+++++||+||++++.|+++..++...++.+|+++.+++..+.++++++++++ ||+|++|+|+||+|.+.|
T Consensus 75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~-tklV~lesp~Np~g~~~d 153 (377)
T TIGR01324 75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPN-TKVLFLEAPSSITFEIQD 153 (377)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCcHHH
Confidence 9999999999999999999999999998877766677789999988876668999999875 999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHH
Q 012321 315 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394 (466)
Q Consensus 315 l~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~ 394 (466)
+++|+++|+++|+++|+|++|+.+..++|+++|+|++++|++||++||+|+++|+++++++.+++++.....+|..++|+
T Consensus 154 l~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~ 233 (377)
T TIGR01324 154 IPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD 233 (377)
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888887788899999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 395 ~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++|+++++++++..||+++++|+.+++++|++||.|++|+||+|++||+|+++++||+|+||||||+|++
T Consensus 234 ~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~ 303 (377)
T TIGR01324 234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQR 303 (377)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=465.26 Aligned_cols=303 Identities=32% Similarity=0.548 Sum_probs=279.8
Q ss_pred CCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 151 ~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
++++|+++|.|...+ ..+++++||||+++||.|++.++ ..+|.|+|++||+++.|+++||+++|.+++++
T Consensus 3 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~--------~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~ 72 (386)
T PRK08045 3 RKQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFNE--------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL 72 (386)
T ss_pred CCcccceeEcCCCCC--CCCCCccCCccCCcceecCCccc--------cCCceeeCCCCccHHHHHHHHHHHhCCCeEEE
Confidence 457899999996542 23689999999999999988532 24699999999999999999999999989999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++||++|+..++.+++++||+|+++++.|++++..+.......++++.+++..|+++++++++++ +++|++|+|+||||
T Consensus 73 ~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~-tklV~l~sP~NPtG 151 (386)
T PRK08045 73 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLL 151 (386)
T ss_pred ECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccC-CeEEEEECCCCCCC
Confidence 99999999999999999999999999999998887777666677888888888999999999874 99999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG 389 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~ 389 (466)
.+.|+++|.++|+++|+++|+|++|..+..+.|+.+|+|++++|+|||++||+++++|++++ +++++++++..+..+|.
T Consensus 152 ~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~ 231 (386)
T PRK08045 152 RVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV 231 (386)
T ss_pred EecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998889999999999999999999999999999877 57888999888889999
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++++++|+++++|+++..|++++++|+.+|+++|++||.|++|+||||++||+|+++++||+|+||||||+|++
T Consensus 232 ~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred CCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=470.42 Aligned_cols=309 Identities=36% Similarity=0.605 Sum_probs=283.0
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.....+|.|+|.++|+.+.||+.|++++|.+.+++++
T Consensus 9 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~al~~~ 86 (431)
T PRK08248 9 LETLAIHAGQEID--PTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIGALAVS 86 (431)
T ss_pred cchhheeCCcCCC--CCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence 6799999996532 33679999999999999999998888776666689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+..++.+++++||+|+++++.|++++..+...++..|+++.+++..|+++++++++++ +++|++++|+||||.+
T Consensus 87 sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~-tklV~l~sp~NPtG~v 165 (431)
T PRK08248 87 SGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDK-TKALFAETIGNPKGDV 165 (431)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCcc
Confidence 999999999999999999999999999999888877788899999999999999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHH----------------
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 376 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el---------------- 376 (466)
.|+++|+++||++|+++|+|++++.+..+.|+++|+|++++|+||+++|||+++||+++.+.+.
T Consensus 166 ~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~ 245 (431)
T PRK08248 166 LDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDP 245 (431)
T ss_pred cCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCcc
Confidence 9999999999999999999999998888899999999999999999999999999998864321
Q ss_pred -----------------HHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCC
Q 012321 377 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 439 (466)
Q Consensus 377 -----------------i~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~ 439 (466)
...++.....+|..++|++||++++||+||+.|++++++|+.+|+++|++||.|++|+||||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~ 325 (431)
T PRK08248 246 SYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLP 325 (431)
T ss_pred ccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence 122334566789999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHhhc-CCcceEEEEEece
Q 012321 440 SHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 440 s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
+||+|+++++|| .|+||||||+|++
T Consensus 326 s~p~~~~~~~~~~~g~gg~~sf~l~~ 351 (431)
T PRK08248 326 SHPSYELAKKYLPKGQGAILTFGIKG 351 (431)
T ss_pred CCccHHHHHHhCcCCCceEEEEEecC
Confidence 999999999999 7899999999975
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=463.97 Aligned_cols=309 Identities=37% Similarity=0.623 Sum_probs=286.6
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|+++.||++||+++|.+.+++++
T Consensus 4 ~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~ 81 (391)
T TIGR01328 4 FATRAIHAGYPPK--DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATS 81 (391)
T ss_pred cccceeeCCccCC--CCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence 6799999996542 23589999999999999999988887776666689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+.+++.+++++||+|+++.+.|++++..+...+..+|+++.++|..|+++++++++++ |++|++|+|+||+|.+
T Consensus 82 sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~-tklV~le~p~Np~G~v 160 (391)
T TIGR01328 82 SGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDN-TKIVYFETPANPTMKL 160 (391)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccC-CeEEEEECCCCCCCcc
Confidence 999999999999999999999999999998888877788899999999999999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH--HHhCCC
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA 390 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~~~G~~ 390 (466)
.|+++|.++|+++|+++|+|++|+.++..+++..|+|++++|+||+++|++++++|+++++++++++++... ...|..
T Consensus 161 ~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~ 240 (391)
T TIGR01328 161 IDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSV 240 (391)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999988888888999999999999999999988999999999999888643 245778
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++++++..|++++++|+++++++|+++|.|++|+||||++||+|+++++||+|+||||||++++
T Consensus 241 l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 241 ISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred CCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-56 Score=468.27 Aligned_cols=309 Identities=36% Similarity=0.574 Sum_probs=281.1
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.++....+|.|+|+++|+++.||++|++++|.+.+++++
T Consensus 14 ~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~s 91 (436)
T PRK07812 14 FETKQIHAGQTPD--PATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLA 91 (436)
T ss_pred cchhheeCCCCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEc
Confidence 6799999996432 23579999999999999999988887776666679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-CCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
|||+|+.+++.+++++||+||++...|++++.++...+++.|+++.+++ ..|+++++++++++ |++|++|+|+||+|.
T Consensus 92 SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~-tklV~ie~~sNp~G~ 170 (436)
T PRK07812 92 SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPN-TKAFFAETISNPQID 170 (436)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCC-CeEEEEECCCCCCCe
Confidence 9999999999999999999999999999998887777788899999985 66899999999875 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChH----------------
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------- 375 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e---------------- 375 (466)
+.|+++|.++||++|+++|+|+++++++.++++++|+|++++|+||+++|||++++|+++.+..
T Consensus 171 v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~ 250 (436)
T PRK07812 171 VLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDP 250 (436)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999986321
Q ss_pred --------------HHHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCC
Q 012321 376 --------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440 (466)
Q Consensus 376 --------------li~~l~-~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s 440 (466)
++.+++ ..+...|..++|++||++++||+||..||+++++|+.+|+++|++||+|++|+||||++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s 330 (436)
T PRK07812 251 SYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPS 330 (436)
T ss_pred ccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence 111222 45567899999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHhhc-CCcceEEEEEece
Q 012321 441 HPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 441 ~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
||+|+++++|| .|+||||||+|+|
T Consensus 331 ~p~~~~~~~~~~~g~gg~~sf~l~~ 355 (436)
T PRK07812 331 SPWYERAKRLAPKGTGAVLSFELAG 355 (436)
T ss_pred CccHHHHHHhCcCCCceEEEEEecC
Confidence 99999999999 8899999999975
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=466.11 Aligned_cols=309 Identities=32% Similarity=0.479 Sum_probs=279.3
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.....+|.|+|.++|+++.+|+.+++++|++.+++++
T Consensus 14 ~~t~~~~~~~~~~--~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v~fs 91 (437)
T PRK05613 14 FETRSIHAGQSVD--SDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAVAFA 91 (437)
T ss_pred cchHheeCCCCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEEEeC
Confidence 6799999996542 23579999999999999999988777665445679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-CCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
|||+|+.+++.+++++||+||+++..|+++...+...+++.|+++.++| ..|+++++++++++ |++|++++++||+|.
T Consensus 92 SG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~-tk~V~~e~~~Np~~~ 170 (437)
T PRK05613 92 SGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPN-TKAFFGETFANPQAD 170 (437)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCcc-CeEEEEECCCCCCCc
Confidence 9999999999999999999999999999997777677788999999997 56899999999885 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChH----------------
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------- 375 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e---------------- 375 (466)
+.|+++|+++||++|+++|+|++++.+..++++++|+|++++|+||+++||++++||+++.+++
T Consensus 171 v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~ 250 (437)
T PRK05613 171 VLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYF 250 (437)
T ss_pred ccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCC
Confidence 9999999999999999999999999988899999999999999999999999999999986422
Q ss_pred -------------------HH-HHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeC
Q 012321 376 -------------------LV-TQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY 435 (466)
Q Consensus 376 -------------------li-~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~ 435 (466)
++ +....+...+|..++|++||+++|||+||..||+++++|+.+|+++|++||+|++|+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y 330 (437)
T PRK05613 251 VTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF 330 (437)
T ss_pred CCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence 01 1122456678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHhhc-CCcceEEEEEece
Q 012321 436 PGLKSHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 436 PgL~s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
|||++||+|+++++|| .|+||||||+|++
T Consensus 331 Pgl~~~p~~~~~~~~~~~g~gg~~sf~l~~ 360 (437)
T PRK05613 331 AGLKDSPWYATKEKLGLKYTGSVLSFDIKG 360 (437)
T ss_pred CCCCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 9999999999999997 7899999999975
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=463.41 Aligned_cols=309 Identities=35% Similarity=0.565 Sum_probs=279.7
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.++|+.++||++|++++|.+.+++++
T Consensus 3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~s 80 (425)
T PRK06084 3 LETLAIHAGYSPD--PTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVA 80 (425)
T ss_pred cchhheeCCcCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEeh
Confidence 5789999996432 23578999999999999999988888776555679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
|||+|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|.+
T Consensus 81 sG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~-tklV~lesp~NPtG~v 159 (425)
T PRK06084 81 SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDER-TKAVFCESIGNPAGNI 159 (425)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccC-CcEEEEeCCCCCCCee
Confidence 999999999999999999999999999998887777677789999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHH----------------
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 376 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el---------------- 376 (466)
.|+++|.++|+++|+++|+|++|+.+..++++.+|+|++++|+||+++||++++||+++.++..
T Consensus 160 ~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~ 239 (425)
T PRK06084 160 IDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPD 239 (425)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999864321
Q ss_pred -----------------HHH-HHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 377 -----------------VTQ-IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 377 -----------------i~~-l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
... .......+|..+++++||+++++|+||..|++++++|+.+++++|++||.|++|+||++
T Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l 319 (425)
T PRK06084 240 PSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGL 319 (425)
T ss_pred cccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 001 11224567899999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHhhcCC-cceEEEEEece
Q 012321 439 KSHPEHHIATQQMTG-FGGVVSFEVCV 464 (466)
Q Consensus 439 ~s~p~~~l~~~~~~g-~Ggl~sfel~~ 464 (466)
++||+|+++++||.| +||||||+|++
T Consensus 320 ~~~p~~~~~~~~~~g~~gg~~s~~~~~ 346 (425)
T PRK06084 320 PDHPEHELARRYMGGKPASILSFGIKG 346 (425)
T ss_pred CCcccHHHHHHhCCCCcceEEEEEecC
Confidence 999999999999987 89999999975
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=459.03 Aligned_cols=294 Identities=36% Similarity=0.628 Sum_probs=268.8
Q ss_pred CCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC
Q 012321 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA 248 (466)
Q Consensus 169 ~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~p 248 (466)
.+++++||||+|+||.|++.+++.+.+.+...+|.|+|++||+++.||++|++++|++.+++++|||+|+..++.+++++
T Consensus 6 ~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~ 85 (397)
T PRK05939 6 EHGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRA 85 (397)
T ss_pred CCCCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCC
Confidence 45789999999999999999888887766666799999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCE
Q 012321 249 GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI 328 (466)
Q Consensus 249 GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gil 328 (466)
||+||++++.|+++..++.. ++..|+++.+++..|+++++++++++ |++|++|+|+||+|.+.|+++|+++||++|++
T Consensus 86 Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e~l~~~l~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi~ 163 (397)
T PRK05939 86 GDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAAIRPN-TRMVFVETIANPGTQVADLAGIGALCRERGLL 163 (397)
T ss_pred CCEEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHHHHHHhCCCC-CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCE
Confidence 99999999999998776644 56789999999999999999999874 99999999999999999999999999999999
Q ss_pred EEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChH--------H-------------HHHHH-HHHHH
Q 012321 329 VCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------L-------------VTQIR-NLHHV 386 (466)
Q Consensus 329 lIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e--------l-------------i~~l~-~~~~~ 386 (466)
+|+|++|+.+..+++..+|+|++++|+||+++|||+++||+++.+.. + +.+++ .....
T Consensus 164 livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (397)
T PRK05939 164 YVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRD 243 (397)
T ss_pred EEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHh
Confidence 99999999888888999999999999999999999999998875321 1 12222 23446
Q ss_pred hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 387 ~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+|..++|+++|+++||++||..||+++++|+.+|++||++||+|++|+||+|++||+|+++++||.|+||||||+|++
T Consensus 244 ~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~ 321 (397)
T PRK05939 244 MGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD 321 (397)
T ss_pred cCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=457.35 Aligned_cols=309 Identities=37% Similarity=0.589 Sum_probs=287.3
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.+.||+++++++|++.+++++
T Consensus 10 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~ 87 (403)
T PRK07503 10 FSTRAIHHGYDPL--DHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALA 87 (403)
T ss_pred ccchheeCCCCCC--CCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEc
Confidence 6799999996542 23689999999999999999999888887666689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+.+++.+++++||+||++.+.|+.++.++...+...|+++.++|..|+++++++++++ |++|++|+|+||+|.+
T Consensus 88 sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklV~le~p~NPtG~~ 166 (403)
T PRK07503 88 SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDK-TRMVYFETPANPNMRL 166 (403)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCcc-CcEEEEeCCCCCCCee
Confidence 999999999999999999999999999988877776778889999999998999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH--HHHHhCCC
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGA 390 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~--~~~~~G~~ 390 (466)
.|+++|.++|+++|+++|+|++|+.++..+++.+|+|++++|+||+++||+++++|+++++++++++++. .+...|..
T Consensus 167 ~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~ 246 (403)
T PRK07503 167 VDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAV 246 (403)
T ss_pred eCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCC
Confidence 9999999999999999999999998888888888999999999999999999999999999999998874 35567889
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++|+++..|++++++|++.++++|++||.|++|+||++++||+|+++++||.|+||||||++++
T Consensus 247 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 247 MSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred CCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=454.08 Aligned_cols=302 Identities=33% Similarity=0.585 Sum_probs=277.7
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
.++|+++|.|...+ ..+++++|||+++++|.|++.. +..+|.|+||+||+.+.|+++|++++|.++++++
T Consensus 3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~ 72 (382)
T TIGR02080 3 KQATIAVRSGLNSD--TQYGCVVPPIYLSTTYNFTGFN--------EPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVT 72 (382)
T ss_pred CcccceeecCCCCC--CCCCCccCCeeCCceeEeCCcC--------ccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence 47899999996542 2358999999999999987632 1236899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++||.+++.+++++||+|+++.++|++++..+...+...++++.+++..|+++++++++++ ||+|++|+|+||||.
T Consensus 73 ~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~-tklV~l~~p~NPtG~ 151 (382)
T TIGR02080 73 NTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQK-PKLVLIETPSNPLLR 151 (382)
T ss_pred cCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCCE
Confidence 9999999999999999999999999999998887766666678899888888999999999875 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++++|++|+.+..+.++..|+|++++|+|||++|++++++|++++ +++++++++.++..+|..
T Consensus 152 ~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~ 231 (382)
T TIGR02080 152 VVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVT 231 (382)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999888888888899999999999999999999999876 578889999888888999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++++|++++++++|..|++++++|+..+++||++||.|++|+||+|++||+|+++++||.|+||||||+|++
T Consensus 232 ~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 232 GGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred CCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=459.40 Aligned_cols=310 Identities=34% Similarity=0.586 Sum_probs=280.5
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|++++||+++|+++|++.++++
T Consensus 8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~~av~~ 85 (433)
T PRK08134 8 GFDTLALHAGAAPD--PATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGVGAIAT 85 (433)
T ss_pred CcchhheeCCCCCC--CCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCCcEEEe
Confidence 37799999996532 3367999999999999999999888777656668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+.+++.+++++||+||++...|+++..++...+++.|++++++|..|+++++++|+++ |++|++++|+||+|.
T Consensus 86 sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~-TklV~~e~~~np~g~ 164 (433)
T PRK08134 86 ASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPN-TRLLFGETLGNPGLE 164 (433)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCcccCc
Confidence 9999999999999999999999999999998888776677889999999988999999999885 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChH----------------
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------- 375 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e---------------- 375 (466)
+.|+++|+++||++|+++|+|+++++++.++|+++|+|++++|.|||++||++++||+++....
T Consensus 165 v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~ 244 (433)
T PRK08134 165 VLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPY 244 (433)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999998874210
Q ss_pred ----------------HHHHH-HHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 376 ----------------LVTQI-RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 376 ----------------li~~l-~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
+..+. ......+|..+++++||+++++|+|++.|++++++|+.+++++|++||.|++|+||++
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l 324 (433)
T PRK08134 245 AGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPEL 324 (433)
T ss_pred ccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 00111 1233567889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHhhc-CCcceEEEEEece
Q 012321 439 KSHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 439 ~s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
++||+|+++++|| .|+||||||+|++
T Consensus 325 ~~~p~~~~~~~~~~~g~gg~~s~~l~~ 351 (433)
T PRK08134 325 ESHPDHALAKRLLPRGAGSVFSFDLKG 351 (433)
T ss_pred CCCccHHHHHHhCCCCCceEEEEEecC
Confidence 9999999999999 7899999999975
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=454.46 Aligned_cols=311 Identities=23% Similarity=0.427 Sum_probs=288.6
Q ss_pred CCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 151 ~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
.+++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|++||++++||+++++++|.+.+++
T Consensus 8 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~ 85 (394)
T PRK07050 8 RALQTRIVQPDDQIP--PGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALL 85 (394)
T ss_pred CCccchheECCCCCC--CCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 467899999996542 236899999999999999999888776655556899999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++||++|+.+++.+++++||+||++++.|+.+..++...+..+|+++.+++..+.++++++++++ ||+|++|+|+||+|
T Consensus 86 ~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~-tklV~le~p~Np~~ 164 (394)
T PRK07050 86 QPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPN-TRLIWLEAPGSVTM 164 (394)
T ss_pred eccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCc
Confidence 99999999999999999999999999999998877766677889999999877888999999875 99999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG 389 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~ 389 (466)
.+.|+++|+++|+++|+++|+|++|+.+..++++.+|+|++++|+||+++||+++++|++++ +++++++++.++..+|.
T Consensus 165 ~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~ 244 (394)
T PRK07050 165 EVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGI 244 (394)
T ss_pred cHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998997776 67888999988888899
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++++++|+++++++++..|++++++|+.+|+++|++||.|.+|+||+|++||+|.++++||.++||||+|++++
T Consensus 245 ~~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~ 319 (394)
T PRK07050 245 GVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDE 319 (394)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=458.80 Aligned_cols=310 Identities=31% Similarity=0.527 Sum_probs=280.5
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhc----------ccCCCccCCCCchhHHHHHHHHHhh
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK----------RRASFEYGRYGNPTTVVVEEKMSAL 222 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~----------~~~~~~Y~R~~~p~~~~Lee~lA~l 222 (466)
+.|.++|.|.... ..+++++||||+++||.|++.+++.+.+.. ...+|.|+||+||+...||++||++
T Consensus 18 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~l 95 (427)
T PRK07049 18 PETQMLNYGYDPE--LSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY 95 (427)
T ss_pred cccceeeCCCCCC--CCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHHH
Confidence 6789999996432 235899999999999999999887765532 1346999999999999999999999
Q ss_pred hCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE-EEEeCCCCHHHHHHhcc----CCCc
Q 012321 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPADMEGLEAALN----NNNV 297 (466)
Q Consensus 223 ~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~-v~~vd~~D~e~Le~ai~----~~~t 297 (466)
+|.+++++++||++||.+++.+++++||+|++++|.|+++..++...++.+|++ +.+.+..|.+++++++. ..++
T Consensus 96 eg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~t 175 (427)
T PRK07049 96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRV 175 (427)
T ss_pred hCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999888776667788997 55556677888887664 2359
Q ss_pred eEEEEeCCCCCCcccccHHHHHHHHHh------cCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEE
Q 012321 298 SLFFTESPTNPFLRCVDVKLVSDLCHK------KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS 371 (466)
Q Consensus 298 klV~lesPsNPtG~v~dl~~I~ela~~------~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vv 371 (466)
++||+|+|+||||.+.|+++|.+++++ +++++|+||+|.+++.+.|+..|+|++++|+||+++|++++++|+++
T Consensus 176 klv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv 255 (427)
T PRK07049 176 SLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVL 255 (427)
T ss_pred eEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEE
Confidence 999999999999999999999999988 79999999999988888888889999999999999999999999999
Q ss_pred eChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC--CCCcchHHHHh
Q 012321 372 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL--KSHPEHHIATQ 449 (466)
Q Consensus 372 g~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL--~s~p~~~l~~~ 449 (466)
++++++++++..+..+|..++++.+|+++++++++..|++++++|++.++++|++||+|++|+|||+ ++||+|+++++
T Consensus 256 ~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~ 335 (427)
T PRK07049 256 GRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKR 335 (427)
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHh
Confidence 9999999999998889999999999999999999999999999999999999999999999999986 99999999999
Q ss_pred hcCCcceEEEEEece
Q 012321 450 QMTGFGGVVSFEVCV 464 (466)
Q Consensus 450 ~~~g~Ggl~sfel~~ 464 (466)
||.|+||||||+|++
T Consensus 336 ~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 336 QCTGAGSTFSFDIKG 350 (427)
T ss_pred hCCCCccEEEEEEcC
Confidence 999999999999985
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=452.11 Aligned_cols=308 Identities=37% Similarity=0.637 Sum_probs=287.3
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|... ..++++.+|||+++||.+++.++....+.+...+|.|+|+++|+.++||+++++++|.+++++++
T Consensus 7 ~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~s 83 (390)
T PRK08133 7 FDTLAVRAGQLR---SPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATA 83 (390)
T ss_pred cchhheeCCCCC---CCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence 679999999643 23678999999999999999987776665555678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+..++.+++++||+||++++.|++++..+...+...|+++.+++..|+++++++++++ |++|++|+|+||+|.+
T Consensus 84 sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklV~ie~p~NptG~v 162 (390)
T PRK08133 84 SGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPN-TKLFFLETPSNPLTEL 162 (390)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCCc
Confidence 999999999999999999999999999999888877778889999999998999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCch
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN 392 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls 392 (466)
.|+++|.++||++|+++|+|++|+.+..+.|+..|+|++++|+||+++|+++++||++++++++++++.......|..++
T Consensus 163 ~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~ 242 (390)
T PRK08133 163 ADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLS 242 (390)
T ss_pred CCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999998888898899999999999999999999999999999988888888888899999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 393 ~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++.+|+++++++++..|++++++|+..++++|+++|.|++|+||+|++||+|+++++||.|+||||||+|+|
T Consensus 243 ~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 243 PFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=452.93 Aligned_cols=308 Identities=36% Similarity=0.583 Sum_probs=284.0
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|... ..++++.+|||.+++|.|++.++..+.+.+...+|.|+||++|+...||+++++++|.+.+++++
T Consensus 11 ~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~~ 87 (398)
T PRK07504 11 PATRLVHSGTLR---SQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARATA 87 (398)
T ss_pred cccceeeCCCCC---CCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEec
Confidence 679999999632 23578899999999999999887776666556689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
+|++|+..++.+++++||+|+++++.|+++...+...++..|+++.+++..|+++++++++++ ||+|++|+|+||+|.+
T Consensus 88 sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~-tklV~lesp~NptG~v 166 (398)
T PRK07504 88 SGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPN-TKVFFLESPTNPTLEV 166 (398)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCcEe
Confidence 999999988888899999999999999998877766677889999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~~G~~l 391 (466)
.|+++|.++|+++|+++|+|++|+.++.+.+..+|+|++++|+||+++|||+.+||+++++++++. +++......|..+
T Consensus 167 ~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~ 246 (398)
T PRK07504 167 IDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSL 246 (398)
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999888888889999999999999999999999999999888775 5666677889999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++.+|+++++|+++..|++++++|+++++++|++||.|.+|+||||++||+|+++++||+|+||||||+|++
T Consensus 247 s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 247 SPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred CHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=449.31 Aligned_cols=300 Identities=37% Similarity=0.668 Sum_probs=276.7
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..+++++||||+|+||.|++.. ...+|.|+|+++|++..||+++++++|.+.+++++
T Consensus 3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~ 72 (380)
T PRK06176 3 MQTKLIHGGISED--TTTGAVSVPIYQTSTYRQDAIG--------RPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFA 72 (380)
T ss_pred ccceeeECCCCCC--CCCCCccCCcccCCceecCCCC--------CcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEEC
Confidence 5788999996542 2367999999999999998731 23579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
|||+|+.+++ .++++||+|+++++.|++++..+...+...|++++++|..|+++++++++++ |++|++|+|+||+|.+
T Consensus 73 SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~-t~lV~lesP~Nptg~~ 150 (380)
T PRK06176 73 SGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPN-TKALYLETPSNPLLKI 150 (380)
T ss_pred CHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcC-ceEEEEECCCCCCcee
Confidence 9999998665 6789999999999999999888877788899999999999999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~l 391 (466)
.|+++|.++||++|+++|+|++|+.++..+|+.+|+|++++|++|+++||+++++|+++++ +++.++++.++...|..+
T Consensus 151 ~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~ 230 (380)
T PRK06176 151 TDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVL 230 (380)
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999888889999999999999999999999999998875 577788888888889999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++++|+++++++++..||+++++|+.+++++|++||.|.+|+||+|++||+|+++++||+|+||||||+|++
T Consensus 231 ~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 303 (380)
T PRK06176 231 GPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN 303 (380)
T ss_pred CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=447.86 Aligned_cols=307 Identities=38% Similarity=0.650 Sum_probs=285.5
Q ss_pred cccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 012321 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS 233 (466)
Q Consensus 154 ~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~S 233 (466)
.|+++|.|... ..++++++|||+++||.|++.++..+.+.+...+|.|+|+++|+..+||+++++++|.+.+++++|
T Consensus 1 ~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~s 77 (380)
T TIGR01325 1 ATLAIRGGKER---TEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATAT 77 (380)
T ss_pred CceeEECCCCC---CCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence 37789998632 236789999999999999998877766655556799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc
Q 012321 234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV 313 (466)
Q Consensus 234 G~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~ 313 (466)
|++|+.+++.+++++||+||++.+.|++++..+...++.+|+++.+++..|+++++++++++ +++|++|+|+||+|.+.
T Consensus 78 G~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~-tklV~le~p~np~g~~~ 156 (380)
T TIGR01325 78 GMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPN-TKLVFVETPSNPLGELV 156 (380)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCeee
Confidence 99999999999999999999999999998888877788899999999988999999999874 99999999999999999
Q ss_pred cHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchH
Q 012321 314 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393 (466)
Q Consensus 314 dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~ 393 (466)
|+++|.++||++|+++|+|++|+.++.++++.+|+|++++|+||+++||++++||+++++++++++++......|..+++
T Consensus 157 dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p 236 (380)
T TIGR01325 157 DIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSP 236 (380)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCH
Confidence 99999999999999999999999888888999999999999999999999999999999999999998888888999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 394 ~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+.+|+++++++++..|++++++++++++++|++||.|++|+||++++||+|+++++||+|+||||||+|++
T Consensus 237 ~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~ 307 (380)
T TIGR01325 237 FNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVAD 307 (380)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=448.85 Aligned_cols=303 Identities=35% Similarity=0.563 Sum_probs=273.5
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
.+|.++|.|... ..+++++||||+++||.+++.+. +.+...+|.|+|++||++++||+++++++|.+++++++
T Consensus 3 ~~t~~~~~~~~~---~~~~~~~~pi~~~st~~~~~~~~----~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~ 75 (385)
T PRK08574 3 RGTDAVRGYRGS---DPYGSLQPPIYLTALFRQEGEAY----PSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFN 75 (385)
T ss_pred ccceeeecCCCC---CCCCCccCCccCCcceecCcchh----hcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeC
Confidence 568899987442 23689999999999999887532 22334579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+..++.+++++||+|+++.+.|+++...+... ...|+++.+++. |++++++++++.++++|++|+|+||+|.+
T Consensus 76 sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v 153 (385)
T PRK08574 76 SGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKV 153 (385)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEe
Confidence 9999999999999999999999999999988777553 677999887764 68999999987349999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEE-eChHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vv-g~~eli~~l~~~~~~~G~~l 391 (466)
.|+++|+++||++|+++|+|++|+.++..+++.+|+|++++|+||+++||+|++||+++ .+++++++++.++..+|..+
T Consensus 154 ~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~ 233 (385)
T PRK08574 154 IDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM 233 (385)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999888899999999999999999999999899555 46788899988888889999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcC--CcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT--GFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~--g~Ggl~sfel~~ 464 (466)
+++.+|+++++++++..|++++++|+.+++++|+++|.|++|+||||++||+|+++++||+ |+||||||+|++
T Consensus 234 ~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~ 308 (385)
T PRK08574 234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG 308 (385)
T ss_pred CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 799999999975
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=447.85 Aligned_cols=302 Identities=36% Similarity=0.593 Sum_probs=277.9
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ ..+++++|||+++++|.|++.. ...+|.|+|+++|+.+.|+++|++++|.++++++
T Consensus 12 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~ 81 (405)
T PRK08776 12 SAATAAVRAGIDRD--TAYGAVTPPIVLSSNFSFDGFG--------NKRQYDYTRSGNPTRDLLGEALAELEGGAGGVIT 81 (405)
T ss_pred CccchheeCCCCCC--CCCCCccCCEeccceEEeCCCC--------cccCCcccCCCChHHHHHHHHHHHHhCCCceEEE
Confidence 47899999996542 3468999999999999998732 2236899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+.+++.+++++||+|+++.+.|+++..++...++..|+++..++..|+++|++++++ +|++|++|+|+||+|.
T Consensus 82 ~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~ 160 (405)
T PRK08776 82 ATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLR 160 (405)
T ss_pred cCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCc
Confidence 999999999999999999999999999999887777777778999999998899999999987 4999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|+.+..+.|+.+|+|++++|+||+++||+++++|++++ ++++.++++..+...|..
T Consensus 161 v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~ 240 (405)
T PRK08776 161 ITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT 240 (405)
T ss_pred cCCHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999888788888999999999999999999998998877 577888888878888888
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++++|++++++++++.|++++++|+..++++|+++|.|.+|+||++++||+|+++++||.|+||||||+|+|
T Consensus 241 ~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 241 GSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=442.70 Aligned_cols=300 Identities=38% Similarity=0.687 Sum_probs=275.4
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|+|...+ ..+++++||||+++||.+++.. ...+|.|+|+++|+...||+++++++|.+.+++++
T Consensus 3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~ 72 (377)
T PRK07671 3 AKTKLIHGGIIGD--PSTGAVSVPIYQVSTYKQEAVG--------KHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFG 72 (377)
T ss_pred cccceeeCCCCCC--CCCCCccCCccCCcceecCCCC--------CcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeC
Confidence 5799999996542 2357899999999999988742 23469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
|||+|+..++ .++++||+||++++.|++++..+...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.+
T Consensus 73 sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tklV~le~P~NPtg~~ 150 (377)
T PRK07671 73 SGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPN-TKAIYVETPTNPLLKI 150 (377)
T ss_pred CHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCcc
Confidence 9999887665 6789999999999999988877777778889999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~l 391 (466)
.|+++|.++|+++|+++|+|++|+.++..+++.+|+|++++|+||+++||+++++|+++. +++++++++.++...|..+
T Consensus 151 ~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~ 230 (377)
T PRK07671 151 TDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGIL 230 (377)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999888888899999999999999999999988998776 5678899999898889999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++.+|+++++++++..|++++++|++.|+++|+++|+|.+|+||+|++||+|+++++||.|+||||||++++
T Consensus 231 ~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 303 (377)
T PRK07671 231 GPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGS 303 (377)
T ss_pred CHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999953
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=443.46 Aligned_cols=302 Identities=39% Similarity=0.656 Sum_probs=277.8
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|.++|.|...+ ..+++++||||+++||.+++.+. ...+|.|+|+++|+...||++|++++|.+.+++++
T Consensus 13 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~-------~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~ 83 (388)
T PRK07811 13 FATRAIHAGYEPD--PATGAVNPPIYASSTFAQDGVGG-------LRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFS 83 (388)
T ss_pred cccceeeCCCCCC--CCCCCccCCccCCcceecCCccc-------ccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeC
Confidence 6799999996542 33688999999999999887532 12468999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+.+++.+++++||+||++++.|++++..+...++.+|+++.+++..|+++|+++++++ ||+|++|+|+||+|.+
T Consensus 84 sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~-tklV~ie~p~NPtg~~ 162 (388)
T PRK07811 84 SGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLSI 162 (388)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcC-CeEEEEECCCCCccee
Confidence 999999999999999999999999999998887777777889999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~l 391 (466)
.|+++|.++|+++|+++|+|++|+.+....++..|+|++++|++|+++||+++++|+++++ +++.++++..+...|..+
T Consensus 163 ~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~ 242 (388)
T PRK07811 163 TDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVP 242 (388)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999888888889999999999999999999889988875 677788887777778889
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++++|+++++|+++..|++++++|++.++++|++||.|++|+||+|++||+|+++++||.|+||||||+|++
T Consensus 243 s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 243 GPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=444.32 Aligned_cols=309 Identities=36% Similarity=0.621 Sum_probs=285.2
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|.++|.|...+ ..++++++|||.+++|.+++.+++.+.+.....+|.|+||++|+...||++|++++|.+++++++
T Consensus 9 ~~t~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~ 86 (400)
T PRK06234 9 FATKAIHGGHIGD--KQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVVAA 86 (400)
T ss_pred ccchheECCCCCC--CCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEEc
Confidence 5799999996532 23688999999999999999887777665545678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+..++.+++++||+|+++.+.|+.++..+...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.+
T Consensus 87 sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~-tklI~iesP~NPtG~v 165 (400)
T PRK06234 87 SGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKAN-TKVVYLETPANPTLKV 165 (400)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccC-CeEEEEECCCCCCCCc
Confidence 999999999999999999999999999998888777778899999999999999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhc--CCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH--HHHhC
Q 012321 313 VDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLG 388 (466)
Q Consensus 313 ~dl~~I~ela~~~--gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~--~~~~G 388 (466)
.|+++|.++|+++ |+++|+|++|+.++...++.+|+|++++|+||+++|++++++|+++++++++++++.. +..+|
T Consensus 166 ~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g 245 (400)
T PRK06234 166 TDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTG 245 (400)
T ss_pred CCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcC
Confidence 9999999999997 9999999999998888888889999999999999999999999999999998888753 44678
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++++.+|++++++++++.|++++++|+++++++|++||.|.+|+||+|++||+|+++++||+|+||||||++++
T Consensus 246 ~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~ 321 (400)
T PRK06234 246 SVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG 321 (400)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=447.45 Aligned_cols=310 Identities=31% Similarity=0.486 Sum_probs=278.9
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ ..+++++||||+++||.|++.+++.+.+.....+|.|+|.++|+...||++|++++|.+.++++
T Consensus 7 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~ 84 (427)
T PRK05994 7 GFATLAVHAGAQPD--PTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAV 84 (427)
T ss_pred CcchhheECCcCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEE
Confidence 47799999995432 2357899999999999999998777766544456899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+.+++.+++++||+||++.+.|+++...+...+...|+++.++|..|+++++++++++ |++|++|+|+||+|.
T Consensus 85 ~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~-tklV~vesp~NptG~ 163 (427)
T PRK05994 85 ASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPR-TKAIFIESIANPGGT 163 (427)
T ss_pred cCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCe
Confidence 9999999999999999999999999999998877777777889999999998999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh-----------------
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------------- 374 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~----------------- 374 (466)
+.|+++|.++|+++|+++|+|+++++++.++++++|+|++++|+||+++||++.+||+++...
T Consensus 164 v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~ 243 (427)
T PRK05994 164 VTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPR 243 (427)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999988522
Q ss_pred -H-----HHHH----------HHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 375 -K-----LVTQ----------IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 375 -e-----li~~----------l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
+ +.+. ........|..+++++||+++++|++|+.|++++++|+..++++|++||+|++|+||++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l 323 (427)
T PRK05994 244 PEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGL 323 (427)
T ss_pred chhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 1 1111 11234567899999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHhhc-CCcceEEEEEece
Q 012321 439 KSHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 439 ~s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
++||+|+++++|+ +|+||||||+|+|
T Consensus 324 ~~~~~~~~~~~~~~~g~g~~~sf~l~~ 350 (427)
T PRK05994 324 PDDPYHALAQKYSPKGAGAVFTFGLKG 350 (427)
T ss_pred CCCccHHHHHHhcCCCceEEEEEEecC
Confidence 9999999999997 8999999999985
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=449.03 Aligned_cols=299 Identities=33% Similarity=0.601 Sum_probs=271.9
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ .+++++||||+++||.+++.. ....|.|+|.++|++++||+++++++|.+.+++++
T Consensus 87 ~~t~~~~~~~~~~---~~~~~~~Pi~~sst~~~~~~~--------~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~ 155 (464)
T PLN02509 87 VSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFT 155 (464)
T ss_pred cchHheeCCCCCC---CCCCccCCccccceecCcccc--------ccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 7899999995532 357899999999999987731 22469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+.+++ .++++||+||++++.|+++..++...+...|+++.+++..|+++++++++++ |++|++|+|+||+|.+
T Consensus 156 SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~-TklV~lesPsNPtG~i 233 (464)
T PLN02509 156 SGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQ-TKLVWLESPTNPRQQI 233 (464)
T ss_pred cHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcC-CeEEEEECCCCCCCCH
Confidence 9999986655 6789999999999999998887777777889999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~l 391 (466)
.|+++|+++|+++|+++|+|++++.++.++++.+|+|++++|++||++||+++++|+++++ +.+.++++.++...|..+
T Consensus 234 ~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l 313 (464)
T PLN02509 234 SDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL 313 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999988899999999999999999999999999999875 455667777777778889
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++||+++++|++|..|++++++++++++++|++||.|++|+||||++||+|+++++||+|+||||||++.+
T Consensus 314 ~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~ 386 (464)
T PLN02509 314 APFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS 386 (464)
T ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999943
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=443.61 Aligned_cols=309 Identities=38% Similarity=0.640 Sum_probs=277.3
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|.++|.|...+ ..+++++||||+++||.|++.+++.+.+.....+|.|+|+++|+.+.||++|++++|.+.+++++
T Consensus 2 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~ 79 (418)
T TIGR01326 2 FETLQLHAGQEPD--PTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVA 79 (418)
T ss_pred ccceeEECCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEc
Confidence 5789999996532 23578999999999999999988776665444568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
|||+|+..++.+++++||+||++++.|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|.+
T Consensus 80 sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~-t~~V~le~p~NPtg~v 158 (418)
T TIGR01326 80 SGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDEN-TKAVFAETIGNPAINV 158 (418)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCee
Confidence 999999999999999999999999999998888777778889999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHH----------------
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 376 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el---------------- 376 (466)
.|+++|.++|+++|+++|+|++|+.+....++..|+|++++|+||+++|+|+++||+++.++++
T Consensus 159 ~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~ 238 (418)
T TIGR01326 159 PDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS 238 (418)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCc
Confidence 9999999999999999999999998888888888999999999999999999988888854321
Q ss_pred ---------------HHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCC
Q 012321 377 ---------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440 (466)
Q Consensus 377 ---------------i~~l~-~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s 440 (466)
+.+.+ ......|..++|+++|+++++++|+..|++++.+|+..++++|.+||+|.+|+||||++
T Consensus 239 q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~ 318 (418)
T TIGR01326 239 YHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS 318 (418)
T ss_pred cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence 11111 34456788899999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHhhc-CCcceEEEEEece
Q 012321 441 HPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 441 ~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
||+|+++++|| .|+||||||+|++
T Consensus 319 ~~~~~~~~~~~~~g~g~~~s~~l~~ 343 (418)
T TIGR01326 319 HPHHALAKKYLPKGFGAVLSFEIKG 343 (418)
T ss_pred CccHHHHHHhccCCCcceEEEEecC
Confidence 99999999999 7999999999975
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=436.25 Aligned_cols=297 Identities=41% Similarity=0.695 Sum_probs=273.6
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|.++|.|.+ ..+++++||||+++||.|++. .+|.|+|.++|+.++||+++++++|.+.++++
T Consensus 2 ~~~t~~~~~~~~----~~~~~~~~pi~~~~~~~~~~~-----------~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~ 66 (376)
T PRK06460 2 KDATRTVREDID----EATGAITTPIYQTTAYHYPEG-----------EKYRYSREANPTVLELTKKIVELENAEMGVAF 66 (376)
T ss_pred CcceeeeecCCC----CCCCCccCCccCCcceeeCCC-----------CCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence 478999999952 235789999999999999863 26999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++|+..++.+++++||+|+++.+.|++++..+...++..|+++..++..+.+.+++.+++ ++++|++|+|+||+|.
T Consensus 67 ~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~-~tklV~l~sp~NPtG~ 145 (376)
T PRK06460 67 SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLLR 145 (376)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCc
Confidence 999999999999999999999999999999888887778888999998887666666666555 4999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l 391 (466)
+.|+++|.++|+++|+++|+|++|+.++...++..++|++++|+||+++|++|.++|+++++++++++++..+..+|..+
T Consensus 146 v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~ 225 (376)
T PRK06460 146 VVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSL 225 (376)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998877777778899999999999999998899999999999999998888889889
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++..+|++++++++++.|++++++|+++|+++|++||.|++|+||+|++||+|+++++||+|+||||||++++
T Consensus 226 ~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 226 DPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=434.79 Aligned_cols=293 Identities=48% Similarity=0.827 Sum_probs=278.1
Q ss_pred CCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCC
Q 012321 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG 250 (466)
Q Consensus 171 ~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD 250 (466)
++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.++||+++++++|.+++++++||++|+..++.+++++||
T Consensus 1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd 80 (369)
T cd00614 1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD 80 (369)
T ss_pred CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence 36899999999999999998888877767789999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEE
Q 012321 251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330 (466)
Q Consensus 251 ~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillI 330 (466)
+|+++.+.|++++..+...++..|+++.+++..|++++++++++ ++++|++|+|+||+|.+.|+++|+++||++|+++|
T Consensus 81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~li 159 (369)
T cd00614 81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLV 159 (369)
T ss_pred EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence 99999999999988877777788999999999899999999987 49999999999999999999999999999999999
Q ss_pred EeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHH
Q 012321 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409 (466)
Q Consensus 331 vD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R 409 (466)
+|++|+.++.++++.+|+|++++|+||+++||+++++|++++++ +++++++..+..+|..++++.+|+++++++++..|
T Consensus 160 vD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r 239 (369)
T cd00614 160 VDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR 239 (369)
T ss_pred EECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHH
Confidence 99999999888899999999999999999999999999999987 89999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++++|+++++++|+++|.|.+|+||+|++||+|+++++|+.|+||||||++++
T Consensus 240 ~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~ 294 (369)
T cd00614 240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG 294 (369)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999974
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=436.23 Aligned_cols=304 Identities=34% Similarity=0.559 Sum_probs=280.2
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+||++|+.++||+++++++|.++++++
T Consensus 5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~ 82 (386)
T PRK06767 5 HMETALIHHGYTSE--EHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAF 82 (386)
T ss_pred CcccceeeCCCCCC--CCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEE
Confidence 36799999996542 2357999999999999999998888888776678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+..++.+++++||+|+++.+.|+.++..+.......|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus 83 ~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~-tklV~lesp~NptG~ 161 (386)
T PRK06767 83 GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPN-TKLIFVETPINPTMK 161 (386)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcC-ceEEEEeCCCCCCce
Confidence 9999999999999999999999999999999888877777789999888888999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHH-HHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI-RNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l-~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|+.++.+.++..|+|++++|+||+++||+++++|++++++++++++ +..+..+|+.
T Consensus 162 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~ 241 (386)
T PRK06767 162 LIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGI 241 (386)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999988888888899999999999999999999899999999888775 4556668888
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++|+++..|++++++++++++++|+++|+|+.|+|| +|+++++||.++||||||++++
T Consensus 242 ~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~ 309 (386)
T PRK06767 242 MAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKG 309 (386)
T ss_pred CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcC
Confidence 9999999999999999999999999999999999999999999999 7899999999999999999975
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=434.54 Aligned_cols=302 Identities=36% Similarity=0.627 Sum_probs=271.6
Q ss_pred CCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 151 ~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
++++|.++|.|...+ ..+++++||||+++||.|++.++..........+|.|+|+++|++++||+++++++|++.+++
T Consensus 7 ~~~~t~~~~~~~~~~--~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~ 84 (384)
T PRK06434 7 NGFNTRAVQSGELRD--PRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALS 84 (384)
T ss_pred CCcccceeECCCCCC--CCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEE
Confidence 457899999986532 346899999999999999998766533322235799999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+||.+++.+++++||+||++...|++++.++...+..+|+++.++|..+.+.++ +++.++++|++|+|+||++
T Consensus 85 ~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~ 162 (384)
T PRK06434 85 FSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTL 162 (384)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCc
Confidence 99999999999999999999999999999999988878888899999999987656655 5554599999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG 389 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~ 389 (466)
.+.|+++|+++||+++ +++|+|+++++.++|+..|+|++++|.||+++||++++||++++ ++++.++++..+..+|.
T Consensus 163 ~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~ 240 (384)
T PRK06434 163 KVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGS 240 (384)
T ss_pred eeecHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCC
Confidence 9999999999999998 56799999999999999999999999999999999999999987 45677888877778899
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.+++++||+++++|++++.|++++++|+++++++|++||+|++|+||||+ ++++||+|+||||||+|++
T Consensus 241 ~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 241 NPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred CCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999999995 8999999999999999975
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=431.00 Aligned_cols=298 Identities=35% Similarity=0.566 Sum_probs=268.6
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
++.|+++|.|...+ ..+++++||||+++||.|++. .+..+|.|+||++|+..+|+++|++++ .++++++
T Consensus 3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~--------~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~ 71 (366)
T PRK07582 3 GDGTRSVHAGGPEA--VPGEPVLPGPVFAAPYHLSPG--------EPTGPDTYGRASNPTWRALEAALGELE-GAEALVF 71 (366)
T ss_pred CcccceeeCCCCCC--CCCCCccCCccccceEEccCc--------cccCCceeECCCCccHHHHHHHHHHHc-CCCEEEE
Confidence 47799999985432 235799999999999999853 123468899999999999999999999 7889999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+..++.+++++||+||++++.|+++..++...++.+|+++.+++..+... .+.+ ++++|++|+|+||+|.
T Consensus 72 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~-~t~lV~le~p~NPtg~ 147 (366)
T PRK07582 72 PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALA-GADLVLAETPSNPGLD 147 (366)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---Hhcc-CceEEEEECCCCCCCC
Confidence 99999999999999999999999999999988777666777899999998765432 2334 4999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|+++||++|+++++|++|+.+..+.++++|+|++++|+||+++||+++++|++++ +++++++++.++...|..
T Consensus 148 v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~ 227 (366)
T PRK07582 148 VCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAI 227 (366)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998887788888999999999999999999999999987 478889999888888999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|++++++++++.|++++++|++.++++|++||.|.+|+||||++||+|+++++||+|+||||||++++
T Consensus 228 ~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~ 301 (366)
T PRK07582 228 PGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD 301 (366)
T ss_pred CCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=429.48 Aligned_cols=299 Identities=34% Similarity=0.607 Sum_probs=273.4
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|... . .+++++||||+++||.+++.+ ...+|.|+|.++|++++||+++++++|.+++++++
T Consensus 1 ~~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~ 69 (378)
T TIGR01329 1 LSTLLVNTDNKN--D-PYDASSMPIYQTATFKQPLAI--------ENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFS 69 (378)
T ss_pred CCceeEeCCCCC--C-CCCCcCCCeecCcceecCCcc--------ccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence 368899999542 2 267899999999999988642 22469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
||++|+.+++. ++++||+||++++.|+++..++...++..|+++.+++..|++++++++++ +|++|++|+|+||+|.+
T Consensus 70 sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~-~tklv~le~psnptg~v 147 (378)
T TIGR01329 70 SGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGP-KTKLVLLESPTNPLQKI 147 (378)
T ss_pred CHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCee
Confidence 99999988765 88999999999999999887777777788999999999999999999987 49999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~l 391 (466)
.|+++|+++||++|+++|+|++++.+..+.++.+|+|++++|++|+++||+++++|+++++ +++.++++..+...|..+
T Consensus 148 ~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~ 227 (378)
T TIGR01329 148 VDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGL 227 (378)
T ss_pred ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999988899999999999999999999999889999875 566688888877789899
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++++|+++++++++..|++++++|+..++++|++||.|.+|+||+|++||+|+++++++.|+||||||++++
T Consensus 228 ~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~ 300 (378)
T TIGR01329 228 APFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS 300 (378)
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=434.25 Aligned_cols=307 Identities=31% Similarity=0.557 Sum_probs=276.5
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhccc----CCCccCCCCchhHHHHHHHHHhhhCCCc
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR----ASFEYGRYGNPTTVVVEEKMSALEGAES 227 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~----~~~~Y~R~~~p~~~~Lee~lA~l~g~e~ 227 (466)
.+.++++|+|...+ .+++++||||+|+||.|++.+++.+.+.+.. .+|.|+|++||++++||+++++++|.+.
T Consensus 17 ~~~~~~~~~~~~~~---~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~ 93 (418)
T PLN02242 17 DPAAALASARHEFG---EHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEA 93 (418)
T ss_pred ChHHHHhcCCCCCC---CCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCe
Confidence 36688999998753 2367899999999999999998888776542 3589999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcc-cCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCC
Q 012321 228 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 306 (466)
Q Consensus 228 ~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~-~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPs 306 (466)
+++++||++|+.+++.+++++||+|+++.+.|+++...+...+. ..|+++++++..|+++++++++++++++|++|+|+
T Consensus 94 ~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~ 173 (418)
T PLN02242 94 AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESIS 173 (418)
T ss_pred EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCC
Confidence 99999999999999999999999999999999988776655543 47999999998899999999986349999999999
Q ss_pred CCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-
Q 012321 307 NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH- 385 (466)
Q Consensus 307 NPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~- 385 (466)
||||.+.|+++|+++|+++|++||+|++|. ++..++..+|+|++++|+||+++|++++++|+++++++++++++..+.
T Consensus 174 NPtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~ 252 (418)
T PLN02242 174 NPTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHG 252 (418)
T ss_pred CCCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhh
Confidence 999999999999999999999999999996 555677888999999999999999999999999999999998887643
Q ss_pred ---HhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhc---CCcceEEE
Q 012321 386 ---VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM---TGFGGVVS 459 (466)
Q Consensus 386 ---~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~---~g~Ggl~s 459 (466)
..|..++++.||+++++++++..|++++++|+++++++|++++ .+|+||+|++||+|+++++|| .|+|||||
T Consensus 253 ~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~s 330 (418)
T PLN02242 253 ALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALLKSMANKGYGFGGLLC 330 (418)
T ss_pred hhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHHHHhcccCCCceeEEE
Confidence 4677889999999999999999999999999999999999996 389999999999999999999 59999999
Q ss_pred EEece
Q 012321 460 FEVCV 464 (466)
Q Consensus 460 fel~~ 464 (466)
|++++
T Consensus 331 f~l~~ 335 (418)
T PLN02242 331 LDMDT 335 (418)
T ss_pred EEECC
Confidence 99974
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=427.47 Aligned_cols=300 Identities=36% Similarity=0.614 Sum_probs=277.0
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|.|...+ ..++++++|||+++||.+++.++ ..+|.|+|.++|+.+.||+++++++|.+.+++++
T Consensus 7 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~ 76 (390)
T PRK08064 7 IDTLLLHNQYKHD--KQTGAVNVPIYHASTFHQFDFDT--------FGKYDYSRSGNPTREALEDIIAELEGGTKGFAFA 76 (390)
T ss_pred cccceeeCCCCCC--CCCCCccCCcccCcceecCcccc--------cCCCcccCCCChhHHHHHHHHHHHhCCCCeEEEC
Confidence 6799999996542 23689999999999999887542 2468999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
|||.|+.+++. ++++||+||++++.|++++..+...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.+
T Consensus 77 sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~-tklV~l~~p~NptG~~ 154 (390)
T PRK08064 77 SGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPN-TKLFYVETPSNPLLKV 154 (390)
T ss_pred CHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCcEe
Confidence 99999988886 789999999999999998887777778889999999988999999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCc
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL 391 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~l 391 (466)
.|+++|.++||++|+++|+|++|+.+....++++|+|++++|+||+++||+++++|+++.+ ++++++++.++..+|..+
T Consensus 155 ~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~ 234 (390)
T PRK08064 155 TDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVL 234 (390)
T ss_pred ccHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999887888889999999999999999999889988765 688999999998899999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++++|+++++++++..|++++++|+.+++++|+++|.|.+|+||+|++||+|+++++||+|+||||||++++
T Consensus 235 ~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (390)
T PRK08064 235 GVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS 307 (390)
T ss_pred CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=414.46 Aligned_cols=300 Identities=35% Similarity=0.575 Sum_probs=276.0
Q ss_pred ccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 012321 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG 234 (466)
Q Consensus 155 t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG 234 (466)
..++|++... ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|+++.||+++++++|.+.+++++||
T Consensus 11 ~~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG 87 (389)
T PRK05968 11 AALITAHDEG---NAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASG 87 (389)
T ss_pred hheeecCCCc---cCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCH
Confidence 3478887653 3478999999999999999999888887766677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc
Q 012321 235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314 (466)
Q Consensus 235 ~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d 314 (466)
|+|+.+++.+++++||+||++.+.|++++..+...+...|+++.++|..|++++++++ + ++++|++|+|+|+++.+.|
T Consensus 88 ~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~d 165 (389)
T PRK05968 88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-P-GAKLLYLESPTSWVFELQD 165 (389)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-c-cCCEEEEECCCCCCCcHHH
Confidence 9999999999999999999999999999888877778889999999998999999998 4 4899999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhCCCchH
Q 012321 315 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNP 393 (466)
Q Consensus 315 l~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G~~ls~ 393 (466)
+++|+++||++|+++|+|++|+.+...+++.+|+|++++|+||+++||+++++|+++++++++++++.... .+|..+++
T Consensus 166 l~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~ 245 (389)
T PRK05968 166 VAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSP 245 (389)
T ss_pred HHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCCh
Confidence 99999999999999999999999887888889999999999999999999889999999999988886554 57888999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 394 ~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+.+|+++++|+++..|++++++++++++++|+++|.|++|+||++++|| ++++.|+||||+|++++
T Consensus 246 ~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~-----~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 246 FEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHP-----PAGLSGTSGLFSFIFRE 311 (389)
T ss_pred HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCh-----HHhCCCCceEEEEEECC
Confidence 9999999999999999999999999999999999999999999999998 56788999999999973
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=410.95 Aligned_cols=283 Identities=34% Similarity=0.556 Sum_probs=254.1
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|.++|.|...+ ..+++++||||+|+||.|++. +...+|.|+|++||++.+||++|++++|.+.++++
T Consensus 6 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~--------~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~ 75 (364)
T PRK07269 6 HINTILAQAGIKSD--EATGALVTPLHFSTTYQHPEF--------GQSTGFDYTRTKNPTRAKLEETLAAIESADYALAT 75 (364)
T ss_pred CcccceeeCCCCCC--CCCCCccCCccCCcceecCCC--------CCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 46799999996542 235789999999999998873 22347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+.+++ .++++||+||++.+.|+++..++....+..++++.+. .|+++++++++++ ||+|++|+|+||+|.
T Consensus 76 ~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~-TklV~lesP~NPtg~ 151 (364)
T PRK07269 76 SSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEED-TDIVYIETPTNPLMV 151 (364)
T ss_pred CCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcC-ceEEEEECCCCCCCe
Confidence 99999999888 5679999999999999998877766555556665543 5899999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|+++||++|+++|+|+||++++.++|+..|+|++++|+||+++||+|+++|++++ +++++++++..+...|..
T Consensus 152 ~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~ 231 (364)
T PRK07269 152 EFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAV 231 (364)
T ss_pred eeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998889999999999999999999999999999887 467888888877788999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++++|+++++|++|+.|++++++|+++++++|++||.|.+|+||++ ||||||++++
T Consensus 232 ~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~----------------gg~~sf~~~~ 289 (364)
T PRK07269 232 LSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK----------------GGMISFKVAD 289 (364)
T ss_pred CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCc----------------CcEEEEEECC
Confidence 999999999999999999999999999999999999999999999973 8999999864
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-47 Score=389.45 Aligned_cols=285 Identities=34% Similarity=0.595 Sum_probs=259.4
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|.++|.|...+ ..+++++||||+|+||.+++.+ ...+|.|+|++||+.+.||++|++++|.+.++++
T Consensus 4 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~ 73 (366)
T PRK08247 4 TIETKLAQIGNRSD--ERTGTVNPPVYFSTAYRHEGIG--------ESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFAC 73 (366)
T ss_pred CcchhheeCCCCCC--CCCCCccCCcccCcccccCCCC--------CcCCccccCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence 47899999996542 2368999999999999988732 2347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+.+++ .++++||+||++++.|++++..+...++.+|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus 74 ~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklv~le~P~NP~~~ 151 (366)
T PRK08247 74 SSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPN-TKAIFIETPTNPLMQ 151 (366)
T ss_pred cCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccC-ceEEEEECCCCCCCc
Confidence 99999998765 6889999999999999999888877788899999999999999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|+++|+++|+++|+|++|+.++.+.|+..|+|++++|+||+++||+++++|+++++ ++++++++..+...|..
T Consensus 152 ~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~ 231 (366)
T PRK08247 152 ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAV 231 (366)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999988888888999999999999999999999999986 67888888888888888
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++++++..|++++++|++.++++|+++|+|..|+||+. |||++|++++
T Consensus 232 ~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~----------------gg~~sf~~~~ 289 (366)
T PRK08247 232 LSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGR----------------GGMLSFRLQD 289 (366)
T ss_pred CChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCc----------------CcEEEEEECC
Confidence 999999999999999999999999999999999999999999999973 8899998863
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=238.16 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCC---ccchHHHHHhhcccCCcEEEEeCC---C
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC---YRKTRIFIETVLPKMGITATVIDP---A 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~---y~~t~~~~~~~l~~~gi~v~~vd~---~ 283 (466)
+..+.+|+.+++++|++.+++++||++|+.+++ ..+.+||+||+++.. |++++.+ ...++..|+++.+++. .
T Consensus 122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l-~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~ 199 (454)
T TIGR00474 122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLAL-NTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRT 199 (454)
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHH-HHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCC
Confidence 457899999999999999999999999998888 457899999999877 5566555 3456778999998875 5
Q ss_pred CHHHHHHhccCCCceEEEEeCCCCCC--c--ccccHHHHHHHHHhcCCEEEEeCCCC------------CCCccchhccC
Q 012321 284 DMEGLEAALNNNNVSLFFTESPTNPF--L--RCVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLG 347 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~lesPsNPt--G--~v~dl~~I~ela~~~gillIvD~t~a------------~~~~~~pl~~g 347 (466)
++++++++++++ |++|++++++|++ | .+.|+++|+++||++|+++++|++.+ .+..+++.++|
T Consensus 200 ~l~dle~aI~~~-T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~G 278 (454)
T TIGR00474 200 HLKDYEDAITEN-TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAG 278 (454)
T ss_pred CHHHHHHhcCcC-CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcC
Confidence 789999999885 9999999999995 5 58899999999999999999999732 23345778899
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHH---------H-------HHHHHhCCCchHHHHHHHHHhhHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI---------R-------NLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l---------~-------~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e 411 (466)
+|++++|.+|+++|| .+|++++++++++++ + .+...+|..++++.+|+.++++++|..|++
T Consensus 279 aDiv~fSg~K~LgGp---~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~ 355 (454)
T TIGR00474 279 VDLVTFSGDKLLGGP---QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPE 355 (454)
T ss_pred CCEEEecCccccCCC---eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHH
Confidence 999999999999998 389999998887543 2 233456777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 012321 412 QQNSTALRMAKILEAH 427 (466)
Q Consensus 412 ~~~~na~~La~~L~~~ 427 (466)
++++++++++++|++.
T Consensus 356 ~~~~~A~~la~~L~~~ 371 (454)
T TIGR00474 356 ELRARAERLAKRLKAA 371 (454)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999875
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=229.37 Aligned_cols=213 Identities=23% Similarity=0.321 Sum_probs=172.3
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCc---cchHHHHHhhcccCCcEEEEeCC---C
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY---RKTRIFIETVLPKMGITATVIDP---A 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y---~~t~~~~~~~l~~~gi~v~~vd~---~ 283 (466)
+..+.+|+.+++++|++++++++||++|+.+++.+ +.+||+||+++..| ++++.+ ...++..|+++.+++. .
T Consensus 127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i-~~~~~~~G~~l~~v~~~~~t 204 (464)
T PRK04311 127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-LAAGKEVIVSRGELVEIGGAFRI-PDVMRQAGARLVEVGTTNRT 204 (464)
T ss_pred hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-hCCCCEEEEcchhhhhcCcchhh-HHHHHHCCcEEEEECCCCCC
Confidence 45679999999999999999999999999888854 68999999998644 334443 3445678999888874 4
Q ss_pred CHHHHHHhccCCCceEEEEeCCCCCC----cccccHHHHHHHHHhcCCEEEEeCC---------C---CCCCccchhccC
Q 012321 284 DMEGLEAALNNNNVSLFFTESPTNPF----LRCVDVKLVSDLCHKKGAIVCIDGT---------F---ATPLNQKALSLG 347 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~lesPsNPt----G~v~dl~~I~ela~~~gillIvD~t---------~---a~~~~~~pl~~g 347 (466)
++++++++|+++ |++|++++++|++ +...|+++|+++||++|+++++|+. | ..+..++++++|
T Consensus 205 ~~~dle~aI~~~-TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~G 283 (464)
T PRK04311 205 HLRDYEQAINEN-TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAG 283 (464)
T ss_pred CHHHHHHhcCcc-CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcC
Confidence 789999999875 9999999999983 4678999999999999999999994 3 234446778899
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHH--HHHHh---CCCchH-----------HHHHHHHHhhHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVL---GGALNP-----------NAAYLIIRGMKTLHLRVQ 411 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~--~~~~~---G~~ls~-----------~~A~l~lrgL~tl~~R~e 411 (466)
+|++++|.+|+++||. +|++++++++++++++ +.+.+ +.++.+ ..+|..++++++|..|++
T Consensus 284 aDiv~fSg~K~LgGp~---~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~ 360 (464)
T PRK04311 284 VDLVTFSGDKLLGGPQ---AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPE 360 (464)
T ss_pred CcEEEecCcccccCCc---eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHH
Confidence 9999999999999994 8999999999988773 11111 333344 444555667788999999
Q ss_pred HHHHHHHHHHHHHHcCC
Q 012321 412 QQNSTALRMAKILEAHP 428 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p 428 (466)
++++++++++++|++++
T Consensus 361 ~~~~~A~~la~~L~~~~ 377 (464)
T PRK04311 361 ELRARAERLAAALKAAL 377 (464)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999986
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=216.57 Aligned_cols=251 Identities=13% Similarity=0.180 Sum_probs=188.9
Q ss_pred CccccCCCccCChHHHHHHHhccc---C-CCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCE
Q 012321 176 PVVNTSAYFFKKTAELIDFKEKRR---A-SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH 251 (466)
Q Consensus 176 Pi~~sst~~~~~~~~~~~~~~~~~---~-~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~ 251 (466)
||.+.+.....-.+.+.++..... . .|.+.+...|..+++|+.+|+++|.++++++++|++++.+++.+++++||+
T Consensus 25 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~ 104 (387)
T PRK09331 25 PIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDY 104 (387)
T ss_pred hhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCE
Confidence 555555554444445555443211 1 445666678899999999999999999998888889999999999999999
Q ss_pred EEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCC------CceEEEEeCCCCCCcccccHHHH
Q 012321 252 IVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNN------NVSLFFTESPTNPFLRCVDVKLV 318 (466)
Q Consensus 252 VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~~------~tklV~lesPsNPtG~v~dl~~I 318 (466)
|+++.+.|.+.+.. +...|+++.+++. .|++++++++++. ++++|++++|+|++|.+.|+++|
T Consensus 105 Vlv~~~~h~s~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I 180 (387)
T PRK09331 105 VVLDGLAHYTSYVA----AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKV 180 (387)
T ss_pred EEECCCchHHHHHH----HHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHH
Confidence 99999999886643 3456888877754 4789999988631 48999999999999999999999
Q ss_pred HHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--------HhCC
Q 012321 319 SDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGG 389 (466)
Q Consensus 319 ~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--------~~G~ 389 (466)
.++||++|+++++|++++.+. ......+|+|+++.|++|++++++ .+|+++++++++++++.... .+|.
T Consensus 181 ~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~--~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 258 (387)
T PRK09331 181 AKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASA--PSGVLATTEEYADKVFRTSRKFGVKEVELLGC 258 (387)
T ss_pred HHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCC--CEEEEEECHHHHhhcccccCCCcccceeeece
Confidence 999999999999999998764 344556789999999999998765 47899999998887765432 1333
Q ss_pred CchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 390 ALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 390 ~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
++.+..++.+ +..+.....+++++.++++++.+.|+++++++.
T Consensus 259 ~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~ 304 (387)
T PRK09331 259 TLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQ 304 (387)
T ss_pred ecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3322222222 222333334567778899999999999977643
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=213.42 Aligned_cols=220 Identities=20% Similarity=0.276 Sum_probs=162.9
Q ss_pred hHHHHHHHHHhhhCC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 211 TTVVVEEKMSALEGA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~----e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.++++.+++.+.+|. ++.+++++| ++|+..++++++.+||+||+++|.|......+ ...|.++..++.
T Consensus 70 LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~----~~~gg~~v~v~l~~~ 145 (393)
T COG0436 70 LREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAV----KLAGGKPVPVPLDEE 145 (393)
T ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHH----HhcCCEEEEEeCCcC
Confidence 344455555555552 343555555 59999999999999999999999999866443 334555555442
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhccC--
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSLG-- 347 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~~g-- 347 (466)
.|+++|++++++ +||+|++++||||||.+++ +++|+++|++||+++|.||+|...... ..+...
T Consensus 146 ~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~ 224 (393)
T COG0436 146 ENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA 224 (393)
T ss_pred ccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC
Confidence 369999999998 5999999999999999986 788999999999999999998654332 122221
Q ss_pred --CcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCchHHHHHH---HHHhh---HHHHHHHHHHHHHHH
Q 012321 348 --ADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYL---IIRGM---KTLHLRVQQQNSTAL 418 (466)
Q Consensus 348 --aDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ls~~~A~l---~lrgL---~tl~~R~e~~~~na~ 418 (466)
.-|+++|+||.++.+|++ .||++++ +++++.+.+++.....+.+....+. ++.+- +.+....+...++++
T Consensus 225 ~~~~i~i~s~SK~~~mtGwR-vG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd 303 (393)
T COG0436 225 RDRTITINSFSKTYGMTGWR-IGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRD 303 (393)
T ss_pred cceEEEEecccccccccccc-eeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 248999999999999975 7899988 8888888877776665555444443 34433 234444467889999
Q ss_pred HHHHHHHcCCCcEEEeCC
Q 012321 419 RMAKILEAHPKVKRVHYP 436 (466)
Q Consensus 419 ~La~~L~~~p~V~~V~~P 436 (466)
.+.+.|.+.+.+..+..|
T Consensus 304 ~l~~~l~~~~g~~~~~~p 321 (393)
T COG0436 304 LLVEALNEIGGLSVVKPP 321 (393)
T ss_pred HHHHHHHhcCCeeeccCC
Confidence 999999999877665545
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=211.10 Aligned_cols=223 Identities=13% Similarity=0.224 Sum_probs=171.0
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-- 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-- 281 (466)
.....+|...++++++++++|.++++++++|++++..++.+++++||+|+++.+.|.+.+.. +...|+++..++
T Consensus 38 ~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~ 113 (361)
T cd06452 38 LDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVA----AERAGLNVREVPNT 113 (361)
T ss_pred cccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHH----HHhcCCEEEEEecC
Confidence 34445789999999999999998777777777999999999999999999999988876532 455677777764
Q ss_pred -----CCCHHHHHHhccC------CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCc
Q 012321 282 -----PADMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGAD 349 (466)
Q Consensus 282 -----~~D~e~Le~ai~~------~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaD 349 (466)
..|++++++++++ .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.. .....+|+|
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d 193 (361)
T cd06452 114 GHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGAD 193 (361)
T ss_pred CCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCC
Confidence 2478999988862 2489999999999999999999999999999999999999986543 455567899
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHHHH--------hCCCchHHHHHHHHHhhHHHH---HHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTAL 418 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--------~G~~ls~~~A~l~lrgL~tl~---~R~e~~~~na~ 418 (466)
+++.|+||++++++ .+|++++++++++++++.+.. .+.+.....++.++..++.+. .++++..++++
T Consensus 194 ~~~~s~~K~l~~~~--~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 271 (361)
T cd06452 194 FIVGSGHKSMAASA--PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKAR 271 (361)
T ss_pred EEEecCCccccCCC--CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998765 578999999999888665432 122222222333333443332 33445556778
Q ss_pred HHHHHHHcCCCcEE
Q 012321 419 RMAKILEAHPKVKR 432 (466)
Q Consensus 419 ~La~~L~~~p~V~~ 432 (466)
++.+.|+++|+++.
T Consensus 272 ~l~~~L~~l~g~~v 285 (361)
T cd06452 272 WFVAELEKIEGIKQ 285 (361)
T ss_pred HHHHHHhcCCCeEE
Confidence 99999999987643
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=209.25 Aligned_cols=212 Identities=16% Similarity=0.175 Sum_probs=165.0
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
|+|.. +..+||+++|+++|.+++++++||+.|+..++.+++++||+|+++++.|+++...+ .+. +.++.+++..
T Consensus 39 yg~~~--~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~--~l~--~~~~~~~~~~ 112 (392)
T PLN03227 39 YGTID--AHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGV--SLS--RANVRWFRHN 112 (392)
T ss_pred cCChH--HHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH--HHc--CCeEEEeCCC
Confidence 66654 79999999999999999999999999988999999999999999999999876543 122 3466666666
Q ss_pred CHHHHHH---hccC----------CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------
Q 012321 284 DMEGLEA---ALNN----------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--------- 341 (466)
Q Consensus 284 D~e~Le~---ai~~----------~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~--------- 341 (466)
|.+++++ .+.+ .++++|++|+|.|++|.+.|+++|.++|+++|+++|+||+++.+...
T Consensus 113 d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~ 192 (392)
T PLN03227 113 DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEH 192 (392)
T ss_pred CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHH
Confidence 6555544 4421 24899999999999999999999999999999999999998754332
Q ss_pred ---chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH--HHHhCCCchHHHHHHHHHhhHH---HHHHHHHH
Q 012321 342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGALNPNAAYLIIRGMKT---LHLRVQQQ 413 (466)
Q Consensus 342 ---~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~--~~~~G~~ls~~~A~l~lrgL~t---l~~R~e~~ 413 (466)
.| ..++|+++.|++|+++. ++|++++++++++.++.. ...+++.++|..++.++..++. .+.++++.
T Consensus 193 ~g~~p-~~~~Div~~slsk~~g~----~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l 267 (392)
T PLN03227 193 AGLKP-MVHAEIVTFSLENAFGS----VGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRL 267 (392)
T ss_pred cCCCC-CCCceEEEeechhhhhc----cCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 12 23679999999999874 468889999888776543 2345666677766665544433 34677888
Q ss_pred HHHHHHHHHHHHc
Q 012321 414 NSTALRMAKILEA 426 (466)
Q Consensus 414 ~~na~~La~~L~~ 426 (466)
.++.+++.+.|++
T Consensus 268 ~~~~~~l~~~L~~ 280 (392)
T PLN03227 268 HDSIANLYSTLTN 280 (392)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999974
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=205.49 Aligned_cols=217 Identities=17% Similarity=0.249 Sum_probs=159.9
Q ss_pred CchhHHHHHHHHHhhhCC---C-cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 208 GNPTTVVVEEKMSALEGA---E-STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~---e-~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
..+.++.+.+++++.+|. + +.|++++| ++++..++.+++++||+|++++|+|+.....+ +..|.++..++
T Consensus 80 ~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~----~~~g~~v~~v~~ 155 (405)
T PRK06207 80 DADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQL 155 (405)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEec
Confidence 345566777777777774 2 45555555 59999999999999999999999998865433 34555554443
Q ss_pred ---------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-
Q 012321 282 ---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL- 344 (466)
Q Consensus 282 ---------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl- 344 (466)
..|+++|+++++++ +++|++++|+||||.+++ +++|+++|+++|+++|+||+|....+. .++
T Consensus 156 ~~~~~~~~~~~d~~~l~~~~~~~-~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~ 234 (405)
T PRK06207 156 DYLSADKRAGLDLDQLEEAFKAG-VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLR 234 (405)
T ss_pred cccCcccCCCcCHHHHHHhhhhc-CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchh
Confidence 23789999998774 899999999999999996 678889999999999999998764321 111
Q ss_pred cc----CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012321 345 SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST 416 (466)
Q Consensus 345 ~~----gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~n 416 (466)
.+ ..-+++.|+||.++.+| .+.||++++++++++++..........+.+....+...+ ..+..+++++.++
T Consensus 235 ~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 313 (405)
T PRK06207 235 ALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAI 313 (405)
T ss_pred cCCCCcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 11 22389999999999776 468999999999999988776655444443333333222 3466777888888
Q ss_pred HHHHHHHHHcCCCc
Q 012321 417 ALRMAKILEAHPKV 430 (466)
Q Consensus 417 a~~La~~L~~~p~V 430 (466)
++.+.+.|++++.+
T Consensus 314 r~~l~~~L~~~~~~ 327 (405)
T PRK06207 314 RDDLLRVLRGVEGV 327 (405)
T ss_pred HHHHHHHHhcCCCc
Confidence 88899999887654
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=201.60 Aligned_cols=224 Identities=16% Similarity=0.197 Sum_probs=162.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
+.|+.. .....|++.++++++. ++.++++++++|+.+++.+++.+||+|+++.|.|..... .++..|.++.
T Consensus 56 ~~Y~~~--~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~g~~v~ 129 (373)
T PRK07324 56 LTYGWI--EGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYD----IPESLGAEVD 129 (373)
T ss_pred ccCCCC--CCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEE
Confidence 445532 2345899999998753 445555555699999999999999999999999987543 3445677776
Q ss_pred EeCC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----hh
Q 012321 279 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL 344 (466)
Q Consensus 279 ~vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----pl 344 (466)
.++. .|++++++.+++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|....... ..
T Consensus 130 ~v~~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~ 208 (373)
T PRK07324 130 YWQLKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA 208 (373)
T ss_pred EEecccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence 6642 378999998877 4999999999999999998 8899999999999999999986532211 11
Q ss_pred cc-CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHH
Q 012321 345 SL-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR 419 (466)
Q Consensus 345 ~~-gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t----l~~R~e~~~~na~~ 419 (466)
.. ...|++.|+||.++.+|. +.||+++++++++++++.+.....+.+.+..+++...++. +....+...++.+.
T Consensus 209 ~~~~~~I~~~s~SK~~~~~G~-RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~ 287 (373)
T PRK07324 209 DLYEKGISTNSMSKTYSLPGI-RVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAI 287 (373)
T ss_pred hccCCEEEEecchhhcCCccc-eeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 11 234889999999998774 5799999999999998877654444444444444444432 23333445667888
Q ss_pred HHHHHHcCCCcEEE
Q 012321 420 MAKILEAHPKVKRV 433 (466)
Q Consensus 420 La~~L~~~p~V~~V 433 (466)
+.++|++++.+..+
T Consensus 288 l~~~l~~~~~~~~~ 301 (373)
T PRK07324 288 LDEWVAKEPRVSYV 301 (373)
T ss_pred HHHHHhcCCCceEE
Confidence 89999988766543
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=203.18 Aligned_cols=217 Identities=17% Similarity=0.188 Sum_probs=164.6
Q ss_pred CchhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 208 GNPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
..+.++.+++.+++..|. ++.+++++|+ +++..++.+++.+||+|++++|+|...... ++..|+++..++.
T Consensus 67 ~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~ 142 (389)
T PRK05957 67 IPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMA----ITMAGCQPILVPT 142 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHH----HHhcCCEEEEeec
Confidence 346688889999888874 4556666665 899888888999999999999999875432 3456777776642
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhc----
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS---- 345 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~---- 345 (466)
.|+++++++++++ +++|++.+|+||||.+++ +++|+++|+++|+++|+|++|...... .+..
T Consensus 143 ~~~~~~d~~~l~~~i~~~-~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 221 (389)
T PRK05957 143 DDNYQLQPEAIEQAITPK-TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGS 221 (389)
T ss_pred CCCCCcCHHHHHHhcCcC-ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCc
Confidence 4789999999874 999999999999999997 888999999999999999998643321 1111
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~La 421 (466)
....|++.|+||.++.+|. +.||+++++++++++.......+.+.+......+...+ ..+...++++.++++.+.
T Consensus 222 ~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~ 300 (389)
T PRK05957 222 GNHTISLYSLSKAYGFASW-RIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILL 300 (389)
T ss_pred cCcEEEEecchhhccCccc-eeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 1234889999999988874 58999999999999988776555554544444443333 235556667788888899
Q ss_pred HHHHcCCCc
Q 012321 422 KILEAHPKV 430 (466)
Q Consensus 422 ~~L~~~p~V 430 (466)
+.|++++.+
T Consensus 301 ~~L~~~~~~ 309 (389)
T PRK05957 301 KSLGQLQDR 309 (389)
T ss_pred HHHHhcCCC
Confidence 999887653
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=200.38 Aligned_cols=221 Identities=15% Similarity=0.250 Sum_probs=165.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++....|++.++++++. ++.+++++|+ +++..++.+++++||+|++++|.|..... .++..|.++..++
T Consensus 53 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~ 128 (351)
T PRK14807 53 VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSV----YSKIAGAVEIPVK 128 (351)
T ss_pred ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH----HHHHcCCeEEEee
Confidence 4556666778999999999986 4566777776 88999999999999999999999986432 3344566665554
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch---h-ccCCcEEE
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L-SLGADLVL 352 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p---l-~~gaDivv 352 (466)
..|++++++++++.++++|++++|+||||.+.+.+++.+++++++.++|+|++|........ + .....+++
T Consensus 129 ~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~ 208 (351)
T PRK14807 129 LKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVL 208 (351)
T ss_pred cCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEE
Confidence 24789999999754599999999999999999999999999998889999999865321111 1 12345999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL--~tl~~R~e~~~~na~~La~~L~~~p~V 430 (466)
.|+||.++.+| ++.||+++++++++.++..+... ..+.+..+.+...+ ..+..+++...++++.+.+.|++.+++
T Consensus 209 ~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~ 285 (351)
T PRK14807 209 RTLSKAFGLAG-LRVGYAVANENILKYLNLVKSPY--NINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGI 285 (351)
T ss_pred ecchHhcccch-hceeeeecCHHHHHHHHHccCCC--CcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999998777 46799999999999887655432 23444444333333 245556667777888899999877765
Q ss_pred E
Q 012321 431 K 431 (466)
Q Consensus 431 ~ 431 (466)
.
T Consensus 286 ~ 286 (351)
T PRK14807 286 K 286 (351)
T ss_pred E
Confidence 3
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=200.62 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----- 283 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~----- 283 (466)
+|....+++.+|+++|.+.++++++|++++..++.+++++||+|+++.+.|.+.+. .++..|+++..++..
T Consensus 50 ~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~----~~~~~g~~~~~~~~~~~~~~ 125 (370)
T TIGR02539 50 KPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYV----AAERAGLNVKEVPHTGHPEY 125 (370)
T ss_pred chHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHH----HHHHcCCEEEEEecCCcccC
Confidence 45788889999999999999999999999999999999999999999999877653 245568887777643
Q ss_pred --CHHHHHHhccC------CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 284 --DMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 284 --D~e~Le~ai~~------~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
|+++|++++++ .++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+.. ......+.|+++.|
T Consensus 126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s 205 (370)
T TIGR02539 126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGS 205 (370)
T ss_pred CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEee
Confidence 89999998863 2489999999999999999999999999999999999999987642 34445678999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHHHhC--------CCc---hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--------GAL---NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G--------~~l---s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~ 423 (466)
++|++++++ ..|++++++++++.++.....+. ... ....++.++..+...-.++.+..++++++.+.
T Consensus 206 ~sK~~~~~g--~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~ 283 (370)
T TIGR02539 206 GHKSMAASG--PCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAE 283 (370)
T ss_pred CcccccCCC--CEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998755 36899999999998876554221 111 12222222222112112334445667789999
Q ss_pred HHcCC
Q 012321 424 LEAHP 428 (466)
Q Consensus 424 L~~~p 428 (466)
|++.+
T Consensus 284 L~~~g 288 (370)
T TIGR02539 284 LEDIG 288 (370)
T ss_pred HHhCC
Confidence 98875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=204.10 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=180.0
Q ss_pred ccCCCCchhHHHHHHHHHhhhC-C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 203 EYGRYGNPTTVVVEEKMSALEG-A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g-~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.+.||+++...+|++++++++| . .+.|+.++|+ +.|..++++++.+||.|++..|+|.... ..++..|+++..
T Consensus 50 ~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~ 125 (356)
T COG0079 50 KLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVK 125 (356)
T ss_pred hhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEE
Confidence 5889999999999999999999 4 4788888888 8999999999999999999999998744 334556877777
Q ss_pred eCC----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCccchhc----cCCc
Q 012321 280 IDP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALS----LGAD 349 (466)
Q Consensus 280 vd~----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~~~pl~----~gaD 349 (466)
++. .|++.+.+++++ ++++||++|||||||...+.++|.+++... +.+||+||+|..+....... ...-
T Consensus 126 v~~~~~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nl 204 (356)
T COG0079 126 VPLKEFRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNL 204 (356)
T ss_pred ecccccccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCE
Confidence 764 678999999987 499999999999999999888888877653 88999999987655422222 2224
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN-AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~-~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
+|+.|+||.||-.| ++.|++++++++++.+++.+..+..+.... .+..+++.-+.+..+.++..+.++++.+.|++++
T Consensus 205 ivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 205 IVLRTFSKAFGLAG-LRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG 283 (356)
T ss_pred EEEEecHHhhhcch-hceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999888 568999999999999999998776443332 3333344446778888899999999999999987
Q ss_pred CcEEE
Q 012321 429 KVKRV 433 (466)
Q Consensus 429 ~V~~V 433 (466)
+..|
T Consensus 284 -~~~v 287 (356)
T COG0079 284 -LFGV 287 (356)
T ss_pred -CCee
Confidence 4433
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=200.99 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=184.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~-aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
|..+.......++.|++++++.|++ +.|+++.|+ ++++++..++ +++||+||+++..|++....+..+.++.|+
T Consensus 58 ~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga 137 (405)
T COG0520 58 HTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGA 137 (405)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCc
Confidence 3344344456788899999999974 567666666 9999999988 699999999999999988777777778899
Q ss_pred EEEEeCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCc
Q 012321 276 TATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGAD 349 (466)
Q Consensus 276 ~v~~vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaD 349 (466)
++++++.. +.++++..++++ ||+|.+...+|.||.+.|+++|+++||++|++++||.+++.+.. .+.-++|+|
T Consensus 138 ~v~~i~~~~~g~~~~~~~~~~i~~~-Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~D 216 (405)
T COG0520 138 KVRVIPLDDDGLLDLDALEKLITPK-TKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCD 216 (405)
T ss_pred EEEEEecCCCCCcCHHHHHHhcCCC-ceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCC
Confidence 88887632 589999988875 99999999999999999999999999999999999999887754 455578999
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHHH----------------------HhCCCchHHHHHHHHHhhHHH-
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMKTL- 406 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~----------------------~~G~~ls~~~A~l~lrgL~tl- 406 (466)
++++|.|||+.||. ..|++++++++++.+.-... .-.++.+....+.+-..++.+
T Consensus 217 f~afsgHKwl~gP~--GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~ 294 (405)
T COG0520 217 FLAFSGHKWLLGPT--GIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL 294 (405)
T ss_pred EEEEcccccccCCC--ceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH
Confidence 99999999888885 36999999999888732110 001122222222222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEecee
Q 012321 407 ----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCVF 465 (466)
Q Consensus 407 ----~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~~ 465 (466)
....+..++..+++.+.|+++|.|+. +.|.. . ..+++++|.+++.
T Consensus 295 ~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i-~g~~~-~------------~r~~~vsF~v~~~ 343 (405)
T COG0520 295 EIGMEAIEAHERELTEYLLEGLSELPGVEI-YGPPD-A------------DRGGIVSFNVKGI 343 (405)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCCeEE-ecCCc-c------------cCceEEEEEeCCC
Confidence 22334456678888999999999854 44432 1 1468888888764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=195.42 Aligned_cols=213 Identities=21% Similarity=0.255 Sum_probs=167.5
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
..++..+.+++.+++++|.++.+++++|++++..++.+++++||+|+++++.|+..... +...|+++..++..|.+
T Consensus 43 ~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~ 118 (349)
T cd06454 43 GTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDG----IRLSGAKKRIFKHNDME 118 (349)
T ss_pred CCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHH----HHHcCCceEEecCCCHH
Confidence 35788999999999999998899999999999988888899999999999999875533 34468888777777888
Q ss_pred HHHHhccC----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------chhccCCcEEEe
Q 012321 287 GLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLH 353 (466)
Q Consensus 287 ~Le~ai~~----~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---------~pl~~gaDivv~ 353 (466)
++++.+++ .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+... .....+.|+++.
T Consensus 119 ~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 198 (349)
T cd06454 119 DLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMG 198 (349)
T ss_pred HHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEe
Confidence 88888864 34799999999999999999999999999999999999998643221 112357899999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
|++|++++. +|+++++++++++++..... .+...++.....+...++.+ ..+.++..++++.+.+.|+++
T Consensus 199 s~sK~~~~~----gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (349)
T cd06454 199 TLGKAFGAV----GGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL 273 (349)
T ss_pred echhhhccc----CCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999874 48888999888887654432 23345555444444444443 456677888888998988875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=200.57 Aligned_cols=218 Identities=13% Similarity=0.124 Sum_probs=156.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhh----CC---C-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcc
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALE----GA---E-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~----g~---e-~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~ 271 (466)
.|.|.. +....|++.|++++ |. + +.|++++|+ +++..++.+++++||+|++++|+|+..... +.
T Consensus 63 ~~~y~~---~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~----~~ 135 (399)
T PRK07681 63 SYGYTL---SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETG----IQ 135 (399)
T ss_pred cCCCCC---CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHH----HH
Confidence 355542 23445556655554 32 2 566666666 899999999999999999999999886533 44
Q ss_pred cCCcEEEEeCC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc
Q 012321 272 KMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ 341 (466)
Q Consensus 272 ~~gi~v~~vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~ 341 (466)
..|+++..++. .|++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 136 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~ 214 (399)
T PRK07681 136 MAGATSYYMPLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFD 214 (399)
T ss_pred hcCCEEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeC
Confidence 56777766542 268899888876 4999999999999999997 678888999999999999998753321
Q ss_pred c----h-hc----cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHH
Q 012321 342 K----A-LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHL 408 (466)
Q Consensus 342 ~----p-l~----~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~ 408 (466)
. + .. ....|++.|+||.++.+| .+.||++++++++++++..+...+...+....+.+...+ +.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 293 (399)
T PRK07681 215 GNKPISFLSVPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEK 293 (399)
T ss_pred CCCCCChhhCCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHH
Confidence 1 1 11 123588999999998777 468999999999999988776544444444333333322 34455
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 012321 409 RVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~ 427 (466)
+.+...++.+.+.+.|+++
T Consensus 294 ~~~~~~~~~~~l~~~L~~~ 312 (399)
T PRK07681 294 NRGIYQERRDTLVDGFRTF 312 (399)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 5566677888888999876
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=201.63 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=155.8
Q ss_pred hhHHHHHHHHHhhh----CC-----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 210 PTTVVVEEKMSALE----GA-----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~-----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.....|++.+++++ |. ++.|++++|+ +++..++.+++++||+|++++|.|+..... ++..|.++..
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~v~~ 156 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTH----TKYYGGEVYN 156 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHH----HHHcCCEEEE
Confidence 44566777777664 42 2368788887 899999999999999999999999886543 3446777666
Q ss_pred eCC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-c--hh--
Q 012321 280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K--AL-- 344 (466)
Q Consensus 280 vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-~--pl-- 344 (466)
++. .|++++++++.+ ++++|++++|+||||.+++ +++|.++|+++|++||+||+|...... . +.
T Consensus 157 v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~ 235 (410)
T PRK06290 157 LPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLS 235 (410)
T ss_pred EecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhc
Confidence 542 278889888876 4999999999999999997 578888899999999999998754221 1 11
Q ss_pred ---ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHH
Q 012321 345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTAL 418 (466)
Q Consensus 345 ---~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~ 418 (466)
..+.+|++.|+||.++.+| .+.||+++++++++.+...+.....+.+......+ +...+.+....++..++++
T Consensus 236 ~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 314 (410)
T PRK06290 236 VPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLD 314 (410)
T ss_pred CCCccccEEEEeechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 1235699999999998777 46899999999999988776655444332222222 3332345555666778888
Q ss_pred HHHHHHHcC
Q 012321 419 RMAKILEAH 427 (466)
Q Consensus 419 ~La~~L~~~ 427 (466)
.+.+.|+++
T Consensus 315 ~l~~~L~~~ 323 (410)
T PRK06290 315 KLVKILNEV 323 (410)
T ss_pred HHHHHHHhC
Confidence 899999876
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=192.09 Aligned_cols=220 Identities=20% Similarity=0.279 Sum_probs=165.7
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~-pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.+|...+||+.+++++|.+..+++++|++++..++.+++. +||+|++++++|...+... ..+...|+++..++.
T Consensus 38 ~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 116 (353)
T PLN02721 38 YDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDG 116 (353)
T ss_pred CCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCC
Confidence 4677899999999999998899999999888778877777 9999999999986544210 123456787776652
Q ss_pred -CCHHHHHHhccC------CCceEEEEeCC-CCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCC------ccchhc
Q 012321 283 -ADMEGLEAALNN------NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL------NQKALS 345 (466)
Q Consensus 283 -~D~e~Le~ai~~------~~tklV~lesP-sNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~------~~~pl~ 345 (466)
.|++++++++++ .++++|+++++ +||+|.+.| +++|.++|+++|+++|+|+++.... ....+.
T Consensus 117 ~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~ 196 (353)
T PLN02721 117 TMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLV 196 (353)
T ss_pred CcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHh
Confidence 489999999972 24899999885 678999887 6899999999999999999864321 112223
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~--~~A~l~lrgL~tl~~R~e~~~~na~~La~~ 423 (466)
.++|.++.|+||+++++ +||++++++++++.+...+...+..+.. ..+...+.+++....++++..++++.+.+.
T Consensus 197 ~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 273 (353)
T PLN02721 197 KAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEG 273 (353)
T ss_pred hhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999975 3566788999998887776655544322 233344456666555677777888899999
Q ss_pred HHcCCCcE
Q 012321 424 LEAHPKVK 431 (466)
Q Consensus 424 L~~~p~V~ 431 (466)
|++++++.
T Consensus 274 L~~~~~~~ 281 (353)
T PLN02721 274 LNQIKGLR 281 (353)
T ss_pred HHhCCCcE
Confidence 99887764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=196.96 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=164.3
Q ss_pred CccCCC-C-chhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC
Q 012321 202 FEYGRY-G-NPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 202 ~~Y~R~-~-~p~~~~Lee~lA~l~g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
..|+|. | -+.++.|.+++++++|. ++.|++|.|. ++|..++++++.+||+|++.+|.|.+....+ ...|
T Consensus 63 ~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~----~maG 138 (420)
T KOG0257|consen 63 NQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQV----VMAG 138 (420)
T ss_pred ccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHH----hhcC
Confidence 345543 4 35688999999998874 5667777777 9999999999999999999999998865443 2234
Q ss_pred cEEEEeC-------------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012321 275 ITATVID-------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP 338 (466)
Q Consensus 275 i~v~~vd-------------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~ 338 (466)
.+..++. ..|.++++.+++++ ||+|++++||||||.+.. +++|+++|++||+++|.||+|...
T Consensus 139 ~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k-Tk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~ 217 (420)
T KOG0257|consen 139 GTPVFVPLKPKEGNVSSSDWTLDPEELESKITEK-TKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWL 217 (420)
T ss_pred CcceeeccccccccccCccccCChHHHHhhccCC-ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHH
Confidence 3333332 24899999999985 999999999999999985 889999999999999999997543
Q ss_pred Ccc---------chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCC-chHH-HHHHH-H-Hh---
Q 012321 339 LNQ---------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA-LNPN-AAYLI-I-RG--- 402 (466)
Q Consensus 339 ~~~---------~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~-ls~~-~A~l~-l-rg--- 402 (466)
+.. .|..+...+-+.|++|+++..||. .||+++++.++..++.++...... ..++ .|-.. . .+
T Consensus 218 v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWr-lGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~ 296 (420)
T KOG0257|consen 218 VYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWR-LGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELAC 296 (420)
T ss_pred hhCCCcceeeecCCchhheEEEeccccceeeeeeee-eeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhc
Confidence 221 122333568999999999999985 689999888888888777655422 2222 11111 1 11
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 403 -----MKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 403 -----L~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
......+.+.++++++.|++.|.+.
T Consensus 297 ~~p~~~y~~~~~~~~y~~krdil~k~L~~l 326 (420)
T KOG0257|consen 297 LQPGGSYFITELVKEYKEKRDILAKALEEL 326 (420)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2444557788899999999999986
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=198.66 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHhhhCC--CcEEE-eCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 209 NPTTVVVEEKMSALEGA--ESTVI-MASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~--e~~v~-~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
....+.+++.+++++|. ++.|+ ++++++++.+++.++ +++||+||++++.|++.+..+....+..|++++.++
T Consensus 62 ~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~ 141 (401)
T PRK10874 62 TARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLP 141 (401)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence 44577889999999997 34455 455569999998887 479999999999999866555556677788888775
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecc
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA 355 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~ 355 (466)
. .|+++++++++++ |++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+...+++|+++.|+
T Consensus 142 ~~~~~~~d~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~ 220 (401)
T PRK10874 142 LGADRLPDVDLLPELITPR-TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSG 220 (401)
T ss_pred cCCCCcCCHHHHHHhcCcC-cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEec
Confidence 3 4789999999874 99999999999999999999999999999999999999864322 333356899999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHH--------------------Hh-CCCchHHHHHHHHHhhHHHH-----HH
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------------------VL-GGALNPNAAYLIIRGMKTLH-----LR 409 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--------------------~~-G~~ls~~~A~l~lrgL~tl~-----~R 409 (466)
+|+++.+| .|+++.++++++++..+.. .+ .++.+......+..+++.+. ..
T Consensus 221 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~ 297 (401)
T PRK10874 221 HKLYGPTG---IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQA 297 (401)
T ss_pred ccccCCCc---cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99877655 4899999988876542210 00 01222222222223333322 22
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEE
Q 012321 410 VQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~p~V~~ 432 (466)
.+++.+.++++.+.|+++|.++.
T Consensus 298 ~~~~~~l~~~l~~~l~~~~g~~~ 320 (401)
T PRK10874 298 ESWSRSLATLAEDALAKLPGFRS 320 (401)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEE
Confidence 34555678888889988887653
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=196.49 Aligned_cols=212 Identities=19% Similarity=0.165 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.+...+||+.+++++|.+++++++||++|+..++.+++++||+|+++++.|++....+ ..+. .+...+...|++++
T Consensus 82 ~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~-~~~~---~~~~~~~~~d~~~l 157 (393)
T TIGR01822 82 QDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGV-RLCK---AKRYRYANNDMADL 157 (393)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH-HhcC---CceEEeCCCCHHHH
Confidence 5778999999999999999999999999999999999999999999999999866544 2222 22233446788999
Q ss_pred HHhccC---C--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-------hh--ccCCcEEEec
Q 012321 289 EAALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------AL--SLGADLVLHS 354 (466)
Q Consensus 289 e~ai~~---~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~-------pl--~~gaDivv~S 354 (466)
++++++ . ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.... .. ..+.|+++.|
T Consensus 158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s 237 (393)
T TIGR01822 158 EAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT 237 (393)
T ss_pred HHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEE
Confidence 988864 1 48999999999999999999999999999999999999986543211 11 2257899999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcC
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~t---l~~R~e~~~~na~~La~~L~~~ 427 (466)
+||+++|. ++|++++++++++.++.... .++++..+.....++..++. .+.+.++..++++.+.+.|++.
T Consensus 238 ~sK~l~g~---r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 238 LGKALGGA---SGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred ChHHhhCC---CcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999864 47999999999988876432 23333344332223333333 3445566778888888888764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=195.42 Aligned_cols=220 Identities=18% Similarity=0.223 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhcc---CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~---pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
....++++.+++++|.+ +.++++++++++..++.++.. +||+|+++++.|++.+..+....+..|+++.+++.
T Consensus 43 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (373)
T cd06453 43 DAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence 44667889999999975 555666677999999999887 89999999999998665554555567888887753
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-chhccCCcEEEecccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATK 357 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-~pl~~gaDivv~S~sK 357 (466)
.|++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+... .....|+|+++.|++|
T Consensus 123 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 201 (373)
T cd06453 123 DDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHK 201 (373)
T ss_pred CCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccc
Confidence 389999999987 4999999999999999999999999999999999999998765442 2335689999999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHHHH--------------------h-CCCchHHH---HHHHHHhhH--HHHHHHH
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------L-GGALNPNA---AYLIIRGMK--TLHLRVQ 411 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~~~--------------------~-G~~ls~~~---A~l~lrgL~--tl~~R~e 411 (466)
++++++ +|+++++++++++++..... + .++.+... .+.++..++ .++.+.+
T Consensus 202 ~~~~~g---~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~ 278 (373)
T cd06453 202 MLGPTG---IGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAA 278 (373)
T ss_pred ccCCCC---cEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 999854 68999999888776543210 0 01121111 122222222 2344566
Q ss_pred HHHHHHHHHHHHHHcCCCcEEE
Q 012321 412 QQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~~V 433 (466)
++.+.++++.+.|+++|.++.+
T Consensus 279 ~~~~~~~~l~~~l~~~~~~~~~ 300 (373)
T cd06453 279 HEHELTAYALERLSEIPGVRVY 300 (373)
T ss_pred HHHHHHHHHHHHHhcCCCeEEe
Confidence 6778888899999998876544
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=192.18 Aligned_cols=218 Identities=22% Similarity=0.228 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A 283 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----~ 283 (466)
..+..+++++.+++++|.++.+++++|++++..++.+++++||+|+++++.|...+... ......|+++..++. .
T Consensus 30 ~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 108 (338)
T cd06502 30 EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKL 108 (338)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcC
Confidence 57889999999999999778889999999999999999999999999999987644211 112225777777754 5
Q ss_pred CHHHHHHhccC------CCceEEEEeCCCCCCcc--cccHHHHHHHHHhcCCEEEEeCCCCCC------CccchhccCCc
Q 012321 284 DMEGLEAALNN------NNVSLFFTESPTNPFLR--CVDVKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGAD 349 (466)
Q Consensus 284 D~e~Le~ai~~------~~tklV~lesPsNPtG~--v~dl~~I~ela~~~gillIvD~t~a~~------~~~~pl~~gaD 349 (466)
|+++|++++++ .++++|++++|+||.+. ..|+++|+++|+++|+++|+|++|..+ ........++|
T Consensus 109 d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d 188 (338)
T cd06502 109 TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVD 188 (338)
T ss_pred CHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCC
Confidence 79999999874 14899999999998442 346788999999999999999986321 11122335789
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCC--chHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~--ls~~~A~l~lrgL~t--l~~R~e~~~~na~~La~~L~ 425 (466)
+++.|+||++++++ |++++++++++++++.....++.. .++..++.++..|+. ...++++..++++++.+.|+
T Consensus 189 ~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~ 265 (338)
T cd06502 189 SVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALE 265 (338)
T ss_pred EEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 556778899999988776555432 344555555555554 45566788888999999998
Q ss_pred cCCC
Q 012321 426 AHPK 429 (466)
Q Consensus 426 ~~p~ 429 (466)
+++.
T Consensus 266 ~~~~ 269 (338)
T cd06502 266 ELGG 269 (338)
T ss_pred hcCC
Confidence 8653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=193.48 Aligned_cols=216 Identities=17% Similarity=0.190 Sum_probs=155.6
Q ss_pred chhHHHHHHHHHhhhC--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 209 NPTTVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g--~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
.+.++.+.+.+.+.+| . ++.+++++|++++..++.+++++||+|++++|+|..... .++..|+++..++.
T Consensus 64 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~ 139 (382)
T PRK06108 64 PELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVA----APKILGARVVCVPLDF 139 (382)
T ss_pred HHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHH----HHHHCCCEEEEeeCCC
Confidence 3455566666665556 2 445555556699999999999999999999999987553 34456777766542
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc------chhc--
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------KALS-- 345 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~------~pl~-- 345 (466)
.|++++++.+++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... ....
T Consensus 140 ~~~~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 218 (382)
T PRK06108 140 GGGGWTLDLDRLLAAITP-RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIA 218 (382)
T ss_pred CCCCccCCHHHHHHhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcC
Confidence 478999999876 4999999999999999885 678999999999999999997654321 0011
Q ss_pred --cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh----hHHHHHHHHHHHHHHHH
Q 012321 346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALR 419 (466)
Q Consensus 346 --~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg----L~tl~~R~e~~~~na~~ 419 (466)
....+++.|+||.++.+| .+.|++++++++++++...........+...+..+... .+.++...++..++.+.
T Consensus 219 ~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (382)
T PRK06108 219 EPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDH 297 (382)
T ss_pred CCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 124588999999998776 46799999999999888765443333444433333222 23345556667778888
Q ss_pred HHHHHHcCCCc
Q 012321 420 MAKILEAHPKV 430 (466)
Q Consensus 420 La~~L~~~p~V 430 (466)
+.+.|++++.+
T Consensus 298 l~~~L~~~~~~ 308 (382)
T PRK06108 298 LVDALRALPGV 308 (382)
T ss_pred HHHHHHhCCCC
Confidence 99999887654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=194.17 Aligned_cols=210 Identities=15% Similarity=0.200 Sum_probs=151.7
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. ++.+++++|+ +++..++..++++||+|++++|+|+..... ++..|+++..++.
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~G~~v~~v~~ 144 (383)
T TIGR03540 69 MLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIG----TLFAGGEPYEMPL 144 (383)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHH----HHhcCCEEEEEec
Confidence 345556655543 43 3356666665 999999999999999999999999985533 3446766665532
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----c--hhc
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K--ALS 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~--pl~ 345 (466)
.|++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... . .+.
T Consensus 145 ~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~ 223 (383)
T TIGR03540 145 KEENGFLPDFDAIPEDIAK-KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVD 223 (383)
T ss_pred CcccCCccCHHHHHhhccc-cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCC
Confidence 278899888876 4999999999999999998 688899999999999999998643211 1 111
Q ss_pred --cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh----hHHHHHHHHHHHHHHHH
Q 012321 346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALR 419 (466)
Q Consensus 346 --~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg----L~tl~~R~e~~~~na~~ 419 (466)
....+++.|+||.++.+| ++.||+++++++++++.......+...+......+... .+.++...+...++++.
T Consensus 224 ~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (383)
T TIGR03540 224 GAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDL 302 (383)
T ss_pred CcccCEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 123588899999998777 56899999999999988776655444333333332222 34455556667788888
Q ss_pred HHHHHHcC
Q 012321 420 MAKILEAH 427 (466)
Q Consensus 420 La~~L~~~ 427 (466)
+.+.|+++
T Consensus 303 ~~~~L~~~ 310 (383)
T TIGR03540 303 LLEALKKI 310 (383)
T ss_pred HHHHHHhC
Confidence 99999886
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=199.54 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=164.6
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
++||+++...+|++++++.+|. .+.|++++|+ +++..++.+++++| |+|+++.|+|+... ..++..|+++..+
T Consensus 51 ~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v 126 (351)
T PRK01688 51 LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTV 126 (351)
T ss_pred cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEe
Confidence 6778888889999999999996 4556666766 99999999999997 99999999998643 3344567777666
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCccc----hh-ccCC
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK----AL-SLGA 348 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~~----pl-~~ga 348 (466)
+. .|++++++++ + ++++|++++|+||||.+.+.++|.++++. .++++|+||+|....... .. ..+.
T Consensus 127 ~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n 204 (351)
T PRK01688 127 PTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH 204 (351)
T ss_pred ecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCC
Confidence 42 4789999888 3 48999999999999999987777776653 268999999987543211 11 1234
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc-hHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l-s~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~ 425 (466)
-+++.|+||.+|.+| ++.|++++++++++.+++.+..++... ....+..++. +.+.+..++++..++++++.+.|+
T Consensus 205 ~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~ 283 (351)
T PRK01688 205 LVILRTLSKAFALAG-LRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALK 283 (351)
T ss_pred EEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998776 457899999999999887655443221 1112222222 234566677778888999999999
Q ss_pred cCCCcEEE
Q 012321 426 AHPKVKRV 433 (466)
Q Consensus 426 ~~p~V~~V 433 (466)
+++.+..+
T Consensus 284 ~~~~~~~~ 291 (351)
T PRK01688 284 EIPCVEQV 291 (351)
T ss_pred hCCCCCeE
Confidence 88766444
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=192.95 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=154.2
Q ss_pred chhHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 209 NPTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~-----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
.+.++.+++++++++|. ++.+++++|++++..++.+++.+||+|++++|+|......+ +..|.++..++.
T Consensus 69 ~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 144 (384)
T PRK12414 69 AALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIV----RLQGATPVAIKLS 144 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHH----HHcCCEEEEEecC
Confidence 35567777777777775 24666666669999999999999999999999998755433 334665555432
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc----chhc-----
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS----- 345 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~----~pl~----- 345 (466)
.|+++|++++++ ++++|++++|+||||.++ ++++|+++|+++|+++|+|++|...... .++.
T Consensus 145 ~~~~~~d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 223 (384)
T PRK12414 145 PEDFRVNWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL 223 (384)
T ss_pred ccccccCHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc
Confidence 478999999976 499999999999999987 5788899999999999999998653221 1111
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~---tl~~R~e~~~~na~~La~ 422 (466)
.+..+++.|+||.++.+| .+.||+++++++++.+++.........+...++.+...++ ......+.++++++.+.+
T Consensus 224 ~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~ 302 (384)
T PRK12414 224 AERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLAR 302 (384)
T ss_pred cCcEEEEecccccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 123499999999998777 4689999999999998887654433333433333333332 222334556778888889
Q ss_pred HHHcC
Q 012321 423 ILEAH 427 (466)
Q Consensus 423 ~L~~~ 427 (466)
.|+++
T Consensus 303 ~L~~~ 307 (384)
T PRK12414 303 ELAGS 307 (384)
T ss_pred HHHhC
Confidence 99886
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=197.24 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=162.9
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+++....|++++++++|. ++.|++++|+ +++..++.+++++||+|++++|.|+... ..++..|+++..++.
T Consensus 81 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~ 156 (380)
T PLN03026 81 YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPR 156 (380)
T ss_pred ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeec
Confidence 456677788999999999986 4566777776 8999999899999999999999997533 233456777766642
Q ss_pred -----CCHHHHHHhc-cCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-ccCCcEE
Q 012321 283 -----ADMEGLEAAL-NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SLGADLV 351 (466)
Q Consensus 283 -----~D~e~Le~ai-~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~----~pl-~~gaDiv 351 (466)
.|+++|++++ ++ ++++|++++|+||||.+.+.+++.++++.. +++|+||+|...... ... .....++
T Consensus 157 ~~~~~~d~~~l~~~~~~~-~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv 234 (380)
T PLN03026 157 TPDFSLDVPRIVEAVETH-KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIV 234 (380)
T ss_pred CCCCCcCHHHHHHHHhcc-CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEE
Confidence 4789999988 44 599999999999999999999999999765 899999998643221 111 2234689
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
+.|+||.++.+| .+.||+++++++++.+++.+..++ ++......+...| +.+....++..++++.+.+.|++++
T Consensus 235 ~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~~~~~--~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 311 (380)
T PLN03026 235 LRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAKQPYN--VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVP 311 (380)
T ss_pred EecchHhhcCcc-ccceeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999998777 467999999999998887665433 3333333333333 4445555666778888999999876
Q ss_pred Cc
Q 012321 429 KV 430 (466)
Q Consensus 429 ~V 430 (466)
.+
T Consensus 312 ~~ 313 (380)
T PLN03026 312 FL 313 (380)
T ss_pred CC
Confidence 54
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=197.56 Aligned_cols=212 Identities=15% Similarity=0.175 Sum_probs=165.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
+.+...+||++|++++|.+.++++++|++|+..++.++..+||+|+++...|.+.... +...|+++..++..|+++
T Consensus 97 ~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~ 172 (407)
T PRK07179 97 DDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEG----VRAAGAQAHPFRHNDVDH 172 (407)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHH----HHHCCCeEEEecCCCHHH
Confidence 3468899999999999999999999999999999999999999999998888775433 234577777777789999
Q ss_pred HHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-------cchh--ccCCcEEEeccccc
Q 012321 288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--SLGADLVLHSATKF 358 (466)
Q Consensus 288 Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-------~~pl--~~gaDivv~S~sK~ 358 (466)
|+++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ...+ ..++|+++.|++|+
T Consensus 173 l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~ 252 (407)
T PRK07179 173 LRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKA 252 (407)
T ss_pred HHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHh
Confidence 99999763479999999999999999999999999999999999999865322 1111 12469999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+++. +|++++++++++.++.... .++++..+.....+ ++.++....+.++..++++++.+.|++.
T Consensus 253 ~g~~----~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~ 322 (407)
T PRK07179 253 FAGR----AGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL 322 (407)
T ss_pred hhcc----CeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 9863 6899999988887764432 23444444433322 3334444556788888999999999876
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=194.91 Aligned_cols=210 Identities=17% Similarity=0.199 Sum_probs=150.7
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++++++++ |. ++.+++++|+ +++..++..++++||+|++++|+|+..... ++..|+++..++.
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~----~~~~g~~~~~v~~ 146 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIG----TIFAGGEPYFMPL 146 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHH----HHHcCCEEEEEec
Confidence 345666666654 42 3346666665 999999999999999999999999875433 3345666655431
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch-hc--
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS-- 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p-l~-- 345 (466)
.|++++++.+.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .+ ..
T Consensus 147 ~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 225 (385)
T PRK09276 147 KEENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVP 225 (385)
T ss_pred CCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccC
Confidence 368888888876 4999999999999999997 578888899999999999998743221 11 11
Q ss_pred --cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012321 346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR 419 (466)
Q Consensus 346 --~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~ 419 (466)
.+..|++.|+||.++.+| .+.||+++++++++++++.+.......+...+..+...+ +.++...++..++++.
T Consensus 226 ~~~~~~i~~~S~SK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (385)
T PRK09276 226 GAKDVGIEFHSLSKTYNMTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDI 304 (385)
T ss_pred CCcCCEEEEecchhhcCCcc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 134588999999998887 457899999999999988766555444443333333222 3344445566777888
Q ss_pred HHHHHHcC
Q 012321 420 MAKILEAH 427 (466)
Q Consensus 420 La~~L~~~ 427 (466)
+.+.|+++
T Consensus 305 l~~~L~~~ 312 (385)
T PRK09276 305 LVEGLRKL 312 (385)
T ss_pred HHHHHHhC
Confidence 88999875
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-21 Score=195.53 Aligned_cols=223 Identities=20% Similarity=0.257 Sum_probs=161.9
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
..+|+++....|++.+++++|. ++.|++++|+ +++.+++.+++.+| |+|++++|.|+.... .++..|+++..+
T Consensus 53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~----~~~~~g~~~~~v 128 (364)
T PRK04781 53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAV----CARLQNAPLVEV 128 (364)
T ss_pred hccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHH----HHHHcCCEEEEE
Confidence 5667777788999999999986 3456666665 99999999999999 799999998875332 234457776665
Q ss_pred CC--------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCccc-h---hc-
Q 012321 281 DP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK-A---LS- 345 (466)
Q Consensus 281 d~--------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~~-p---l~- 345 (466)
+. .|++++++.+...++++|++++|+||||.+++.+++.++++. +++++|+||+|....... + ..
T Consensus 129 ~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~ 208 (364)
T PRK04781 129 PLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLAR 208 (364)
T ss_pred ecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhh
Confidence 42 256777655433359999999999999999998888888764 478999999987543211 1 11
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh-----hHHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-----MKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg-----L~tl~~R~e~~~~na~~L 420 (466)
...-+++.|+||.++.+| ++.||+++++++++.+++.+..++. +.....++... ...+..++++..++++.+
T Consensus 209 ~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l 285 (364)
T PRK04781 209 YDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRRCQAPYPV--PTPCAALAEQALSAPALAVTARRVAEVRAERERL 285 (364)
T ss_pred CCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHhccCCCCC--CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 123489999999999777 4689999999999999887665543 23222222222 244555667778889999
Q ss_pred HHHHHcCCCcEEE
Q 012321 421 AKILEAHPKVKRV 433 (466)
Q Consensus 421 a~~L~~~p~V~~V 433 (466)
.+.|+++|.+..+
T Consensus 286 ~~~L~~~~~~~~~ 298 (364)
T PRK04781 286 HAALAQLPGVRRV 298 (364)
T ss_pred HHHHHhCCCCCeE
Confidence 9999988766444
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=191.71 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=161.3
Q ss_pred hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
....|++.+++++ |. ++.++++++++|+..++.+++++||+|++++|+|...... ++..|+++..++.
T Consensus 69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~ 144 (393)
T PRK05764 69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEM----VKLAGGVPVFVPT 144 (393)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHH----HHHcCCEEEEEec
Confidence 3567777777765 32 3455555566999999999999999999999999875433 3456777766653
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----h-----
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A----- 343 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----p----- 343 (466)
.|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++++|++|....... +
T Consensus 145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 223 (393)
T PRK05764 145 GEENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLS 223 (393)
T ss_pred CcccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcC
Confidence 257899999876 4899999999999999975 7889999999999999999987543211 1
Q ss_pred -hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 012321 344 -LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL 418 (466)
Q Consensus 344 -l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~ 418 (466)
...+.++++.|+||.++.+|. +.|+++++++++++++......+...++..++.+.+.+ +.+....++..+++.
T Consensus 224 ~~~~~~~i~~~s~SK~~~~~G~-RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK05764 224 PELRDRTITVNGFSKAYAMTGW-RLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRD 302 (393)
T ss_pred CCCcCCEEEEecCcccccCccc-eeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 112467999999999987774 57999999999999888776655566666666555544 334444556677888
Q ss_pred HHHHHHHcCCCcE
Q 012321 419 RMAKILEAHPKVK 431 (466)
Q Consensus 419 ~La~~L~~~p~V~ 431 (466)
.+.+.|++++.+.
T Consensus 303 ~l~~~L~~~~g~~ 315 (393)
T PRK05764 303 LMVDGLNEIPGLE 315 (393)
T ss_pred HHHHHHhhCCCCc
Confidence 8999999886553
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=195.63 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=161.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCC---------------EEEEcCCCccchHHHHHhhccc
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG---------------HIVTTTDCYRKTRIFIETVLPK 272 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD---------------~VLv~~~~y~~t~~~~~~~l~~ 272 (466)
..+..+++++++++++|.++++++++|++|+.+++.+++++|| +||++.+.|......+...+..
T Consensus 43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~ 122 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL 122 (363)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHh
Confidence 4577899999999999999999999999999999999999998 8888875554321011233444
Q ss_pred CCcEEEEeC---CCCHHHHHHhccCCCceEEE-EeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCC
Q 012321 273 MGITATVID---PADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348 (466)
Q Consensus 273 ~gi~v~~vd---~~D~e~Le~ai~~~~tklV~-lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~ga 348 (466)
.|.++.+++ ..|+++++++|+++ |++|+ +++|+||+|.+.|+++|.++||++|+++++|+++...+ .....+|+
T Consensus 123 ~g~~~v~v~~~~~~d~~~le~ai~~~-t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~ 200 (363)
T TIGR01437 123 GGGKVVEAGYANECSAEQLEAAITEK-TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGA 200 (363)
T ss_pred cCCeEEEEcCCCCCCHHHHHHhcChh-ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCC
Confidence 577766665 35899999999875 88655 68899999999999999999999999999999997332 33456789
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc-----hHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-----NPNAAYLIIRGM-KTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l-----s~~~A~l~lrgL-~tl~~R~e~~~~na~~La~ 422 (466)
|++++|+||++.|+. +|++++++++++.++......+..+ +......++..+ +....+++++.+++..+.+
T Consensus 201 D~~~~S~~K~l~gp~---~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~ 277 (363)
T TIGR01437 201 DLVIYSGAKAIEGPT---SGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIE 277 (363)
T ss_pred CEEEEeCCcccCCCc---eEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 999999999998773 7999999888887654332221111 101111112111 1122345556667888999
Q ss_pred HHHcCCCcEEE
Q 012321 423 ILEAHPKVKRV 433 (466)
Q Consensus 423 ~L~~~p~V~~V 433 (466)
.|++.|++...
T Consensus 278 ~L~~i~g~~~~ 288 (363)
T TIGR01437 278 ALNTLKGVSAS 288 (363)
T ss_pred HHhcCCCeEEE
Confidence 99999887554
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=190.63 Aligned_cols=212 Identities=17% Similarity=0.175 Sum_probs=151.8
Q ss_pred hHHHHHHHHHhhh----C--C-CcEEEeC-CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 211 TTVVVEEKMSALE----G--A-ESTVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g--~-e~~v~~~-SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
....|++.+++++ | . ++.++++ ++++++..++.+++.+||+|++++|+|+.....+. ..|.++..++
T Consensus 70 g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~----~~g~~~~~v~~ 145 (387)
T PRK08960 70 GLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLR----LVEGAAQLVPV 145 (387)
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCCeEEEEec
Confidence 3456667676664 3 1 3444455 55599999999999999999999999998765443 2344544432
Q ss_pred ------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chhccC-
Q 012321 282 ------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG- 347 (466)
Q Consensus 282 ------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl~~g- 347 (466)
..|++++++.++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... ......
T Consensus 146 ~~~~~~~~d~~~l~~~~~~~-~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~ 224 (387)
T PRK08960 146 GPDSRYQLTPALVERHWNAD-TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDD 224 (387)
T ss_pred CcccCCCCCHHHHHHHhCcc-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccC
Confidence 24689999988875 899999999999999987 556777899999999999998653221 112222
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e~~~~na~~La~ 422 (466)
..+++.|+||.++.+| .+.||++++++++++++........+.+.+.+..+...+ +.+....++..++++.+.+
T Consensus 225 ~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~ 303 (387)
T PRK08960 225 DAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLP 303 (387)
T ss_pred CEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 2378999999999877 468999999999999888776555444544433332222 3444555667778888999
Q ss_pred HHHcCC
Q 012321 423 ILEAHP 428 (466)
Q Consensus 423 ~L~~~p 428 (466)
.|++++
T Consensus 304 ~L~~~~ 309 (387)
T PRK08960 304 ALRELG 309 (387)
T ss_pred HHHhcC
Confidence 998864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-20 Score=191.02 Aligned_cols=212 Identities=12% Similarity=0.150 Sum_probs=151.7
Q ss_pred HHHHHHHHhhh----CC---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 213 VVVEEKMSALE----GA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 213 ~~Lee~lA~l~----g~---e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
..|++.+++++ |. ++.+++++| ++|+..++.+++++||+|++++|+|+.....+. ..|.++..++
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~ 144 (384)
T PRK06348 69 VELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIE----MVGGKPIILETYE 144 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH----HcCCEEEEecCCc
Confidence 45666666655 32 344555555 599999999999999999999999998664443 3455554443
Q ss_pred --C--CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---h---hc--c
Q 012321 282 --P--ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A---LS--L 346 (466)
Q Consensus 282 --~--~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---p---l~--~ 346 (466)
. .|+++|+++++++ +++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....... + +. .
T Consensus 145 ~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 223 (384)
T PRK06348 145 EDGFQINVKKLEALITSK-TKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP 223 (384)
T ss_pred CcCCcCCHHHHHHhhCcC-ccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCc
Confidence 1 4789999988764 899999999999999986 6788888999999999999987643211 1 11 2
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---H-HHHHHHHHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---K-TLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~-tl~~R~e~~~~na~~La~ 422 (466)
+..+++.|+||.++.+| ++.||++++++++++++........+.+......+...+ + .+....+...++++.+.+
T Consensus 224 ~~vi~~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~ 302 (384)
T PRK06348 224 ERTITFGSFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYK 302 (384)
T ss_pred CcEEEEecchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999998777 568999999999998887776544444454433333332 2 233344555677788888
Q ss_pred HHHcCCCc
Q 012321 423 ILEAHPKV 430 (466)
Q Consensus 423 ~L~~~p~V 430 (466)
.|++++.+
T Consensus 303 ~L~~~~~~ 310 (384)
T PRK06348 303 RIESIPNL 310 (384)
T ss_pred HHhcCCCc
Confidence 89877553
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-20 Score=193.16 Aligned_cols=210 Identities=15% Similarity=0.202 Sum_probs=154.8
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. ++.+++++| ++|+..++.+++++||+|++++|.|...... ++..|.++..++.
T Consensus 93 ~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~ 168 (413)
T PLN00175 93 VPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKTVTL 168 (413)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEEC
Confidence 344555555543 42 234555555 5999999999999999999999999875433 3446777666642
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---h-hc----
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LS---- 345 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---p-l~---- 345 (466)
.|+++|++.+.++ +++|++++|+||||.+++ +++|+++|+++++++|+|++|....... + ..
T Consensus 169 ~~~~~~~~~~~l~~~~~~~-~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~ 247 (413)
T PLN00175 169 RPPDFAVPEDELKAAFTSK-TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM 247 (413)
T ss_pred CcccCCCCHHHHHHhcCcC-ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC
Confidence 4689999999774 999999999999999985 6788999999999999999987543211 1 11
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~La 421 (466)
.+..|++.|+||.++.+|. +.||+++++++++.++........+.+....+.+...++ .+....+++.++++.+.
T Consensus 248 ~~~vi~i~SfSK~~~~~G~-RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 326 (413)
T PLN00175 248 YERTVTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILV 326 (413)
T ss_pred cCcEEEEecchhhccCcch-heeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 1345899999999997774 579999999999999887765555555555554444442 34555667778888999
Q ss_pred HHHHcC
Q 012321 422 KILEAH 427 (466)
Q Consensus 422 ~~L~~~ 427 (466)
+.|+++
T Consensus 327 ~~L~~~ 332 (413)
T PLN00175 327 EGLKEV 332 (413)
T ss_pred HHHHHC
Confidence 999886
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=192.54 Aligned_cols=218 Identities=18% Similarity=0.289 Sum_probs=163.1
Q ss_pred CCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.+|+++...+|++.+++++|.. +.+++++|+ +++..++.+++++||+|++++|.|.... ..++..|+++..++
T Consensus 58 ~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~ 133 (356)
T PRK04870 58 NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEFVGVP 133 (356)
T ss_pred ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEEEEec
Confidence 3444556789999999999863 367777777 8888888888999999999999998644 33455677777764
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---hh-ccCCcEEE
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---AL-SLGADLVL 352 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---pl-~~gaDivv 352 (466)
..|++++++++.+.++++|++++|+||||.+++.+++.++++..++++|+|++|....... .+ .....+++
T Consensus 134 ~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~ 213 (356)
T PRK04870 134 LTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVM 213 (356)
T ss_pred CCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEE
Confidence 3478999999865459999999999999999999888888877789999999986432211 11 22345899
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l---~lrgL~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
.|+|| ++.+| .+.|+++++++++++++..+..+ ..+.+..+. ++...+.+...+++..++++.+.+.|++.|+
T Consensus 214 ~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~~~~--~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 289 (356)
T PRK04870 214 RTVSK-LGLAG-LRLGYLAGHPAWIAELDKVRPPY--NVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPG 289 (356)
T ss_pred ecchh-hhhHH-HhhhhhhCCHHHHHHHHHccCCC--cCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999 77666 45799999999999888765323 233333332 3333445666677788889999999998877
Q ss_pred c
Q 012321 430 V 430 (466)
Q Consensus 430 V 430 (466)
+
T Consensus 290 ~ 290 (356)
T PRK04870 290 V 290 (356)
T ss_pred c
Confidence 6
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-20 Score=191.41 Aligned_cols=211 Identities=17% Similarity=0.181 Sum_probs=150.2
Q ss_pred hHHHHHHHHHhhhCC-----CcEEEeCCHH-HHHHHHHHHhccC---CCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALEGA-----ESTVIMASGM-SASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~-----e~~v~~~SG~-aAi~~al~all~p---GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.++.+.+.+.+.+|. ++.+++++|+ +++..++.+++++ ||.|+++.|.|..... .+...|+++..++
T Consensus 70 lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~vp 145 (396)
T PRK09147 70 LREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG----AALLAGAEPYFLN 145 (396)
T ss_pred HHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH----HHHhcCCEEEEec
Confidence 344444444444463 2367776665 9999999999999 9999999999987543 3345577776664
Q ss_pred C-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---h---h-
Q 012321 282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A---L- 344 (466)
Q Consensus 282 ~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---p---l- 344 (466)
. .|++++++.+.+ ++++|++++|+||||.+++ +++|+++|++++++||+||+|....... + +
T Consensus 146 ~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 224 (396)
T PRK09147 146 CDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLE 224 (396)
T ss_pred cCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhh
Confidence 2 468899887766 4999999999999999985 6788888999999999999987643211 1 1
Q ss_pred ---cc-----CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHH
Q 012321 345 ---SL-----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQ 413 (466)
Q Consensus 345 ---~~-----gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~ 413 (466)
.. ...+++.|+||.++.+| .+.||+++++++++++.+.....+...+......+...+ +.+....++.
T Consensus 225 ~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~ 303 (396)
T PRK09147 225 AAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALY 303 (396)
T ss_pred hccccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 12399999999998887 568999999999999887766555455554433332222 3344555666
Q ss_pred HHHHHHHHHHHHcC
Q 012321 414 NSTALRMAKILEAH 427 (466)
Q Consensus 414 ~~na~~La~~L~~~ 427 (466)
.++++.+.+.|+++
T Consensus 304 ~~~~~~~~~~L~~~ 317 (396)
T PRK09147 304 REKFDAVTPILAPV 317 (396)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777788887763
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=193.54 Aligned_cols=220 Identities=16% Similarity=0.175 Sum_probs=159.0
Q ss_pred chhHHHHHHHHHhhhCC--CcEEEeCCH-HHHHHHHHHH----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 209 NPTTVVVEEKMSALEGA--ESTVIMASG-MSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~--e~~v~~~SG-~aAi~~al~a----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
....+.+++.+++++|. ++.+++++| ++++..++.+ ++++||+||++++.|++....+....+..|+++..++
T Consensus 66 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~ 145 (406)
T PRK09295 66 TEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIP 145 (406)
T ss_pred HHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEe
Confidence 45577889999999986 345555555 5899888876 4689999999999999876555555667788888775
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecc
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA 355 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~ 355 (466)
. .|+++|+++++++ |++|++++|+||||.+.|+++|.++||++|+++++|++++.+.. .+...+++|+++.|+
T Consensus 146 ~~~~~~~d~~~l~~~i~~~-t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~ 224 (406)
T PRK09295 146 LNPDGTLQLETLPALFDER-TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSG 224 (406)
T ss_pred cCCCCCCCHHHHHHhcCCC-cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeeh
Confidence 3 4789999999874 99999999999999999999999999999999999999876543 233356899999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHH----------------------HhCCCchHHHHHHHHHhhHHH-----HH
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMKTL-----HL 408 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~----------------------~~G~~ls~~~A~l~lrgL~tl-----~~ 408 (466)
+|.++++| .|+++.++++++.+..... .-.++.+....+.+..+++.+ +.
T Consensus 225 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~ 301 (406)
T PRK09295 225 HKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNN 301 (406)
T ss_pred hhccCCCC---cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHH
Confidence 99777655 5888888887765431100 011122222222222233322 22
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 409 RVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
..++..+.++++.+.|++.+.++.
T Consensus 302 i~~~~~~l~~~l~~~l~~~~~~~~ 325 (406)
T PRK09295 302 IAEYEQNLMHYALSQLESVPDLTL 325 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEE
Confidence 334555677888888888887643
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-20 Score=188.08 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+..+++++.+++++|.+ +.+++++|++++..++.+++++||+|++..+.|+++...+....+..|+++..++.
T Consensus 44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 123 (376)
T TIGR01977 44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG 123 (376)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence 66889999999999963 34555677799999999999999999999999988766555556666888877653
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccccccc
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~lg 360 (466)
.|+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|+++
T Consensus 124 ~~d~~~l~~~~~~~-~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~ 202 (376)
T TIGR01977 124 LISPERIKRAIKTN-TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL 202 (376)
T ss_pred CcCHHHHHHhcCCC-CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEeccccccc
Confidence 3799999999774 99999999999999999999999999999999999999876543 23345689999999999998
Q ss_pred cccCceEEEEEeChHHHHHHHHH-----------------HHHhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIRNL-----------------HHVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTAL 418 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~~~-----------------~~~~G~~ls~~~A~l~lrgL~tl-----~~R~e~~~~na~ 418 (466)
++.+ .|++++.++..+..+... +...| +.+....+.+...++.+ +...+++.+.++
T Consensus 203 ~p~g-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~ 280 (376)
T TIGR01977 203 GPQG-TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESG-TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTE 280 (376)
T ss_pred CCCC-ceEEEEcCCcCcCceecCCCccccccccccccchhhccCC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 8753 245555554322221100 00111 12221112222233332 334566778888
Q ss_pred HHHHHHHcCCCcE
Q 012321 419 RMAKILEAHPKVK 431 (466)
Q Consensus 419 ~La~~L~~~p~V~ 431 (466)
++.+.|++.+.++
T Consensus 281 ~~~~~l~~~~~~~ 293 (376)
T TIGR01977 281 KLLNGLREINKVK 293 (376)
T ss_pred HHHHHHhcCCCeE
Confidence 8999998887653
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=191.65 Aligned_cols=216 Identities=14% Similarity=0.185 Sum_probs=158.1
Q ss_pred chhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 209 NPTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.+....|++.+++++ |. ++.++++++++++..++.+++++||+|++++|+|...... +...|+++..+
T Consensus 69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~----~~~~g~~~~~v 144 (391)
T PRK08361 69 NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVED----AKIAEAKPIRI 144 (391)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHH----HHHcCCEEEEE
Confidence 344567777777765 32 4455555566999999999999999999999999886543 33456666555
Q ss_pred CC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch-h-
Q 012321 281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-L- 344 (466)
Q Consensus 281 d~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p-l- 344 (466)
+. .|++++++.++++ +++|++++|+||||.++| +++|+++|+++++++|+|++|...... .+ .
T Consensus 145 ~~~~~~~~~~d~~~l~~~i~~~-~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 223 (391)
T PRK08361 145 PLREENEFQPDPDELLELITKR-TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIK 223 (391)
T ss_pred ecCCccCCCCCHHHHHHhcccc-cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhh
Confidence 32 5789999999875 999999999999999998 788999999999999999998654321 11 1
Q ss_pred -ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh------HHHHHHHHHHHHHH
Q 012321 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQNSTA 417 (466)
Q Consensus 345 -~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL------~tl~~R~e~~~~na 417 (466)
....++++.|+||.++.+| .+.||+++++++++++...........+.+....+...+ +.+....++..++.
T Consensus 224 ~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (391)
T PRK08361 224 YAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERR 302 (391)
T ss_pred cCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 1235689999999998776 457999999999998877665444444544444333333 23444555667778
Q ss_pred HHHHHHHHcCCCc
Q 012321 418 LRMAKILEAHPKV 430 (466)
Q Consensus 418 ~~La~~L~~~p~V 430 (466)
+.+.+.|++.+.+
T Consensus 303 ~~~~~~L~~~~~~ 315 (391)
T PRK08361 303 KLVLKRLKEMPHI 315 (391)
T ss_pred HHHHHHHHhCCCC
Confidence 8888999887654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=188.76 Aligned_cols=210 Identities=18% Similarity=0.210 Sum_probs=153.7
Q ss_pred HHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHhccCC---CEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 212 TVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAG---GHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~---e~-~v~~~SG~-aAi~~al~all~pG---D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
...|++.+++++ |. .+ .|++++|+ +++..++.+++++| |+|++++|+|...... ++..|+++..
T Consensus 38 ~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~----~~~~g~~~~~ 113 (350)
T TIGR03537 38 TKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERG----ALFAGGEPTA 113 (350)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHH----HHhcCCEEEE
Confidence 345566666553 52 23 67777776 89999999999887 6999999999986543 3456777766
Q ss_pred eCC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccch----hc
Q 012321 280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA----LS 345 (466)
Q Consensus 280 vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~p----l~ 345 (466)
++. .|+++++++++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|.......+ ..
T Consensus 114 v~~~~~~~~~~d~~~l~~~~~~~-~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 192 (350)
T TIGR03537 114 VKLKKEDGFLLRLEKVEKSILEE-TKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALE 192 (350)
T ss_pred cccCcccCCccCHHHHHHhhhhc-cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhh
Confidence 542 2789999988774 999999999999999998 88899999999999999999875432211 11
Q ss_pred --cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Q 012321 346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 --~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg---L~tl~~R~e~~~~na~~L 420 (466)
....+++.|+||.++.+| .+.|+++++++++++++.....++...+......+... .+.+..+.+++.++...+
T Consensus 193 ~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~ 271 (350)
T TIGR03537 193 VGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLF 271 (350)
T ss_pred cCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 223488999999998877 46789999999999998877666655444333322222 234455556677778888
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 272 ~~~l~~~ 278 (350)
T TIGR03537 272 IEFFNKV 278 (350)
T ss_pred HHHHHHC
Confidence 8888775
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=192.57 Aligned_cols=211 Identities=20% Similarity=0.249 Sum_probs=168.5
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.+|.+.+||+++++++|.+.+++++||++|+.+++.++ +++||+||+++++|.++...+ ...|+++.++|.
T Consensus 31 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~----~~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 31 TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMI----VLLGATPVMVDVDRDT 106 (379)
T ss_pred CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHH----HHcCCEEEEEecCCCc
Confidence 46889999999999999999999999999999999998 899999999999999876443 346888877753
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---hhccCCcEEEecccc
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLHSATK 357 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---pl~~gaDivv~S~sK 357 (466)
.|+++++++++++ |++|+ |+|++|.+.|+++|.++|+++|+++|+|++++.+.... ....|.++..++.+|
T Consensus 107 ~~~d~~~l~~~i~~~-tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K 182 (379)
T PRK11658 107 LMVTPEAIEAAITPR-TKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIK 182 (379)
T ss_pred CCcCHHHHHHhcccC-CeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCC
Confidence 3789999999874 99987 67789999999999999999999999999987654332 234455555566668
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHH----------------------hC--CCchHHHHHHHHHhhHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV----------------------LG--GALNPNAAYLIIRGMKTLHLRVQQ 412 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~----------------------~G--~~ls~~~A~l~lrgL~tl~~R~e~ 412 (466)
.+.++ .||+++++ ++++++++.++.. .| ..++.+.|.+.+..++.++..+++
T Consensus 183 ~l~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~ 259 (379)
T PRK11658 183 NITCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNAR 259 (379)
T ss_pred cCccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 77654 47888875 7888887764421 11 224556777778888889999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 012321 413 QNSTALRMAKILEAHPK 429 (466)
Q Consensus 413 ~~~na~~La~~L~~~p~ 429 (466)
.+++++.+.+.|++.|.
T Consensus 260 r~~~a~~~~~~L~~~~~ 276 (379)
T PRK11658 260 RREIAARYLQALADLPF 276 (379)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999988763
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=189.83 Aligned_cols=219 Identities=16% Similarity=0.275 Sum_probs=160.8
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+++...+|++.++++++. .+.+++++| ++++..++.+++++||+|++++|+|+... ..+...|+++..++.
T Consensus 49 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~ 124 (346)
T TIGR01141 49 HRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPL 124 (346)
T ss_pred hcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecc
Confidence 345566678999999999985 344445555 58998888899999999999999997533 234456777777653
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCcc-ch---hc-cCCcE
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-KA---LS-LGADL 350 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~~-~p---l~-~gaDi 350 (466)
.|+++++++++++ +++|++++|+||||.+.+++++.++++.+ |+++|+|++|...... .+ .. ...++
T Consensus 125 ~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i 203 (346)
T TIGR01141 125 DEDGQLDLEDILVAIDDK-PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLI 203 (346)
T ss_pred CCCCCCCHHHHHHhcCCC-CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEE
Confidence 5789999988764 99999999999999999999999999887 9999999998742211 11 11 22358
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l---rgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++.|+||+++.+| .+.|+++++++++++++.....++ .++.....+. +....+..+.++..++++.+.+.|+++
T Consensus 204 ~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 280 (346)
T TIGR01141 204 VLRTLSKAFGLAG-LRIGYAIANAEIIDALNKVRAPFN--LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL 280 (346)
T ss_pred EEehhhHhhhchh-hhceeeecCHHHHHHHHhccCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999998776 457999999999988877654433 2333322222 222335556677788889999999988
Q ss_pred CCcE
Q 012321 428 PKVK 431 (466)
Q Consensus 428 p~V~ 431 (466)
|++.
T Consensus 281 ~g~~ 284 (346)
T TIGR01141 281 PGLE 284 (346)
T ss_pred CCCE
Confidence 7654
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=191.49 Aligned_cols=168 Identities=16% Similarity=0.224 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHhhhCCC--cEE-EeCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGAE--STV-IMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v-~~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...+.+++.+++++|.+ +.+ +++++++++.+++.++ +++||+||++++.|++.+..+...++..|+++..++.
T Consensus 60 ~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 139 (398)
T TIGR03392 60 ARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI 139 (398)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence 44677899999999973 345 4555569999999887 4789999999999998655555556777888887753
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.|+++++++++++ |++|++++|+||||.+.|+++|.++||++|+++++|++++.+.. .+...+++|+++.|++
T Consensus 140 ~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~ 218 (398)
T TIGR03392 140 GADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGH 218 (398)
T ss_pred CCCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecc
Confidence 3789999999875 99999999999999999999999999999999999999865432 2333467999999999
Q ss_pred cccccccCceEEEEEeChHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~l~ 381 (466)
|.++++| .|+++.++++++++.
T Consensus 219 K~~gp~G---~G~l~~~~~~~~~~~ 240 (398)
T TIGR03392 219 KLYGPTG---IGVLYGKTELLEAMP 240 (398)
T ss_pred cccCCCc---eEEEEEcHHHHhhCC
Confidence 9887654 589999988887664
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=191.44 Aligned_cols=215 Identities=18% Similarity=0.244 Sum_probs=161.9
Q ss_pred ccCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 203 EYGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g~e-~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.|.+|+++....|++.+++++|.+ +.+++++|+ +++..++ .++.+| .|++.+|+|..... .++..|+++..+
T Consensus 40 ~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~-~~l~~g-~vl~~~p~y~~~~~----~~~~~g~~~~~~ 113 (330)
T TIGR01140 40 AWARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLP-RLLAPG-RVLVLAPTYSEYAR----AWRAAGHEVVEL 113 (330)
T ss_pred HHhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHH-HHhCCC-eEEEeCCCcHHHHH----HHHHcCCEEEEe
Confidence 467778777899999999999973 677777777 6777654 446777 69999999987543 345678888887
Q ss_pred CCCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccch-h----ccCCcEEE
Q 012321 281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA-L----SLGADLVL 352 (466)
Q Consensus 281 d~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~p-l----~~gaDivv 352 (466)
+ |++++++.+++ +++|++++|+||||.+.+ +++|+++|+++|+++|+|++|........ . ..+.++++
T Consensus 114 ~--d~~~l~~~~~~--~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~ 189 (330)
T TIGR01140 114 P--DLDRLPAALEE--LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL 189 (330)
T ss_pred C--CHHHHHhhccc--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence 7 89999999843 789999999999999998 66678888999999999999875443211 1 12456999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~---tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
.|+||+++.+| .+.|++++++++++++......+ ..+...+..+.+.++ ......++.+++.+.+.+.|++++.
T Consensus 190 ~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 266 (330)
T TIGR01140 190 RSLTKFFGLAG-LRLGFVVAHPALLARLREALGPW--TVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGG 266 (330)
T ss_pred EecchhhcCch-hhhhheeCCHHHHHHHHhcCCCC--CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999776 56799999999998887665433 234444444333333 3344556777888899999999876
Q ss_pred c
Q 012321 430 V 430 (466)
Q Consensus 430 V 430 (466)
+
T Consensus 267 ~ 267 (330)
T TIGR01140 267 L 267 (330)
T ss_pred c
Confidence 5
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=192.21 Aligned_cols=209 Identities=13% Similarity=0.140 Sum_probs=148.9
Q ss_pred HHHHHHHHhhh----CC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 213 VVVEEKMSALE----GA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 213 ~~Lee~lA~l~----g~----e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
..|++.+++++ |. ++.+++++| ++++..++.+++++||+|++++|+|+.....+ ...|+++..++.
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~ 151 (394)
T PRK05942 76 ASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGP----LIAGAQIYPIILK 151 (394)
T ss_pred HHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCEEEEeecC
Confidence 45666666654 42 334666555 49999999999999999999999999865433 345676665532
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch---hc-
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA---LS- 345 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p---l~- 345 (466)
.|++++++.+++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... .+ +.
T Consensus 152 ~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~ 230 (394)
T PRK05942 152 PENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG 230 (394)
T ss_pred CccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC
Confidence 478999998876 4999999999999999997 778899999999999999998643221 11 11
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~L 420 (466)
.+..+++.|+||.|+.+| .+.||++++++++++++......+...+...+..+...++ .+....++..++.+.+
T Consensus 231 ~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 309 (394)
T PRK05942 231 AKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFL 309 (394)
T ss_pred ccccEEEEecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 123588899999998776 4679999999999999887764443344433333333332 2333445556677778
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|++.
T Consensus 310 ~~~L~~~ 316 (394)
T PRK05942 310 IQGLGEL 316 (394)
T ss_pred HHHHHHC
Confidence 8888765
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=190.31 Aligned_cols=213 Identities=13% Similarity=0.068 Sum_probs=152.9
Q ss_pred chhHHHHHHHHHhhh----CC---Cc-EEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 209 NPTTVVVEEKMSALE----GA---ES-TVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~----g~---e~-~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.+....|++++++++ |. ++ .+++++| ++++..++.+++.+||+|++++|+|+..... ++..|+++..
T Consensus 69 ~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~g~~~~~ 144 (389)
T PRK08068 69 FRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSG----VALARAQFET 144 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEE
Confidence 344667777777765 42 22 4545554 5899999999999999999999999876533 3446666655
Q ss_pred eCC-------CCHHHHHHhccCCCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc--c--h-h
Q 012321 280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ--K--A-L 344 (466)
Q Consensus 280 vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~~--~--p-l 344 (466)
++. .|++++++.+++ ++++|++++|+||||.+++. ++|.++|+++++++|+|++|...... . + .
T Consensus 145 i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~ 223 (389)
T PRK08068 145 MPLIAENNFLPDYTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFL 223 (389)
T ss_pred eecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChh
Confidence 542 267889988876 48999999999999999975 57788899999999999998542211 1 1 1
Q ss_pred c----cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH----HhhHHHHHHHHHHHHH
Q 012321 345 S----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII----RGMKTLHLRVQQQNST 416 (466)
Q Consensus 345 ~----~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l----rgL~tl~~R~e~~~~n 416 (466)
. ....+++.|+||.|+.+| .+.||+++++++++.++.....+..+..+..+..+. .+-+.++...++..++
T Consensus 224 ~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 302 (389)
T PRK08068 224 QTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESR 302 (389)
T ss_pred hCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 123489999999998777 568999999999999988776555443332222222 2234455666777788
Q ss_pred HHHHHHHHHcC
Q 012321 417 ALRMAKILEAH 427 (466)
Q Consensus 417 a~~La~~L~~~ 427 (466)
++.+.+.|+++
T Consensus 303 r~~~~~~L~~~ 313 (389)
T PRK08068 303 RNAFISACREI 313 (389)
T ss_pred HHHHHHHHHHC
Confidence 88888888875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=195.03 Aligned_cols=208 Identities=15% Similarity=0.150 Sum_probs=152.9
Q ss_pred HHHHHHHHhhhC----CCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----CC
Q 012321 213 VVVEEKMSALEG----AESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----PA 283 (466)
Q Consensus 213 ~~Lee~lA~l~g----~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----~~ 283 (466)
..|++.++++++ .++.|++++|+ +++..++.+++++||.|++++|+|+..... ++..|+++..++ ..
T Consensus 124 ~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~g~ 199 (431)
T PRK15481 124 PELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINM----LRYAGFSASPVSVDAEGM 199 (431)
T ss_pred HHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCeEEeeccCCCCC
Confidence 456677777654 24456666665 999999999999999999999999986543 445566666654 35
Q ss_pred CHHHHHHhccCCCceEEEEe-CCCCCCcccccHH---HHHHHHHhc-CCEEEEeCCCCCCCc---cchhc--cCCcEEEe
Q 012321 284 DMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLCHKK-GAIVCIDGTFATPLN---QKALS--LGADLVLH 353 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~le-sPsNPtG~v~dl~---~I~ela~~~-gillIvD~t~a~~~~---~~pl~--~gaDivv~ 353 (466)
|+++|++++++ ++++|+++ +|+||||.+++.+ +|.++|+++ ++++|+||+|..... ..++. ....+++.
T Consensus 200 ~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~ 278 (431)
T PRK15481 200 QPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIR 278 (431)
T ss_pred CHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEe
Confidence 78999999876 48999987 9999999999865 899999999 999999999864321 11121 12348999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na~~La~~L~~~ 427 (466)
|+||.++ +| .+.||+++++++++++...........+...++++...++ .+....+...++.+.+.+.|+++
T Consensus 279 SfSK~~~-~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~ 356 (431)
T PRK15481 279 SVSKALG-PD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY 356 (431)
T ss_pred eeccccC-CC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999 76 5678999999999988765554433445554444433332 24445566778888888988875
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=190.96 Aligned_cols=210 Identities=13% Similarity=0.120 Sum_probs=149.3
Q ss_pred HHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~---e~-~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. ++ .|++++|+ +++..++.+++.+||+|++++|+|...... +...|+++..++.
T Consensus 70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~ 145 (388)
T PRK07366 70 TLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGG----VYLAGGQIYPMPL 145 (388)
T ss_pred CHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEEC
Confidence 445666666654 42 33 57777776 899999999999999999999999986543 3445766665532
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc------hhcc
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------ALSL 346 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~------pl~~ 346 (466)
.|++++++.+.++ +++|++++|+||||.+++ +++|+++|+++|++||+||+|....... ....
T Consensus 146 ~~~~~~~~d~~~l~~~~~~~-~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 224 (388)
T PRK07366 146 RAENDFLPVFADIPTEVLAQ-ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQA 224 (388)
T ss_pred CCccCCCCCHHHHHHhhccc-ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhC
Confidence 3567887777654 899999999999999986 5677788999999999999987543211 1111
Q ss_pred ----CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc-hHH--HHHHHHH-hhHHHHHHHHHHHHHHH
Q 012321 347 ----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPN--AAYLIIR-GMKTLHLRVQQQNSTAL 418 (466)
Q Consensus 347 ----gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l-s~~--~A~l~lr-gL~tl~~R~e~~~~na~ 418 (466)
...|++.|+||.++.+| .+.||+++++++++++++.+...+.+. +.. .+...+. .-+.++...+...++++
T Consensus 225 ~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~ 303 (388)
T PRK07366 225 DPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRD 303 (388)
T ss_pred CCCcccEEEEeecccccCCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 12378899999998887 468999999999999988776554333 221 1212222 12345555666777888
Q ss_pred HHHHHHHcC
Q 012321 419 RMAKILEAH 427 (466)
Q Consensus 419 ~La~~L~~~ 427 (466)
.+.+.|+++
T Consensus 304 ~l~~~L~~~ 312 (388)
T PRK07366 304 AFINALHQI 312 (388)
T ss_pred HHHHHHHHC
Confidence 888889876
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=188.66 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=152.3
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-- 281 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-- 281 (466)
...|++.+++++ |. ++.++++++++|+..++.+++++||+|++++|+|+.....+ ...|.++..++
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~ 144 (388)
T PRK07337 69 LAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFV----AAAEGRPVLVPSG 144 (388)
T ss_pred CHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEeecC
Confidence 556777777664 42 34455555569999999999999999999999999866443 33455555443
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chhccCCc
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGAD 349 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl~~gaD 349 (466)
..|++++++.++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... ....++.+
T Consensus 145 ~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 223 (388)
T PRK07337 145 PAERFQLTAADVEAAWGER-TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDD 223 (388)
T ss_pred CccCCcCCHHHHHhhcCcc-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCC
Confidence 24789999999874 899999999999999986 678889999999999999998743221 12223333
Q ss_pred -EEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHH
Q 012321 350 -LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 350 -ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e~~~~na~~La~~ 423 (466)
+++.|+||.++.+|. +.||++++++++++++......+.+.+....+++...+ +.+....+++.++++.+.+.
T Consensus 224 vi~~~S~SK~~~~~G~-RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 302 (388)
T PRK07337 224 VITINSFSKYFNMTGW-RLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPA 302 (388)
T ss_pred EEEEEechhhcCCchh-heeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 568999999988774 58999999999999988776655444444443333322 33444455667778888888
Q ss_pred HHcC
Q 012321 424 LEAH 427 (466)
Q Consensus 424 L~~~ 427 (466)
|+++
T Consensus 303 L~~~ 306 (388)
T PRK07337 303 LESL 306 (388)
T ss_pred HHhc
Confidence 8875
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=191.52 Aligned_cols=218 Identities=19% Similarity=0.229 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...+++++.+++++|.+ +.++++++++++.+++.++ +++||+|+++++.|++....+.......|++++.++.
T Consensus 62 ~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~ 141 (403)
T TIGR01979 62 EAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPL 141 (403)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEec
Confidence 45778899999999974 3555555568988888764 5789999999999998765565556667888877753
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.|+++++++++++ +++|++++|+||||.+.|+++|.++||++|+++++|++++.+.. .+...+++|+++.|++
T Consensus 142 ~~~~~~~~~~l~~~i~~~-~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~ 220 (403)
T TIGR01979 142 DDDGTLDLDDLEKLLTEK-TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGH 220 (403)
T ss_pred CCCCCCCHHHHHHHhccC-CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecc
Confidence 4789999999874 99999999999999999999999999999999999999876543 3334568999999999
Q ss_pred cccccccCceEEEEEeChHHHHHHHHHHH--------------------Hh-CCCchHHHHHHHHHhhH---H--HHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH--------------------VL-GGALNPNAAYLIIRGMK---T--LHLRV 410 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~l~~~~~--------------------~~-G~~ls~~~A~l~lrgL~---t--l~~R~ 410 (466)
|++|+.| .|+++.++++++++..... .+ .++.+....+.+...++ . ++...
T Consensus 221 K~~gp~G---~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~ 297 (403)
T TIGR01979 221 KMYGPTG---IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIE 297 (403)
T ss_pred cccCCCC---ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9887554 5888888887776532110 00 01222222222222222 2 23345
Q ss_pred HHHHHHHHHHHHHHHcCCCcE
Q 012321 411 QQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~V~ 431 (466)
++..+.++.+.+.|++++.++
T Consensus 298 ~~~~~l~~~l~~~l~~~~g~~ 318 (403)
T TIGR01979 298 AHEHELTAYALERLGEIPGLR 318 (403)
T ss_pred HHHHHHHHHHHHHHhcCCCEE
Confidence 666777888888888887764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-20 Score=192.87 Aligned_cols=214 Identities=15% Similarity=0.135 Sum_probs=149.8
Q ss_pred hHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 211 TTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~--------e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
....|++.++++++. ++.++++++++|+.+++.+++++||+|++++|.|+..... ....|+++..++.
T Consensus 95 G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~~~~~~~ 170 (430)
T PLN00145 95 GLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEAR----AVFSGLEVRHFDL 170 (430)
T ss_pred cCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeeC
Confidence 356677777776532 4455555556999999999999999999999999984432 2334666666542
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-cc-
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SL- 346 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl-~~- 346 (466)
.|++++++.++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|....+. .++ ..
T Consensus 171 ~~~~~~~~d~~~l~~~~~~~-~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~ 249 (430)
T PLN00145 171 LPERGWEVDLEGVEALADEN-TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG 249 (430)
T ss_pred CcccCCcCCHHHHHHHhCcC-ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc
Confidence 4789999988875 999999999999999997 778889999999999999998754321 111 11
Q ss_pred --CCcEEEeccccccccccCceEEEEEe--ChHHHH------HHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012321 347 --GADLVLHSATKFIGGHNDVLAGSISG--SGKLVT------QIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ 411 (466)
Q Consensus 347 --gaDivv~S~sK~lgG~gdv~gG~vvg--~~eli~------~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e 411 (466)
..-|++.|+||.++.+|+ +.||+++ ++.+++ .++.... .....+.+.++.+...+ +.+...++
T Consensus 250 ~~~~vi~~~S~SK~~~~pG~-RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~ 327 (430)
T PLN00145 250 EVAPVLTLGSISKRWVVPGW-RLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTKEEFFTKTLG 327 (430)
T ss_pred ccCcEEEEeccccccCCCCe-eEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 234899999999999986 4688875 344443 2333322 22222333333332222 34566677
Q ss_pred HHHHHHHHHHHHHHcCCCcE
Q 012321 412 QQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~ 431 (466)
+.+++++.+.+.|++++.+.
T Consensus 328 ~~~~~~~~~~~~L~~~~g~~ 347 (430)
T PLN00145 328 LLKETADICYEKIKEIKCIT 347 (430)
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 78888999999999887654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=189.93 Aligned_cols=211 Identities=20% Similarity=0.278 Sum_probs=149.7
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.||++|....|++++++++|. +..|++++|+ +++..++. ++.+|+ |++.+|+|+.... .++..|+++..++
T Consensus 34 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~----~~~~~G~~v~~vp 107 (332)
T PRK06425 34 ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEYKG----YAFTHGIRISALP 107 (332)
T ss_pred cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHHHH----HHHHcCCeEEEEe
Confidence 6788999999999999999996 4567777777 88888876 567764 6667999987553 3455688877765
Q ss_pred CC----CHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc--h-h----ccC
Q 012321 282 PA----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--A-L----SLG 347 (466)
Q Consensus 282 ~~----D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~--p-l----~~g 347 (466)
.. |.+.++ ..++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....... + . ..+
T Consensus 108 ~~~~~~~~~~l~----~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~ 183 (332)
T PRK06425 108 FNLINNNPEILN----NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYG 183 (332)
T ss_pred CCcccCcHHHHh----hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCC
Confidence 42 333333 225899999999999999987 5667777899999999999987543211 1 1 112
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHH-hhHH-HHHHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-GMKT-LHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lr-gL~t-l~~R~e~~~~na~~La~~L~ 425 (466)
.-|++.|+||.++.+| ++.||+++++++++++++....+. .+...+..+.. ..+. ++...+...++++.+.+.|+
T Consensus 184 ~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 260 (332)
T PRK06425 184 NVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKITEPWS--VCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLE 260 (332)
T ss_pred CEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHcCCCCc--cCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999777 457999999999998887544332 22222222211 1222 23445666778888999998
Q ss_pred cC
Q 012321 426 AH 427 (466)
Q Consensus 426 ~~ 427 (466)
++
T Consensus 261 ~~ 262 (332)
T PRK06425 261 AM 262 (332)
T ss_pred HC
Confidence 76
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=182.07 Aligned_cols=254 Identities=19% Similarity=0.282 Sum_probs=199.6
Q ss_pred cccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc-cCCCEEEEcC
Q 012321 178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAGGHIVTTT 256 (466)
Q Consensus 178 ~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all-~pGD~VLv~~ 256 (466)
++|+|++.|+.++...+.+...++-.|+ .+|++.+||+.+|+++|.|.++|++||+..+.++++..+ ++|.+||+.+
T Consensus 26 LRSDTvT~PTdeMr~am~eA~vgDdVyG--eD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd 103 (384)
T KOG1368|consen 26 LRSDTVTVPTDEMRRAMAEASVGDDVYG--EDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGD 103 (384)
T ss_pred cccccccCChHHHHHHHhhcccCccccc--CCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEecc
Confidence 7899999999998888888877888888 679999999999999999999999999999989888877 4899999998
Q ss_pred CCccchHHHHHhhcccCCcEEEEeC-----CCCHHHHHHhccCC-------CceEEEEeCCCCCCc-ccccH---HHHHH
Q 012321 257 DCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNN-------NVSLFFTESPTNPFL-RCVDV---KLVSD 320 (466)
Q Consensus 257 ~~y~~t~~~~~~~l~~~gi~v~~vd-----~~D~e~Le~ai~~~-------~tklV~lesPsNPtG-~v~dl---~~I~e 320 (466)
..|--.++.- .+..-.|+.++.+. ..|+++|++++... .|++|.+|+.+|.+| .++++ ++|.+
T Consensus 104 ~~HI~~~E~g-g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~ 182 (384)
T KOG1368|consen 104 RAHIHRYEQG-GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA 182 (384)
T ss_pred chheeehhcc-ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence 8876544321 11122355555443 24799999999733 389999999999887 88875 56788
Q ss_pred HHHhcCCEEEEeCC--C----CCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchH-
Q 012321 321 LCHKKGAIVCIDGT--F----ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP- 393 (466)
Q Consensus 321 la~~~gillIvD~t--~----a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~- 393 (466)
+|+++|+.|++|.+ | +.++..+-+..-+|-|-..+||.+|.| +|.+++|+++++++.+..++.+|+.+-+
T Consensus 183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQs 259 (384)
T KOG1368|consen 183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQS 259 (384)
T ss_pred HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHH
Confidence 89999999999998 2 334444444445788999999999998 5889999999999999999999988755
Q ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 394 -NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 394 -~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
..|..++-.|......+++-.+.+..|+++++..+.+ +|.-|..
T Consensus 260 GvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i-~v~v~a~ 304 (384)
T KOG1368|consen 260 GVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI-RVEVPAV 304 (384)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccce-eeecchh
Confidence 3445555566655556777788999999999977655 4555543
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=184.43 Aligned_cols=212 Identities=21% Similarity=0.210 Sum_probs=163.3
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.+....+++.++++++.++.+++++|++++..++.+++++||+|++.++.|+..... +...|+++..++..|++++
T Consensus 60 ~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l 135 (360)
T TIGR00858 60 SPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDG----CRLSGARVRRYRHNDVEHL 135 (360)
T ss_pred cHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHH----HHhcCCceEEecCCCHHHH
Confidence 467889999999999988999999999888778888899999999999999876533 3445777777777889999
Q ss_pred HHhccCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-c--h------h-ccCCcEEEecc
Q 012321 289 EAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K--A------L-SLGADLVLHSA 355 (466)
Q Consensus 289 e~ai~~~---~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-~--p------l-~~gaDivv~S~ 355 (466)
++.+++. ++++|++++++|++|.+.|+++|.++|+++|+++|+|++|..+... . + . ..+.||++.|+
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 215 (360)
T TIGR00858 136 ERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL 215 (360)
T ss_pred HHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence 9988642 3799999999999999999999999999999999999998654221 1 0 1 13678999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l---~lrgL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
||++++. ||+++++++++++++..... .+...++..... +++.++....+.++..++++.+.+.|++++
T Consensus 216 sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 289 (360)
T TIGR00858 216 SKALGSY----GAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG 289 (360)
T ss_pred hhhhhcc----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999875 48999999998887654332 222333443322 233333344566778889999999998764
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-20 Score=191.30 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~a----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...+.+++.+++++|.+ +.++++++++++..++.+ .+++||+|+++++.|++.+..+....+..|+++..++.
T Consensus 76 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~ 155 (424)
T PLN02855 76 DAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGL 155 (424)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEec
Confidence 34678899999999972 344555556899888875 36899999999999998776666666777888877753
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.|++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+..++++|+++.|+|
T Consensus 156 ~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 234 (424)
T PLN02855 156 TPDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSH 234 (424)
T ss_pred CCCCCcCHHHHHHHhcc-CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecc
Confidence 378999999987 499999999999999999999999999999999999999876532 3334568999999999
Q ss_pred cccccccCceEEEEEeChHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~l~ 381 (466)
|+++++| .|+++.++++++++.
T Consensus 235 K~~gp~G---~G~l~~~~~~~~~~~ 256 (424)
T PLN02855 235 KMCGPTG---IGFLWGKSDLLESMP 256 (424)
T ss_pred cccCCCc---cEEEEEchhhhhcCC
Confidence 9766554 588888888877653
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=187.92 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHhhhCC----CcEEEeCC-HHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 210 PTTVVVEEKMSALEGA----ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~----e~~v~~~S-G~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
+.++.+.+.+.+++|. +..+++++ |++|+..++.+++.+||+|++++|.|+.....+ +..|.++..++.
T Consensus 71 ~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~----~~~g~~~~~~~~~~ 146 (386)
T PRK09082 71 ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAI----ELAGGRAVRVALQP 146 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEecCc
Confidence 4567777777777775 22455554 569999999999999999999999999865444 335666666543
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhc----c
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----L 346 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~----~ 346 (466)
.|++++++.++++ +++|++++|+||||.++ ++++|.++|+++|+++|+|++|..... ..... .
T Consensus 147 ~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~ 225 (386)
T PRK09082 147 PDFRVDWQRFAAAISPR-TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELR 225 (386)
T ss_pred ccccCCHHHHHHhcCcc-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCcc
Confidence 3789999999774 99999999999999885 578899999999999999999864322 11111 2
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lr----gL~tl~~R~e~~~~na~~La~ 422 (466)
+..+++.|+||.++.+| .+.||+++++++++.+++.........+...++.+.. .-+.+....+...++.+.+.+
T Consensus 226 ~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 304 (386)
T PRK09082 226 ERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRA 304 (386)
T ss_pred CcEEEEeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 34589999999998777 4679999999999998887654444444443332222 223344445566788888888
Q ss_pred HHHcC
Q 012321 423 ILEAH 427 (466)
Q Consensus 423 ~L~~~ 427 (466)
.|+++
T Consensus 305 ~L~~~ 309 (386)
T PRK09082 305 ALANS 309 (386)
T ss_pred HHHhC
Confidence 88874
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=192.94 Aligned_cols=217 Identities=16% Similarity=0.212 Sum_probs=159.6
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+.+|+++....|++++++++|. ++.|++++|+ +++..++.+++++| |+|++++|.|.... ..++..|+++..+
T Consensus 54 ~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v 129 (354)
T PRK04635 54 LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKAL 129 (354)
T ss_pred hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence 5677777789999999999986 4566666666 99999999999999 89999999998643 2345567777766
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCccch----hc-cCCc
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKA----LS-LGAD 349 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~-~gillIvD~t~a~~~~~~p----l~-~gaD 349 (466)
+. .|++.++ .+ + ++++|++++|+||||.+++.+++.++++. .++++|+||+|........ .. ...-
T Consensus 130 ~~~~~~~~~~~~l~-~~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~ 206 (354)
T PRK04635 130 PLTADYQLPLDYIE-QL-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNL 206 (354)
T ss_pred ecCCCCCCCHHHHH-hc-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCE
Confidence 53 3567776 34 3 48999999999999999999999999876 3799999999865432111 11 1223
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---H--HhhHHHHHHHHHHHHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---I--RGMKTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---l--rgL~tl~~R~e~~~~na~~La~~L 424 (466)
+++.|+||+++.+| .+.|++++++++++.+......++. +......+ + .+.+.+..++++..++++.+.+.|
T Consensus 207 iv~~S~SK~~~l~G-lRlG~~i~~~~~~~~l~~~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 283 (354)
T PRK04635 207 VVLRTLSKAFALAG-ARCGFTLANEELIEILMRVIAPYPV--PLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL 283 (354)
T ss_pred EEEechHHHhhhhH-HHHhhhhCCHHHHHHHHhhcCCCCC--CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998776 4579999999999888765443332 22222222 2 234556666777788889999999
Q ss_pred HcCCCc
Q 012321 425 EAHPKV 430 (466)
Q Consensus 425 ~~~p~V 430 (466)
++++.+
T Consensus 284 ~~~~~~ 289 (354)
T PRK04635 284 SMYGGA 289 (354)
T ss_pred HhCCCc
Confidence 988755
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=191.36 Aligned_cols=213 Identities=15% Similarity=0.202 Sum_probs=157.1
Q ss_pred CCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 207 YGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
++.+....|++.++++++. ++.+++++|+ +++..++.+++++||+|++++|.|+..... +...|.++..++
T Consensus 61 ~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~----~~~~g~~~~~~~~~~ 136 (359)
T PRK03158 61 YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHN----AIIEGAEVREVPLKD 136 (359)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEEecCC
Confidence 4555678899999999986 3456666665 899988889999999999999999875432 334566666654
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----chh----ccCCcE
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SLGADL 350 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~----~pl----~~gaDi 350 (466)
..|++++++++++ ++++|++++|+||||.+.+.++|.++++. +|+++|+||+|...... ..+ ..+..+
T Consensus 137 ~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi 215 (359)
T PRK03158 137 GGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLI 215 (359)
T ss_pred CCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEE
Confidence 3478999988876 48999999999999999999999998877 59999999998653321 111 224568
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++.|+||.++.+| ++.||++++++++++++..+..++ .+......+...+ +.++...+...++.+.+.+.|+++
T Consensus 216 ~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 292 (359)
T PRK03158 216 VLRTFSKAYGLAA-LRVGYGIASEELIEKLNIARPPFN--TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY 292 (359)
T ss_pred EEEechHhhcCcc-hhhehhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999777 467999999999998887665433 3444433333333 334444455566777788888876
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-20 Score=188.28 Aligned_cols=212 Identities=11% Similarity=0.133 Sum_probs=152.5
Q ss_pred hhHHHHHHHHHhhh----CC----CcEEEeCC-HHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALE----GA----ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~----e~~v~~~S-G~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+....|++.+++++ |. ++.+++++ |++|+.+++.+++++||+|++++|+|+.....+ +..|.++..+
T Consensus 57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~ 132 (378)
T PRK07682 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLV----TLAGGVPVPV 132 (378)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHH----HHcCCEEEEe
Confidence 44556666666655 32 33455555 469999999999999999999999998754433 3345554444
Q ss_pred C-------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---h-hc-
Q 012321 281 D-------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LS- 345 (466)
Q Consensus 281 d-------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---p-l~- 345 (466)
+ ..|++++++++.++ +++|++++|+||||.+++ +++|.++|+++++++|+|++|....... + ..
T Consensus 133 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 211 (378)
T PRK07682 133 ATTLENEFKVQPAQIEAAITAK-TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASI 211 (378)
T ss_pred ecCCccCCCCCHHHHHhhcCcc-cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhc
Confidence 2 34789999998774 999999999999999985 7889999999999999999987543211 1 11
Q ss_pred ---cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 012321 346 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL 418 (466)
Q Consensus 346 ---~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~ 418 (466)
....+++.|+||.|+.+| .+.||+++++++++++...........+...+..+.+.+ ..+....+++.++++
T Consensus 212 ~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 290 (378)
T PRK07682 212 KGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRN 290 (378)
T ss_pred ccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 134689999999998776 457999999999999887665443344444444333333 334555666778888
Q ss_pred HHHHHHHcC
Q 012321 419 RMAKILEAH 427 (466)
Q Consensus 419 ~La~~L~~~ 427 (466)
.+.+.|+++
T Consensus 291 ~~~~~L~~~ 299 (378)
T PRK07682 291 FFVTSFNEI 299 (378)
T ss_pred HHHHHHHHC
Confidence 899999876
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=189.73 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=153.2
Q ss_pred HHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 212 TVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
++.+.+.+.+..|. ++.+++++|+ +|+..++.+++++||+|+++.|+|...... ++..|+++..++.
T Consensus 73 r~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~ 148 (386)
T PRK07550 73 REAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMW----LDMLGIRPVYLPCDEGPG 148 (386)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEecCCCcC
Confidence 34444444444442 3566666665 899999999999999999999999876533 3456777766653
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhc---c-CC
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS---L-GA 348 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~---~-ga 348 (466)
.|+++++++++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .... . ..
T Consensus 149 ~~~~~~~l~~~~~~~-~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~ 227 (386)
T PRK07550 149 LLPDPAAAEALITPR-TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDT 227 (386)
T ss_pred CCCCHHHHHHHhccc-CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCcccc
Confidence 2688899999874 899999999999999986 788999999999999999998643211 1111 1 12
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl----~~R~e~~~~na~~La~~L 424 (466)
.+++.|+||.++.+| .+.|+++++++++++++......+.+.+...++.+...++.+ ....++..++++.+.+.|
T Consensus 228 ~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 306 (386)
T PRK07550 228 LVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVF 306 (386)
T ss_pred EEEEecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998666 468999999999998888776655555555555444444332 222345567778888999
Q ss_pred HcCCCc
Q 012321 425 EAHPKV 430 (466)
Q Consensus 425 ~~~p~V 430 (466)
++++.+
T Consensus 307 ~~~~~~ 312 (386)
T PRK07550 307 ARLPGW 312 (386)
T ss_pred HhCCCc
Confidence 886543
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=191.97 Aligned_cols=215 Identities=13% Similarity=0.146 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHhhhC-------CCcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 210 PTTVVVEEKMSALEG-------AESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g-------~e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+....|++.+|++++ .++.|++++| +++|..++.+++++||+|++++|+|+.... .+...|+++..++
T Consensus 108 ~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~----~~~~~g~~~~~~~ 183 (462)
T PLN02187 108 AGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDA----RAAYSGLEVRKFD 183 (462)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHH----HHHHcCCEEEEEe
Confidence 345667777777763 1344555555 599999999999999999999999998543 2344577766553
Q ss_pred -------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-cc
Q 012321 282 -------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SL 346 (466)
Q Consensus 282 -------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl-~~ 346 (466)
..|+++|+++++++ +++|++++|+||||.+++ +++|+++|+++|+++|+||+|....+. .++ .+
T Consensus 184 l~~~~~~~~d~~~l~~~~~~~-~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~ 262 (462)
T PLN02187 184 LLPEKEWEIDLEGIEAIADEN-TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKF 262 (462)
T ss_pred CccccCCccCHHHHHHhcCCC-cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHh
Confidence 23789999998774 899999999999999986 778899999999999999998764321 111 11
Q ss_pred C---CcEEEeccccccccccCceEEEEEe-ChH----HHHHHHHHHHHhCC--CchHHHHHHHHHhh-----HHHHHHHH
Q 012321 347 G---ADLVLHSATKFIGGHNDVLAGSISG-SGK----LVTQIRNLHHVLGG--ALNPNAAYLIIRGM-----KTLHLRVQ 411 (466)
Q Consensus 347 g---aDivv~S~sK~lgG~gdv~gG~vvg-~~e----li~~l~~~~~~~G~--~ls~~~A~l~lrgL-----~tl~~R~e 411 (466)
. .-+++.|+||.|+.+|. +.||+++ +++ +++.+...+..++. ..+.+..+.+...+ +.+....+
T Consensus 263 ~~~~~vi~l~SfSK~f~~pGl-RiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~ 341 (462)
T PLN02187 263 ASIVPVLTLAGISKGWVVPGW-KIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNK 341 (462)
T ss_pred ccCCcEEEEecchhhcCCccc-eeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 24888999999999985 5788887 333 33456555554433 22343333332222 34566667
Q ss_pred HHHHHHHHHHHHHHcCCCc
Q 012321 412 QQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V 430 (466)
...++++.+.+.|+++|.+
T Consensus 342 ~l~~~r~~l~~~L~~~~~~ 360 (462)
T PLN02187 342 ILKHNVDLVCDRLKDIPCV 360 (462)
T ss_pred HHHHHHHHHHHHHhhCCCC
Confidence 7788899999999987654
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=188.01 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHhhhCCC-cEEEe-CCHHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 209 NPTTVVVEEKMSALEGAE-STVIM-ASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e-~~v~~-~SG~aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
.+..+.+++.+++++|.+ ..+++ +++++++..++.++ +++||+|++.++.|.+.+..+...++..|+++.+++.
T Consensus 59 ~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~ 138 (397)
T TIGR01976 59 DQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVD 138 (397)
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecc
Confidence 355789999999999963 33444 55557777766665 6899999999999988765555556667888877643
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.|+++++++++++ +++|++++|+||||.+.|+++|.++||++|+++++|+++..+.. .+..++++|+++.|++
T Consensus 139 ~~~~~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~ 217 (397)
T TIGR01976 139 EATGELHPDDLASLLSPR-TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAY 217 (397)
T ss_pred ccCCCcCHHHHHHhcCCC-ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEech
Confidence 3689999999874 99999999999999999999999999999999999999764422 3344578999999999
Q ss_pred cccccccCceEEEEEeChHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQIRN 382 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~l~~ 382 (466)
|++|. ..|++++++++++.+..
T Consensus 218 K~~g~----~~G~l~~~~~~~~~l~~ 239 (397)
T TIGR01976 218 KFFGP----HMGILWGRPELLMNLPP 239 (397)
T ss_pred hhcCC----ceEEEEEcHHHHhhCCC
Confidence 99853 26889999888877653
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=181.03 Aligned_cols=254 Identities=20% Similarity=0.209 Sum_probs=182.1
Q ss_pred cCCccccCCCccCChHHHHHHHhcc--cCCCccCCCCchhHHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHhcc
Q 012321 174 TTPVVNTSAYFFKKTAELIDFKEKR--RASFEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVP 247 (466)
Q Consensus 174 ~~Pi~~sst~~~~~~~~~~~~~~~~--~~~~~Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG-~aAi~~al~all~ 247 (466)
.-|+..+. ..|+.+.++.+.+..+ .+-|.|+-..+...+++.++.++.++. ++.++++.| +-++..+++.+.+
T Consensus 27 vlPmWVAD-MDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~ 105 (388)
T COG1168 27 VLPMWVAD-MDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK 105 (388)
T ss_pred cceeeeec-ccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc
Confidence 33555443 5566665444433221 244788844455889999999998875 455666555 4999999999999
Q ss_pred CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--------CCCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHH
Q 012321 248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVK 316 (466)
Q Consensus 248 pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~ 316 (466)
+||.|++..|.|++.+..++. .|-++...+ ..|.++||+++...+++++++||||||+|++. +++
T Consensus 106 ~gd~Vvi~tPvY~PF~~~i~~----n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~ 181 (388)
T COG1168 106 PGDGVVIQTPVYPPFYNAIKL----NGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELR 181 (388)
T ss_pred CCCeeEecCCCchHHHHHHhh----cCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHH
Confidence 999999999999998766543 344443332 23899999999876689999999999999997 588
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCccc----hh---c-c--CCcEEEeccccccccccCceEEEEEeChHHHHHH-HHHHH
Q 012321 317 LVSDLCHKKGAIVCIDGTFATPLNQK----AL---S-L--GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI-RNLHH 385 (466)
Q Consensus 317 ~I~ela~~~gillIvD~t~a~~~~~~----pl---~-~--gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l-~~~~~ 385 (466)
+|.++|.+||++||.||.++..++.. +. . . ..-|++.|.||+|+-.|...+-+|+.++++.++. +++..
T Consensus 182 ~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~ 261 (388)
T COG1168 182 KIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR 261 (388)
T ss_pred HHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence 99999999999999999987643311 11 1 1 1238888999999988866666778888875554 34443
Q ss_pred HhCCCchHHH--HH-HH-HHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCcEE
Q 012321 386 VLGGALNPNA--AY-LI-IRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKR 432 (466)
Q Consensus 386 ~~G~~ls~~~--A~-l~-lrgL~tl~~R~e~~~~na~~La~~L~~~-p~V~~ 432 (466)
......+.+. |. .+ ..|-.+|+..++-...|.+.+++.|+++ |+|+.
T Consensus 262 ~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v 313 (388)
T COG1168 262 NGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV 313 (388)
T ss_pred hcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 4444444432 22 12 4577888888889999999999999986 77753
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=189.88 Aligned_cols=212 Identities=14% Similarity=0.131 Sum_probs=150.4
Q ss_pred hHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 211 TTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
....|+++++++++ .++.++++++++|+..++.+++++||+|++++|.|+..... ....|+++..++.
T Consensus 74 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~i~~ 149 (409)
T PLN02656 74 GLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELC----AAFRHLEVRYVDL 149 (409)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHH----HHHcCCEEEEEeC
Confidence 34566677766653 14455555556999999999999999999999999864322 2335776666542
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-c--
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S-- 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~----~pl-~-- 345 (466)
.|+++++++++++ +++|++++|+||||.++ ++++|+++|+++|+++|+|++|...... .++ .
T Consensus 150 ~~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 228 (409)
T PLN02656 150 LPEKGWEVDLDAVEALADQN-TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFG 228 (409)
T ss_pred CCcCCCCCCHHHHHHHhccC-ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhc
Confidence 3789999988774 89999999999999997 5788999999999999999998754321 111 1
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeC--------hHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGS--------GKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ 411 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~--------~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e 411 (466)
...-|++.|+||.|+.+| .+.||++++ +++++++.......+ ..+...++.+...+ +.+....+
T Consensus 229 ~~~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~~~~~~ 306 (409)
T PLN02656 229 SIVPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDILG-GPATFIQAAVPTILEQTDESFFKKTIN 306 (409)
T ss_pred ccCcEEEEcccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 123488999999999888 467888873 578888877655433 23343333333333 23555566
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 012321 412 QQNSTALRMAKILEAHPK 429 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~ 429 (466)
+..++++.+.+.|++++.
T Consensus 307 ~~~~~r~~~~~~L~~~~~ 324 (409)
T PLN02656 307 ILKQSSDICCDRIKEIPC 324 (409)
T ss_pred HHHHHHHHHHHHHhhCCC
Confidence 677788888899988754
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=193.87 Aligned_cols=211 Identities=17% Similarity=0.228 Sum_probs=163.4
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.+..++||+++|+++|.++++++++|+.++..++.+++++||+|+++++.|.+... .++..|+++..++..|.+++
T Consensus 145 ~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~----~~~~~Ga~v~~~~~~d~~~l 220 (489)
T PLN02483 145 TKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVN----GARGSGATIRVFQHNTPSHL 220 (489)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHH----HHHHcCCeEEEEeCCCHHHH
Confidence 67899999999999999999999999988888889999999999999999998653 34557888888887788877
Q ss_pred HHhccC------CCc-----e-EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------c--hh-cc
Q 012321 289 EAALNN------NNV-----S-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--AL-SL 346 (466)
Q Consensus 289 e~ai~~------~~t-----k-lV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-------~--pl-~~ 346 (466)
++.+++ .++ + +|+++...|++|.+.++++|.++|+++|+++++||+++.+... . .. ..
T Consensus 221 e~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~ 300 (489)
T PLN02483 221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPA 300 (489)
T ss_pred HHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcc
Confidence 776541 112 4 6677777799999999999999999999999999998643221 0 11 13
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH---------HHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---------LHLRVQQQNS 415 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~t---------l~~R~e~~~~ 415 (466)
+.||++.|+||++++. ||++++++++++.++.... .++..+++..+..++..++. ...++++..+
T Consensus 301 ~~dI~~~SfSKs~g~~----GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~ 376 (489)
T PLN02483 301 DVDIMMGTFTKSFGSC----GGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRE 376 (489)
T ss_pred cCcEEEEecchhcccC----ceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHH
Confidence 5789999999999875 5999999999999886543 23434444433333334432 2346678889
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
+++.+.+.|+++
T Consensus 377 ~~~~l~~~L~~~ 388 (489)
T PLN02483 377 NSNFFRSELQKM 388 (489)
T ss_pred HHHHHHHHHHHC
Confidence 999999999986
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=191.82 Aligned_cols=210 Identities=22% Similarity=0.252 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
+...+||++|++++|.+++++++||++|+..++..+.. +||.|+++...|...+. .+...|.++..+...|.+.
T Consensus 91 ~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~ 166 (410)
T PRK13392 91 HPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHNDLAD 166 (410)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCCCHHH
Confidence 46789999999999999999999999998888876653 89988887777766543 2344577766666566666
Q ss_pred HHHhcc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------hhccCCcEEEecc
Q 012321 288 LEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHSA 355 (466)
Q Consensus 288 Le~ai~---~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---------pl~~gaDivv~S~ 355 (466)
+++.++ ..++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.... .+....|+++.|+
T Consensus 167 l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tl 246 (410)
T PRK13392 167 LEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTL 246 (410)
T ss_pred HHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEC
Confidence 666553 2258999999999999999999999999999999999999987543211 1112468999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+|++++. ||++++++++++.+++.... ++...++..++.+ ++.++....+.+++.++++++.+.|++.
T Consensus 247 sK~~g~~----GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (410)
T PRK13392 247 AKAFGCL----GGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN 319 (410)
T ss_pred hHhhhcc----cchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999875 48999999999988876543 2344444444433 4444444455677788899999999874
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=187.56 Aligned_cols=212 Identities=24% Similarity=0.265 Sum_probs=169.8
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.+....||+.+++++|.+.+++++||++|+.+++.++ +++||+|+++.+.|..+... +...|+++.++|.
T Consensus 28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~----~~~~G~~~~~~~~~~~~~ 103 (380)
T TIGR03588 28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANC----ALYCGAKVDFVDIDPDTG 103 (380)
T ss_pred ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCEEEEEecCCCcC
Confidence 5778999999999999999999999999999999998 89999999999999886533 3456888887764
Q ss_pred -CCHHHHHHhcc----CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCC----cEEEe
Q 012321 283 -ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA----DLVLH 353 (466)
Q Consensus 283 -~D~e~Le~ai~----~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~ga----Divv~ 353 (466)
.|+++++++++ + +|++|++ +|++|...|+++|.++|+++|++||+|++++.+...+....|. |+++.
T Consensus 104 ~~d~~~l~~~i~~~~~~-~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~ 179 (380)
T TIGR03588 104 NIDEDALEKKLAAAKGK-LPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVF 179 (380)
T ss_pred CcCHHHHHHHhhcccCC-CceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEE
Confidence 37899999998 4 4899885 5678999999999999999999999999988764333333344 99999
Q ss_pred ccc--cccccccCceEEEEEe-ChHHHHHHHHHHHH-----------------------h--CCCchHHHHHHHHHhhHH
Q 012321 354 SAT--KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV-----------------------L--GGALNPNAAYLIIRGMKT 405 (466)
Q Consensus 354 S~s--K~lgG~gdv~gG~vvg-~~eli~~l~~~~~~-----------------------~--G~~ls~~~A~l~lrgL~t 405 (466)
|++ |+++.+ .||+++. ++++.++++..+.. . +..++.+.+.+.+..|+.
T Consensus 180 S~~~~K~~~~~---~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~ 256 (380)
T TIGR03588 180 SFHPVKIITTA---EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKK 256 (380)
T ss_pred ecCCCCccccc---CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHH
Confidence 987 889764 3677766 46777777654320 1 123456677777778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 406 LHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 406 l~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
++.++++.+++++++.+.|.+.|.+.
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999987653
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=189.80 Aligned_cols=219 Identities=15% Similarity=0.210 Sum_probs=154.3
Q ss_pred CCCchhHHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHhccCCC-EEEEcCCCccchHHHHHhhcccCC
Q 012321 206 RYGNPTTVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--------~-e~~v~~~SG~-aAi~~al~all~pGD-~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
+|+++....|++.|+++++ . ++.|++++|+ +++..++.+++.+|| +|++++|+|..... .++..|
T Consensus 62 ~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~----~~~~~g 137 (374)
T PRK02610 62 RYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGI----LAQTLG 137 (374)
T ss_pred CCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHH----HHHHcC
Confidence 4445566788899998876 2 3456677776 888888888888886 89999999987553 345567
Q ss_pred cEEEEeC------CCCHHHHHHhccC---CCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCccch-
Q 012321 275 ITATVID------PADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKA- 343 (466)
Q Consensus 275 i~v~~vd------~~D~e~Le~ai~~---~~tklV~lesPsNPtG~v~dl~~I~ela~~-~gillIvD~t~a~~~~~~p- 343 (466)
+++..++ ..|+++|++++++ .++++|++++|+||||.+++.+++.++++- +++++|+||+|........
T Consensus 138 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~ 217 (374)
T PRK02610 138 IPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLV 217 (374)
T ss_pred CEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchH
Confidence 7776654 3478999988864 359999999999999999987766666532 4899999999875422111
Q ss_pred --hc-cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHH---HHHHhhHHHHHHHHHHHHHH
Q 012321 344 --LS-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY---LIIRGMKTLHLRVQQQNSTA 417 (466)
Q Consensus 344 --l~-~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~---l~lrgL~tl~~R~e~~~~na 417 (466)
+. ...-|++.|+||.++.+| ++.||+++++++++++.+.+..++ .+.+... .++...+.+..++++..+.+
T Consensus 218 ~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r 294 (374)
T PRK02610 218 GELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALEHRQELLAAIPEILQER 294 (374)
T ss_pred HHHhcCCCEEEEEecchhccCcc-cceeeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11 112488999999999888 568999999999999887664333 3333333 33333334444555556667
Q ss_pred HHHHHHHHcCCCcE
Q 012321 418 LRMAKILEAHPKVK 431 (466)
Q Consensus 418 ~~La~~L~~~p~V~ 431 (466)
..+.+.|++++.+.
T Consensus 295 ~~l~~~L~~~~~~~ 308 (374)
T PRK02610 295 DRLYQALQELPQLR 308 (374)
T ss_pred HHHHHHHHhCCCcE
Confidence 77888888876653
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=193.91 Aligned_cols=213 Identities=15% Similarity=0.200 Sum_probs=155.7
Q ss_pred CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
+|+++....|++.|+++++. .+.|++++|+ +++..++.+++++||+|++++|+|..... .+...|+++..++.
T Consensus 60 ~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~----~~~~~g~~v~~v~~~ 135 (366)
T PRK01533 60 LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRH----HAIIEGCEVKEVALN 135 (366)
T ss_pred cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHH----HHHHcCCEEEEeecC
Confidence 35556677899999999986 4567777776 89999999999999999999999987553 34456777776643
Q ss_pred ---CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHH---hcCCEEEEeCCCCCCCcc----chh----ccCC
Q 012321 283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH---KKGAIVCIDGTFATPLNQ----KAL----SLGA 348 (466)
Q Consensus 283 ---~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~---~~gillIvD~t~a~~~~~----~pl----~~ga 348 (466)
.|+++|+++++++ +++|++++|+||||.+++.+++.++++ +++ ++|+||+|...... ..+ ..+.
T Consensus 136 ~~~~d~~~l~~~~~~~-~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T PRK01533 136 NGVYDLDEISSVVDND-TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKN 213 (366)
T ss_pred CCCcCHHHHHHHhCcC-CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCC
Confidence 4799999998764 899999999999999998766666554 444 67889998643211 111 1234
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~ 425 (466)
.|++.|+||.++.+|. +.||+++++++++++++.+.. ...+.+....+...+ +.+....+...++++++.+.|+
T Consensus 214 vi~~~SfSK~~~l~Gl-RiG~~i~~~~~~~~l~~~~~~--~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~ 290 (366)
T PRK01533 214 ILVLRTFSKAYGLASF-RVGYAVGHEELIEKLNVVRLP--FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCK 290 (366)
T ss_pred EEEEeCchHHhcChHH-HHhHHhCCHHHHHHHHHhcCC--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999998884 578999999999998876533 345555544444443 3344444555667777888887
Q ss_pred cC
Q 012321 426 AH 427 (466)
Q Consensus 426 ~~ 427 (466)
.+
T Consensus 291 ~~ 292 (366)
T PRK01533 291 EN 292 (366)
T ss_pred hC
Confidence 65
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=189.69 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=148.8
Q ss_pred HHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--
Q 012321 213 VVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-- 281 (466)
Q Consensus 213 ~~Lee~lA~l~----g~---e~~v~~~SG~-aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-- 281 (466)
..|++.+++++ |. ++.|++++|. +++..++.+++ ++||+|++++|+|+.....+ ...|.++..++
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~----~~~g~~~v~v~~~ 185 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATI----SLLGGTLVPYYLE 185 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHH----HHcCCEEEEEecc
Confidence 34555555543 53 3456666665 89999999888 79999999999999866443 34455555442
Q ss_pred -----CCCHHHHHHhccC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ch
Q 012321 282 -----PADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA 343 (466)
Q Consensus 282 -----~~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~p 343 (466)
..|+++|++++++ .++|+|++++|+||||.+++ +++|+++|+++|+++|+||+|...... .+
T Consensus 186 ~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s 265 (407)
T PLN02368 186 ESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFIS 265 (407)
T ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccc
Confidence 3578999998863 14899999999999999986 567888899999999999998664321 11
Q ss_pred -h----c-------cCCcEEEecccccc-ccccCceEEEEE---eChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---
Q 012321 344 -L----S-------LGADLVLHSATKFI-GGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--- 404 (466)
Q Consensus 344 -l----~-------~gaDivv~S~sK~l-gG~gdv~gG~vv---g~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~--- 404 (466)
. . .+.-|+++|+||.| +.+|+ +.||++ +++++++++.+.... ..+.+.+..+.+...++
T Consensus 266 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~Gl-RiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~aa~~~l~~~~ 343 (407)
T PLN02368 266 AKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ-RGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIFMGLMVNPPK 343 (407)
T ss_pred HHHHHhhhcccccccceEEEEecCCcccccCCcc-ceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHHHHHHhCCCC
Confidence 1 1 11348889999998 67775 578887 488899988876432 22333333333333222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 405 -----------TLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 405 -----------tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
.+...++...++++.+.+.|+++|++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~ 382 (407)
T PLN02368 344 PGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC 382 (407)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEe
Confidence 1233456778888999999999887643
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=186.37 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=151.2
Q ss_pred HHHHHHHHHhhh----C----C--CcEEEeCCHH-HHHHHHHHHhccCCCE--EEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 212 TVVVEEKMSALE----G----A--ESTVIMASGM-SASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 212 ~~~Lee~lA~l~----g----~--e~~v~~~SG~-aAi~~al~all~pGD~--VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
...|++++++++ | . ++.+++++|+ +++..++.+++++||+ |++++|+|...... +...|+++.
T Consensus 66 ~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~----~~~~g~~~~ 141 (393)
T TIGR03538 66 LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGA----ALLAGAEPY 141 (393)
T ss_pred CHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHH----HHhcCCeEE
Confidence 345666666654 3 2 2457777776 9999999999999986 99999999875533 344566666
Q ss_pred EeCC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---ch--
Q 012321 279 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---KA-- 343 (466)
Q Consensus 279 ~vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~---~p-- 343 (466)
.++. .|++++++++.+ ++|+|++++|+||||.+++ +++|+++|++++++||+||+|...... .+
T Consensus 142 ~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~ 220 (393)
T TIGR03538 142 FLNCTAENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAG 220 (393)
T ss_pred EeeccccCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcC
Confidence 6542 367889888866 4899999999999999997 678888899999999999998754321 11
Q ss_pred -h----ccC-----CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHH
Q 012321 344 -L----SLG-----ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRV 410 (466)
Q Consensus 344 -l----~~g-----aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~ 410 (466)
. ..+ .-|++.|+||.++.+| .+.||+++++++++++.+.....+...+...++.+...+ +.+....
T Consensus 221 ~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 299 (393)
T TIGR03538 221 LLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENR 299 (393)
T ss_pred HHHhcccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHH
Confidence 1 112 2389999999988887 467999999999999887776555555554444433333 2344455
Q ss_pred HHHHHHHHHHHHHHHcC
Q 012321 411 QQQNSTALRMAKILEAH 427 (466)
Q Consensus 411 e~~~~na~~La~~L~~~ 427 (466)
+...++...+.+.|+++
T Consensus 300 ~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 300 ALYREKFAAVLEILGQV 316 (393)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56677777788888764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=185.78 Aligned_cols=218 Identities=17% Similarity=0.168 Sum_probs=164.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
|.+.+...+.++++++++++++|.+..+++++|++++..++.+++++||.|++.++.|+.....+ ...|+++..++
T Consensus 70 ~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~----~~~g~~~~~~~ 145 (385)
T TIGR01825 70 VRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGL----RLTKATKKIYK 145 (385)
T ss_pred cCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHH----HhcCCceEEeC
Confidence 44445556789999999999999888999999999988888899999999999999998764332 23466666677
Q ss_pred CCCHHHHHHhccCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------chhccCCc
Q 012321 282 PADMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGAD 349 (466)
Q Consensus 282 ~~D~e~Le~ai~~~---~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---------~pl~~gaD 349 (466)
..|++++++.+.+. ++++|+++++.||+|.+.|+++|.++|++||+++|+|++|..+... .....+.|
T Consensus 146 ~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (385)
T TIGR01825 146 HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVD 225 (385)
T ss_pred CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCc
Confidence 77888888877531 4899999999999999999999999999999999999998654321 11234578
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L 424 (466)
+++.|+||++++. +|++++++++++.+..... .++....+...+.+...++.+ ....++..++++.+.+.|
T Consensus 226 i~~~s~sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L 301 (385)
T TIGR01825 226 IQVGTLSKAIGVV----GGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGL 301 (385)
T ss_pred EEEEeccHHhhcC----CCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999764 4899999999988876532 223333444333333344332 234566677888888888
Q ss_pred HcC
Q 012321 425 EAH 427 (466)
Q Consensus 425 ~~~ 427 (466)
++.
T Consensus 302 ~~~ 304 (385)
T TIGR01825 302 GKL 304 (385)
T ss_pred HHc
Confidence 774
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=188.38 Aligned_cols=218 Identities=15% Similarity=0.189 Sum_probs=152.0
Q ss_pred CCCch-hHHHHHHHHHhhhC------------C-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhc
Q 012321 206 RYGNP-TTVVVEEKMSALEG------------A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270 (466)
Q Consensus 206 R~~~p-~~~~Lee~lA~l~g------------~-e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l 270 (466)
+|+++ ....|++.++++++ . ++.+++++| ++++..++.+++++||+|+++.|+|..... .+
T Consensus 70 ~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~----~~ 145 (412)
T PTZ00433 70 GYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYET----VC 145 (412)
T ss_pred CCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHH----HH
Confidence 34444 35678888887764 1 344555555 599999999999999999999999988553 34
Q ss_pred ccCCcEEEEeC-------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012321 271 PKMGITATVID-------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN 340 (466)
Q Consensus 271 ~~~gi~v~~vd-------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~ 340 (466)
+..|+++..++ ..|+++|+++++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|.....
T Consensus 146 ~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~-~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 224 (412)
T PTZ00433 146 KAYGIEMRFYNCRPEKDWEADLDEIRRLVDDR-TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVF 224 (412)
T ss_pred HHcCCEEEEEecCccccCcCCHHHHHHHhccC-ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccccc
Confidence 45677766654 34689999988774 999999999999999875 67789999999999999999875432
Q ss_pred cc----h-hcc---CCcEEEeccccccccccCceEEEEEe------ChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---
Q 012321 341 QK----A-LSL---GADLVLHSATKFIGGHNDVLAGSISG------SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--- 403 (466)
Q Consensus 341 ~~----p-l~~---gaDivv~S~sK~lgG~gdv~gG~vvg------~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL--- 403 (466)
.. + ..+ ..-+++.|+||.++.+| .+.||+++ .+++++.++...... ...+...+..+...+
T Consensus 225 ~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRlG~~i~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~q~a~~~~l~~~ 302 (412)
T PTZ00433 225 NGATFTSVADFDTTVPRVILGGTAKNLVVPG-WRLGWLLLVDPHGNGGDFLDGMKRLGMLV-CGPCSVVQAALGEALLNT 302 (412)
T ss_pred CCCCccchhhccCCCceEEEccchhhcCCCC-eeEEEEEEeCCcccHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHhcC
Confidence 11 1 111 12378899999998887 46788886 245777776654322 233444333322222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012321 404 --KTLHLRVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 404 --~tl~~R~e~~~~na~~La~~L~~~p~V 430 (466)
+.+....++..++.+.+.+.|+++..+
T Consensus 303 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 331 (412)
T PTZ00433 303 PQEHLEQIVAKLEEGAMVLYNHIGECIGL 331 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334555566778888899999876443
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=184.42 Aligned_cols=219 Identities=16% Similarity=0.195 Sum_probs=153.5
Q ss_pred CCCCch-hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 205 GRYGNP-TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 205 ~R~~~p-~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
..|+.+ ...+|++++++++|. ++.++++++++++..++.+++.+||+|++++|.|..... .++..|.++..++
T Consensus 60 ~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~ 135 (380)
T PRK06225 60 CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDN----FASRFGAEVIEVP 135 (380)
T ss_pred CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHHhCceEEeec
Confidence 344444 368899999999986 456666777799999999999999999999999986443 3344566665553
Q ss_pred C--------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----hhcc
Q 012321 282 P--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALSL 346 (466)
Q Consensus 282 ~--------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----pl~~ 346 (466)
. .|++++++.++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|....... ....
T Consensus 136 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~ 214 (380)
T PRK06225 136 IYSEECNYKLTPELVKENMDEN-TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAP 214 (380)
T ss_pred cccccCCccCCHHHHHhhcCCC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCC
Confidence 1 4789999999875 999999999999999875 8899999999999999999974321111 1112
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHH-HHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRV-QQQNSTALRMAK 422 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~---tl~~R~-e~~~~na~~La~ 422 (466)
...+++.|+||+++.+| .+.|+++++++++++++..... ....+...+..+...++ .+..++ +..+++...+.+
T Consensus 215 ~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~ 292 (380)
T PRK06225 215 EHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKE 292 (380)
T ss_pred CCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34588999999997666 5689999999999888765431 12223333333222222 222222 233455666778
Q ss_pred HHHcCCCc
Q 012321 423 ILEAHPKV 430 (466)
Q Consensus 423 ~L~~~p~V 430 (466)
.|++++.+
T Consensus 293 ~L~~~~~~ 300 (380)
T PRK06225 293 AVDEIEGV 300 (380)
T ss_pred HHHhCcCC
Confidence 88876553
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=185.68 Aligned_cols=205 Identities=19% Similarity=0.239 Sum_probs=147.0
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
|+++. ..|++.|++.+|.++ |++++|+ ++|.+++ .+.+||+|++++|+|+.... .++..|+++..++.
T Consensus 47 yp~~~-~~Lr~~ia~~~~~~~-I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~----~~~~~g~~~~~v~~--- 115 (330)
T PRK05664 47 LPETD-DGLEAAARAYYGAPQ-LLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHAH----AWRRAGHQVRELDE--- 115 (330)
T ss_pred CCCCh-HHHHHHHHHHhCCCC-EEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHHH----HHHHcCCeEEEech---
Confidence 44444 799999999999865 5555555 8888775 45799999999999998653 44567888887764
Q ss_pred HHHHHhccCCCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCccch---hc-cCCcEEEeccccc
Q 012321 286 EGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQKA---LS-LGADLVLHSATKF 358 (466)
Q Consensus 286 e~Le~ai~~~~tklV~lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~~~p---l~-~gaDivv~S~sK~ 358 (466)
++++++++ +++++++++|+||||.+++. ++|+++|+++|+++|+||+|.......+ +. ...-+++.|+||.
T Consensus 116 ~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~ 193 (330)
T PRK05664 116 AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKF 193 (330)
T ss_pred hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecccc
Confidence 45666664 37899999999999999975 5566667889999999999865432111 11 1223899999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++.+| .+.||+++++++++.+......++ .+....+.+...| .......++..++++.+.+.|+++
T Consensus 194 ~gl~G-lRiG~~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 194 FGLAG-ARLGFVLAEPALLRALAELLGPWT--VSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred ccCCC-cceEEEEeCHHHHHHHHHhcCCCC--CCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99887 467999999999999887654332 2333333333333 334444566677888899999886
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=182.45 Aligned_cols=216 Identities=17% Similarity=0.224 Sum_probs=154.9
Q ss_pred CCC-CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC-CcEEEEeC-
Q 012321 205 GRY-GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM-GITATVID- 281 (466)
Q Consensus 205 ~R~-~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~-gi~v~~vd- 281 (466)
.+| ++|...+|++.|++++|.+..+++++|++++...+.+++.+||+|+++.+.|...+... ..... ++++..++
T Consensus 28 ~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 105 (333)
T PRK10534 28 DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAG--GAAVLGSIQPQPIDA 105 (333)
T ss_pred cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCC--chHHhcCceEEeecC
Confidence 455 78999999999999999988899999999998888888999999999887775322110 01111 24444442
Q ss_pred ----CCCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCC------ccch
Q 012321 282 ----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPL------NQKA 343 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~---~I~ela~~~gillIvD~t~a~~~------~~~p 343 (466)
..|+++|+++++++ ++++|++++|+| |.+.+.+ +|.++|+++|++|++||+|.... ....
T Consensus 106 ~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~--G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~ 183 (333)
T PRK10534 106 AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN--GKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE 183 (333)
T ss_pred CCCCCCCHHHHHHhhcccCcCcccceEEEEecCCC--CeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence 23799999998652 489999998774 9998765 55678899999999999865210 0111
Q ss_pred hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCch--HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012321 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 344 l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls--~~~A~l~lrgL~tl~~R~e~~~~na~~La 421 (466)
.....|.++.|+||.++.. +||++++++++++++++++..++..++ ...+..+...++....++++..++++++.
T Consensus 184 ~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~ 260 (333)
T PRK10534 184 ITQYCDSFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLA 260 (333)
T ss_pred HHhcCCEEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1223576677999988864 466889999999999988876664433 23344444455554566677777888999
Q ss_pred HHHHcC
Q 012321 422 KILEAH 427 (466)
Q Consensus 422 ~~L~~~ 427 (466)
+.|+++
T Consensus 261 ~~L~~~ 266 (333)
T PRK10534 261 EQLREA 266 (333)
T ss_pred HHHHhC
Confidence 999986
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=189.39 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=153.3
Q ss_pred CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
+|+.+...+|++.+++.+|. ++.|++++|+ +++..++.+++++||+|++++|.|+.... .++..|+++..++.
T Consensus 74 ~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~----~~~~~g~~~~~v~~~ 149 (370)
T PRK09105 74 RYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWR----AADAQGAPVAKVPLR 149 (370)
T ss_pred CCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHH----HHHHcCCeEEEecCC
Confidence 45555688999999999985 4455555555 99999999999999999999999988653 34456777766642
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc-chh---ccCC-cEE
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ-KAL---SLGA-DLV 351 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~-~pl---~~ga-Div 351 (466)
.|++++++. .+ ++++|++++|+||||.+.+.++|.++++. +++++|+||+|...... ... ..+. -++
T Consensus 150 ~~~~~d~~~l~~~-~~-~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~ 227 (370)
T PRK09105 150 ADGAHDVKAMLAA-DP-NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIV 227 (370)
T ss_pred CCCCCCHHHHHhc-CC-CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEE
Confidence 467888876 34 48999999999999999998888887754 48999999998532211 111 1222 378
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.|+||.+|.+|. +.||++++++++++++.. . ....+......+ +...+.+..+.++..++++.+.+.|+++
T Consensus 228 ~~SfSK~~g~~Gl-RiG~~v~~~~~i~~l~~~-~--~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 302 (370)
T PRK09105 228 LRTFSKLYGMAGM-RLGLAAARPDLLAKLARF-G--HNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK 302 (370)
T ss_pred EecccHhhcCCcc-ceeeeecCHHHHHHHHhc-C--CCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999998884 579999999999888765 1 122333322222 3333445555667778888899999875
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=186.54 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=160.2
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.+.++++++.+++++|.++.+++++|++++..++.+++++||+|+++++.|+.....+ ...+.++..++..|++++
T Consensus 86 ~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~l 161 (397)
T PRK06939 86 QDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADL 161 (397)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHH----HhcCCceEEeCCCCHHHH
Confidence 4678899999999999888999999999999999999999999999999998865433 233555555666788888
Q ss_pred HHhccC---C--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc----h-----hccCCcEEEec
Q 012321 289 EAALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK----A-----LSLGADLVLHS 354 (466)
Q Consensus 289 e~ai~~---~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~----p-----l~~gaDivv~S 354 (466)
++.+++ . ++++|++++..|++|.+.++++|.++|+++|+++|+|++|..+.... . +..+.|+++.|
T Consensus 162 ~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S 241 (397)
T PRK06939 162 EAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGT 241 (397)
T ss_pred HHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEE
Confidence 888753 1 48899988889999999999999999999999999999996433211 1 11246899999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
+||+++|+ ++||+++++++++.++.... .++....+..++.+...++.+ ..+.++..++++.+.+.|+++
T Consensus 242 ~sK~~~g~---r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 316 (397)
T PRK06939 242 LGKALGGA---SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA 316 (397)
T ss_pred CHHHhCcc---CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999654 47999999999988876432 123333343333333333333 345566778888888888875
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=194.44 Aligned_cols=213 Identities=13% Similarity=0.157 Sum_probs=144.2
Q ss_pred HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~------g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...|++.|++++ +. ++.|++++|+ +++.+++.+++++||+|++++|.|...... +...|.++..++.
T Consensus 187 ~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~----~~~~g~~~v~~~~~ 262 (517)
T PRK13355 187 LFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTAC----VNLAGGTAVHYRCD 262 (517)
T ss_pred hHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHH----HHHCCCEEEEeecC
Confidence 667777777776 22 3456666665 899999999999999999999999875533 3345666555431
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhccCC
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSLGA 348 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~~ga 348 (466)
.|+++++++++++ +++|++++|+||||.+++ +++|+++|++|+++||+||+|...... ....+..
T Consensus 263 ~~~~~~~d~~~l~~~~~~~-~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~ 341 (517)
T PRK13355 263 EQSEWYPDIDDIRSKITSR-TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP 341 (517)
T ss_pred cccCCCCCHHHHHHhcCcC-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC
Confidence 4789999999874 999999999999999997 788999999999999999998753321 1122222
Q ss_pred c---EEEeccccccccccCceEEEEE--eChHH----HHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHH---HHHHH
Q 012321 349 D---LVLHSATKFIGGHNDVLAGSIS--GSGKL----VTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHL---RVQQQ 413 (466)
Q Consensus 349 D---ivv~S~sK~lgG~gdv~gG~vv--g~~el----i~~l~~~~~~~G~~ls~~~A~l~lrgL~---tl~~---R~e~~ 413 (466)
| +++.|+||.++.+|+. .||++ +++++ ++.+..... ...+.+....+++...|+ .+.. ..++.
T Consensus 342 ~~~vi~~~S~SK~~~~~G~R-iG~~i~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~ 419 (517)
T PRK13355 342 DLFCVTFSGLSKSHMIAGYR-IGWMILSGNKRIAKDYIEGLNMLAN-MRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRV 419 (517)
T ss_pred CCeEEEEecchhhccCcccc-eEEEEeeCchhhHHHHHHHHHHHhc-CcCCcChHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 2 4469999999988854 67877 44544 333332222 222233333333333322 1111 22345
Q ss_pred HHHHHHHHHHHHcCCCcE
Q 012321 414 NSTALRMAKILEAHPKVK 431 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V~ 431 (466)
.++++.+.+.|++.|++.
T Consensus 420 ~~~r~~l~~~L~~~~g~~ 437 (517)
T PRK13355 420 YEQRELVYNALNAIPGIS 437 (517)
T ss_pred HHHHHHHHHHHhcCCCcc
Confidence 566788899998876653
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=182.46 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=168.7
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.+|...++|+.+++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...+ ...|+++.+++.
T Consensus 16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~ 91 (352)
T cd00616 16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAI----LLLGATPVFVDIDPDT 91 (352)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHH----HHcCCeEEEEecCCCc
Confidence 46889999999999999999999999999999999988 689999999999998865433 345777777642
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--hhccCCcEEEeccc--
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSAT-- 356 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~--pl~~gaDivv~S~s-- 356 (466)
.|++++++.+++ ++++|+++ |++|.+.|+++|.++|+++|+++|+|++++.+.... +.....|+.+.|++
T Consensus 92 ~~~d~~~l~~~i~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 167 (352)
T cd00616 92 YNIDPELIEAAITP-RTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT 167 (352)
T ss_pred CCcCHHHHHHhcCc-CCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence 368999999976 49999985 568999999999999999999999999987654322 22223588999976
Q ss_pred cccccccCceEEEEEeC-hHHHHHHHHHHHH---------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~---------------~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~L 420 (466)
|+++++ .||+++.+ ++++++++.+... +...+++..+.+.+..++.++.+.++..++++++
T Consensus 168 K~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~ 244 (352)
T cd00616 168 KNLTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERY 244 (352)
T ss_pred CCCccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999644 36777765 5787777654321 1123566777777778888888889999999999
Q ss_pred HHHHHcCCCcE
Q 012321 421 AKILEAHPKVK 431 (466)
Q Consensus 421 a~~L~~~p~V~ 431 (466)
.+.|++.|+++
T Consensus 245 ~~~L~~~~g~~ 255 (352)
T cd00616 245 KELLADLPGIR 255 (352)
T ss_pred HHHhcCCCCcc
Confidence 99999988764
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=189.72 Aligned_cols=213 Identities=14% Similarity=0.214 Sum_probs=155.1
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEe-CCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIM-ASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~-~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.+|+++...+|++.+++++|. ++.+++ ++|+ +++..++.+++++||+|++++|.|..... .++..|+++..++
T Consensus 64 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~----~~~~~g~~~~~~~ 139 (361)
T PRK00950 64 HRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEI----SAKAHGAKPVYAK 139 (361)
T ss_pred cCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCEEEEee
Confidence 345556679999999999986 334444 7887 77888888888999999999999876432 3445677776664
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--chh--ccCCcEEE
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KAL--SLGADLVL 352 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~--~pl--~~gaDivv 352 (466)
..|++++++.+++ ++++|++++|+||||.+.+.++|.++|+++|+++|+|++|...... .++ .....+++
T Consensus 140 ~~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~ 218 (361)
T PRK00950 140 REEDFSLDVDSVLNAITE-KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIG 218 (361)
T ss_pred cCCCCCcCHHHHHHHhcc-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEE
Confidence 3478999998876 4899999999999999999999999999999999999998643311 111 12234888
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~ 425 (466)
.|+||.++.+| .+.||+++++++++.+++....++ .+....+.+...+ +.++...++..++++.+.+.|.
T Consensus 219 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~ 291 (361)
T PRK00950 219 RTFSKVFGLAG-LRIGYGFVPEWLIDYYMRAKTPFS--LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP 291 (361)
T ss_pred EeehHhhcCch-hhcchhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999777 467999999999988887665443 3344333333333 3344444455556666666664
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-19 Score=184.11 Aligned_cols=210 Identities=16% Similarity=0.190 Sum_probs=148.0
Q ss_pred HHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 212 TVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 212 ~~~Lee~lA~l----~g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
...|++.++++ +|. + +.+++++|++|+.+++.+++.+||+|++..|.|+.....+ ...|.++..++
T Consensus 63 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~----~~~g~~~~~~~~ 138 (387)
T PRK07777 63 IPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVI----AMAGAHRVPVPL 138 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHCCCEEEEeec
Confidence 45566666554 553 2 3555555569999999999999999999999998755333 33455544432
Q ss_pred --C-----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh---
Q 012321 282 --P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL--- 344 (466)
Q Consensus 282 --~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl--- 344 (466)
. .|++++++.++++ +++|++++|+||||.+++ +++|.++|+++++++|+|++|...... .++
T Consensus 139 ~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 217 (387)
T PRK07777 139 VPDGRGFALDLDALRAAVTPR-TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATL 217 (387)
T ss_pred CCccCCCcCCHHHHHHhcCcc-cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhC
Confidence 1 5789999988764 999999999999999975 788999999999999999998643211 111
Q ss_pred --ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHH---HHHHHHH-hhHHHHHHHHHHHHHHH
Q 012321 345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN---AAYLIIR-GMKTLHLRVQQQNSTAL 418 (466)
Q Consensus 345 --~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~---~A~l~lr-gL~tl~~R~e~~~~na~ 418 (466)
..+.++++.|+||.|+.+| .+.|++++++++++.++..........+.. .+..++. +.+.+....+...++++
T Consensus 218 ~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (387)
T PRK07777 218 PGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRD 296 (387)
T ss_pred CCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 1246799999999998776 467899999999988887665333222221 1222222 23344445566778888
Q ss_pred HHHHHHHcC
Q 012321 419 RMAKILEAH 427 (466)
Q Consensus 419 ~La~~L~~~ 427 (466)
.+.+.|+++
T Consensus 297 ~l~~~L~~~ 305 (387)
T PRK07777 297 RLAAGLAEA 305 (387)
T ss_pred HHHHHHHhC
Confidence 898999875
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=181.48 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. + +.++++++++|+.+++.+++.+||+|++++|+|++.... ++..|+++..++.
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~ 144 (391)
T PRK07309 69 LLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPI----VNLVGAEIVEIDT 144 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHH----HHHcCCEEEEEec
Confidence 456666666654 32 2 344455556999999999999999999999999986543 3345777666642
Q ss_pred ------CCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch-hcc
Q 012321 283 ------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LSL 346 (466)
Q Consensus 283 ------~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p-l~~ 346 (466)
.|++++++++++ .++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .+ ...
T Consensus 145 ~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 224 (391)
T PRK07309 145 TENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY 224 (391)
T ss_pred CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh
Confidence 478999988864 24899999999999999886 788899999999999999998754321 11 111
Q ss_pred --CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 012321 347 --GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM 420 (466)
Q Consensus 347 --gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t----l~~R~e~~~~na~~L 420 (466)
...+++.|+||.++.+| .+.||++++++++++++..........+......+...++. .....+++.++++.+
T Consensus 225 ~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T PRK07309 225 LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYI 303 (391)
T ss_pred ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Confidence 23489999999998776 56899999999999988765433333344433333333332 222334556677788
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 304 ~~~l~~~ 310 (391)
T PRK07309 304 IEKMTDL 310 (391)
T ss_pred HHHHHHC
Confidence 8888875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=186.92 Aligned_cols=215 Identities=15% Similarity=0.125 Sum_probs=149.5
Q ss_pred chhHHHHHHHHHhhhC-----C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 209 NPTTVVVEEKMSALEG-----A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g-----~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.+....|++.++++++ . ++.++++++++++.+++.+++++||+|++++|+|.... ..++..|+++..++
T Consensus 72 ~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~~ 147 (401)
T TIGR01264 72 TVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLYN 147 (401)
T ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEee
Confidence 3445678888888775 1 34455555559999999999999999999999998754 33455677766653
Q ss_pred -------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-cc
Q 012321 282 -------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SL 346 (466)
Q Consensus 282 -------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl-~~ 346 (466)
..|++.+++.++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .++ .+
T Consensus 148 ~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 226 (401)
T TIGR01264 148 LLPDKSWEIDLKQLESLIDEK-TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASL 226 (401)
T ss_pred cCCccCCCCCHHHHHHHhccC-ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHc
Confidence 24789999988764 899999999999999985 778899999999999999998753321 111 11
Q ss_pred ---CCcEEEeccccccccccCceEEEEEeCh------HHHHHHHHHHHHhCCCchHHHHHHHHHh-----hHHHHHHHHH
Q 012321 347 ---GADLVLHSATKFIGGHNDVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIRG-----MKTLHLRVQQ 412 (466)
Q Consensus 347 ---gaDivv~S~sK~lgG~gdv~gG~vvg~~------eli~~l~~~~~~~G~~ls~~~A~l~lrg-----L~tl~~R~e~ 412 (466)
..-|++.|+||.++.+| .+.||+++++ ++++.++..... ....+......+... -+.+....++
T Consensus 227 ~~~~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~ 304 (401)
T TIGR01264 227 SSTVPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVKLSQR-ILGPCTIVQGALPSILLRTPQEYFDGTLSV 304 (401)
T ss_pred CCCCcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 11378999999998887 4678888763 344444444321 112222222222222 2345555667
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 012321 413 QNSTALRMAKILEAHPKV 430 (466)
Q Consensus 413 ~~~na~~La~~L~~~p~V 430 (466)
..++++.+.+.|+++|++
T Consensus 305 ~~~~r~~l~~~L~~~~~~ 322 (401)
T TIGR01264 305 LESNAMLCYGALAAVPGL 322 (401)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 778888899999988654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=189.36 Aligned_cols=215 Identities=18% Similarity=0.247 Sum_probs=159.1
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+.+....|++.++++++. ++.+++++|+ +++..++..++++||+|+++.|.|..... .++..|+++..++.
T Consensus 52 ~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~----~~~~~g~~~~~v~~ 127 (352)
T PRK03321 52 NRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI----LVQVAGATPVQVPL 127 (352)
T ss_pred CcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHH----HHHHcCCEEEEccC
Confidence 334556789999999999986 3467777887 77788888889999999999999876432 23446777766653
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----chh---c-cC
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL---S-LG 347 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~----~pl---~-~g 347 (466)
.|++++++++++ ++++|++++|+||||.+.+.++|.++|++ +++++|+|++|...... .++ . ..
T Consensus 128 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 206 (352)
T PRK03321 128 TPDHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHP 206 (352)
T ss_pred CCCCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCC
Confidence 378999999977 49999999999999999999999999987 59999999998643321 111 1 12
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L 424 (466)
.-+++.|+||.++.+| ++.|++++++++++.+++... ....+....+.+ +...+.+..++++..++...+.+.|
T Consensus 207 ~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L 283 (352)
T PRK03321 207 NVVVLRTFSKAYGLAG-LRVGYAVGHPEVIAALRKVAV--PFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL 283 (352)
T ss_pred CEEEEecchHHhhhHH-HhhhhhcCCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999998766 568999999999999887543 233344443333 3333455556666667777788888
Q ss_pred HcC
Q 012321 425 EAH 427 (466)
Q Consensus 425 ~~~ 427 (466)
++.
T Consensus 284 ~~~ 286 (352)
T PRK03321 284 RAA 286 (352)
T ss_pred HHC
Confidence 875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=188.69 Aligned_cols=215 Identities=16% Similarity=0.261 Sum_probs=155.0
Q ss_pred CCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 207 YGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
|+.+....|+++|+++++. ++.|++++|. +++..++..++++||.|++++|+|+.....+ ...|.++..++
T Consensus 64 Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~~~~~vp~~~ 139 (369)
T PRK08153 64 YGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHV----AGFGGRLVTVPYRD 139 (369)
T ss_pred CCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHH----HHcCCeEEEeeCCC
Confidence 4445578999999999986 4567777777 8888888888999999999999998755333 23455555443
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc---chhc--cCCcEEEe
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ---KALS--LGADLVLH 353 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~---~pl~--~gaDivv~ 353 (466)
..|++++++.+...++++|++++|+||||.+.+.+++.++++. ++++||+||+|...... .++. ....+++.
T Consensus 140 ~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~ 219 (369)
T PRK08153 140 DREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMR 219 (369)
T ss_pred CCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEe
Confidence 3468888777654458999999999999999998877777654 38999999998653321 1111 12348899
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
|+||.++.+| ++.||+++++++++.+.+....++ .++..++.+...+ +.+....+...++++.+.+.|++++
T Consensus 220 SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g 294 (369)
T PRK08153 220 TFSKAYGLAG-ARVGYAIGAPGTIKAFDKVRNHFG--MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANG 294 (369)
T ss_pred cchHhccCcc-hheeeeecCHHHHHHHHHhhcCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999777 467999999999998887665443 4455444443333 3344445556677778888887653
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=189.02 Aligned_cols=218 Identities=17% Similarity=0.160 Sum_probs=159.3
Q ss_pred cCCCCchhHHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 204 YGRYGNPTTVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~----g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
+.+|+++....|++.+++++ |. .+.|++++|+ +++..++.+++++||.|+++.|+|...... ....|+
T Consensus 59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~----~~~~g~ 134 (368)
T PRK03317 59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPII----ARGTHT 134 (368)
T ss_pred hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHhcCC
Confidence 34455556678888888887 32 4567777776 899999999999999999999999875533 334566
Q ss_pred EEEEeC-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---chh---
Q 012321 276 TATVID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KAL--- 344 (466)
Q Consensus 276 ~v~~vd-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---~pl--- 344 (466)
++..++ ..|+++++++++++++++|++++|+||||.+.+.+++.++++..++++|+||+|...... ...
T Consensus 135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~ 214 (368)
T PRK03317 135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL 214 (368)
T ss_pred eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence 655443 347899999987545899999999999999999999999999999999999998743211 111
Q ss_pred c-cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Q 012321 345 S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 345 ~-~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg---L~tl~~R~e~~~~na~~L 420 (466)
. ....+++.|+||.++.+| ++.|++++++++++.++..+..+ ..++..+..+... .+.+..++++..++.+.+
T Consensus 215 ~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~--~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 291 (368)
T PRK03317 215 PEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRLVRLPY--HLSAVTQAAARAALRHADELLASVAALRAERDRV 291 (368)
T ss_pred HhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 1 122478899999999776 46799999999999888655333 3444444433333 344445556667778888
Q ss_pred HHHHHcCC
Q 012321 421 AKILEAHP 428 (466)
Q Consensus 421 a~~L~~~p 428 (466)
.+.|+++.
T Consensus 292 ~~~L~~~g 299 (368)
T PRK03317 292 VAWLRELG 299 (368)
T ss_pred HHHHHHCC
Confidence 88898763
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=184.71 Aligned_cols=213 Identities=17% Similarity=0.214 Sum_probs=154.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 203 EYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.+.+|+.+....|+++++++++. ++.|++++|+ +++..++..+ +||+|+++.|.|+... ...+..|+++..+
T Consensus 48 ~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v 121 (337)
T PRK03967 48 PFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYS----FYAKLNGIPVIDV 121 (337)
T ss_pred ccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence 35666666788999999999985 4566677776 8887776655 7999999999998533 2334567777666
Q ss_pred C-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch---hc-cCCcEE
Q 012321 281 D-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---LS-LGADLV 351 (466)
Q Consensus 281 d-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p---l~-~gaDiv 351 (466)
+ ..|++.+++.+. ++++|++++|+||||.+.+.++|.++++ +++++|+|++|........ .. ...-++
T Consensus 122 ~~~~~~~~d~~~l~~~~~--~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~ 198 (337)
T PRK03967 122 PLKEDFTIDGERIAEKAK--NASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLIL 198 (337)
T ss_pred ecCCCCCcCHHHHHHhcc--CCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEE
Confidence 4 246788887653 3889999999999999999999999995 7999999999875322111 11 123488
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l---rgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.|+||.++.+| ++.||+++++++++++++....++ .+......+. ...+.+..++++..+++..+.+.|.++
T Consensus 199 l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 274 (337)
T PRK03967 199 LRTFSKAFGLAG-IRAGYAIANEEIIDALYRIKPPFS--LNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY 274 (337)
T ss_pred EecchHhhcchh-hhheeeecCHHHHHHHHhhcCCCC--CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999777 568999999999998887664433 3344333333 333445555666677788888888764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=183.54 Aligned_cols=210 Identities=18% Similarity=0.216 Sum_probs=149.6
Q ss_pred HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
..+|++.+++++ |. + +.++++++++++.+++.+++++||+|++++|+|+.... .++..|+++..++
T Consensus 65 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~ 140 (387)
T PRK08912 65 LPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLP----LIRRAGGVPRLVRL 140 (387)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH----HHHHcCCEEEEEec
Confidence 346666666553 42 3 34444455699999999999999999999999987553 3455677766553
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh-c---
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S--- 345 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl-~--- 345 (466)
..|++++++.+.++ +++|++++|+||||.+.+ +++|.++|+++++++|+|++|...... .++ .
T Consensus 141 ~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 219 (387)
T PRK08912 141 EPPHWRLPRAALAAAFSPR-TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG 219 (387)
T ss_pred CcccCcCCHHHHHHHhCcc-ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC
Confidence 23689999988764 899999999999999987 667899999999999999998543211 111 1
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg----L~tl~~R~e~~~~na~~L 420 (466)
.+.++++.|+||.++.+| .+.|++++++++++.+.......+...++.....+... .+.+....++..++++.+
T Consensus 220 ~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (387)
T PRK08912 220 MRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRL 298 (387)
T ss_pred ccCceEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 235799999999998777 46799999999999888766554333333222222222 233444456677788888
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 299 ~~~L~~~ 305 (387)
T PRK08912 299 AAGLRRI 305 (387)
T ss_pred HHHHHhC
Confidence 8999876
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=185.55 Aligned_cols=215 Identities=15% Similarity=0.136 Sum_probs=151.5
Q ss_pred hhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 210 PTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--------e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.....+++.++++++. ++.+++++|++|+..++.+++.+||+|+++.|.|..... .+...|+++..++
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~ 148 (403)
T TIGR01265 73 VGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDT----RAAFSGLEVRLYD 148 (403)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH----HHHHcCCEEEEec
Confidence 4456778888887762 345566666799999999999999999999999986443 3345677766653
Q ss_pred C-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----h-hcc
Q 012321 282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-LSL 346 (466)
Q Consensus 282 ~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----p-l~~ 346 (466)
. .|+++++++++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|....... + ..+
T Consensus 149 ~~~~~~~~~d~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 227 (403)
T TIGR01265 149 LLPEKDWEIDLDGLEALADEK-TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASF 227 (403)
T ss_pred CCcccCCccCHHHHHHHhCcC-ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhh
Confidence 2 4789999988764 899999999999999986 7889999999999999999987543211 1 111
Q ss_pred C---CcEEEeccccccccccCceEEEEEeC-h-H-----HHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012321 347 G---ADLVLHSATKFIGGHNDVLAGSISGS-G-K-----LVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ 411 (466)
Q Consensus 347 g---aDivv~S~sK~lgG~gdv~gG~vvg~-~-e-----li~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e 411 (466)
. .-|++.|+||.++.+| .+.||+++. + + +++.+...... ....+.+.+..+...+ +.+....+
T Consensus 228 ~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 305 (403)
T TIGR01265 228 ASIVPVLSLGGISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENTPQEFFDGKIS 305 (403)
T ss_pred ccCCcEEEEeecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhChHHHHHHHHH
Confidence 1 2378899999998887 457888763 2 3 33444443321 1223344333332222 34555667
Q ss_pred HHHHHHHHHHHHHHcCCCcE
Q 012321 412 QQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~ 431 (466)
+..+++..+.+.|+.+|++.
T Consensus 306 ~~~~~~~~l~~~L~~~~~~~ 325 (403)
T TIGR01265 306 VLKSNAELCYEELKDIPGLV 325 (403)
T ss_pred HHHHHHHHHHHHHhcCCCce
Confidence 77888899999999887664
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-20 Score=188.39 Aligned_cols=216 Identities=13% Similarity=0.207 Sum_probs=158.1
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++....|++.++++++. .+.|++++|+ +++..++.+++++||+|++++|.|..... .....|+++..++
T Consensus 61 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~~~ 136 (367)
T PRK02731 61 LHRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPI----AAQAVGAKPVEVP 136 (367)
T ss_pred hcCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHH----HHHHcCCeEEEec
Confidence 3455555667999999999987 3567777776 77888888889999999999999965432 2344677777665
Q ss_pred ----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCcc-------chhcc-C
Q 012321 282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-------KALSL-G 347 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~~-------~pl~~-g 347 (466)
..|++++++.+++ ++++|++++|+||||.+++.++|.++++.. |+++|+|++|...... ..... .
T Consensus 137 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 215 (367)
T PRK02731 137 AKDYGHDLDAMLAAVTP-RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFP 215 (367)
T ss_pred ccCCCCCHHHHHHHhCC-CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcC
Confidence 3478999999976 489999999999999999999999998874 8999999997643321 11111 2
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L 424 (466)
..+++.|+||.++.+| .+.||++++++++++++.....++ .+....+.+...+ +.++...+...++.+.+.+.|
T Consensus 216 ~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L 292 (367)
T PRK02731 216 NVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRVRQPFN--VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL 292 (367)
T ss_pred CEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHccCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999998666 467999999999998887654333 2344444443333 334444455566777788888
Q ss_pred HcC
Q 012321 425 EAH 427 (466)
Q Consensus 425 ~~~ 427 (466)
+++
T Consensus 293 ~~~ 295 (367)
T PRK02731 293 AEL 295 (367)
T ss_pred HHC
Confidence 876
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-19 Score=182.11 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=165.0
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.+.++++|+.++++.|.+.+++++||++|+.+++.++ +++||+||++.++|..+...+ ...|+++.++|.
T Consensus 30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~----~~~G~~~v~vd~d~~~~ 105 (376)
T TIGR02379 30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTM 105 (376)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcC
Confidence 5789999999999999999999999999999998887 899999999999999876443 345788877763
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--cchhccCCcEEEeccc--c
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSAT--K 357 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~--~~pl~~gaDivv~S~s--K 357 (466)
.|+++++++++++ |++|+ |+||+|...|+++|.++|+++|+++|+|++++.+.. .++...-.|+.++|++ |
T Consensus 106 ~~d~~~le~~i~~~-tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K 181 (376)
T TIGR02379 106 NIDETLIESAITHR-TKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETK 181 (376)
T ss_pred CCCHHHHHHhcCcC-ceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCC
Confidence 3788999999874 99986 688899999999999999999999999999876532 2233222478888875 5
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHH-------------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV-------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNS 415 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~-------------------~G--~~ls~~~A~l~lrgL~tl~~R~e~~~~ 415 (466)
.+...+ .||+++.+ +++.++++.++.. .| ..++.+.|.+++..|+.++..+++.++
T Consensus 182 ~l~~g~--~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~ 259 (376)
T TIGR02379 182 NYTSGG--EGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLA 259 (376)
T ss_pred cCcccC--CceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 554332 36776654 7888888866541 11 124556677778889999999999999
Q ss_pred HHHHHHHHHHcCC
Q 012321 416 TALRMAKILEAHP 428 (466)
Q Consensus 416 na~~La~~L~~~p 428 (466)
+++...+.|.+.+
T Consensus 260 ~~~~y~~~L~~~~ 272 (376)
T TIGR02379 260 TWQLYQDALKPLE 272 (376)
T ss_pred HHHHHHHHhccCC
Confidence 9999999987765
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-19 Score=181.82 Aligned_cols=212 Identities=13% Similarity=0.175 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+....|++.+++++ |. + +.++++++++|+.+++.+++++||+|++++|+|......+ ...|+++.++
T Consensus 65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~ 140 (387)
T PRK07683 65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPII----RLCGAKPVFI 140 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHH----HHcCCEEEEe
Confidence 34566777777665 32 3 3444444569999999999999999999999999865443 3457777776
Q ss_pred CCC------CHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---h-hcc-
Q 012321 281 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LSL- 346 (466)
Q Consensus 281 d~~------D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---p-l~~- 346 (466)
+.. |.+++++.++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|....... + ..+
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~-~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 219 (387)
T PRK07683 141 DTRSTGFRLTAEALENAITEK-TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFP 219 (387)
T ss_pred ecCcccCCCCHHHHHHhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhcc
Confidence 532 568899988764 899999999999999976 7888999999999999999987543211 1 111
Q ss_pred ---CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012321 347 ---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR 419 (466)
Q Consensus 347 ---gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~ 419 (466)
+..+++.|+||.++.+| ++.||+++++++++++...........+...+..+...+ ..+....+++.+++..
T Consensus 220 ~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (387)
T PRK07683 220 EMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDY 298 (387)
T ss_pred CCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 24589999999999776 568999999999999887654333333333333332222 3344444556677888
Q ss_pred HHHHHHcC
Q 012321 420 MAKILEAH 427 (466)
Q Consensus 420 La~~L~~~ 427 (466)
+.+.|+++
T Consensus 299 ~~~~l~~~ 306 (387)
T PRK07683 299 VYNRLISM 306 (387)
T ss_pred HHHHHHHc
Confidence 88888764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=185.17 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=155.2
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+++....|++.++++++. ++.|++++|+ +++.+++.+++++||+|++++|.|+..... .+..|+++..++.
T Consensus 55 ~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~----~~~~g~~~~~v~~ 130 (353)
T PRK05387 55 RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVY----AGLYGIPYEEIPL 130 (353)
T ss_pred hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHH----HHHcCCEEEEeec
Confidence 345555668999999999986 3445555555 999999999999999999999999664432 3445777666542
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc-CCEEEEeCCCCCCCccch--h--ccCCcEEE
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKA--L--SLGADLVL 352 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~-gillIvD~t~a~~~~~~p--l--~~gaDivv 352 (466)
.|++++++ ++++|++++|+||||.+.+.+++.++++.+ ++++|+|++|........ + .....+++
T Consensus 131 ~~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~ 205 (353)
T PRK05387 131 DDDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVV 205 (353)
T ss_pred CCCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEE
Confidence 36676652 257899999999999999999999999875 999999999864321111 1 12346999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhC-CCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G-~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
.|+||.++.+| ++.|+++++++++++++......+ .+.+....+.+...+ +.++...++..++++.+.+.|++++
T Consensus 206 ~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g 284 (353)
T PRK05387 206 QTFSKSRSLAG-LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALG 284 (353)
T ss_pred EehhHhhcchh-hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999998776 357999999999999887765432 234444444333333 3455556667788888999998863
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=184.31 Aligned_cols=216 Identities=18% Similarity=0.229 Sum_probs=158.3
Q ss_pred CCCCchh-HHHHHHHHHhhhC--------CCcEEEeCCHH-HHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccC
Q 012321 205 GRYGNPT-TVVVEEKMSALEG--------AESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 205 ~R~~~p~-~~~Lee~lA~l~g--------~e~~v~~~SG~-aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
..|+.+. ...|++.++++++ .+..+++++|+ +++..++..+ ..+||.|++++|+|+.....+ +..
T Consensus 38 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~----~~~ 113 (363)
T PF00155_consen 38 LGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAA----RLL 113 (363)
T ss_dssp TSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHH----HHT
T ss_pred ccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCccccccccc----ccc
Confidence 3444444 7899999999887 34378888888 6666666666 679999999999999876544 345
Q ss_pred CcEEEEeC-------CCCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCC
Q 012321 274 GITATVID-------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATP 338 (466)
Q Consensus 274 gi~v~~vd-------~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~---~I~ela~~~gillIvD~t~a~~ 338 (466)
|+++..++ ..|+++|++.+++. ++++|++++|+||||.+++.+ +|+++|+++|+++|+|++|...
T Consensus 114 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~ 193 (363)
T PF00155_consen 114 GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDL 193 (363)
T ss_dssp TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTG
T ss_pred Cceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecc
Confidence 66666665 45899999988762 378999999999999998654 5555599999999999998765
Q ss_pred Cccch--------hccCC-cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH-----HHhh-
Q 012321 339 LNQKA--------LSLGA-DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI-----IRGM- 403 (466)
Q Consensus 339 ~~~~p--------l~~ga-Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~-----lrgL- 403 (466)
..... ...+. .+++.|+||.++.+|. +.|++++++++++.++........ +...+.++ ....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 270 (363)
T PF00155_consen 194 IFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGL-RVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPELV 270 (363)
T ss_dssp BSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGG-TEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccCcccccccccccceeeeecccccccccc-ccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhccccc
Confidence 44321 12233 4999999999988874 578998899999999988776554 22222221 1121
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 404 -KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 404 -~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.+..+.++..++++.+.+.|+++
T Consensus 271 ~~~~~~~~~~l~~~~~~l~~~L~~~ 295 (363)
T PF00155_consen 271 EKWLEELRERLRENRDLLREALEEI 295 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHHHHh
Confidence 266777888889999999999887
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=184.65 Aligned_cols=249 Identities=16% Similarity=0.186 Sum_probs=182.6
Q ss_pred cccCCCccCChH-----HHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCC-C-cEEEeCCHHHHHHHHHHHh--c--
Q 012321 178 VNTSAYFFKKTA-----ELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGA-E-STVIMASGMSASTVMLLAL--V-- 246 (466)
Q Consensus 178 ~~sst~~~~~~~-----~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~-e-~~v~~~SG~aAi~~al~al--l-- 246 (466)
|.+||...+..- .+...|+++.+-|.|+|......+..|+.+|++.|+ + +.+++++|++++++++... .
T Consensus 7 ~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~ 86 (386)
T COG1104 7 NAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYR 86 (386)
T ss_pred ccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhh
Confidence 345555555442 123356788888999999999999999999999997 3 4445555569999888863 2
Q ss_pred --cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHH
Q 012321 247 --PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319 (466)
Q Consensus 247 --~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ 319 (466)
+.|.|||++.-.|+.....+..+ +..|++|++++.+ |+++|+++|+++ |.+|.+...||.+|.++|+++|.
T Consensus 87 ~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~-T~LVSim~aNnE~G~IQpI~ei~ 164 (386)
T COG1104 87 NAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPD-TILVSIMHANNETGTIQPIAEIG 164 (386)
T ss_pred cccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCC-ceEEEEEecccCeeecccHHHHH
Confidence 25789999999999988877665 7779999998754 899999999986 99999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCCCCC-CccchhccCCcEEEeccccccccccCceEEEEEeChHH-HHHH-HHHHH---HhCCC--c
Q 012321 320 DLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQI-RNLHH---VLGGA--L 391 (466)
Q Consensus 320 ela~~~gillIvD~t~a~~-~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el-i~~l-~~~~~---~~G~~--l 391 (466)
++|+++|+++++|.+++.+ +..+...+++|++..|.||+.|+.| .|+++.++.. +..+ ..-.+ .-.++ +
T Consensus 165 ~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv 241 (386)
T COG1104 165 EICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENV 241 (386)
T ss_pred HHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccH
Confidence 9999999999999998875 4455666689999999999988876 4666655432 1111 10000 00111 1
Q ss_pred hHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCcE
Q 012321 392 NPNA--AYLIIRGMKTLHLRVQQQNSTALRMAKILEAH-PKVK 431 (466)
Q Consensus 392 s~~~--A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~-p~V~ 431 (466)
.... +..+....+.++...++....+++|.+.|.+. |.+.
T Consensus 242 ~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~ 284 (386)
T COG1104 242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVY 284 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 1111 12223355667777778888888899988875 5543
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-19 Score=180.66 Aligned_cols=216 Identities=21% Similarity=0.196 Sum_probs=163.0
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
+.++..+..+.++++++++++.++.+++++|++++..++..++++||+|++.++.|+.+... +...|.++..++..
T Consensus 78 ~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~----~~~~g~~~~~~~~~ 153 (385)
T PRK05958 78 LVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDG----ARLSRARVRRYPHN 153 (385)
T ss_pred cccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHH----HHhcCCceEEeCCC
Confidence 33445678999999999999988899999999888888888899999999999999876543 33457777777777
Q ss_pred CHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---c------hhc-cCCcEE
Q 012321 284 DMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---K------ALS-LGADLV 351 (466)
Q Consensus 284 D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---~------pl~-~gaDiv 351 (466)
|++++++.+++. ++++|+++++.|++|.+.++++|.++|+++|+++|+|++|+.+... . .+. ...+++
T Consensus 154 d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~ 233 (385)
T PRK05958 154 DVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVIL 233 (385)
T ss_pred CHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEE
Confidence 899999988652 3678888899999999999999999999999999999998654321 0 111 223488
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHc
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~ 426 (466)
+.|++|++++. ||++++++++++.++.... ..+...++..+..+...++.+ ..+.++..++++++.+.|++
T Consensus 234 ~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (385)
T PRK05958 234 VGTLGKALGSS----GAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRA 309 (385)
T ss_pred EEechhhcccC----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 4888899888887754322 122334444444343444433 34567778888899999987
Q ss_pred C
Q 012321 427 H 427 (466)
Q Consensus 427 ~ 427 (466)
.
T Consensus 310 ~ 310 (385)
T PRK05958 310 L 310 (385)
T ss_pred c
Confidence 5
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=182.29 Aligned_cols=215 Identities=15% Similarity=0.188 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~---e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
+.++++.+.+++..|. ++.+++++| ++|+..++.+++++||+|++++|+|......+. ..+.....++
T Consensus 74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~----~~~~~~~~v~~~~~ 149 (402)
T PRK06107 74 ALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVL----ANDGTPVIVACPEE 149 (402)
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHH----HcCCEEEEecCCcc
Confidence 4566777777766664 344556665 599999999999999999999998887554332 1233332232
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhc-CCEEEEeCCCCCCCcc-----chhcc---
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK-GAIVCIDGTFATPLNQ-----KALSL--- 346 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~-gillIvD~t~a~~~~~-----~pl~~--- 346 (466)
..|++++++.+++ ++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|....+. .....
T Consensus 150 ~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~ 228 (402)
T PRK06107 150 QGFKLTPEALEAAITP-RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE 228 (402)
T ss_pred cCCCCCHHHHHhhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC
Confidence 1467899998876 4899999999999999986 56778889998 9999999998642211 11111
Q ss_pred --CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHH
Q 012321 347 --GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRM 420 (466)
Q Consensus 347 --gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~L 420 (466)
+..+++.|+||.|+.+| .+.||++++++++++++......+...+....+++...+ +.+....++..++++.+
T Consensus 229 ~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (402)
T PRK06107 229 LRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYA 307 (402)
T ss_pred ccCCEEEEeccchhhcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 23588999999998777 468999999999999988877655555555554444333 34555566778888889
Q ss_pred HHHHHcCCCc
Q 012321 421 AKILEAHPKV 430 (466)
Q Consensus 421 a~~L~~~p~V 430 (466)
.+.|++++.+
T Consensus 308 ~~~L~~~~g~ 317 (402)
T PRK06107 308 LALLNAIPGL 317 (402)
T ss_pred HHHHhcCCCC
Confidence 9999887543
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=180.97 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=150.0
Q ss_pred chhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 209 NPTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.+....|++.+++++ |. ++.++++++++|+.+++.+++++||+|++++|+|......+ ...|..+..+
T Consensus 69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~v~~ 144 (398)
T PRK08363 69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLV----KFYGGVPVEY 144 (398)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCEEEEe
Confidence 344667777777775 31 34444555569999999999999999999999999866443 3345444333
Q ss_pred -C------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----hhcc
Q 012321 281 -D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALSL 346 (466)
Q Consensus 281 -d------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----pl~~ 346 (466)
+ ..|+++++++++++ +++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....... ...+
T Consensus 145 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~ 223 (398)
T PRK08363 145 RTIEEEGWQPDIDDIRKKITEK-TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSL 223 (398)
T ss_pred ccccccCCcCCHHHHHhhCCcc-eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHc
Confidence 1 14688999988764 899999999999999987 8889999999999999999986532211 1111
Q ss_pred ---CCcEEEeccccccccccCceEEEEEe--ChHHHHHHHHHHHHh---CCCchHHHHHH---HHHh-hHHHHHHHHHHH
Q 012321 347 ---GADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNLHHVL---GGALNPNAAYL---IIRG-MKTLHLRVQQQN 414 (466)
Q Consensus 347 ---gaDivv~S~sK~lgG~gdv~gG~vvg--~~eli~~l~~~~~~~---G~~ls~~~A~l---~lrg-L~tl~~R~e~~~ 414 (466)
..-+++.|+||.++.+| .+.||+++ ++++++.++...... ....+...... ++.. .+.+....++..
T Consensus 224 ~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~ 302 (398)
T PRK08363 224 TKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLK 302 (398)
T ss_pred CcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 12477899999998887 45788886 677777766543321 11223333222 2322 344555566777
Q ss_pred HHHHHHHHHHHcCCCcE
Q 012321 415 STALRMAKILEAHPKVK 431 (466)
Q Consensus 415 ~na~~La~~L~~~p~V~ 431 (466)
++...+.+.|+++|.+.
T Consensus 303 ~~~~~l~~~L~~~~~~~ 319 (398)
T PRK08363 303 ERRDYIYKRLNEIPGIS 319 (398)
T ss_pred HHHHHHHHHHhcCCCCE
Confidence 88888999998886643
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-19 Score=184.09 Aligned_cols=211 Identities=12% Similarity=0.096 Sum_probs=143.8
Q ss_pred HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...|++.+++++ |. ++.|++++|+ +++.+++.+++.+||+|++++|+|+..... +...|+++..++.
T Consensus 76 ~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~----~~~~g~~~~~~~~~ 151 (409)
T PLN00143 76 ILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETY----AIFHHLEIRHFDLL 151 (409)
T ss_pred CHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHH----HHHcCCEEEEEecc
Confidence 445666666665 32 3445555555 999999999999999999999999886533 3345666655532
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chhc-c--
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS-L-- 346 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl~-~-- 346 (466)
.|+++|+++++++ ++++++++|+||||.+++ +++|+++|+++++++|+|++|...... .++. .
T Consensus 152 ~~~~~~~d~~~l~~~~~~~-~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 230 (409)
T PLN00143 152 PEKGWEVDLDAVEAIADEN-TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFAS 230 (409)
T ss_pred CCCCCcCCHHHHHHhcccC-CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcc
Confidence 3789999988764 899999999999999997 677888899999999999998754321 1111 1
Q ss_pred -CCcEEEeccccccccccCceEEEEEe-Ch-HHH------HHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHH
Q 012321 347 -GADLVLHSATKFIGGHNDVLAGSISG-SG-KLV------TQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQ 412 (466)
Q Consensus 347 -gaDivv~S~sK~lgG~gdv~gG~vvg-~~-eli------~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e~ 412 (466)
..-|++.|+||.++.+|. +.||+++ ++ .++ +.++..... ....+......+...+ ..++..+++
T Consensus 231 ~~~vi~~~SfSK~f~~pGl-RvG~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 308 (409)
T PLN00143 231 IVPVITLGSISKRWMIPGW-GLGWLVTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTINI 308 (409)
T ss_pred cCcEEEEccchhhcCCCcc-ceEEEEeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHH
Confidence 123899999999999884 5788887 33 343 333333221 1111223323222222 356666777
Q ss_pred HHHHHHHHHHHHHcCCC
Q 012321 413 QNSTALRMAKILEAHPK 429 (466)
Q Consensus 413 ~~~na~~La~~L~~~p~ 429 (466)
..++.+.+.+.|++++.
T Consensus 309 ~~~~~~~~~~~L~~~~~ 325 (409)
T PLN00143 309 LRAALAFCYDKLKEIPC 325 (409)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 77888888888887653
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=180.75 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=150.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.+--.++....+++|+.+|+++|+++++++++|+ +++..++.+++++||+|++++++|.+....+. ..|+++.++
T Consensus 51 ~d~l~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~----~~g~~~~~v 126 (294)
T cd00615 51 LDDLLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV----LSGAVPVYL 126 (294)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH----HCCCEEEEe
Confidence 3333345667899999999999998888766665 89999999999999999999999988765442 346666555
Q ss_pred C-----------CCCHHHHHHhccC-CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC------ccc
Q 012321 281 D-----------PADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQK 342 (466)
Q Consensus 281 d-----------~~D~e~Le~ai~~-~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~------~~~ 342 (466)
+ ..|++++++++++ .++++|++++| |++|.+.|+++|.++||++|+++++|++++..+ ...
T Consensus 127 ~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~ 205 (294)
T cd00615 127 KPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSS 205 (294)
T ss_pred cCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcc
Confidence 3 2478999999864 24899999999 699999999999999999999999999987532 123
Q ss_pred hhccCCcEEEeccccccccccCceEEEEEeChHH--HHHHHHHHHHhCCCchHHHH-HHHHHhhHH----HHHHHHHHHH
Q 012321 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--VTQIRNLHHVLGGALNPNAA-YLIIRGMKT----LHLRVQQQNS 415 (466)
Q Consensus 343 pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el--i~~l~~~~~~~G~~ls~~~A-~l~lrgL~t----l~~R~e~~~~ 415 (466)
....|+|+++.|+||+++|+. .+|++..+.+. .+++......+..+...... ..+...++. -..++++..+
T Consensus 206 ~~~~~~div~~S~hK~l~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~ 283 (294)
T cd00615 206 AAMAGADIVVQSTHKTLPALT--QGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIE 283 (294)
T ss_pred hhhcCCcEEEEchhcccchHh--HHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345689999999999998764 35666554432 23444433333322221111 111111111 2334566666
Q ss_pred HHHHHHHHHH
Q 012321 416 TALRMAKILE 425 (466)
Q Consensus 416 na~~La~~L~ 425 (466)
+++.+.++|+
T Consensus 284 ~~~~~r~~l~ 293 (294)
T cd00615 284 LALYARQEIN 293 (294)
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=184.29 Aligned_cols=215 Identities=17% Similarity=0.175 Sum_probs=150.2
Q ss_pred CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
+|+.+....|++.++++++. ++.+++++|+ +++..++.++ .+|| +++..|.|..... .++..|+++..++..
T Consensus 51 ~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~----~~~~~g~~~~~v~~~ 124 (356)
T PRK08056 51 RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRR----ALQQVGCEIRRYSLR 124 (356)
T ss_pred cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHH----HHHHcCCeEEEEecc
Confidence 34555578999999999986 3456666665 8888888775 6776 6777888876443 345567777666421
Q ss_pred -----CH-HHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----hh-ccCC
Q 012321 284 -----DM-EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL-SLGA 348 (466)
Q Consensus 284 -----D~-e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~-----pl-~~ga 348 (466)
++ +++++.+++ ++++|++++|+||||.+.+ +++|+++|+++++++|+|++|....... .+ ....
T Consensus 125 ~~~~~~~~~~~~~~~~~-~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 203 (356)
T PRK08056 125 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPH 203 (356)
T ss_pred cccCCCccHHHHHhccC-CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCC
Confidence 22 355566665 4999999999999999998 7789999999999999999986543221 11 2245
Q ss_pred cEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L 424 (466)
++++.|+||+++.+|. +.||+++ ++++++.+++.... ...+.+.++.+...+ ..+....++..++++.+.+.|
T Consensus 204 ~i~~~S~SK~~~~~G~-RiG~~v~~~~~~~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L 280 (356)
T PRK08056 204 LWVLRSLTKFYAIPGL-RLGYLVNSDDAAVARMRRQQMP--WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL 280 (356)
T ss_pred EEEEEechhhccCcch-hheeeecCCHHHHHHHHHhCCC--CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998874 5788887 56777777654322 233444444333222 334444566778888899999
Q ss_pred HcCCCc
Q 012321 425 EAHPKV 430 (466)
Q Consensus 425 ~~~p~V 430 (466)
++++.+
T Consensus 281 ~~~~~~ 286 (356)
T PRK08056 281 CALPLL 286 (356)
T ss_pred hcCCCc
Confidence 888765
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-19 Score=184.13 Aligned_cols=210 Identities=14% Similarity=0.125 Sum_probs=146.5
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. ++.|++++|+ +++..++.+++.+||+|++++|+|......+ ...|+++..++.
T Consensus 70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~g~~v~~v~~ 145 (405)
T PRK09148 70 IPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGF----IMAGGVIRSVPA 145 (405)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHH----HhcCCEEEEEeC
Confidence 445666666554 42 3256666665 9999999999999999999999999865333 345777766643
Q ss_pred C----CHHHHHHhc---cCCCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc-----chhcc-
Q 012321 283 A----DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSL- 346 (466)
Q Consensus 283 ~----D~e~Le~ai---~~~~tklV~lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~~-----~pl~~- 346 (466)
. +++++++.+ .+ ++++|++++|+||||.+++. ++|.++|+++|+++|+|++|...... .....
T Consensus 146 ~~~~~~~~~l~~~~~~~~~-~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~ 224 (405)
T PRK09148 146 EPDEEFFPALERAVRHSIP-KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVP 224 (405)
T ss_pred CCCCCCccCHHHHHhhccc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCC
Confidence 1 234444444 34 48999999999999999985 67888999999999999998653211 11111
Q ss_pred ---CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012321 347 ---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR 419 (466)
Q Consensus 347 ---gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~ 419 (466)
+..+++.|+||.++.+| .+.||+++++++++.+++.+.....+.+......+...+ +.++...+++.+++..
T Consensus 225 ~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~ 303 (405)
T PRK09148 225 GAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDV 303 (405)
T ss_pred CccCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 23467899999999887 568999999999999988776544333333333222222 3344455667778888
Q ss_pred HHHHHHcC
Q 012321 420 MAKILEAH 427 (466)
Q Consensus 420 La~~L~~~ 427 (466)
+.+.|+++
T Consensus 304 l~~~L~~~ 311 (405)
T PRK09148 304 LVESFGRA 311 (405)
T ss_pred HHHHHHHc
Confidence 88888875
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=184.53 Aligned_cols=212 Identities=23% Similarity=0.243 Sum_probs=158.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
.++...+||+++++++|.+.+++++||++|+..++..+.. +|+.|+.....|...... +...|+++..++..|.
T Consensus 88 ~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~ 163 (402)
T TIGR01821 88 TNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRHNDV 163 (402)
T ss_pred CcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECCCCH
Confidence 3678899999999999999999999999999998887765 677777665556544322 2345667666666788
Q ss_pred HHHHHhcc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------hhccCCcEEEe
Q 012321 286 EGLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLH 353 (466)
Q Consensus 286 e~Le~ai~---~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---------pl~~gaDivv~ 353 (466)
+++++.++ +.++++|++|+|+||+|.+.|+++|.++|+++|+++|+|++++.+.... .+....|+++.
T Consensus 164 ~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~ 243 (402)
T TIGR01821 164 AHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEG 243 (402)
T ss_pred HHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEE
Confidence 88887775 2248999999999999999999999999999999999999987443211 11123689999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
+++|.+++. ||++++++++++.++..... +....++..+..++..++.+ ..+.+++.++++++.+.|+++
T Consensus 244 t~sKa~g~~----GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (402)
T TIGR01821 244 TLAKAFGVV----GGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL 318 (402)
T ss_pred echhhhccC----CceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999975 48999999999888754432 23345665555544444443 334556668888999999875
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-19 Score=187.76 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=145.7
Q ss_pred HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~---e~~v~~~SG~-aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
...|++.+++++ |. ++.|++++|+ +++..++.+++ ++||+|++++|.|+.....+ +..|.++..++
T Consensus 117 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~----~~~g~~~v~v~~ 192 (481)
T PTZ00377 117 YPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAI----TLLGGKQVPYYL 192 (481)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHH----HHcCCEEEEEEe
Confidence 445666666554 32 3456566665 99999999998 79999999999999865443 33455554442
Q ss_pred ------CCCHHHHHHhccC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----c
Q 012321 282 ------PADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K 342 (466)
Q Consensus 282 ------~~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~ 342 (466)
..|+++|++++++ .++|+|++++|+||||.+++ +++|+++|+++|+++|+||+|....+. .
T Consensus 193 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~ 272 (481)
T PTZ00377 193 DEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFI 272 (481)
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcc
Confidence 2478999998864 14899999999999999997 788999999999999999998653221 0
Q ss_pred hh-----ccC-------CcEEEecccccc-ccccCceEEEEEe---ChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---
Q 012321 343 AL-----SLG-------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--- 403 (466)
Q Consensus 343 pl-----~~g-------aDivv~S~sK~l-gG~gdv~gG~vvg---~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL--- 403 (466)
++ .+. .-|+++|+||.+ +.+|+ +.||+++ ++++++++.+.+... .+.+....+++...+
T Consensus 273 s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~Gl-RiG~~~~~~~p~~li~~l~~~~~~~-~~~~~~~Q~a~~~~l~~~ 350 (481)
T PTZ00377 273 SFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGR-RGGYFELTNIPPEVREQIYKLASIN-LCSNVVGQLMTGLMCNPP 350 (481)
T ss_pred cHHHHHHhhcccccCCeEEEEEecCCcccccCCcC-ceEEEEEeCCCHHHHHHHHHHhhee-cCCChHHHHHHHHHhCCC
Confidence 11 111 137889999975 65664 5788875 889999888766432 223333333332222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 404 -----------KTLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 404 -----------~tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
+.+....++..++++.+.+.|+++|.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~ 389 (481)
T PTZ00377 351 REGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS 389 (481)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 1122222335677888999999887654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=181.98 Aligned_cols=206 Identities=17% Similarity=0.203 Sum_probs=145.4
Q ss_pred hHHHHHHHHHhhhC---C-CcEEEeCCHH-HHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC
Q 012321 211 TTVVVEEKMSALEG---A-ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD 284 (466)
Q Consensus 211 ~~~~Lee~lA~l~g---~-e~~v~~~SG~-aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D 284 (466)
.++.+.+.+.+..| . ++.|++++|+ +++..++..+ +++||+|++++|+|+..... ....|+++..++ +
T Consensus 67 lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~--~ 140 (364)
T PRK07865 67 LREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVG----ARLAGATVVRAD--S 140 (364)
T ss_pred HHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHH----HHhcCCEEEecC--C
Confidence 34444444444434 2 4567777776 8888877777 79999999999999875433 345688877664 3
Q ss_pred HHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-h---h-------ccCCcE
Q 012321 285 MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-A---L-------SLGADL 350 (466)
Q Consensus 285 ~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~-p---l-------~~gaDi 350 (466)
+++++. . ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....... + + .....+
T Consensus 141 ~~~l~~---~-~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (364)
T PRK07865 141 LTELGP---Q-RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLL 216 (364)
T ss_pred hhhCCc---c-cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEE
Confidence 444332 3 4899999999999999986 5678888999999999999987532211 1 1 112349
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++.|+||.++.+| .+.||++++++++++++..+...+...+......+...+ +.+....+...++++.+.+.|+++
T Consensus 217 ~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 295 (364)
T PRK07865 217 AVHSLSKQSNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA 295 (364)
T ss_pred EEeechhccCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998777 568999999999999988776666555555444443333 334444556677788888888875
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=176.45 Aligned_cols=250 Identities=20% Similarity=0.211 Sum_probs=187.5
Q ss_pred ccccCCCccCChHHHHHHHhcc-cCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEc
Q 012321 177 VVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTT 255 (466)
Q Consensus 177 i~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~ 255 (466)
-++|+++.-++.++++.....+ .+.-.|+ .+|.+.++|+++++++|.+.++|++||++|+.++|.+.++||+.|++.
T Consensus 3 ~f~SDn~~g~~~~m~eam~~a~~~~~~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~ 80 (342)
T COG2008 3 DFRSDNVAGPTPEMREALAAANAVGDDVYG--EDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICH 80 (342)
T ss_pred ccccCccCCCCHHHHHHHHhccccCCCCCC--CCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEe
Confidence 3678888888888877766655 4445677 689999999999999999999999999999999999999999999998
Q ss_pred CCCccchHHHHHhhcccC--CcEEEEeC----CCCHHHHHHhccCC-----CceEEEEeCCCCCCccccc---HHHHHHH
Q 012321 256 TDCYRKTRIFIETVLPKM--GITATVID----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDL 321 (466)
Q Consensus 256 ~~~y~~t~~~~~~~l~~~--gi~v~~vd----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~d---l~~I~el 321 (466)
...|-.++..= ..+-+ +.++..++ ..++|+|++.|..+ .+.++++++.+|-.|++++ +++|.++
T Consensus 81 ~~aHi~~~E~G--a~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~ 158 (342)
T COG2008 81 ETAHIYTDECG--APEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAV 158 (342)
T ss_pred ccccceecccC--cHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHH
Confidence 88775543210 01111 23333333 24799999977632 3667777788778899986 5678888
Q ss_pred HHhcCCEEEEeCCC------CCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHH-
Q 012321 322 CHKKGAIVCIDGTF------ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN- 394 (466)
Q Consensus 322 a~~~gillIvD~t~------a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~- 394 (466)
||++|+.|++|.+- +.+........++|++..++||.++.+. +.+++++.+++++++.+++..|+.++..
T Consensus 159 ~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r 235 (342)
T COG2008 159 CKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKAR 235 (342)
T ss_pred HHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhh
Confidence 99999999999982 1123334445689999999999988774 6778899999999999999998876553
Q ss_pred -HHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHcCCCcEEE
Q 012321 395 -AAYLIIRGMKTLHLRVQQQNST--ALRMAKILEAHPKVKRV 433 (466)
Q Consensus 395 -~A~l~lrgL~tl~~R~e~~~~n--a~~La~~L~~~p~V~~V 433 (466)
-+...+..|++--.++....+| |++|++.|++.|+++..
T Consensus 236 ~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~ 277 (342)
T COG2008 236 FLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLA 277 (342)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceec
Confidence 2333334455444455555677 99999999988887543
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=184.40 Aligned_cols=212 Identities=16% Similarity=0.174 Sum_probs=147.4
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. ++.+++++|+ +++..++..++++||+|++++|+|+.....+ ...|+++..++.
T Consensus 69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~ 144 (395)
T PRK08175 69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGA----VIAGAQVRSVPL 144 (395)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCeEEEEec
Confidence 345555555543 42 3356666766 8999988899999999999999999854333 345777666643
Q ss_pred ----CCHHHHHHhccC--CCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc----ch-hc---
Q 012321 283 ----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS--- 345 (466)
Q Consensus 283 ----~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~~----~p-l~--- 345 (466)
.+.++++++++. .++++|++++|+||||.+.+. ++|.++|+++|+++|+|++|...... .+ ..
T Consensus 145 ~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~ 224 (395)
T PRK08175 145 VEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG 224 (395)
T ss_pred ccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence 247788887763 248999999999999999986 68899999999999999998643211 11 11
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHH---HHHHHHh-hHHHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA---AYLIIRG-MKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~---A~l~lrg-L~tl~~R~e~~~~na~~L 420 (466)
.+..+++.|+||.++.+| .+.||+++++++++++.+.+.....+.+... +..++.. -+.+....+.+.++++.+
T Consensus 225 ~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (395)
T PRK08175 225 AKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVL 303 (395)
T ss_pred cccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 123477899999998777 4578999999999998877654443322222 2222322 123444455667778888
Q ss_pred HHHHHcCC
Q 012321 421 AKILEAHP 428 (466)
Q Consensus 421 a~~L~~~p 428 (466)
.+.|++++
T Consensus 304 ~~~L~~~~ 311 (395)
T PRK08175 304 VKGLHEAG 311 (395)
T ss_pred HHHHHHcC
Confidence 88888763
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-19 Score=181.62 Aligned_cols=213 Identities=14% Similarity=0.178 Sum_probs=149.9
Q ss_pred hHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 211 TTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g-------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
....|++.++++++ .++.+++++|++|+..++.+++++||+|++++|.|...... ++..|+++..++.
T Consensus 67 g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~~~ 142 (397)
T PRK07568 67 GIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGF----ATSAGVKIVPVTTK 142 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHH----HHHcCCEEEEeecC
Confidence 35677777777752 24555556666999999999999999999999999875432 3445777666542
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhcc-
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSL- 346 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~~- 346 (466)
.++++++++++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .....
T Consensus 143 ~~~g~~~~~~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~ 221 (397)
T PRK07568 143 IEEGFHLPSKEEIEKLITPK-TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLE 221 (397)
T ss_pred cccCCCCCCHHHHHHhcCcc-ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcC
Confidence 2468899988774 999999999999999984 788999999999999999998643211 11111
Q ss_pred ---CCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 012321 347 ---GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL 418 (466)
Q Consensus 347 ---gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~ 418 (466)
...+++.|+||.++++|. +.|++++ ++++++.+...... ....+......+...+ +.+....+...+++.
T Consensus 222 ~~~~~~i~~~S~SK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (397)
T PRK07568 222 GLEDRVIIIDSVSKRYSACGA-RIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRD 299 (397)
T ss_pred CCcCCEEEEecchhhccCCCc-ceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 224899999999998774 5788887 46788777654432 1223333333222222 334455566778888
Q ss_pred HHHHHHHcCCCc
Q 012321 419 RMAKILEAHPKV 430 (466)
Q Consensus 419 ~La~~L~~~p~V 430 (466)
.+.+.|++++.+
T Consensus 300 ~l~~~L~~~~~~ 311 (397)
T PRK07568 300 ILYEELNKIPGV 311 (397)
T ss_pred HHHHHHhcCCCc
Confidence 899999887654
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=184.50 Aligned_cols=215 Identities=18% Similarity=0.223 Sum_probs=155.5
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+++.-..|++.+++++|. ++.|++++|+ +++..++.+++++||+|++..|.|+.... .++..|+++..++.
T Consensus 66 ~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~----~~~~~g~~~~~v~~ 141 (371)
T PRK05166 66 RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHED----YPTMMGARVERVTV 141 (371)
T ss_pred hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCeEEEeec
Confidence 345555556899999999986 4567777776 89999999999999999999999987543 34456777776643
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----ch---hc-c-
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KA---LS-L- 346 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~----~p---l~-~- 346 (466)
.|+++++++++++ +++|++++|+||||.+++.+++.++++. +++++|+|++|...... .. +. .
T Consensus 142 ~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 220 (371)
T PRK05166 142 TPDLGFDLDALCAAVARA-PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARG 220 (371)
T ss_pred CCCCCCCHHHHHHhhhcC-CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcC
Confidence 3789999998774 8999999999999999998777777654 47899999998643321 11 11 1
Q ss_pred CCcEEEeccccccccccCceEEEEE-eChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vv-g~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~ 422 (466)
...|++.|+||.++.+| ++.||++ +++++++.+++.+..++ .+.+....+ +..-+.++..++...++.+.+.+
T Consensus 221 ~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 297 (371)
T PRK05166 221 LPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVALALAERERLKK 297 (371)
T ss_pred CCEEEEeechHhhhcch-hheeeeecCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 12488999999999777 4578866 47888888876554333 333333222 22234555556677778888999
Q ss_pred HHHcC
Q 012321 423 ILEAH 427 (466)
Q Consensus 423 ~L~~~ 427 (466)
.|+++
T Consensus 298 ~L~~~ 302 (371)
T PRK05166 298 ELAEM 302 (371)
T ss_pred HHHHC
Confidence 99887
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=177.93 Aligned_cols=210 Identities=13% Similarity=0.079 Sum_probs=165.8
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.+.++++++++++++|.+++++++||++|+.+++.++ +++||+|+++.++|..+...+ ...|+++.++|.
T Consensus 30 ~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~----~~~G~~~v~~d~d~~~~ 105 (375)
T PRK11706 30 GGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTM 105 (375)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcC
Confidence 4778999999999999999999999999998887766 689999999999999876443 346888877753
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--cchhccCCcEEEeccc--c
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSAT--K 357 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~--~~pl~~gaDivv~S~s--K 357 (466)
.|+++++++++++ +++|++. |++|...|+++|.++|+++|+++|+|++++.+.. .++.....|+.++|++ |
T Consensus 106 ~~d~~~le~~i~~~-tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K 181 (375)
T PRK11706 106 NIDETLIEAAITPK-TRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETK 181 (375)
T ss_pred CcCHHHHHHhcCCC-CeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCc
Confidence 4789999999874 9999974 5789999999999999999999999999876542 2333333588888877 9
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHHHH-------------------hCC--CchHHHHHHHHHhhHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHV-------------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQNST 416 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~~~-------------------~G~--~ls~~~A~l~lrgL~tl~~R~e~~~~n 416 (466)
.++.+. .|++++.++++.++++.++.. .|. .++.+.+.+++..++.++...++..++
T Consensus 182 ~l~~g~--gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~ 259 (375)
T PRK11706 182 NYTAGE--GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL 259 (375)
T ss_pred cccccC--CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997532 245666677888877766531 122 235566777788888899888899999
Q ss_pred HHHHHHHHHcCC
Q 012321 417 ALRMAKILEAHP 428 (466)
Q Consensus 417 a~~La~~L~~~p 428 (466)
++.+.+.|.+.+
T Consensus 260 ~~~~~~~L~~~~ 271 (375)
T PRK11706 260 WQRYYDALAPLA 271 (375)
T ss_pred HHHHHHHhcCCC
Confidence 999999998876
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=182.46 Aligned_cols=217 Identities=21% Similarity=0.255 Sum_probs=167.4
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.+.+++||+++++++|.+.++.++||+.|+.+++.++ +++||+|+++..+|..+...+ ...|.++.++|.
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai----~~~G~~pv~~Di~~~~~ 99 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAI----LWAGAEPVFVDIDPETL 99 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHH----HHTT-EEEEE-BETTTS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHH----HHhccEEEEEeccCCcC
Confidence 5899999999999999999999999999999999988 689999999999999876443 346888888874
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--hhccCCcEEEecc--cc
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSA--TK 357 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~--pl~~gaDivv~S~--sK 357 (466)
.|++.++++++++ |++|++ .+..|...|+++|.++|+++|++||.|.+++.+...+ +...-.|+.++|+ +|
T Consensus 100 ~id~~~~~~~i~~~-t~ai~~---~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K 175 (363)
T PF01041_consen 100 NIDPEALEKAITPK-TKAILV---VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTK 175 (363)
T ss_dssp SB-HHHHHHHHHTT-EEEEEE---E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTS
T ss_pred CcCHHHHHHHhccC-ccEEEE---ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCC
Confidence 3899999999985 999987 5667999999999999999999999999987764433 2222249999998 59
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHH-----------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV-----------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~-----------------~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~ 419 (466)
.+.... ||+++.+ +++.++++.++.. +...++.+.|.+++..|+.++.++++.++++..
T Consensus 176 ~i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~ 252 (363)
T PF01041_consen 176 IITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR 252 (363)
T ss_dssp SS-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 886553 7888886 5677777765431 123477889999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEeCC
Q 012321 420 MAKILEAHPKVKRVHYP 436 (466)
Q Consensus 420 La~~L~~~p~V~~V~~P 436 (466)
+.+.|.+.+.+.....+
T Consensus 253 y~~~L~~~~~~~~~~~~ 269 (363)
T PF01041_consen 253 YREALAGIPGIKPPPIP 269 (363)
T ss_dssp HHHHHTTGTTEEEEGCG
T ss_pred HHHHHhcCCCccccccc
Confidence 99999999987655443
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=180.89 Aligned_cols=205 Identities=17% Similarity=0.213 Sum_probs=141.9
Q ss_pred HHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 212 TVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 212 ~~~Lee~lA~l~g~----e~~v~~~SG~-aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
++++.+.+.+.+|. ++.+++++|+ +++..++..+ +++||+|++++|+|+..... +...|.++..++ ++
T Consensus 62 r~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~--~~ 135 (357)
T TIGR03539 62 REAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVG----ALLAGATPVAAD--DP 135 (357)
T ss_pred HHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHH----HHhcCCEEeccC--Ch
Confidence 34444444443342 3566666665 8988888877 79999999999999875433 344677776654 44
Q ss_pred HHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-ch---h-------ccCCcEE
Q 012321 286 EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-KA---L-------SLGADLV 351 (466)
Q Consensus 286 e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-~p---l-------~~gaDiv 351 (466)
++++ ..++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... .+ + .....++
T Consensus 136 ~~l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~ 211 (357)
T TIGR03539 136 TELD----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLA 211 (357)
T ss_pred hhcC----ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEE
Confidence 4332 235899999999999999986 567889999999999999998642211 11 1 1112489
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.|+||.++.+| .++||+++++++++++++.+...+...+......+...+ +.+....+++.++++.+.+.|+++
T Consensus 212 ~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 289 (357)
T TIGR03539 212 VHSLSKRSNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA 289 (357)
T ss_pred EeccccccCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999998777 568999999999999888776655555555444443333 223334455667777888888875
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=181.83 Aligned_cols=212 Identities=13% Similarity=0.144 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe--C
Q 012321 212 TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--D 281 (466)
Q Consensus 212 ~~~Lee~lA~l~------g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v--d 281 (466)
...|++.+++++ +. .+.|++++|+ +++..++.+++++||+|++++|+|......+ ...|..+..+ +
T Consensus 74 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~v~~~~~ 149 (404)
T PRK09265 74 LFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAV----SLSGGKPVHYLCD 149 (404)
T ss_pred cHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHH----HHcCCEEEEEecc
Confidence 457888888776 32 3456666666 8889999999999999999999999755433 2345444333 2
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhcc--
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSL-- 346 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~~-- 346 (466)
..|+++++++++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... ....+
T Consensus 150 ~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 228 (404)
T PRK09265 150 EEAGWFPDLDDIRSKITPR-TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP 228 (404)
T ss_pred cccCCCCCHHHHHHhcccc-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC
Confidence 14789999988764 999999999999999998 888999999999999999998643211 11111
Q ss_pred C-CcEEEeccccccccccCceEEEEEe--ChHH----HHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHH---HHHHH
Q 012321 347 G-ADLVLHSATKFIGGHNDVLAGSISG--SGKL----VTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHL---RVQQQ 413 (466)
Q Consensus 347 g-aDivv~S~sK~lgG~gdv~gG~vvg--~~el----i~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~---R~e~~ 413 (466)
. .-+++.|+||.++.+|. +.||++. ++++ ++.++... ......+....+++...+ +.+.. ..++.
T Consensus 229 ~~~vi~~~S~SK~~~~pGl-RiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 306 (404)
T PRK09265 229 DLLCVTFNGLSKAYRVAGF-RVGWMVLSGPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSINELILPGGRL 306 (404)
T ss_pred CceEEEEecchhhccCccc-ceEEEEEeCchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 1 23678999999988874 5677774 4443 33333221 112223333333322222 22222 22355
Q ss_pred HHHHHHHHHHHHcCCCc
Q 012321 414 NSTALRMAKILEAHPKV 430 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V 430 (466)
.++++.+.+.|+++|.+
T Consensus 307 ~~~r~~~~~~L~~~~~~ 323 (404)
T PRK09265 307 YEQRDRAWELLNAIPGV 323 (404)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 67778888999887654
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=179.60 Aligned_cols=245 Identities=22% Similarity=0.256 Sum_probs=178.3
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCcEE
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAES---TVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~---~v~~~SG~aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v 277 (466)
+++......+++++.++++.|++. .+++++++.++..++.++ +++||+|++....|++....+....++.|+++
T Consensus 37 ~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v 116 (371)
T PF00266_consen 37 RSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEV 116 (371)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEE
T ss_pred hhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 343346678899999999999744 556677779999999998 79999999999999998877777677788888
Q ss_pred EEeC-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEE
Q 012321 278 TVID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLV 351 (466)
Q Consensus 278 ~~vd-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDiv 351 (466)
+.++ ..|+++++++++++ +++|++...+|.+|...|+++|.++||++|+++++|.+++.+.. .+..++|+|++
T Consensus 117 ~~i~~~~~~~~~~~~~~~~l~~~-~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~ 195 (371)
T PF00266_consen 117 RVIPADPGGSLDLEDLEEALNPD-TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFL 195 (371)
T ss_dssp EEEEEGTTSSCSHHHHHHHHHTT-ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEE
T ss_pred ccccccccchhhhhhhhhhhccc-cceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccccccee
Confidence 7764 34799999999874 99999999999999999999999999999999999999877644 45556789999
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHH-----------H----------hCCCchHHHHHHHHHhhHHH----
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-----------V----------LGGALNPNAAYLIIRGMKTL---- 406 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-----------~----------~G~~ls~~~A~l~lrgL~tl---- 406 (466)
+.|.+| ++|+.+ .|+++.+++++++++.... . .+++.+....+.+...++.+
T Consensus 196 ~~s~~K-l~gp~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g 272 (371)
T PF00266_consen 196 VFSSHK-LGGPPG--LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG 272 (371)
T ss_dssp EEESTS-TTSSST--EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH
T ss_pred eecccc-cCCCCc--hhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccc
Confidence 999999 555542 5899999988888742111 0 11233332222222233322
Q ss_pred -HHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEecee
Q 012321 407 -HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCVF 465 (466)
Q Consensus 407 -~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~~ 465 (466)
+...++..+.++++.+.|++.|.+.. +.|.-. ...+++++|.++++
T Consensus 273 ~~~i~~~~~~l~~~~~~~l~~~~~~~~-~~~~~~------------~~~~~i~~~~~~~~ 319 (371)
T PF00266_consen 273 IERIRERIRELAEYLREALEELPGIEV-LGPDDE------------PRRPSIVSFNLPGS 319 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTEEE-SSSSCG------------GBGTTEEEEEETTS
T ss_pred cccchhhhhhHHHHHHhhhhcCCceeE-eeeccc------------ccccceEEEeecCC
Confidence 33445667788889999999988743 222111 12467888877653
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=184.14 Aligned_cols=222 Identities=17% Similarity=0.185 Sum_probs=154.9
Q ss_pred CCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
++......+++++.+++++|.+ +.+++++|++++.+++..+ .++||+|++....|++....+.. +...|++++
T Consensus 38 ~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~-~~~~g~~v~ 116 (364)
T PLN02651 38 GWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRH-LQQEGFEVT 116 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHH-HHhcCCEEE
Confidence 3333556888999999999973 4555566668877776554 47899999999999886655533 345688887
Q ss_pred EeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEE
Q 012321 279 VIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVL 352 (466)
Q Consensus 279 ~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv 352 (466)
.++. .|+++++++++++ +++|++++++|+||.+.|+++|.++||++|+++++|++++.+. ..+..++|+|+++
T Consensus 117 ~v~~~~~~~~d~~~l~~~i~~~-t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~ 195 (364)
T PLN02651 117 YLPVKSDGLVDLDELAAAIRPD-TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMS 195 (364)
T ss_pred EEccCCCCcCCHHHHHHhcCCC-cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEE
Confidence 7753 4799999999875 9999999999999999999999999999999999999988763 3556678999999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHH-------HhCCCchHHHHHHHHHhhHHH----HHHHHHHHHHHHHHH
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMA 421 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-------~~G~~ls~~~A~l~lrgL~tl----~~R~e~~~~na~~La 421 (466)
.|.+||++++| .|+++.+++...++..... ...++.+....+.+...++.+ +...+++.+.++++.
T Consensus 196 ~s~hK~~gp~G---~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~ 272 (364)
T PLN02651 196 ISGHKIYGPKG---VGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLL 272 (364)
T ss_pred echhhhCCCCc---eEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999855444 5777766654443321111 112223322222222333333 223345556677777
Q ss_pred HHHHc-CCCcE
Q 012321 422 KILEA-HPKVK 431 (466)
Q Consensus 422 ~~L~~-~p~V~ 431 (466)
+.|++ .|+++
T Consensus 273 ~~l~~~~~~~~ 283 (364)
T PLN02651 273 NGLRAKLGGVR 283 (364)
T ss_pred HHHHhhCCCEE
Confidence 77765 46663
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=184.45 Aligned_cols=221 Identities=18% Similarity=0.195 Sum_probs=154.9
Q ss_pred CCCccCCC--CchhHHHHHH----HHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhccc
Q 012321 200 ASFEYGRY--GNPTTVVVEE----KMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272 (466)
Q Consensus 200 ~~~~Y~R~--~~p~~~~Lee----~lA~l~g~e~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~ 272 (466)
.++.++|+ ++|+.+.||+ ++++++|.+.+++ ++||+.|+..++.+++++||+|++++..|++....- .....
T Consensus 58 ~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g-~~~~~ 136 (416)
T PRK13034 58 EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHG-AKVSL 136 (416)
T ss_pred CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecC-Cccee
Confidence 35667777 6899999999 9999999999966 589999999999999999999999999998732100 00000
Q ss_pred CCcEE--EEeC------CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012321 273 MGITA--TVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (466)
Q Consensus 273 ~gi~v--~~vd------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~---- 340 (466)
.+... ..++ ..|++++++.++..++++|+++.+. +|...|+++|.++|+++|++|++|++++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~ 214 (416)
T PRK13034 137 SGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGE 214 (416)
T ss_pred ccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCC
Confidence 11111 1222 2688999988855458999987665 47888999999999999999999999655433
Q ss_pred -cchhccCCcEEEeccccccccccCceEEEEEeChHH-HHHHHHHHHH--hCCCchHHHHHHHHHhhHH----HHHHHHH
Q 012321 341 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHV--LGGALNPNAAYLIIRGMKT----LHLRVQQ 412 (466)
Q Consensus 341 -~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~~~~~--~G~~ls~~~A~l~lrgL~t----l~~R~e~ 412 (466)
..++. ++|++++|++|+++|+. ||+++++++. .++++..... .+....+..+.+++..++. ...+.++
T Consensus 215 ~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~ 290 (416)
T PRK13034 215 HPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQ 290 (416)
T ss_pred CCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 33333 58999999999998774 6888776544 4444443211 1112233333333222222 2344688
Q ss_pred HHHHHHHHHHHHHcC
Q 012321 413 QNSTALRMAKILEAH 427 (466)
Q Consensus 413 ~~~na~~La~~L~~~ 427 (466)
..+++++|.+.|++.
T Consensus 291 l~~~a~~l~~~L~~~ 305 (416)
T PRK13034 291 VIANAQALAEVLKER 305 (416)
T ss_pred HHHHHHHHHHHHHHc
Confidence 889999999999876
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=181.75 Aligned_cols=208 Identities=20% Similarity=0.252 Sum_probs=148.7
Q ss_pred cCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+.||+++. ..|++++++++|.. +.|++++|+ ++|..+ ..++++|| |+++.|+|+..... ++..|+++..+
T Consensus 48 ~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l-~~~~~~g~-v~v~~P~y~~y~~~----~~~~g~~~~~v 120 (339)
T PRK06959 48 WRRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRAL-PALLPRGR-VGIAPLAYSEYAPA----FARHGHRVVPL 120 (339)
T ss_pred HHhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHH-HHhcCCCe-EEEcCCCcHHHHHH----HHHCCCEEEee
Confidence 45677887 99999999999973 578888887 787755 45678877 88899999886543 34567887776
Q ss_pred CCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHH---HHhcCCEEEEeCCCCCCCccchh----ccCCcEEEe
Q 012321 281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL---CHKKGAIVCIDGTFATPLNQKAL----SLGADLVLH 353 (466)
Q Consensus 281 d~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~el---a~~~gillIvD~t~a~~~~~~pl----~~gaDivv~ 353 (466)
+..+ + .+.+ .++++++++||||||.+.+.+++.++ |++++.++|+||+|.......++ ....-+++.
T Consensus 121 ~~~~-~----~~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~ 194 (339)
T PRK06959 121 DEAA-D----TLPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLR 194 (339)
T ss_pred cccc-h----hccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEe
Confidence 6533 2 2333 36799999999999999987666555 56789999999998764322211 112238999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
|+||.++.+| ++.||+++++++++++++.+..++ .+......+ +..-.......++..++++.+.+.|+++
T Consensus 195 SfSK~~gl~G-lRiGy~v~~~~li~~l~~~~~~~~--vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 268 (339)
T PRK06959 195 SVGKFFGLAG-VRAGFVLAAPALLAALRDALGAWT--VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH 268 (339)
T ss_pred cChhhcCCcc-hheEEEecCHHHHHHHHHhcCCCC--CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999777 467999999999999988765443 233333333 2222334445567777888999999886
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-19 Score=179.64 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=157.1
Q ss_pred chhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 209 NPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
....+++++.+++++|.+ + .+++++|++|+..++.+++++||+|++..+.|.+.. +...++..|.++.+++
T Consensus 31 ~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 108 (356)
T cd06451 31 LALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWG 108 (356)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCC
Confidence 345789999999999972 3 456677789999999999999999999988877632 1233455677777664
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~l 359 (466)
..|++++++.++++++++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+. ..+....++|+++.|++|++
T Consensus 109 ~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l 188 (356)
T cd06451 109 EAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKAL 188 (356)
T ss_pred CCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhc
Confidence 3478999999976359999999999999999999999999999999999999976432 23444568899999999999
Q ss_pred ccccCceEEEEEeChHHHHHHHH---HH----------H------HhCCCchHHHHHHHHHhhH-----HHHHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRN---LH----------H------VLGGALNPNAAYLIIRGMK-----TLHLRVQQQNS 415 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~---~~----------~------~~G~~ls~~~A~l~lrgL~-----tl~~R~e~~~~ 415 (466)
+++. ..|+++.++++++++.. .. . ..+++.+....+.+...++ .+....++..+
T Consensus 189 ~~p~--g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~ 266 (356)
T cd06451 189 GAPP--GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRR 266 (356)
T ss_pred cCCC--CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9875 25899999988877653 00 0 0112222222121112222 23444566677
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
+++.+.+.|++.
T Consensus 267 ~~~~l~~~L~~~ 278 (356)
T cd06451 267 LAKALREGLEAL 278 (356)
T ss_pred HHHHHHHHHHHc
Confidence 888898988875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=184.38 Aligned_cols=216 Identities=15% Similarity=0.170 Sum_probs=154.6
Q ss_pred CchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 208 GNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~-e~~v~~~SG-~aAi~~al~all----~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.....+.+++.+++++|. ++.+++++| ++++..++.+++ ++||+|+++...|++...... .++..|+++..++
T Consensus 41 ~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~ 119 (381)
T PRK02948 41 ASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIP 119 (381)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEe
Confidence 345678899999999985 456666555 688888887775 578999999988887665543 4566788777764
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEecc
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA 355 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~ 355 (466)
. .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|+++..+. ..+..++++|+++.|+
T Consensus 120 ~~~~~~~d~~~l~~~l~~~-~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~ 198 (381)
T PRK02948 120 VDKSGLIRLVDLERAITPD-TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSA 198 (381)
T ss_pred eCCCCCCCHHHHHHhcCCC-CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecH
Confidence 2 4789999999774 8999999999999999999999999999999999998765432 2334456899999999
Q ss_pred ccccccccCceEEEEEeChHH-HHHHHH----HHHHhCCCchHHHH---HHHHHh-hHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 356 TKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAA---YLIIRG-MKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~el-i~~l~~----~~~~~G~~ls~~~A---~l~lrg-L~tl~~R~e~~~~na~~La~~L~~ 426 (466)
||+++.+| .|+++.++++ +..+.. ......++.+.... ..+++. ++.++.+.+++.++++++.+.|++
T Consensus 199 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 275 (381)
T PRK02948 199 HKIYGPKG---VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQT 275 (381)
T ss_pred HhcCCCCc---EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988766 4677666653 111110 00001122233222 222222 245566677888889999999988
Q ss_pred CC
Q 012321 427 HP 428 (466)
Q Consensus 427 ~p 428 (466)
.+
T Consensus 276 ~~ 277 (381)
T PRK02948 276 LP 277 (381)
T ss_pred CC
Confidence 75
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=178.10 Aligned_cols=206 Identities=21% Similarity=0.267 Sum_probs=152.4
Q ss_pred CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcC---CCccchHHHHHhhcccCCcEEEEeCC
Q 012321 208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTT---DCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~---~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
..+..++||+++|+++|. ++++++++|.+|+..++.+++++||+|+++. +.|.... ..++..|.++. ..
T Consensus 52 ~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~----~~~~l~ga~~~--~~ 125 (346)
T TIGR03576 52 PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIP----RSCKLAGAEYF--ES 125 (346)
T ss_pred CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHH----HHHHHcCCEEe--cc
Confidence 447899999999999998 8888899999999999999999999999753 4555533 33444566543 33
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCCccc---ccHHHHHHHHHhcCCEEEEeCCCCCCCc----c-chhccCCcEEEec
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----Q-KALSLGADLVLHS 354 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPtG~v---~dl~~I~ela~~~gillIvD~t~a~~~~----~-~pl~~gaDivv~S 354 (466)
.++++++. . + ++++|++ +++|++|.+ .|+++|+++|+++|++|++||+|+.++. . .....+.|+++.|
T Consensus 126 ~~l~~l~~-~-~-~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s 201 (346)
T TIGR03576 126 DELSELKK-I-D-GTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTS 201 (346)
T ss_pred CCHHHHhh-C-c-CceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEec
Confidence 45666543 2 3 3788888 557899998 5799999999999999999999987542 1 1234568999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~ 426 (466)
+||+++|. ++|++++++++++.+++....++.+.++..++.++..|+.+ ..+.+...++...+.+.|++
T Consensus 202 ~SKalaG~---r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 202 TDKLMDGP---RGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred cchhcccc---ceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 99987665 58999999999999998887766555666666666666553 22334455555555566653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=186.17 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhhC---------CCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 212 TVVVEEKMSALEG---------AESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 212 ~~~Lee~lA~l~g---------~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
...|++.|+++++ .++.|++++|+ +++..++.+++.+||.|++++|.|+.....+. ...|+++..++
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~---~~~g~~~v~v~ 164 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLK---WRTGVEIVPIH 164 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHh---hcCCcEEEEEe
Confidence 3456676766653 13456677776 89999999999999999999999998654332 13566666554
Q ss_pred C-------CCHHHHHHhccC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012321 282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----- 341 (466)
Q Consensus 282 ~-------~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----- 341 (466)
. .|++++++++++ .++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...+.
T Consensus 165 ~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~ 244 (468)
T PLN02450 165 CSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV 244 (468)
T ss_pred cCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcc
Confidence 2 256888887753 24899999999999999996 567888899999999999998743221
Q ss_pred chhc------------cCCcEEEeccccccccccCceEEEEEeChH-HHHHHHHHHHHhCCCchHHHHHHHHHhhH----
Q 012321 342 KALS------------LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMK---- 404 (466)
Q Consensus 342 ~pl~------------~gaDivv~S~sK~lgG~gdv~gG~vvg~~e-li~~l~~~~~~~G~~ls~~~A~l~lrgL~---- 404 (466)
..+. ...-+++.|+||.++.+| .+.|+++++++ +++.+.+... ++. .+....+++...|+
T Consensus 245 s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~~-~~~-~s~~~Q~a~~~~L~~~~~ 321 (468)
T PLN02450 245 SVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMSS-FGL-VSSQTQYLLSALLSDKKF 321 (468)
T ss_pred cHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHHHHHhh-cCC-CCHHHHHHHHHHhCCchh
Confidence 1111 123488999999998777 46789998754 5665555432 222 33333333333222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 ---TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 ---tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+....++..++.+.+.+.|+++
T Consensus 322 ~~~~l~~~~~~l~~rr~~l~~~L~~~ 347 (468)
T PLN02450 322 TKNYLEENQKRLKQRQKKLVSGLEAA 347 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 24445666777888888999876
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=181.80 Aligned_cols=220 Identities=19% Similarity=0.228 Sum_probs=147.3
Q ss_pred chhHHHHHHHHHhh---hCC--CcEEE-eCCHHHHHHHHHHHhc-----cC-CCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 209 NPTTVVVEEKMSAL---EGA--ESTVI-MASGMSASTVMLLALV-----PA-GGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 209 ~p~~~~Lee~lA~l---~g~--e~~v~-~~SG~aAi~~al~all-----~p-GD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.+....+++.++++ .++ ++.++ ++++++++..++.++. ++ +|+|+++...|++..... ..++..|++
T Consensus 38 ~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~-~~~~~~G~~ 116 (382)
T TIGR03403 38 TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATC-AFLESLGVE 116 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHH-HHHHHCCCE
Confidence 44455555555444 443 34454 5555589998888752 45 478999999998866554 345667888
Q ss_pred EEEeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CccchhccCCcE
Q 012321 277 ATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADL 350 (466)
Q Consensus 277 v~~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~-~~~~pl~~gaDi 350 (466)
+..++. .|+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+..++|+|+
T Consensus 117 v~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~ 195 (382)
T TIGR03403 117 VTYLPINEQGTITAEQVREAITEK-TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDF 195 (382)
T ss_pred EEEEecCCCCCCCHHHHHHhcccC-CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCE
Confidence 887753 3789999999875 899999999999999999999999999999999999998765 334555678999
Q ss_pred EEeccccccccccCceEEEEEeChHHH-HH-HHH---HHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLV-TQ-IRN---LHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA 421 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli-~~-l~~---~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~La 421 (466)
++.|++|+++++| .|+++.++++. .. +.. ......++.+....+.+...++ .++...++..+.++++.
T Consensus 196 ~~~s~~K~~gp~G---~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 272 (382)
T TIGR03403 196 LSFSAHKFHGPKG---VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLE 272 (382)
T ss_pred EEEcchhhCCCCc---eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999987666 35555443321 01 000 0000012222222222222222 24445566777888899
Q ss_pred HHHHcCCCcEEE
Q 012321 422 KILEAHPKVKRV 433 (466)
Q Consensus 422 ~~L~~~p~V~~V 433 (466)
+.|++.|.+..+
T Consensus 273 ~~L~~~~~~~~~ 284 (382)
T TIGR03403 273 DALLELPDVFVV 284 (382)
T ss_pred HHHhcCCCEEEE
Confidence 999888877443
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=178.86 Aligned_cols=211 Identities=14% Similarity=0.132 Sum_probs=143.7
Q ss_pred HHHHHHHHHhhhCC---Cc-EEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-----
Q 012321 212 TVVVEEKMSALEGA---ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----- 281 (466)
Q Consensus 212 ~~~Lee~lA~l~g~---e~-~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----- 281 (466)
++.+.+.+.+.+|. .+ .|++++|+ +++..++.+++.+||.|++++|+|+..... +...|+++..++
T Consensus 77 R~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~ 152 (403)
T PRK08636 77 RLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQA----FILAGGNVHKMPLEYNE 152 (403)
T ss_pred HHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEeccccc
Confidence 44444444444453 23 57677776 999999999999999999999999986543 334566665542
Q ss_pred --CCCHH----HHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch-hc
Q 012321 282 --PADME----GLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS 345 (466)
Q Consensus 282 --~~D~e----~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p-l~ 345 (466)
..|++ .+++++++ .++++|++++|+||||.+++ +++|.++|++|++++|+|++|...... .+ ..
T Consensus 153 ~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~ 232 (403)
T PRK08636 153 DFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILE 232 (403)
T ss_pred cCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhc
Confidence 23444 45666642 25899999999999999986 577888899999999999998754321 11 11
Q ss_pred c----CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc---hHHHHHHHHHh-hHHHHHHHHHHHHHH
Q 012321 346 L----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL---NPNAAYLIIRG-MKTLHLRVQQQNSTA 417 (466)
Q Consensus 346 ~----gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l---s~~~A~l~lrg-L~tl~~R~e~~~~na 417 (466)
. ...+++.|+||.++.+| .+.||+++++++++.+++.....+... ....+..++.+ .+.+....+.+.++.
T Consensus 233 ~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (403)
T PRK08636 233 VEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRR 311 (403)
T ss_pred CCCccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1 12355789999998777 568999999999998887665432222 22222223332 233444455667778
Q ss_pred HHHHHHHHcC
Q 012321 418 LRMAKILEAH 427 (466)
Q Consensus 418 ~~La~~L~~~ 427 (466)
+.+.+.|+++
T Consensus 312 ~~l~~~L~~~ 321 (403)
T PRK08636 312 DVLIESFANA 321 (403)
T ss_pred HHHHHHHHHC
Confidence 8888888875
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=179.25 Aligned_cols=212 Identities=20% Similarity=0.224 Sum_probs=158.2
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
.++...+|+++|++++|.+.+++++||++|+..++..+.. +++.|+.....|......+ ...++++..+...|+
T Consensus 89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~----~~~~~~~~~~~~~d~ 164 (407)
T PRK09064 89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGI----RRSRCEKHIFRHNDV 164 (407)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHH----HHcCCcEEEECCCCH
Confidence 4788999999999999998999999999998888877654 7777776655565543222 234566666666788
Q ss_pred HHHHHhccC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------hhccCCcEEEe
Q 012321 286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLH 353 (466)
Q Consensus 286 e~Le~ai~~---~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---------pl~~gaDivv~ 353 (466)
+++++.++. .++++|++|+|+|++|.+.|+++|.++|+++|++||+||+|+.+.+.. .+....|+++.
T Consensus 165 ~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~ 244 (407)
T PRK09064 165 AHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEG 244 (407)
T ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEE
Confidence 888887752 348999999999999999999999999999999999999987443210 11123589999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~lrgL~tl~---~R~e~~~~na~~La~~L~~~ 427 (466)
|++|.|++. ||++++++++++.++..... +....++..+..++..++.+. .+.++..++++++.+.|++.
T Consensus 245 t~sKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (407)
T PRK09064 245 TLAKAFGVM----GGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA 319 (407)
T ss_pred ecchhhhcc----CceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999875 48999999999888765432 233455655555555555543 33567788889999999875
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=179.57 Aligned_cols=216 Identities=15% Similarity=0.104 Sum_probs=151.5
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+++....|++.|+++++. ++.|++++|+ ++|..++.++. +||.|++++|+|...... ++..|+++..++.
T Consensus 52 ~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~----~~~~g~~~~~v~~ 126 (360)
T PRK07392 52 RHYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRA----LRAFGATVKELPL 126 (360)
T ss_pred hcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHH----HHHcCCeEEEEec
Confidence 334455567899999999975 4456666666 89988888754 689999999999886543 3445666655532
Q ss_pred ----------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----chh---c
Q 012321 283 ----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---S 345 (466)
Q Consensus 283 ----------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~----~pl---~ 345 (466)
.+++++++... +++++++++|+||||.+++.++|.++++++++ +|+||+|...... ... .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~ 203 (360)
T PRK07392 127 PLDQPSPGLTLRLQTLPPQLT--PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA 203 (360)
T ss_pred ccccCCcccccCHHHHHHhcc--CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh
Confidence 23555555442 47999999999999999999999999999985 6779998654321 111 1
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~---tl~~R~e~~~~na~~La 421 (466)
...-+++.|+||.++.+| ++.||+++++++++++...+.. ...+....+++...++ ......+...++++.+.
T Consensus 204 ~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~ 280 (360)
T PRK07392 204 EYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQWRDP--WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALF 280 (360)
T ss_pred cCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhhCCC--CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 123488999999999777 4689999999998888765432 3345555444444333 22323345667788899
Q ss_pred HHHHcCCCcE
Q 012321 422 KILEAHPKVK 431 (466)
Q Consensus 422 ~~L~~~p~V~ 431 (466)
+.|+.++++.
T Consensus 281 ~~L~~~~~~~ 290 (360)
T PRK07392 281 QGLASLPGLT 290 (360)
T ss_pred HHHHhCCCcE
Confidence 9998877653
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=183.15 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=163.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+...+||++|+++++.++++++++|..++..++.+++++||.|++....|...... +...+.++.+++..|.+.
T Consensus 152 ~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~----~~ls~~~~~~~~~nd~~~ 227 (481)
T PLN02822 152 TIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNG----LYLSRSTIVYFKHNDMES 227 (481)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHH----HHHcCCeEEEECCCCHHH
Confidence 4567899999999999999999999999889999999999999999887777654332 223356777788777777
Q ss_pred HHHhccC--------CCc-eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-------hhc---cCC
Q 012321 288 LEAALNN--------NNV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------ALS---LGA 348 (466)
Q Consensus 288 Le~ai~~--------~~t-klV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~-------pl~---~ga 348 (466)
++..+++ .++ ++|++|.++|++|.+.|+++|.++|++||++||+||+|+.+.+.+ -.. ...
T Consensus 228 l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~ 307 (481)
T PLN02822 228 LRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKI 307 (481)
T ss_pred HHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCC
Confidence 6665531 124 799999999999999999999999999999999999987554321 011 146
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKI 423 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~ 423 (466)
||++.|++|.++.. ||++++++++++.++.... .++..+++..+..++..++.+ ...+++.+++.+.+.+.
T Consensus 308 dii~~s~sKalg~~----GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~ 383 (481)
T PLN02822 308 DIITAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKG 383 (481)
T ss_pred eEEEecchhhhhhC----CeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 89999999999865 4899999999988774332 334445566555444444333 45677888999999999
Q ss_pred HHcCCC
Q 012321 424 LEAHPK 429 (466)
Q Consensus 424 L~~~p~ 429 (466)
|++.++
T Consensus 384 L~~~~g 389 (481)
T PLN02822 384 LSDIPG 389 (481)
T ss_pred HHhcCC
Confidence 988644
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=178.97 Aligned_cols=211 Identities=20% Similarity=0.221 Sum_probs=157.9
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
.+...+||++|++++|.+.+++++||++|+..++..+.. +||.|++....|+.+...+ ...|.++..++..|++
T Consensus 89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~ 164 (406)
T PRK13393 89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPA 164 (406)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHH
Confidence 457899999999999999999999999999998887765 7888877777777655433 2346666667777888
Q ss_pred HHHHhcc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------hhccCCcEEEec
Q 012321 287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS 354 (466)
Q Consensus 287 ~Le~ai~---~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---------pl~~gaDivv~S 354 (466)
++++.++ +.++++|++|+++|++|.+.|+++|.++|+++|+++|+|++++.+++.. ......|+++.|
T Consensus 165 ~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~t 244 (406)
T PRK13393 165 DLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGT 244 (406)
T ss_pred HHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEe
Confidence 8877764 2247999999999999999999999999999999999999987443211 111235888999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
++|.+++. ||++++++++++.++..... ++...++..+..++..++.+ ..+.++..++.+++.+.|++.
T Consensus 245 lsKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (406)
T PRK13393 245 LAKAFGVM----GGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA 318 (406)
T ss_pred Cchhhccc----CceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999975 48999999998888765433 24445555444444444433 333455667888899988864
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=176.91 Aligned_cols=216 Identities=16% Similarity=0.160 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHhhhCCC-cEEEeCC-HHHHHHHHHHHhcc----CC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGAE-STVIMAS-GMSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e-~~v~~~S-G~aAi~~al~all~----pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...+++++++++++|.+ +.+++++ +++++..++.++.. +| ++|++....|++....+. .++..|+++..++.
T Consensus 42 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-~~~~~G~~v~~v~~ 120 (353)
T TIGR03235 42 KAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIR-ALERNGFTVTYLPV 120 (353)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHH-HHHhcCCEEEEEcc
Confidence 45678999999999973 4455555 56899888887753 56 789998888887665543 34556888887753
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.|+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+...+++|+++.|++
T Consensus 121 ~~~~~~d~~~l~~~l~~~-~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~ 199 (353)
T TIGR03235 121 DESGRIDVDELADAIRPD-TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGH 199 (353)
T ss_pred CCCCcCCHHHHHHhCCCC-CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehh
Confidence 4799999999874 89999999999999999999999999999999999999776543 3333568999999999
Q ss_pred cccccccCceEEEEEeChHHHHH--HHHHHH-------HhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQ--IRNLHH-------VLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~--l~~~~~-------~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~La~~ 423 (466)
|+++.+| .|+++.+++.... ++.... ...++.+....+.+...+ +.++.+.+++.+.+..+.+.
T Consensus 200 K~~gp~g---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~ 276 (353)
T TIGR03235 200 KIYGPKG---IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDA 276 (353)
T ss_pred hcCCCCc---eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9976554 5777777654322 111000 011222221111111122 23455667788888888888
Q ss_pred HHcCCCcE
Q 012321 424 LEAHPKVK 431 (466)
Q Consensus 424 L~~~p~V~ 431 (466)
|++ ++++
T Consensus 277 l~~-~g~~ 283 (353)
T TIGR03235 277 LQT-LGVK 283 (353)
T ss_pred hcc-CCeE
Confidence 876 5554
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=176.93 Aligned_cols=215 Identities=14% Similarity=0.204 Sum_probs=152.3
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.+|+++....|+++++++++. .+.|++++|+ +++..++.++ .+ +.|++++|+|+..... +...|+++..++.
T Consensus 49 ~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~----~~~~g~~~~~~~~ 122 (354)
T PRK06358 49 VEYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERA----LKAFDAEIEYAEL 122 (354)
T ss_pred hcCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHH----HHHcCCeeEEEeC
Confidence 345566678999999999986 4566666666 8998888775 44 6899999999875433 3445666655532
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----hhc---
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALS--- 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----pl~--- 345 (466)
.| +++.+.+.+ ++++|++++|+||||.+++ +++|.++|+++++++|+|++|....... ++.
T Consensus 123 ~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 200 (354)
T PRK06358 123 TEETNFAAN-EIVLEEIKE-EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLE 200 (354)
T ss_pred ccccCCCcc-HHHHHhhcc-CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhcc
Confidence 34 455555655 4899999999999999996 6788888999999999999986543221 111
Q ss_pred -cCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~L 420 (466)
...-|++.|+||.++.+| ++.||+++ ++++++.++.....+ ..+....+++...+ +.+...++...++++.+
T Consensus 201 ~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l 277 (354)
T PRK06358 201 NFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQMREPW--SINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFL 277 (354)
T ss_pred CCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhCCCC--cchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 123488999999999777 45788887 567888887765432 33444444443333 33455666778888899
Q ss_pred HHHHHcCCCc
Q 012321 421 AKILEAHPKV 430 (466)
Q Consensus 421 a~~L~~~p~V 430 (466)
.+.|++++++
T Consensus 278 ~~~L~~~~~~ 287 (354)
T PRK06358 278 YNGLSEFKGI 287 (354)
T ss_pred HHHHhcCCCc
Confidence 9999887664
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=175.59 Aligned_cols=210 Identities=21% Similarity=0.248 Sum_probs=172.7
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---- 283 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~---- 283 (466)
.|.+.++|++++++.|.+.++.++||+.|+.++++++ +.|||+||++..+|..+...+ -..|.+..++|.+
T Consensus 33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i----~~~Ga~PVFvDid~~T~ 108 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAV----LLVGAKPVFVDIDPDTL 108 (374)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHH----HHcCCeEEEEecCCccc
Confidence 5889999999999999999999999999999999966 699999999999999877544 2357788887743
Q ss_pred --CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEecc--cc
Q 012321 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK 357 (466)
Q Consensus 284 --D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~--sK 357 (466)
|++.||++|+++ ||+|+. .+-.|...|+++|.++|++||++||.|.+++.+...+....| .|+.++|| +|
T Consensus 109 nid~~~ie~aIt~~-tKAIip---Vhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K 184 (374)
T COG0399 109 NIDPDLIEAAITPR-TKAIIP---VHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATK 184 (374)
T ss_pred CCCHHHHHHHcccC-CeEEEE---ehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCC
Confidence 899999999986 999985 567799999999999999999999999998776544433333 48888887 58
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHH--------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~--------------~G--~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~L 420 (466)
.+.... ||+++++ +++.++++.++.. .| ..++.+.|.+.+..|+.++.++++.+++++.+
T Consensus 185 ~ittgE---GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y 261 (374)
T COG0399 185 NLTTGE---GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIY 261 (374)
T ss_pred CccccC---ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887653 7888886 4677777655431 12 23566788888999999999999999999999
Q ss_pred HHHHHcCCC
Q 012321 421 AKILEAHPK 429 (466)
Q Consensus 421 a~~L~~~p~ 429 (466)
.+.|++.+.
T Consensus 262 ~~~l~~~~~ 270 (374)
T COG0399 262 AEALKGLPG 270 (374)
T ss_pred HHHhhcCCC
Confidence 999998764
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=177.96 Aligned_cols=210 Identities=12% Similarity=0.108 Sum_probs=145.7
Q ss_pred CchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 208 GNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
+++....|++.++++++. .+.|++++|+ +++..++.+++++||+|++++|+|...... ....|..+..++.
T Consensus 63 ~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~----~~~~g~~~~~~~l~~~ 138 (357)
T PRK14809 63 PKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMS----ARYHHGEVREYPVSKA 138 (357)
T ss_pred CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCeEEEEecccC
Confidence 344567899999999985 4566666666 899999999999999999999999753322 2233444443321
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCccch----hc-cCCcEE
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKA----LS-LGADLV 351 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~~~p----l~-~gaDiv 351 (466)
.+.+++++.+. ++++|++++|+||||.+++.+++.++++.. ++++|+||+|........ .. ...-++
T Consensus 139 ~~~~~~~~~~~~~~~--~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~ 216 (357)
T PRK14809 139 DDFEQTADTVLDAYD--GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAV 216 (357)
T ss_pred cCCCcCHHHHHHhhc--CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEE
Confidence 24566666553 379999999999999999987777776653 789999999875432111 11 123488
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHc
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+.|+||.++.+| ++.||+++++++++++++....+ ..+...++.++..+ +.++...+...++.+.+.+.|..
T Consensus 217 ~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 291 (357)
T PRK14809 217 LRTFSKAYGLAG-LRLGYAVVPEEWADAYARVNTPF--AASELACRAGLAALDDDEHVERTVETARWAREYIREELDA 291 (357)
T ss_pred EecchhHhcCcc-hhheeeecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999777 46799999999999888765433 33444444443333 33444455566666777777754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=177.52 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=149.4
Q ss_pred cCCCCchhHHHHHHHHHhhhC---C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 204 YGRYGNPTTVVVEEKMSALEG---A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g---~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
+++|+.+....|+++++++++ . ++.|++++|+ ++|..++.++ |+|++.+|+|..... .++..|+++.
T Consensus 50 ~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~----~~~~~g~~~~ 121 (335)
T PRK14808 50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRI----FAKAVGAKFL 121 (335)
T ss_pred hhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHH----HHHHcCCeEE
Confidence 455666678899999999987 2 4567777776 8998888776 789999999987553 3445677777
Q ss_pred EeCCCC---HHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--h-hc-cCCcEE
Q 012321 279 VIDPAD---MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--A-LS-LGADLV 351 (466)
Q Consensus 279 ~vd~~D---~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~--p-l~-~gaDiv 351 (466)
.++..+ ++.. .+. ++++|++++|+||||.+++.+++.+++ ++++++|+||+|....... + +. ...-++
T Consensus 122 ~v~~~~~~~~~~~--~~~--~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~ 196 (335)
T PRK14808 122 EVPLTKDLRIPEV--NVG--EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAV 196 (335)
T ss_pred EecCCCcCCCChh--Hcc--CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEE
Confidence 665421 1111 232 378999999999999999999999998 5799999999987532111 1 11 223488
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCC-chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA-LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~-ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.|+||.++.+| .+.||+++++++++++++.+..++.. +....+..++...+.+..++++..++.+.+.+.|+++
T Consensus 197 ~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 272 (335)
T PRK14808 197 IRTFSKAFSLAA-QRIGYVVSSEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM 272 (335)
T ss_pred EEechhhccCcc-cceEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999777 46799999999999988766433322 2222333334444455566667777788888999876
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=177.45 Aligned_cols=209 Identities=15% Similarity=0.080 Sum_probs=140.0
Q ss_pred hhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 210 PTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
..++++.+.+++.+|. ++.|++++|+ +++..++..++ ++||.|+++.|+|+..... +...|+++..++..
T Consensus 64 ~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~g~~v~~v~~~ 139 (374)
T PRK05839 64 SLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGA----AIASRAKVLLMPLT 139 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHH----HHhcCCEEEEeecc
Confidence 3445555555665562 5667777776 78888877764 5799999999999885543 34567877776532
Q ss_pred -----CHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---h-h-------
Q 012321 284 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-L------- 344 (466)
Q Consensus 284 -----D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---p-l------- 344 (466)
+++..+..+ + ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|....... . .
T Consensus 140 ~~~~~~~d~~~~~~-~-~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~ 217 (374)
T PRK05839 140 KENDFTPSLNEKEL-Q-EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVG 217 (374)
T ss_pred cccCCcCCcchhhh-c-cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccC
Confidence 122222223 3 4899999999999999986 5677888999999999999987532111 1 1
Q ss_pred --ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHH
Q 012321 345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALR 419 (466)
Q Consensus 345 --~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~ 419 (466)
..+.-|++.|+||.++.+| .+.||++++++++++++......+.+.+......+ +..-+.++...++..++.+.
T Consensus 218 ~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (374)
T PRK05839 218 NESFKNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKL 296 (374)
T ss_pred ccccCcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 1123488999999998887 56899999999999988776554444333322222 22223344445556666666
Q ss_pred HHHHHH
Q 012321 420 MAKILE 425 (466)
Q Consensus 420 La~~L~ 425 (466)
+.+.|.
T Consensus 297 ~~~~l~ 302 (374)
T PRK05839 297 AREILG 302 (374)
T ss_pred HHHhcC
Confidence 766663
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=168.90 Aligned_cols=217 Identities=17% Similarity=0.203 Sum_probs=154.8
Q ss_pred CchhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 208 GNPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
..+...++++.++++++ .++.+++++|++++..++.++.++||+|+++.+.|.+....+ +..|+++..
T Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~----~~~~~~~~~ 109 (350)
T cd00609 34 PDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAA----RLAGAEVVP 109 (350)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEEE
Confidence 34445556666666554 345677777789999999999999999999999999866443 445666666
Q ss_pred eCCC-----CH--HHHHHhccCCCceEEEEeCCCCCCcccccHHH---HHHHHHhcCCEEEEeCCCCCCCc--------c
Q 012321 280 IDPA-----DM--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATPLN--------Q 341 (466)
Q Consensus 280 vd~~-----D~--e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~---I~ela~~~gillIvD~t~a~~~~--------~ 341 (466)
++.. +. +.++..+++ ++++|++++|+||+|.+.|+++ |.++|+++|+++|+|++++.+.. .
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~ 188 (350)
T cd00609 110 VPLDEEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALA 188 (350)
T ss_pred EecccccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccccccc
Confidence 6532 22 556666655 4999999999999999998654 55899999999999999865322 1
Q ss_pred chhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012321 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST 416 (466)
Q Consensus 342 ~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~n 416 (466)
.....+.|+++.|++|+++.++ ..+|++++++ ++++.++..........+...+..+...+ +.++...+++.++
T Consensus 189 ~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (350)
T cd00609 189 LLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRR 267 (350)
T ss_pred CcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2334567899999999998333 3579999988 78888887766543444443333333222 3445556677888
Q ss_pred HHHHHHHHHcCCCc
Q 012321 417 ALRMAKILEAHPKV 430 (466)
Q Consensus 417 a~~La~~L~~~p~V 430 (466)
++++.+.|++++..
T Consensus 268 ~~~l~~~L~~~~~~ 281 (350)
T cd00609 268 RDALLEALKELGPL 281 (350)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-18 Score=181.34 Aligned_cols=217 Identities=16% Similarity=0.203 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 210 PTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
+.++.+.+.+.+..|. ++.|++++|. +|+..++..++ .+||.|+++.|.|+.....+ ...|.++..++
T Consensus 172 ~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~----~~~g~~~v~~~l~~ 247 (534)
T PLN02231 172 GLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASI----ALHGGTLVPYYLDE 247 (534)
T ss_pred HHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHH----HHcCCEEEEEecCc
Confidence 3344444444443342 3455555555 99999999988 48999999999999865433 34455554442
Q ss_pred ----CCCHHHHHHhccCC-----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc--c---hh
Q 012321 282 ----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--K---AL 344 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~--~---pl 344 (466)
..|+++|++++++. ++|+|++++|+||||.+++ +++|+++|+++|++||+||+|...... . ++
T Consensus 248 ~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~ 327 (534)
T PLN02231 248 ATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSF 327 (534)
T ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccH
Confidence 34789999888641 4899999999999999985 678899999999999999998754321 1 11
Q ss_pred -c----cC------CcEEEecccccc-ccccCceEEEEEe---ChHHHHHHHHHHHHhC-CC-chHHHHHHHHHh-----
Q 012321 345 -S----LG------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLG-GA-LNPNAAYLIIRG----- 402 (466)
Q Consensus 345 -~----~g------aDivv~S~sK~l-gG~gdv~gG~vvg---~~eli~~l~~~~~~~G-~~-ls~~~A~l~lrg----- 402 (466)
. .| .-++++|+||.+ +.+| .++||++. ++++++.+.+...... .. .....+..++..
T Consensus 328 ~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~ 406 (534)
T PLN02231 328 KKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGD 406 (534)
T ss_pred HHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCc
Confidence 1 11 137789999976 5455 46888875 6788888877654221 11 122222223321
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 403 ------MKTLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 403 ------L~tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
++......+.+.++++.+.+.|++++++.
T Consensus 407 ~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~ 441 (534)
T PLN02231 407 ESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT 441 (534)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 11222234567788899999999887665
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=178.23 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=138.8
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
....+++++.+++++|.+ ..++.++|+.++..++..++++||+||+.++.|.+.. +...++..|++++.++.
T Consensus 41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~ 118 (401)
T PLN02409 41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWG 118 (401)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCC
Confidence 456788899999999863 3566677789999999999999999999998887643 23456677888777642
Q ss_pred --CCHHHHHHhccC---CCceEEEEeCCCCCCcccccHHHHHHH--HHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 283 --ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDL--CHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 283 --~D~e~Le~ai~~---~~tklV~lesPsNPtG~v~dl~~I~el--a~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
.|+++|++++++ +++++|++.+++||||.+.|+++|.++ ||++|+++|+|++++.+.. .+..++|+|+++.|
T Consensus 119 ~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s 198 (401)
T PLN02409 119 QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTG 198 (401)
T ss_pred CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEc
Confidence 478999999975 258999999999999999999999999 9999999999999875433 34446789999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRN 382 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~ 382 (466)
.+|+++++. ..|+++.++++++++..
T Consensus 199 ~~K~l~~P~--G~G~l~~~~~~~~~~~~ 224 (401)
T PLN02409 199 SQKALSLPT--GLGIVCASPKALEASKT 224 (401)
T ss_pred CccccCcCC--CcceeEECHHHHHHHhc
Confidence 999998865 36899999988887653
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=177.70 Aligned_cols=214 Identities=20% Similarity=0.186 Sum_probs=151.1
Q ss_pred chhHHHHHH----HHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEeC-
Q 012321 209 NPTTVVVEE----KMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID- 281 (466)
Q Consensus 209 ~p~~~~Lee----~lA~l~g~e~~-v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~-~l~~~gi~v~~vd- 281 (466)
.+..+.+++ .+++++|.+.. ++++||++|+..++.+++++||+|+++.++|++....... .+...|.++..++
T Consensus 66 ~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 145 (416)
T PRK00011 66 CEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV 145 (416)
T ss_pred chHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCc
Confidence 445666665 88999998655 6668999999999999999999999999999764321111 1223345555543
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCCcEE
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLV 351 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~gaDiv 351 (466)
..|++++++++++.++++|+++.++ +|...|+++|.++|+++|+++|+|+++..+.. ..++. ++|++
T Consensus 146 ~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~ 222 (416)
T PRK00011 146 DEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV 222 (416)
T ss_pred CcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence 3579999999975458999986554 45668999999999999999999999754432 22344 68999
Q ss_pred EeccccccccccCceEEEEEeC-hHHHHHHHHHHHHh--CCCchHHHHHH--H-HHhh-HHHHHHHHHHHHHHHHHHHHH
Q 012321 352 LHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAAYL--I-IRGM-KTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~--G~~ls~~~A~l--~-lrgL-~tl~~R~e~~~~na~~La~~L 424 (466)
+.|++|+++|+ .||+++++ ++++++++...... +.......+.+ + +..+ +.++.+++++.++++.+.+.|
T Consensus 223 ~~S~~K~l~g~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L 299 (416)
T PRK00011 223 TTTTHKTLRGP---RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL 299 (416)
T ss_pred EecCCcCCCCC---CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999765 47888885 68888887654322 11112221111 1 1212 235778889999999999999
Q ss_pred HcCC
Q 012321 425 EAHP 428 (466)
Q Consensus 425 ~~~p 428 (466)
++.+
T Consensus 300 ~~~g 303 (416)
T PRK00011 300 AERG 303 (416)
T ss_pred HhCC
Confidence 8753
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=177.08 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=163.8
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh---------ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al---------l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.+...+||+.+++++|.+.+++++||++|+.+++.++ +++||+||++.++|..+...+. ..|.++.+
T Consensus 62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~----~~G~~pv~ 137 (438)
T PRK15407 62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII----QNGLVPVF 137 (438)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH----HcCCEEEE
Confidence 4678999999999999999999999999999988875 4889999999999988764442 35676666
Q ss_pred eCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch---hccCCcE
Q 012321 280 IDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---LSLGADL 350 (466)
Q Consensus 280 vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p---l~~gaDi 350 (466)
+|. .|+++++++++++ |++|++++ ++|...|+++|.++|+++|++||+|++++.+...+. ..+| |+
T Consensus 138 vdvd~~~~~id~~~le~~i~~~-tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~ 212 (438)
T PRK15407 138 VDVELPTYNIDASLLEAAVSPK-TKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DI 212 (438)
T ss_pred EecCCCcCCcCHHHHHHHcCcC-CeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ce
Confidence 543 3799999999874 99999865 468888999999999999999999999876643332 2333 89
Q ss_pred EEeccc--cccccccCceEEEEEeCh-HHHHHHHHHHHH-------------------------------------hC--
Q 012321 351 VLHSAT--KFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-------------------------------------LG-- 388 (466)
Q Consensus 351 vv~S~s--K~lgG~gdv~gG~vvg~~-eli~~l~~~~~~-------------------------------------~G-- 388 (466)
.++|++ |.+.... ||+++.++ ++.++++.++.. .|
T Consensus 213 ~~fSf~~~k~~~~ge---GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n 289 (438)
T PRK15407 213 ATLSFYPAHHITMGE---GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYN 289 (438)
T ss_pred EEEeCCCCCCccccC---ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccc
Confidence 999985 5565432 68888765 455555443220 12
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
..++.+.|.+++..|+.++.++++.+++++++.+.|.+.|.
T Consensus 290 ~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~ 330 (438)
T PRK15407 290 LKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED 330 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 23667788999999999999999999999999999988764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=176.82 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=136.7
Q ss_pred hHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-----
Q 012321 211 TTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----- 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----- 281 (466)
.++++.+.+.+..|. .+.|++++|+ +++..++. ++.+||.|++++|+|+... .... ...|+++..++
T Consensus 78 LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~-~~~~--~~~g~~~v~v~~~~~~ 153 (433)
T PRK06855 78 TREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHS-SAEA--AHAGYPPVTYRLDPEN 153 (433)
T ss_pred HHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHH-HHHH--HhcCCeEEEEeccccc
Confidence 344444444443342 3345555555 89988874 8899999999999999743 2111 12244433332
Q ss_pred --CCCHHHHHHhccC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----hh-cc---C
Q 012321 282 --PADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL-SL---G 347 (466)
Q Consensus 282 --~~D~e~Le~ai~~-~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----pl-~~---g 347 (466)
..|+++|+++++. .+++++++++|+||||.+++ +++|+++|+++|+++|+||+|....... ++ .. +
T Consensus 154 ~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~ 233 (433)
T PRK06855 154 NWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDV 233 (433)
T ss_pred CCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcC
Confidence 2478999999863 24799999999999999997 5678888999999999999987543211 11 11 1
Q ss_pred CcEEEeccccccccccCceEEEEEeC-----h---HHHHHHHHHHHHhCCCchHHHHHHHHHhh------HHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGS-----G---KLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQ 413 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~-----~---eli~~l~~~~~~~G~~ls~~~A~l~lrgL------~tl~~R~e~~ 413 (466)
..|++.|+||.++.+|. +.||++++ + ++++.+...... ..+.+.+..+.+.+.+ +.++...+.+
T Consensus 234 ~~I~~~S~SK~~~~pGl-RiG~ii~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~ 311 (433)
T PRK06855 234 PGIALKGISKELPWPGS-RCGWIEVYNADKDEVFKKYINSILNAKMI-EVCSTTLPQMAIPRIMSHPEYKNYLKERNKRY 311 (433)
T ss_pred CeEEEecCccccCCCcc-eEEEEEEeCCchhhHHHHHHHHHHHhhcc-ccCCChHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 34899999999998884 57888862 2 223333322221 1223334434333333 2344555667
Q ss_pred HHHHHHHHHHHHcCCCc
Q 012321 414 NSTALRMAKILEAHPKV 430 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V 430 (466)
.++.+.+.+.|++++.+
T Consensus 312 ~~r~~~~~~~L~~~~~~ 328 (433)
T PRK06855 312 EKRSNIAYEKLKDVPGL 328 (433)
T ss_pred HHHHHHHHHHHhcCCCe
Confidence 77888888999876543
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=174.00 Aligned_cols=211 Identities=16% Similarity=0.188 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 210 PTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.....+++.++++++ .++.++++++++++..++.+++.+||.|++++|+|...... ++..|+++..++
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~----~~~~g~~v~~v~ 148 (394)
T PRK06836 73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFY----VDNHGGKLVVVP 148 (394)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEEe
Confidence 345566666666653 23455555556999999999999999999999999985533 345688877764
Q ss_pred C------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHh------cCCEEEEeCCCCCCCcc----c
Q 012321 282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ----K 342 (466)
Q Consensus 282 ~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~------~gillIvD~t~a~~~~~----~ 342 (466)
. .|+++++++++++ +++|++++|+||||.+++ +++|+++|++ ||+++|+|++|...... .
T Consensus 149 ~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~ 227 (394)
T PRK06836 149 TDTDTFQPDLDALEAAITPK-TKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP 227 (394)
T ss_pred cCCccCcCCHHHHHhhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC
Confidence 3 4789999999774 999999999999999987 6678888888 89999999998743221 0
Q ss_pred h-h-ccCCcEEEeccccccccccCceEEEEEeChHHHHH------HHHHHHHhC-CCchHHHHHHHHHhhHHHHHHHHHH
Q 012321 343 A-L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ------IRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQ 413 (466)
Q Consensus 343 p-l-~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~------l~~~~~~~G-~~ls~~~A~l~lrgL~tl~~R~e~~ 413 (466)
. . ..+..+++.|+||.++.+| .+.||+++++++.+. +.......+ ...+......+.+.++.- .+.+++
T Consensus 228 ~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~ 305 (394)
T PRK06836 228 YIFKYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDVSIY 305 (394)
T ss_pred ChHHccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHHHHH
Confidence 1 1 1234699999999999777 467999988765432 111122222 233444444444444331 234556
Q ss_pred HHHHHHHHHHHHcC
Q 012321 414 NSTALRMAKILEAH 427 (466)
Q Consensus 414 ~~na~~La~~L~~~ 427 (466)
.++...+.+.|+++
T Consensus 306 ~~~r~~l~~~L~~~ 319 (394)
T PRK06836 306 KRNRDLLYDGLTEL 319 (394)
T ss_pred HHHHHHHHHHHHhC
Confidence 67788888888876
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=174.89 Aligned_cols=214 Identities=22% Similarity=0.236 Sum_probs=148.7
Q ss_pred CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHH-hhcccCCcEEEEe-
Q 012321 208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-TVLPKMGITATVI- 280 (466)
Q Consensus 208 ~~p~~~~Le----e~lA~l~g~e~~-v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~-~~l~~~gi~v~~v- 280 (466)
+.+....++ +.+++++|.+.. ++++||++|+..++.+++++||+|+++++.|++...... ..+...|.++..+
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 138 (402)
T cd00378 59 GCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVP 138 (402)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEec
Confidence 344444444 457788998654 555789999999999999999999999999987532211 1134456544333
Q ss_pred -C------CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCC
Q 012321 281 -D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGA 348 (466)
Q Consensus 281 -d------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~ga 348 (466)
+ ..|++++++++.+.++++|++++|+|| ...|+++|.++|+++|+++|+|+++..+.. ..++. ++
T Consensus 139 ~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~ 215 (402)
T cd00378 139 YGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GA 215 (402)
T ss_pred CCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CC
Confidence 2 238999999986445899999888775 567999999999999999999999643321 23334 68
Q ss_pred cEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHH--hCCCchHHH-H-HH-HHHhhH-HHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV--LGGALNPNA-A-YL-IIRGMK-TLHLRVQQQNSTALRMA 421 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~--~G~~ls~~~-A-~l-~lrgL~-tl~~R~e~~~~na~~La 421 (466)
|+++.|+||+++|+ .+|++++++ +++++++..... .+....+.. + .. +...++ ....+++++.++++.+.
T Consensus 216 dv~~~s~sK~l~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 292 (402)
T cd00378 216 DVVTTTTHKTLRGP---RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA 292 (402)
T ss_pred cEEEeccccCCCCC---CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999665 378888876 888888765432 121111111 1 11 122222 45667788899999999
Q ss_pred HHHHcC
Q 012321 422 KILEAH 427 (466)
Q Consensus 422 ~~L~~~ 427 (466)
+.|+++
T Consensus 293 ~~L~~~ 298 (402)
T cd00378 293 EALKER 298 (402)
T ss_pred HHHHhC
Confidence 999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=172.48 Aligned_cols=219 Identities=20% Similarity=0.216 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 210 PTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~~SG~-aAi~~al~all~p--GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
+..+++++++++++|.+ +.+++++|+ ++...++.+++.+ ||+|+++++.|+.+...+....+..|+++..++.
T Consensus 64 ~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~ 143 (398)
T cd00613 64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE 143 (398)
T ss_pred HHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC
Confidence 46789999999999975 666777676 4545555556666 9999999999999876665444455677777653
Q ss_pred ---CCHHHHHHhccCCCceEEEEeCCCCCCcccccH-HHHHHHHHhcCCEEEEeCCCCCC-CccchhccCCcEEEecccc
Q 012321 283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV-KLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ---~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl-~~I~ela~~~gillIvD~t~a~~-~~~~pl~~gaDivv~S~sK 357 (466)
.|+++++++++++ |++|++++|+ ++|.+.|+ ++|.++|+++|+++|+|+++..+ ...++..+++|+++.|++|
T Consensus 144 ~~~~d~~~l~~~i~~~-t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K 221 (398)
T cd00613 144 GGTVDLEALKEEVSEE-VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQK 221 (398)
T ss_pred CCCcCHHHHHHhcCCC-eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccc
Confidence 3689999999875 9999999985 89999985 99999999999999999987543 3345556789999999999
Q ss_pred ccccc--cCceEEEEEeChHHHHHHHHH-------------------------HHHhC------CC-chHHHHHHHHH--
Q 012321 358 FIGGH--NDVLAGSISGSGKLVTQIRNL-------------------------HHVLG------GA-LNPNAAYLIIR-- 401 (466)
Q Consensus 358 ~lgG~--gdv~gG~vvg~~eli~~l~~~-------------------------~~~~G------~~-ls~~~A~l~lr-- 401 (466)
++.+. |.-++|+++.++++++.+... +...+ .. +....++..+.
T Consensus 222 ~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~ 301 (398)
T cd00613 222 TGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL 301 (398)
T ss_pred cCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh
Confidence 98321 112478999988877654110 00001 00 11122332222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012321 402 GMKTLHLRVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 402 gL~tl~~R~e~~~~na~~La~~L~~~p~V 430 (466)
+...+....+++.++++++.+.|++.+..
T Consensus 302 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 330 (398)
T cd00613 302 GPEGLKEIAERAHLNANYLAKRLKEVGGV 330 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 22334555677888899999999887643
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=177.47 Aligned_cols=221 Identities=17% Similarity=0.213 Sum_probs=159.0
Q ss_pred chhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 209 NPTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
.+.++.+.+.+....|. ++.|++|+|+ +|+.+++..+++|||.|++.+|+|.+....+ +..|+++..++
T Consensus 135 ~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~----~~~g~~~~~vp~d~ 210 (459)
T COG1167 135 PELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQAL----EALGARVIPVPVDE 210 (459)
T ss_pred HHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHH----HHcCCcEEecCCCC
Confidence 34455666666544453 4567777777 9999999999999999999999999977554 44566665553
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCC--CCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc-------chh-ccC
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPT--NPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ-------KAL-SLG 347 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPs--NPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~~-------~pl-~~g 347 (466)
..|+|+|++.+++.++|++|+ +|+ ||||.++++ ++|.++|++|++++|.|+.|+..... ..+ ..+
T Consensus 211 ~G~~~e~le~~~~~~~~k~~y~-~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~ 289 (459)
T COG1167 211 DGIDPEALEEALAQWKPKAVYV-TPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPG 289 (459)
T ss_pred CCCCHHHHHHHHhhcCCcEEEE-CCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCC
Confidence 558999999998767899998 664 999999986 57999999999999999998653221 111 224
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH----Hh-h-HHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII----RG-M-KTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l----rg-L-~tl~~R~e~~~~na~~La 421 (466)
.-|++.||||.+... ++.||+++++++++++...+.......+.+....+. .| . +.+....+.+.+..+.+.
T Consensus 290 rViy~gSFSK~l~Pg--lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~ 367 (459)
T COG1167 290 RVIYLGSFSKTLAPG--LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALL 367 (459)
T ss_pred CEEEEeeehhhcccc--cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999866 478999999999999988887776665555422221 32 2 223333344566777788
Q ss_pred HHHHcCC-CcEEEeCC
Q 012321 422 KILEAHP-KVKRVHYP 436 (466)
Q Consensus 422 ~~L~~~p-~V~~V~~P 436 (466)
+.|+++. ....+..|
T Consensus 368 ~~L~~~~~~~~~~~~p 383 (459)
T COG1167 368 EALAEYLPELATWTRP 383 (459)
T ss_pred HHHHHhCCCCeeeecC
Confidence 8888873 24344444
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=174.83 Aligned_cols=213 Identities=13% Similarity=0.156 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE----
Q 012321 209 NPTTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT---- 276 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~----g--~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~---- 276 (466)
.+....|++++++++ | . ++.|++++|+ +++..+ ..++.+||+|++++|+|......+. ..|.+
T Consensus 75 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~~----~~g~~~~~~ 149 (409)
T PRK07590 75 EQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVDTNV----MAGRTGEAN 149 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH----HcCCccccc
Confidence 344556777777654 3 2 4567777776 788765 4667899999999999998664443 33443
Q ss_pred -------EEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c
Q 012321 277 -------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K 342 (466)
Q Consensus 277 -------v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~ 342 (466)
+..++...-+.+...+...++|+|++++|+||||.+++ +++|+++|+++|+++|+||+|...... .
T Consensus 150 ~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~ 229 (409)
T PRK07590 150 EDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPH 229 (409)
T ss_pred ccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCc
Confidence 44444321111222222235899999999999999986 567888899999999999998753221 1
Q ss_pred hh-cc-C---CcEEEeccccccccccCceEEEEEeChHHHHHH------------HHHHHHhCCCchHHHHHHH---HH-
Q 012321 343 AL-SL-G---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI------------RNLHHVLGGALNPNAAYLI---IR- 401 (466)
Q Consensus 343 pl-~~-g---aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l------------~~~~~~~G~~ls~~~A~l~---lr- 401 (466)
++ .. + .-|++.|+||.++.+| .+.||+++++++++++ ...........+......+ +.
T Consensus 230 ~~~~~~~~~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~ 308 (409)
T PRK07590 230 SIYEIEGARECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP 308 (409)
T ss_pred chhhCCCcccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcC
Confidence 11 11 1 2477899999998777 4689999999888732 1111111122333333322 21
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 402 -GMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 402 -gL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.+.+....+...++++.+.+.|+++
T Consensus 309 ~~~~~~~~~~~~~~~~r~~l~~~L~~~ 335 (409)
T PRK07590 309 EGKAQIKELIDYYMENAKIIREGLESA 335 (409)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23345555666778888899999886
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=179.25 Aligned_cols=211 Identities=13% Similarity=0.213 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhhhC----C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 211 TTVVVEEKMSALEG----A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g----~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
.++++.+.+.+..| . ++.|++++|+ +|+..++.+++.|||.|++++|.|++....+. ...|+++..++.
T Consensus 99 LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~---~~~G~~vv~v~~~~ 175 (496)
T PLN02376 99 FRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLR---WRTGVEIIPVPCSS 175 (496)
T ss_pred HHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH---hhCCCEEEEEeCCC
Confidence 34444444444434 2 3456666665 99999999999999999999999998654332 135777666643
Q ss_pred -----CCHHHHHHhcc-----CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----h-h
Q 012321 283 -----ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-L 344 (466)
Q Consensus 283 -----~D~e~Le~ai~-----~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----p-l 344 (466)
.|++++++++. ..++|+|++++|+||||.+++ +++|+++|++++++||+||+|+...+.. + .
T Consensus 176 ~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~ 255 (496)
T PLN02376 176 SDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVA 255 (496)
T ss_pred CccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHH
Confidence 35777765532 125899999999999999997 5678888999999999999987543211 1 1
Q ss_pred cc---------CCc--EEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHH--
Q 012321 345 SL---------GAD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLH-- 407 (466)
Q Consensus 345 ~~---------gaD--ivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~---tl~-- 407 (466)
.. ..+ +++.|+||.|+.+| .+.|++++. +.+.+.++... .++ ..+...++++...++ .++
T Consensus 256 ~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l~~~~~~~~-~~~-~vs~~~Q~a~~~~L~d~~~~~~~ 332 (496)
T PLN02376 256 EVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSVVSCARKMS-SFG-LVSSQTQLMLASMLSDDQFVDNF 332 (496)
T ss_pred HhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHHHHHHHHHh-hcC-CCCHHHHHHHHHHhCChhHHHHH
Confidence 11 112 45799999998887 457898884 55555554433 233 234444443333222 112
Q ss_pred --HHHHHHHHHHHHHHHHHHcC
Q 012321 408 --LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 408 --~R~e~~~~na~~La~~L~~~ 427 (466)
...++..++.+.+.+.|+++
T Consensus 333 l~~~r~~l~~r~~~l~~~L~~~ 354 (496)
T PLN02376 333 LMESSRRLGIRHKVFTTGIKKA 354 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 22344556667777888764
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=171.95 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=160.2
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------CC-CEEEEcCCCccchH-HHHHhh------
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKTR-IFIETV------ 269 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~---------pG-D~VLv~~~~y~~t~-~~~~~~------ 269 (466)
...+...+|+++|+++.+.+.+++++||++|+..++..+.. +| ++||+....|.+.. ..+...
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~ 159 (401)
T PRK00854 80 FRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR 159 (401)
T ss_pred cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence 44678899999999999989999999999999999987743 23 67888877776643 222100
Q ss_pred --cccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCccc-
Q 012321 270 --LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQK- 342 (466)
Q Consensus 270 --l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~~~- 342 (466)
+......+..++..|+++|++.+.+ ++++|++|+|+||+|.+.+ +++|.++|++||+++|+||++. ++...
T Consensus 160 ~~~~~~~~~~~~~~~~d~~~le~~i~~-~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g 237 (401)
T PRK00854 160 GGFGPFTPGFRVVPFGDAEALEAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTG 237 (401)
T ss_pred ccCCCCCCCeEEeCCCCHHHHHHHhCC-CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCc
Confidence 1122234566777899999999987 4999999999999999986 9999999999999999999986 22221
Q ss_pred ------hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHH
Q 012321 343 ------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQN 414 (466)
Q Consensus 343 ------pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~--R~e~~~ 414 (466)
......|+++. +|++++.. ..+|++++++++++.++..........++..++.++..|+.+.. ..++.+
T Consensus 238 ~~~~~~~~g~~~D~~~~--~K~l~gg~-~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~ 314 (401)
T PRK00854 238 KLLAEEHEGIEADVTLI--GKALSGGF-YPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAA 314 (401)
T ss_pred hHhHHhhcCCCCCEEEe--cccccCCc-cCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 12234688875 59998754 34789999999888775332221223477777777777777654 556677
Q ss_pred HHHHHHHHHHHcCC
Q 012321 415 STALRMAKILEAHP 428 (466)
Q Consensus 415 ~na~~La~~L~~~p 428 (466)
++.+.+.+.|++..
T Consensus 315 ~~~~~l~~~L~~~~ 328 (401)
T PRK00854 315 EMGAYFLEGLRSIR 328 (401)
T ss_pred HHHHHHHHHHHhhc
Confidence 77888888887753
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-18 Score=176.48 Aligned_cols=216 Identities=18% Similarity=0.232 Sum_probs=151.7
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all----~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
+..+++|+.+++++|.+ +.+++++|++++.+++.++. ++||+|++++..|++....+.. ++..|+++.+++.
T Consensus 49 ~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~-~~~~g~~~~~v~~~ 127 (404)
T PRK14012 49 EAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLDPQ 127 (404)
T ss_pred HHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHH-HHhCCCEEEEEccC
Confidence 56788899999999974 46677777799988887663 7899999999999886554433 3446888877753
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK 357 (466)
.|+++|+++++++ +++|++++++||||.+.|+++|.++||++|+++++|++++.+.. .+....++|+++.|++|
T Consensus 128 ~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K 206 (404)
T PRK14012 128 SNGIIDLEKLEAAMRDD-TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHK 206 (404)
T ss_pred CCCcCCHHHHHHhcCCC-CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhh
Confidence 3899999999875 99999999999999999999999999999999999999876543 23445689999999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHHH--------HhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~~--------~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~La~~L~ 425 (466)
.+++++ .|++++.++.. .++..... ..| +.+....+.+-..+ ..+..+.+++.+.++++.+.|+
T Consensus 207 ~~gp~g--~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~g-t~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~ 282 (404)
T PRK14012 207 IYGPKG--IGALYVRRKPR-VRLEAQMHGGGHERGMRSG-TLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIK 282 (404)
T ss_pred ccCCCc--eEEEEEecCCC-CCCCceecCCCccCCccCC-CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 876544 34444444322 22211100 011 11111111111111 1233455667778888888888
Q ss_pred cCCCcE
Q 012321 426 AHPKVK 431 (466)
Q Consensus 426 ~~p~V~ 431 (466)
++|.+.
T Consensus 283 ~~~~i~ 288 (404)
T PRK14012 283 DIEEVY 288 (404)
T ss_pred cCCCEE
Confidence 887664
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-18 Score=176.26 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=153.0
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all----~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
....+.+++.+++++|.+ +.+++++|++++.+++.++. ++||+|+++.+.|+.....+. .++..|+++..++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-~~~~~g~~v~~v~~ 124 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-YLEREGFEVTYLPP 124 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-HHHhcCCEEEEEcc
Confidence 456788899999999973 45555566689888876653 689999999999988665543 34456888887753
Q ss_pred -----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 -----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.|+++++++++++ +++|++++++||||.+.|+++|.++|+++|+++++|++++.+.. .+....++|+++.|++
T Consensus 125 ~~~~~~d~~~l~~~l~~~-~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~ 203 (402)
T TIGR02006 125 KSNGLIDLEELKAAIRDD-TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGH 203 (402)
T ss_pred CCCCcCCHHHHHHhcCCC-CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehh
Confidence 4799999999875 99999999999999999999999999999999999999877643 2344578999999999
Q ss_pred cccccccCceEEEEEeChHHHHHHHHHHH-------HhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~l~~~~~-------~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~La~~L~ 425 (466)
|+++++| .|+++.+++...++..... ...++.+......+...++ .++.+.+++.+.++.+.+.|+
T Consensus 204 K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~ 280 (402)
T TIGR02006 204 KIYGPKG---IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIK 280 (402)
T ss_pred hhcCCCc---eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 9887555 4555554433222221110 0111222211111112222 334445566777888888888
Q ss_pred cCCCcE
Q 012321 426 AHPKVK 431 (466)
Q Consensus 426 ~~p~V~ 431 (466)
+.|.+.
T Consensus 281 ~~~~v~ 286 (402)
T TIGR02006 281 SIEEVY 286 (402)
T ss_pred cCCCEE
Confidence 888764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=176.51 Aligned_cols=215 Identities=22% Similarity=0.225 Sum_probs=153.3
Q ss_pred ccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
.|+ +.+...+|+++++++++.+.++++.+|++|+.+++.++++||| |+++++.|..+...+. ..|.++..++.
T Consensus 73 ~Y~--~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~----~~G~~~v~v~~ 145 (460)
T PRK13238 73 AYA--GSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIE----LNGATAVDLVI 145 (460)
T ss_pred ccC--CCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHH----HcCCEEEEEec
Confidence 455 4567899999999999999999999999999999999999999 9999998877654332 34555444321
Q ss_pred ---------------CCHHHHHHhccC---CCceEEEEeCCCCCCc-cccc---HHHHHHHHHhcCCEEEEeCCCCC---
Q 012321 283 ---------------ADMEGLEAALNN---NNVSLFFTESPTNPFL-RCVD---VKLVSDLCHKKGAIVCIDGTFAT--- 337 (466)
Q Consensus 283 ---------------~D~e~Le~ai~~---~~tklV~lesPsNPtG-~v~d---l~~I~ela~~~gillIvD~t~a~--- 337 (466)
.|+++|++.+++ .+|++|++++|+||+| .+++ +++|.++|++||++||+|+++..
T Consensus 146 ~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a 225 (460)
T PRK13238 146 DEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENA 225 (460)
T ss_pred cccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence 578999999974 2499999999999997 7765 67999999999999999997522
Q ss_pred --------CCccchh-------ccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHH-----hCCCchHHHH
Q 012321 338 --------PLNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV-----LGGALNPNAA 396 (466)
Q Consensus 338 --------~~~~~pl-------~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~-----~G~~ls~~~A 396 (466)
++....+ ....|+++.|..|.+.++ .||+++++ ++++++++..... .-+.++....
T Consensus 226 ~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~ 302 (460)
T PRK13238 226 YFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDM 302 (460)
T ss_pred hhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHH
Confidence 1111111 124799999999987665 37999887 5888888766421 1122233323
Q ss_pred HHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcC
Q 012321 397 YLIIRGMKT--LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 397 ~l~lrgL~t--l~~R~e~~~~na~~La~~L~~~ 427 (466)
..+..+++. -...++...++++.|++.|++.
T Consensus 303 ~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~ 335 (460)
T PRK13238 303 EALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA 335 (460)
T ss_pred HHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC
Confidence 333333433 1233444555688999999875
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=170.72 Aligned_cols=212 Identities=23% Similarity=0.255 Sum_probs=171.7
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+...+||++||+++|.|.+++++||-.|+..++.++++++|.|+.....|.+...- .+..+.++..+...|++.
T Consensus 82 ~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG----~rls~a~~~~f~HnD~~~ 157 (388)
T COG0156 82 TSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDG----IRLSRAEVRRFKHNDLDH 157 (388)
T ss_pred CcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHH----HHhCCCcEEEecCCCHHH
Confidence 4688999999999999999999999999999999999999999999998888874433 334566777788899999
Q ss_pred HHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch---------hc-cCCcEEE
Q 012321 288 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---------LS-LGADLVL 352 (466)
Q Consensus 288 Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p---------l~-~gaDivv 352 (466)
||+.+++. +.++|++|..-+..|.+.|+++|++++++||++|+|||+++.++...- +. ...||++
T Consensus 158 Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~ 237 (388)
T COG0156 158 LEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIV 237 (388)
T ss_pred HHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEE
Confidence 99999662 158999999999999999999999999999999999999988765321 11 2248999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~l---rgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+++|.||.. ||++.++..+++.++...+ .+...++|..+..++ +-++....|.++..++...+.+.++..
T Consensus 238 gTlsKAlGs~----Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~ 313 (388)
T COG0156 238 GTLGKALGSS----GGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313 (388)
T ss_pred EEchhhhccc----CceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999964 6999999999999886533 456778887654444 445555577888888888877655553
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=168.11 Aligned_cols=204 Identities=19% Similarity=0.208 Sum_probs=138.6
Q ss_pred HHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHH
Q 012321 212 TVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ 290 (466)
...|++++++++|. + +++++|+ +++..++. ++.+||+|++++|+|+.... .++..|+++..+ ..|++.+++
T Consensus 42 ~~~l~~~ia~~~~~-~-I~vt~G~~~al~~~~~-~~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~~-~~d~~~l~~ 113 (311)
T PRK08354 42 YEWLEEEFSKLFGE-P-IVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYER----VARFFAARIIKG-PNDPEKLEE 113 (311)
T ss_pred hHHHHHHHHHHHCC-C-EEECCCHHHHHHHHHH-hhCCCCeEEEeCCCcHHHHH----HHHHcCCEEeec-CCCHHHHHH
Confidence 56799999999984 4 5566665 88887774 44589999999999998654 344567777655 357899998
Q ss_pred hccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-chhccCCcEEEeccccccccccCce
Q 012321 291 ALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATKFIGGHNDVL 366 (466)
Q Consensus 291 ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-~pl~~gaDivv~S~sK~lgG~gdv~ 366 (466)
.+++ ++++++++|+||||.+.+ +++|.++|+++|+++|+||+|...... ........+++.|+||.++.+|. +
T Consensus 114 ~~~~--~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~Gl-R 190 (311)
T PRK08354 114 LVER--NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGI-R 190 (311)
T ss_pred hhcC--CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccc-e
Confidence 8863 678999999999999986 566777788999999999998765432 11123345899999999998874 5
Q ss_pred EEEEEeChHHHHHHHHHHHHhCCCchHHH-HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 367 AGSISGSGKLVTQIRNLHHVLGGALNPNA-AYLIIRG-MKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 367 gG~vvg~~eli~~l~~~~~~~G~~ls~~~-A~l~lrg-L~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
.||+++ +.+.++..+..+..+..... +..++++ .+.+..+++...+..+.+.+.|...|.
T Consensus 191 iG~~v~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 252 (311)
T PRK08354 191 VGYVKG---FEEAFRSVRMPWSIGSTGYAFLEFLIEDDFEHLRKTMPLIWREKERFEKALYVKSD 252 (311)
T ss_pred eeeeee---hHHHHHHcCCCccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 788888 55556554433322221111 1111222 334444455555556666666654443
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=173.94 Aligned_cols=212 Identities=17% Similarity=0.147 Sum_probs=139.1
Q ss_pred HHHHHHHHHhhhC-------CCcEEE---eCCHHHHHHHHHH---HhccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 212 TVVVEEKMSALEG-------AESTVI---MASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 212 ~~~Lee~lA~l~g-------~e~~v~---~~SG~aAi~~al~---all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
..+|++.+++++. .++.++ +.+|+.|+..++. +++++||+|++++|+|+..... ++..|.++.
T Consensus 74 ~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~G~~~~ 149 (404)
T PTZ00376 74 LQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNI----FKSAGLNVK 149 (404)
T ss_pred CHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCcee
Confidence 4566666666531 123344 4444477766654 6789999999999999986543 445566665
Q ss_pred EeCC-------CCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----
Q 012321 279 VIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---- 342 (466)
Q Consensus 279 ~vd~-------~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---- 342 (466)
.++. .|++.+++++++ .+++++++++|+||||.+++ +++|+++|++||+++|+|++|.......
T Consensus 150 ~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 229 (404)
T PTZ00376 150 EYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKD 229 (404)
T ss_pred eccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHH
Confidence 5543 278889888852 23678888999999999986 5678888999999999999987544321
Q ss_pred --hh---c-cC-CcEEEeccccccccccCceEEEE---EeChHHHHHHH----HHHHHhCCCchHHHHHHHHHhhH----
Q 012321 343 --AL---S-LG-ADLVLHSATKFIGGHNDVLAGSI---SGSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMK---- 404 (466)
Q Consensus 343 --pl---~-~g-aDivv~S~sK~lgG~gdv~gG~v---vg~~eli~~l~----~~~~~~G~~ls~~~A~l~lrgL~---- 404 (466)
+. . .+ .-+++.|+||.++.+|. +.||+ ++++++++++. +.......+.+.+.++.+...++
T Consensus 230 ~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl-RvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 308 (404)
T PTZ00376 230 AYAIRLFAERGVEFLVAQSFSKNMGLYGE-RIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPEL 308 (404)
T ss_pred HHHHHHHHhcCCcEEEEEeCCCccccccc-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHH
Confidence 11 1 11 24899999999998885 46776 57877665543 32222223334444443333222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 405 ------TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 405 ------tl~~R~e~~~~na~~La~~L~~~p 428 (466)
.+....+++.++++.+.+.|+++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 338 (404)
T PTZ00376 309 RAEWLSELKEMSGRIQNMRQLLYDELKALG 338 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233334566788888999998863
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=175.85 Aligned_cols=239 Identities=23% Similarity=0.300 Sum_probs=170.7
Q ss_pred CChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHH
Q 012321 186 KKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF 265 (466)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~ 265 (466)
++.+++........+.-.|+ .++.+.+|++++++++|.+.++++.+|+.|+.++++++++|++.||+..+.|......
T Consensus 7 ~~~~m~~a~~~a~~gd~~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ 84 (290)
T PF01212_consen 7 PTPAMLEAMAAANVGDDAYG--EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDET 84 (290)
T ss_dssp S-HHEEHHHHHTTSB-CCTT--SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSST
T ss_pred CCHHHHHHHHccccCCcccC--CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeecc
Confidence 45554444433333333465 6899999999999999999999999999999999999999999999988866532211
Q ss_pred HHhhcccCCcEEEEeCC-----CCHHHHHHhccC-----CCceEEEEeCCCCCC-cccc---cHHHHHHHHHhcCCEEEE
Q 012321 266 IETVLPKMGITATVIDP-----ADMEGLEAALNN-----NNVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCI 331 (466)
Q Consensus 266 ~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~-----~~tklV~lesPsNPt-G~v~---dl~~I~ela~~~gillIv 331 (466)
- ......|.++..+.. .|+++|++.+.. .++++|++|+|+|.. |.++ ++++|.++||++|+.|++
T Consensus 85 g-a~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhm 163 (290)
T PF01212_consen 85 G-AIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHM 163 (290)
T ss_dssp T-HHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEE
T ss_pred c-hhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEE
Confidence 0 001124666665532 479999998865 348999999999874 7776 477889999999999999
Q ss_pred eCCCC---C---CCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchH---HHH---H--
Q 012321 332 DGTFA---T---PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP---NAA---Y-- 397 (466)
Q Consensus 332 D~t~a---~---~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~---~~A---~-- 397 (466)
|.+-. . ......+..++|++..|++|.++.+. |++++++++++++.+.+++.+|+.+.. ..+ |
T Consensus 164 DGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~ 240 (290)
T PF01212_consen 164 DGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQF 240 (290)
T ss_dssp EETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred ehhhHHHhhhcccccHHHHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhH
Confidence 99931 1 11123344689999999999999875 899999999988877777777765432 222 1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012321 398 LIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 398 l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V 430 (466)
..++.++....++.+..+++++|++.|+..+.+
T Consensus 241 ~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~~ 273 (290)
T PF01212_consen 241 AALRALELWLERARHANAMAKRLAAGLEALGGV 273 (290)
T ss_dssp HHHCHEECSHHHHHCHHHHHHCHHHCHHEECEE
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 233344444567778889999999999998765
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-18 Score=173.28 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=150.7
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all---~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
....+++++.+++++|.+ +.+++++|++++.+++.+++ ++||+|++....|++....+. .++..|+++..++.
T Consensus 41 ~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~ 119 (379)
T TIGR03402 41 GKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQ-HLEKQGYKVTYLPVD 119 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHH-HHHHcCCEEEEEccC
Confidence 345678889999999973 45666677799998887764 467899999999987655443 34457888887753
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK 357 (466)
.|+++++++++++ +++|++++++||||.+.|+++|.++|+++|+++++|++++.+.. .+..++++|+++.|.+|
T Consensus 120 ~~g~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K 198 (379)
T TIGR03402 120 EEGRLDLEELRAAITDD-TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK 198 (379)
T ss_pred CCCcCCHHHHHHhcCCC-cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHH
Confidence 4799999999874 99999999999999999999999999999999999999876533 33445789999999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHH-------HHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHc
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~-------~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+++++| .|+++.+++.. +.... ....++.+....+.+...+ +.++...+++.+.++.+.+.|++
T Consensus 199 ~~gp~G---~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 273 (379)
T TIGR03402 199 LHGPKG---VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA 273 (379)
T ss_pred cCCCCc---eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 665554 56776665431 11000 0011222222222122222 23344445566677788888875
Q ss_pred -CCCcEE
Q 012321 427 -HPKVKR 432 (466)
Q Consensus 427 -~p~V~~ 432 (466)
.|.++.
T Consensus 274 ~~~~~~~ 280 (379)
T TIGR03402 274 RIPDARL 280 (379)
T ss_pred hCCCEEE
Confidence 666543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=173.63 Aligned_cols=210 Identities=16% Similarity=0.215 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhh----CC-----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 212 TVVVEEKMSALE----GA-----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~-----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
...|++.+|+++ |. ++.|++++|. +|+.+++.+++.|||.|+++.|.|++....+. ...|+++..++
T Consensus 97 ~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~---~~~g~~vv~v~ 173 (447)
T PLN02607 97 LKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRTGVKIVPIH 173 (447)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH---hcCCcEEEEEe
Confidence 345555555554 31 3456666665 89999999999999999999999998654332 13466665553
Q ss_pred C-------CCHHHHHHhccC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012321 282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----- 341 (466)
Q Consensus 282 ~-------~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----- 341 (466)
. .|++++++++++ .++|+|++++|+||||.+++ +++|.++|+++++++|+||+|+...+.
T Consensus 174 ~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~ 253 (447)
T PLN02607 174 CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFV 253 (447)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcc
Confidence 2 478889888763 25899999999999999997 678888999999999999998753321
Q ss_pred chhc----c------CCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------
Q 012321 342 KALS----L------GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------ 404 (466)
Q Consensus 342 ~pl~----~------gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~------ 404 (466)
..+. . ..-+++.|+||.|+.+| .+.|++++ ++++++.++..... + ..+.....++...|+
T Consensus 254 S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~~~~-~-~~s~~~q~~~~~~L~d~~~~~ 330 (447)
T PLN02607 254 SVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSF-T-LVSSQTQHLLASMLSDEEFTE 330 (447)
T ss_pred cHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHHHHHhhc-C-CCCHHHHHHHHHHhCCchhHH
Confidence 1111 1 12378899999998887 56789887 66777776655332 2 123333332222221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 -TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 -tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+....++..++.+.+.+.|+++
T Consensus 331 ~~l~~~r~~l~~~~~~~~~~L~~~ 354 (447)
T PLN02607 331 NYIRTNRERLRKRYEMIVQGLRRA 354 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22333445566777888888875
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=172.68 Aligned_cols=213 Identities=12% Similarity=0.139 Sum_probs=136.9
Q ss_pred chhHHHHHHHHHhhh---CC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCc--------
Q 012321 209 NPTTVVVEEKMSALE---GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI-------- 275 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~---g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi-------- 275 (466)
.+....|++++++++ +. ++.|++++|+ +++..+ ..++.+||+|++++|+|......+ +..|+
T Consensus 74 ~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~~ 148 (402)
T TIGR03542 74 EQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSN----VMAGRAGVLDDDG 148 (402)
T ss_pred CCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHH----HHcCCcccccccc
Confidence 455678888888864 32 4556666776 788764 567789999999999999865433 33455
Q ss_pred ---EEEEeCCCCHHHHHHhcc-CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh
Q 012321 276 ---TATVIDPADMEGLEAALN-NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL 344 (466)
Q Consensus 276 ---~v~~vd~~D~e~Le~ai~-~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl 344 (466)
++..++..+.+.+...+. ..++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .++
T Consensus 149 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~ 228 (402)
T TIGR03542 149 RYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSI 228 (402)
T ss_pred ccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcch
Confidence 665554321111111111 124899999999999999997 778999999999999999998753321 111
Q ss_pred -cc----CCcEEEeccccccccccCceEEEEEeChHHH--------HHHHHHHHHhCCCchHHHHHHHHHh-----hHHH
Q 012321 345 -SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLV--------TQIRNLHHVLGGALNPNAAYLIIRG-----MKTL 406 (466)
Q Consensus 345 -~~----gaDivv~S~sK~lgG~gdv~gG~vvg~~eli--------~~l~~~~~~~G~~ls~~~A~l~lrg-----L~tl 406 (466)
.. ...|++.|+||.++.+| ++.||++++++++ +.+...........+.....++... .+.+
T Consensus 229 ~~~~~~~~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 307 (402)
T TIGR03542 229 FEIPGAKECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPI 307 (402)
T ss_pred hhCCCCcccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHH
Confidence 11 12477899999999887 4679999998876 2221111111222333333222222 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 012321 407 HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~ 427 (466)
....+...++.+.+.+.|+++
T Consensus 308 ~~~~~~~~~~~~~~~~~L~~~ 328 (402)
T TIGR03542 308 LEAISYYMENARILRKALEAA 328 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444456677788888888875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=151.08 Aligned_cols=156 Identities=23% Similarity=0.271 Sum_probs=127.4
Q ss_pred HHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC-----
Q 012321 212 TVVVEEKMSALE--GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD----- 284 (466)
Q Consensus 212 ~~~Lee~lA~l~--g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D----- 284 (466)
.+++++.+++++ +.+..+++++|++|+.+++.++.++|++|++.++.|++... ..+...|.++..++..+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ 78 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG 78 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence 468999999999 78889999999999999999998889999999999998763 23455677777765321
Q ss_pred H--HHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----chhccCCcEEEeccccc
Q 012321 285 M--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGADLVLHSATKF 358 (466)
Q Consensus 285 ~--e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~----~pl~~gaDivv~S~sK~ 358 (466)
. +.+++.....++++|++++|+|++|...|+++|.++|+++|+++|+|+++..+... .+...++|+++.|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~ 158 (170)
T cd01494 79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN 158 (170)
T ss_pred hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence 1 24544443345999999999999999999999999999999999999998765543 35566899999999999
Q ss_pred cccccCceEEEEEeC
Q 012321 359 IGGHNDVLAGSISGS 373 (466)
Q Consensus 359 lgG~gdv~gG~vvg~ 373 (466)
+++++ +|+++.+
T Consensus 159 ~~~~~---~G~l~~~ 170 (170)
T cd01494 159 LGGEG---GGVVIVK 170 (170)
T ss_pred cCCCc---eEEEEeC
Confidence 99854 7888764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-17 Score=170.34 Aligned_cols=212 Identities=18% Similarity=0.195 Sum_probs=150.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
+.+...+||+.+++++|.+.++++.+|++|+..+++++++|||.| ++++.|..+...+. ..|.+..+++.
T Consensus 51 ~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~----~~Ga~pv~v~i~~~~~ 125 (431)
T cd00617 51 GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIE----ANGAVPVDLVIDEAHD 125 (431)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHH----hCCCEeEEEecccccc
Confidence 556788999999999999999999999999999999999999987 57777877654332 23433333321
Q ss_pred ----------CCHHHHHHhccCC---CceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC--------
Q 012321 283 ----------ADMEGLEAALNNN---NVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT-------- 337 (466)
Q Consensus 283 ----------~D~e~Le~ai~~~---~tklV~lesPsNPt-G~v~d---l~~I~ela~~~gillIvD~t~a~-------- 337 (466)
.|+++|+++|+++ ++++|++++|+||+ |.+.+ +++|.++|++||++||.|++...
T Consensus 126 ~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~ 205 (431)
T cd00617 126 AQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKE 205 (431)
T ss_pred cccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhc
Confidence 5799999999853 38899999999998 88885 56789999999999999999431
Q ss_pred ---CCccchh-c------cCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHH-----hCCCchHHHHHHHHH
Q 012321 338 ---PLNQKAL-S------LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----LGGALNPNAAYLIIR 401 (466)
Q Consensus 338 ---~~~~~pl-~------~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~-----~G~~ls~~~A~l~lr 401 (466)
++...++ + ...|.+..|++|.+..+ +||++++++ +++++++..... ..+.++......+..
T Consensus 206 r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~ 282 (431)
T cd00617 206 REEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQ 282 (431)
T ss_pred ccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHH
Confidence 1222221 1 14788888888877765 489999986 688888754321 112233332222222
Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012321 402 GMKTL--HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 402 gL~tl--~~R~e~~~~na~~La~~L~~~ 427 (466)
+|+.. ...+++..+++++|++.|++.
T Consensus 283 gL~e~~~~~~l~~~~~~r~~l~~~L~~~ 310 (431)
T cd00617 283 GLREAVEEDYLRHRVEQVRYLGDRLDEA 310 (431)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence 44331 344566666778899999976
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=168.61 Aligned_cols=215 Identities=17% Similarity=0.193 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHhhhCCC---c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGAE---S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
...+++++.+++++|.+ + .+++++|+.++..++.++..+||+|++..+.|.+.. +...++..|+++..++.
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~ 114 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGED 114 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCC
Confidence 36889999999999973 3 446678899999999999999999999887776643 22445667887777643
Q ss_pred --CCHHHHHHhccCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEeccccc
Q 012321 283 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF 358 (466)
Q Consensus 283 --~D~e~Le~ai~~~-~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~ 358 (466)
.|+++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|+++..+. ..+...+++|+++.|++|+
T Consensus 115 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~ 194 (368)
T PRK13479 115 EPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKC 194 (368)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccc
Confidence 4789999988642 36789999999999999999999999999999999998765432 2233356899999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHHHHh--------------C---CCchHHHHH---HHHHhh-H--HHHHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLHHVL--------------G---GALNPNAAY---LIIRGM-K--TLHLRVQQQNS 415 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~~~~--------------G---~~ls~~~A~---l~lrgL-~--tl~~R~e~~~~ 415 (466)
+.|+.+ .|+++.++++++++......+ + .+.+....+ .++..+ + .++.+.+++.+
T Consensus 195 l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~ 272 (368)
T PRK13479 195 IEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYAN 272 (368)
T ss_pred cccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 866542 499999998887765422110 0 012211111 122222 1 24556677888
Q ss_pred HHHHHHHHHHcCC
Q 012321 416 TALRMAKILEAHP 428 (466)
Q Consensus 416 na~~La~~L~~~p 428 (466)
.++.+.+.|++++
T Consensus 273 ~~~~l~~~L~~~g 285 (368)
T PRK13479 273 NQRTLVAGMRALG 285 (368)
T ss_pred HHHHHHHHHHHcC
Confidence 8888989988863
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=171.55 Aligned_cols=210 Identities=14% Similarity=0.152 Sum_probs=136.9
Q ss_pred HHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhcc-----CCCEEEE-cCCCccchHHHHHh--hcccCCcE
Q 012321 213 VVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVP-----AGGHIVT-TTDCYRKTRIFIET--VLPKMGIT 276 (466)
Q Consensus 213 ~~Lee~lA~l~----g~---e~~v~~~SG~-aAi~~al~all~-----pGD~VLv-~~~~y~~t~~~~~~--~l~~~gi~ 276 (466)
..|++.|++++ |. ++.|++++|+ +++.+++.+++. +||.|++ .+|+|+........ .+...+..
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~ 156 (416)
T PRK09440 77 DELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPN 156 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccc
Confidence 45555555544 42 4566677776 899999988885 6899999 69999985542210 11222222
Q ss_pred EEEeC------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c-
Q 012321 277 ATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K- 342 (466)
Q Consensus 277 v~~vd------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~- 342 (466)
+..++ ..|+++|+ +.+ ++++|++++|+||||.+++ +++|+++|+++++++|+||+|..+... .
T Consensus 157 ~~~~~~~~~~~~~d~~~l~--~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~ 233 (416)
T PRK09440 157 IELLPEGQFKYHVDFEHLH--IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEA 233 (416)
T ss_pred cccccccccccCCCHHHcc--cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhc
Confidence 22221 24677776 344 4899999999999999997 667888899999999999999753211 1
Q ss_pred -hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH--H----HH-HHHHHH
Q 012321 343 -ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--L----HL-RVQQQN 414 (466)
Q Consensus 343 -pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t--l----~~-R~e~~~ 414 (466)
+...+.-|++.|+||+ +.+| .+.||+++++++++++...........+.+...++...++. + .. ..+...
T Consensus 234 ~~~~~~~vI~~~SfSK~-~~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (416)
T PRK09440 234 TPLWNPNIILCMSLSKL-GLPG-VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYR 311 (416)
T ss_pred CccccCCeEEEeccccc-CCCc-ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 1112234889999996 6666 56899999999999998877666555555555544444322 1 11 122234
Q ss_pred HHHHHHHHHHHcC
Q 012321 415 STALRMAKILEAH 427 (466)
Q Consensus 415 ~na~~La~~L~~~ 427 (466)
++.+.+.+.|+++
T Consensus 312 ~r~~~~~~~L~~~ 324 (416)
T PRK09440 312 QKVQLAIALLRRY 324 (416)
T ss_pred HHHHHHHHHHHHh
Confidence 4555566666543
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=167.75 Aligned_cols=214 Identities=18% Similarity=0.194 Sum_probs=151.5
Q ss_pred hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
...+.+++.+++++|++ ..++++||++++..++.+++.+||++++..+.+.+.. +...++..|+++..++.
T Consensus 35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~ 112 (363)
T TIGR02326 35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEV 112 (363)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence 45778899999999974 2456678889999999999889988777655554432 22445667877776643
Q ss_pred --CCHHHHHHhccCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEeccccc
Q 012321 283 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF 358 (466)
Q Consensus 283 --~D~e~Le~ai~~~-~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~ 358 (466)
.|+++++++++++ ++++|.+.+++||||.+.|+++|.++||++|+++++|++++.+. ..+...+++|+++.|++|+
T Consensus 113 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~ 192 (363)
T TIGR02326 113 EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKC 192 (363)
T ss_pred CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccc
Confidence 4789999998753 36788888999999999999999999999999999999876543 2334456899999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHH------------HH---hC---CCchHHHHHHHHHhhHH------HHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLH------------HV---LG---GALNPNAAYLIIRGMKT------LHLRVQQQN 414 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~------------~~---~G---~~ls~~~A~l~lrgL~t------l~~R~e~~~ 414 (466)
++|+.+ .|+++.+++.++++.... .. .+ .+.+....+.+...++. ++.+.+++.
T Consensus 193 l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~ 270 (363)
T TIGR02326 193 IQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQ 270 (363)
T ss_pred cccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 976642 489999888776643100 00 01 01222222222222222 345667788
Q ss_pred HHHHHHHHHHHcC
Q 012321 415 STALRMAKILEAH 427 (466)
Q Consensus 415 ~na~~La~~L~~~ 427 (466)
+++.++.+.|+++
T Consensus 271 ~~~~~l~~~L~~~ 283 (363)
T TIGR02326 271 QNQKTLVAGMRAL 283 (363)
T ss_pred HHHHHHHHHHHHc
Confidence 8888899988876
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=167.68 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=146.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc------------CC--CEEEEcCCCccchH
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP------------AG--GHIVTTTDCYRKTR 263 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~------------pG--D~VLv~~~~y~~t~ 263 (466)
|..+.......+++.+++++++|.+ +.+++++|++|+..++.++.. +| +.|+++++.|....
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~ 109 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE 109 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH
Confidence 3444333444555666677777864 688888888999998887743 33 47888888888754
Q ss_pred HHHHhhcccCCcEEEEeC-----CCCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeC
Q 012321 264 IFIETVLPKMGITATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333 (466)
Q Consensus 264 ~~~~~~l~~~gi~v~~vd-----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~ 333 (466)
... ...|+++..++ ..|+++|++++++. ++++|+++.|+||+|.+.|+++|+++|+++|+++++|+
T Consensus 110 ~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~ 185 (345)
T cd06450 110 KAA----AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA 185 (345)
T ss_pred HHH----HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec
Confidence 433 22356665554 34899999998750 38899999999999999999999999999999999999
Q ss_pred CCCCCCcc-c---h--h-ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh--hH
Q 012321 334 TFATPLNQ-K---A--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG--MK 404 (466)
Q Consensus 334 t~a~~~~~-~---p--l-~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg--L~ 404 (466)
+|+.+... . . . ..++|++..|+||+++++. ..|+++.+ ....|.+++. ..
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~-------------------~~~~~~~l~~l~~~ 244 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR-------------------ALKLWATLRRFGRD 244 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH-------------------HHHHHHHHHHHhHH
Confidence 98765421 1 1 0 1268999999999987764 24555433 2223333322 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 405 TLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 405 tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
.++.++++..+.++++.+.|++.+.+..+
T Consensus 245 g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (345)
T cd06450 245 GYGEHIDRIVDLAKYLAELIRADPGFELL 273 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 46677888888999999999998876443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=165.23 Aligned_cols=214 Identities=17% Similarity=0.239 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
+..+.+++.+++++|.+ ..+++++|++++..++.+++.+||++++..+.+.+.. +...++..|.++..++
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~ 108 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY 108 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence 67889999999999974 2446789999999999999988888776655544321 2233455677766654
Q ss_pred -CCCHHHHHHhccCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEeccccc
Q 012321 282 -PADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF 358 (466)
Q Consensus 282 -~~D~e~Le~ai~~~-~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~ 358 (466)
..|+++++++++++ ++++|++.+++|++|.+.|+++|.++|+++|+++|+|++++.+. ......+++|+++.|++|+
T Consensus 109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~ 188 (355)
T TIGR03301 109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC 188 (355)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence 23789999998642 36788888999999999999999999999999999999876443 2333456899999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHH---------------HH--hCCCchHHHHHHHHHhhHH------HHHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLH---------------HV--LGGALNPNAAYLIIRGMKT------LHLRVQQQNS 415 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~---------------~~--~G~~ls~~~A~l~lrgL~t------l~~R~e~~~~ 415 (466)
++|+.. .|++++++++++.++... .. ...+.+....+.+...++. ++.++++.++
T Consensus 189 l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~ 266 (355)
T TIGR03301 189 LEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRR 266 (355)
T ss_pred cccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 865542 489999999887765210 00 0112233322222222322 4556677788
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
+++.+.+.|+++
T Consensus 267 ~~~~~~~~L~~~ 278 (355)
T TIGR03301 267 NRELLVDGLRAL 278 (355)
T ss_pred HHHHHHHHHHHc
Confidence 889999999876
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-17 Score=167.47 Aligned_cols=211 Identities=14% Similarity=0.125 Sum_probs=136.5
Q ss_pred HHHHHHHHHhhh----C---CCcE--EEeCCHH-HHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 212 TVVVEEKMSALE----G---AEST--VIMASGM-SASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 212 ~~~Lee~lA~l~----g---~e~~--v~~~SG~-aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
...|++++++++ + .++. +++|+|. +|+.+++..+ +.+||+|++++|+|+.....+ +..|+++..
T Consensus 71 ~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~----~~~g~~~v~ 146 (396)
T PRK09257 71 LAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIF----EAAGLEVKT 146 (396)
T ss_pred CHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHH----HHcCCcEEE
Confidence 445556655553 2 1333 3666665 9999988655 589999999999999866444 345666554
Q ss_pred eC-------CCCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----c
Q 012321 280 ID-------PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K 342 (466)
Q Consensus 280 vd-------~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~ 342 (466)
++ ..|+++++++++. .+++++++++|+||||.+++ +++|+++|+++++++|+|++|...... .
T Consensus 147 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~ 226 (396)
T PRK09257 147 YPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAY 226 (396)
T ss_pred EeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHH
Confidence 43 2478899888752 22567777999999999986 577888999999999999998754321 1
Q ss_pred hh---c-c-CCcEEEeccccccccccCceEEEEE--e-ChHHH----HHHHHHHHHhCCCchHHHHHHHHHhh-------
Q 012321 343 AL---S-L-GADLVLHSATKFIGGHNDVLAGSIS--G-SGKLV----TQIRNLHHVLGGALNPNAAYLIIRGM------- 403 (466)
Q Consensus 343 pl---~-~-gaDivv~S~sK~lgG~gdv~gG~vv--g-~~eli----~~l~~~~~~~G~~ls~~~A~l~lrgL------- 403 (466)
++ . . ..-|++.|+||.++.+|. +.||++ . +++.+ .+++..........+.+.+.++.+.+
T Consensus 227 ~~~~~~~~~~~vi~i~SfSK~~~~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 305 (396)
T PRK09257 227 GLRAFAAAGLELLVASSFSKNFGLYGE-RVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRA 305 (396)
T ss_pred HHHHHHhcCCcEEEEEEcCCcCccccc-cceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHH
Confidence 11 1 1 134889999999998775 567776 2 44433 33333332222223343333222221
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 404 ---KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 404 ---~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.+....+++.++++.+.+.|+++
T Consensus 306 ~~~~~~~~~r~~~~~rr~~l~~~L~~~ 332 (396)
T PRK09257 306 EWEAELEEMRERIKAMRQLLVEALKAK 332 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223334556677888888888876
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=171.53 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=154.3
Q ss_pred HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC----C
Q 012321 212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----D 284 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~----D 284 (466)
..++++.+++++|.+ +.+++++|++++..+++++. .+||+|+++++.|+.....+.......|+++..++.. |
T Consensus 114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d 193 (447)
T PRK00451 114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD 193 (447)
T ss_pred HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence 444557789999974 34456666688888888874 7999999999999987766655555678888877643 8
Q ss_pred HHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEE--eCCCCCCCccchhccCCcEEEeccccc----
Q 012321 285 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHSATKF---- 358 (466)
Q Consensus 285 ~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIv--D~t~a~~~~~~pl~~gaDivv~S~sK~---- 358 (466)
+++++++++++ |++|++++| |+||.+.|+++|.++||++|+++++ |.. ..+....+.++|+|+++.|.+|+
T Consensus 194 ~~~l~~~i~~~-t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~ 270 (447)
T PRK00451 194 LEALEAAVDDD-TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPL 270 (447)
T ss_pred HHHHHHhcCCC-eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCC
Confidence 99999999875 999999999 8999999999999999999999998 544 23333445678999999977775
Q ss_pred -cccccCceEEEEEeChHHHHHHH----------------------------HHHHHhCCC-chH---HHHHHHHH--hh
Q 012321 359 -IGGHNDVLAGSISGSGKLVTQIR----------------------------NLHHVLGGA-LNP---NAAYLIIR--GM 403 (466)
Q Consensus 359 -lgG~gdv~gG~vvg~~eli~~l~----------------------------~~~~~~G~~-ls~---~~A~l~lr--gL 403 (466)
++|++ +|+++.++++++.+. ..+...... ..+ ..++..++ +-
T Consensus 271 ~~~Gpg---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~ 347 (447)
T PRK00451 271 SFGGPY---LGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGP 347 (447)
T ss_pred CCCCCC---chHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCH
Confidence 55553 788888888877631 111011111 111 22322222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 404 KTLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 404 ~tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
+.++.+.+++.++++.+.+.|++++.++
T Consensus 348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~ 375 (447)
T PRK00451 348 EGLRELAEQNHQKAHYLAERLAEIGGVE 375 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEE
Confidence 3466677888899999999999988664
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-17 Score=165.57 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=139.6
Q ss_pred hHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----
Q 012321 211 TTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----- 283 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~----- 283 (466)
....|++.+++++|. ++.|++++|+ +++..++. +.+| .+++..|+|.... ..++..|+++..++..
T Consensus 59 g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~v~~~~~~~~ 131 (349)
T PRK07908 59 DERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPE----AALRAAGIPVHRVVLDPPFRL 131 (349)
T ss_pred chHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHH----HHHHHcCCEEEeeccCcccCc
Confidence 567899999999985 4566666665 89888776 5665 5667789987744 3345567777666432
Q ss_pred CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--hh---ccCCcEEEeccccc
Q 012321 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--AL---SLGADLVLHSATKF 358 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~--pl---~~gaDivv~S~sK~ 358 (466)
|++. +++ ++++|++++|+||||.+++.++|.++|++ +.++|+|++|...+... ++ .....+++.|+||.
T Consensus 132 d~~~----l~~-~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~ 205 (349)
T PRK07908 132 DPAA----VPD-DADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKT 205 (349)
T ss_pred ChhH----hcc-CCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccc
Confidence 3443 344 48999999999999999999999999964 78899999986432111 11 22234788899999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH-HH--hhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI-IR--GMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~-lr--gL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++.+| ++.||+++++++++.++.....+........+... +. ..+.+....++..++++.+.+.|+++
T Consensus 206 ~~l~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 276 (349)
T PRK07908 206 WSLAG-LRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV 276 (349)
T ss_pred cCCcc-ceeeeeecCHHHHHHHHhcCCCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98676 45899999999999887655433222222222111 11 23445555666778888888999886
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=167.52 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=136.5
Q ss_pred hHHHHHHHHHhhhCC-------CcE-----EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 211 TTVVVEEKMSALEGA-------EST-----VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~-------e~~-----v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
...+|++.+++++.. ++. ++.++|..++...+..++.|||+|++++|.|+.....+ +..|.++.
T Consensus 92 G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~----~~~g~~~~ 167 (423)
T PLN02397 92 GLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIF----RDAGVPVR 167 (423)
T ss_pred CCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHH----HHcCCeEE
Confidence 345666666665421 122 23344554555666666679999999999999865433 34566655
Q ss_pred EeC-------CCCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----
Q 012321 279 VID-------PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---- 342 (466)
Q Consensus 279 ~vd-------~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~---- 342 (466)
.++ ..|++.+++.+.. .+++++++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 168 ~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~ 247 (423)
T PLN02397 168 TYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDAD 247 (423)
T ss_pred EeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhh
Confidence 542 2478877777642 34889999999999999986 5678888999999999999987654311
Q ss_pred --h---hc-cC-CcEEEeccccccccccCceEEEEE---eChHHHHHHH----HHHHHhCCCchHHHHHHHHHhhH----
Q 012321 343 --A---LS-LG-ADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMK---- 404 (466)
Q Consensus 343 --p---l~-~g-aDivv~S~sK~lgG~gdv~gG~vv---g~~eli~~l~----~~~~~~G~~ls~~~A~l~lrgL~---- 404 (466)
+ +. .+ .-|++.|+||.++.+|++ .||++ +++++++++. ........+.+...++++...|+
T Consensus 248 ~~~~~~~~~~~~~vI~~~SfSK~~~~~G~R-vG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~ 326 (423)
T PLN02397 248 AQSVRMFVEDGHEILVAQSYAKNMGLYGER-VGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPEL 326 (423)
T ss_pred hHHHHHHHhcCCcEEEEEECcccCCCcccc-ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHH
Confidence 1 11 12 248899999999988865 57763 4566555433 33322222333444443332222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 ------TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 ------tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+....++..++++.+.+.|+++
T Consensus 327 ~~~~~~~~~~~~~~~~~rr~~l~~~L~~~ 355 (423)
T PLN02397 327 FSEWTKELKGMADRIISMRQKLYDALEAR 355 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13344556778888899999886
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=179.30 Aligned_cols=212 Identities=16% Similarity=0.121 Sum_probs=150.7
Q ss_pred hHHHHHHHHHhhhCCC----cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 211 TTVVVEEKMSALEGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e----~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.++++.+++++.+|.+ +.|++++|+ +++..++.+++++||+|+++.|+|+.....+ +..|.++..++.
T Consensus 735 lr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a----~~~Ga~vv~Vpl~~e 810 (1082)
T PLN02672 735 PRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAA----KFLKANFRRIPTKSS 810 (1082)
T ss_pred HHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHH----HHcCCEEEEEecccc
Confidence 4789999999988752 367777787 7788888999999999999999999866443 345666665542
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCC-CCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---------ch-h
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPT-NPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---------KA-L 344 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPs-NPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~---------~p-l 344 (466)
.|.+++++++++.+.++|++++|+ ||||.+++ +++|+++|++||++||+||+|....+. .+ .
T Consensus 811 ~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l 890 (1082)
T PLN02672 811 DGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSIL 890 (1082)
T ss_pred cCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHH
Confidence 257889999865335689999997 99999985 678888899999999999998632221 00 1
Q ss_pred -cc------CCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCC-chHHHHHHHHHh--------hHHHH
Q 012321 345 -SL------GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA-LNPNAAYLIIRG--------MKTLH 407 (466)
Q Consensus 345 -~~------gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~-ls~~~A~l~lrg--------L~tl~ 407 (466)
.. ..-+++.|+||.++.+|. +.||++++ +++++.++......+.. .+.+.+..++.. .+.+.
T Consensus 891 ~~~~~~sks~nVIvL~SfSKkf~lpGL-RIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~ 969 (1082)
T PLN02672 891 SRLKSSNPSFAVALLGGLSTELLSGGH-EFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVA 969 (1082)
T ss_pred HHhccccCCceEEEEeCcHHhhccHHH-HheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 11 123788899999999885 57888886 45888887754433322 223332222211 12344
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 012321 408 LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~ 427 (466)
...+...++++.+.+.|+++
T Consensus 970 e~r~~Lk~rRd~L~e~L~~~ 989 (1082)
T PLN02672 970 EQKKILKSRAERLKETLEAC 989 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 44556778889999999886
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=160.60 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=150.6
Q ss_pred hHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhcc----CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 211 TTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~----pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
..+++++++++++|.+ ..+++++|++++..++.++.. +||+|++.++.|.... ..++..|+++..++.
T Consensus 60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~ 135 (371)
T PRK13520 60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDD 135 (371)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCC
Confidence 3478999999999974 457777888998888776643 5799999999887643 334556778777653
Q ss_pred ---CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---cc-----hhccCCcEE
Q 012321 283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK-----ALSLGADLV 351 (466)
Q Consensus 283 ---~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~---~~-----pl~~gaDiv 351 (466)
.|+++|+++++++ +++|++.+++|++|.+.|+++|.++|+++|+++++|++|+.+.. .. ....++|.+
T Consensus 136 ~~~~d~~~l~~~i~~~-~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~ 214 (371)
T PRK13520 136 DYRVDVKAVEDLIDDN-TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSI 214 (371)
T ss_pred CCcCCHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceE
Confidence 4899999999875 77777788999999999999999999999999999999875421 11 112478999
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhC--------CC---chHHHHHHHHHhh--HHHHHHHHHHHHHHH
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--------GA---LNPNAAYLIIRGM--KTLHLRVQQQNSTAL 418 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G--------~~---ls~~~A~l~lrgL--~tl~~R~e~~~~na~ 418 (466)
..|.+|+..++. ..|++++.++++++.+......+. ++ .....++.++..+ +.++.+.++..++++
T Consensus 215 ~~s~~K~~~a~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~ 293 (371)
T PRK13520 215 TIDPHKMGLAPI-PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTR 293 (371)
T ss_pred EECCccccCccC-CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHH
Confidence 999999876443 235566667777776642211110 11 1122233333332 234557788888999
Q ss_pred HHHHHHHcCCCcE
Q 012321 419 RMAKILEAHPKVK 431 (466)
Q Consensus 419 ~La~~L~~~p~V~ 431 (466)
++.+.|++. ++.
T Consensus 294 ~l~~~L~~~-g~~ 305 (371)
T PRK13520 294 WLAEELKER-GFE 305 (371)
T ss_pred HHHHHHHhC-CCE
Confidence 999999876 443
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=164.44 Aligned_cols=209 Identities=16% Similarity=0.124 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------------cCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------------PAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--------------~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
...++||++||+++|.+++++++||..|+..++.++. ..+|.|++....|.+...-+...-.+.+.
T Consensus 147 ~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a 226 (476)
T PLN02955 147 TYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNV 226 (476)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCc
Confidence 5678899999999999999999999999988888772 45678888888888866554322122257
Q ss_pred EEEEeCCCCHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------hh
Q 012321 276 TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------AL 344 (466)
Q Consensus 276 ~v~~vd~~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---------pl 344 (466)
++..++..|+++|++.++.. +.++|++|...++.|.+.|+++|.++|++||++||+||+++.+.... .+
T Consensus 227 ~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~ 306 (476)
T PLN02955 227 EVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNC 306 (476)
T ss_pred eEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCC
Confidence 77778899999999888532 35799999999999999999999999999999999999987654322 11
Q ss_pred ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Q 012321 345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALR 419 (466)
Q Consensus 345 ~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~---tl~~R~e~~~~na~~ 419 (466)
....||++.|++|.+|.. ||++++++++++.++.... .+++.+++..+..++..++ +-+.|.++..+|.++
T Consensus 307 ~~di~ii~~TLsKA~G~~----GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~ 382 (476)
T PLN02955 307 EADVDLCVGTLSKAAGCH----GGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKE 382 (476)
T ss_pred CCCCcEEEEeCccchhcc----CceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 124689999999999865 5999999998888875443 2344445443333333332 233455666666655
Q ss_pred HHH
Q 012321 420 MAK 422 (466)
Q Consensus 420 La~ 422 (466)
+.+
T Consensus 383 fr~ 385 (476)
T PLN02955 383 FKA 385 (476)
T ss_pred HHH
Confidence 554
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=163.20 Aligned_cols=211 Identities=18% Similarity=0.134 Sum_probs=147.6
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
.++..+++|++||+++|.+.++++++|+.|+..++..+.++||.|++....|+++...+.. +. +..+. +...|+++
T Consensus 54 ~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~~--~~~~~-~~~~d~~~ 129 (370)
T PRK05937 54 PSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-IS--GWHQS-FRHNDLDH 129 (370)
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-cC--CceEE-ecCCCHHH
Confidence 5678999999999999999999999999888776666667889999888889887665533 22 33343 45678999
Q ss_pred HHHhccC-----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch-----hccC---CcEEEec
Q 012321 288 LEAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----LSLG---ADLVLHS 354 (466)
Q Consensus 288 Le~ai~~-----~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p-----l~~g---aDivv~S 354 (466)
|++.+++ .++.+|++++++|++|.+.|+++|.++|+++|+++++|++++.+..... ..++ .++++.|
T Consensus 130 l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~t 209 (370)
T PRK05937 130 LESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVT 209 (370)
T ss_pred HHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEe
Confidence 9998863 2367888999999999999999999999999999999999986533211 1223 2477899
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHc
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLH----LRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl~----~R~e~~~~na~~La~~L~~ 426 (466)
++|.+|+.| +| +++.+++.+.+..... .+....++.....+...++.+. .+.++..++.+++.+.|..
T Consensus 210 lsK~~g~~G---~~-vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~ 283 (370)
T PRK05937 210 YSKALGSMG---AA-LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS 283 (370)
T ss_pred chhhhhcCc---eE-EEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 999998765 34 4566666555442211 1223344444333333444332 2334555666667666654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=170.92 Aligned_cols=144 Identities=17% Similarity=0.286 Sum_probs=107.5
Q ss_pred EEEeCCH-HHHHHHHHHH-----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-------CCCHHHHHHhccC
Q 012321 228 TVIMASG-MSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-------PADMEGLEAALNN 294 (466)
Q Consensus 228 ~v~~~SG-~aAi~~al~a-----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-------~~D~e~Le~ai~~ 294 (466)
.|++++| ++|+..++.+ +++|||+|++++|.|........ +...++.+..++ ..|.++|++++++
T Consensus 163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~--l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~ 240 (527)
T PRK09275 163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE--LPRYDLEVVHINADEENEWQYPDSELEKLRDP 240 (527)
T ss_pred eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH--HcCCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence 5555555 5899888876 68999999999999998654332 223345544443 2467899998877
Q ss_pred CCceEEEEeCCCCCCccccc---HHHHHHHHHh--cCCEEEEeCCCCCCCc--cchhcc--CCcEEEeccccccccccCc
Q 012321 295 NNVSLFFTESPTNPFLRCVD---VKLVSDLCHK--KGAIVCIDGTFATPLN--QKALSL--GADLVLHSATKFIGGHNDV 365 (466)
Q Consensus 295 ~~tklV~lesPsNPtG~v~d---l~~I~ela~~--~gillIvD~t~a~~~~--~~pl~~--gaDivv~S~sK~lgG~gdv 365 (466)
++|+|++++|+||||.+++ +++|+++|++ ++++||+||+|..... ...... ...|++.|+||+++.+|+.
T Consensus 241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~R 319 (527)
T PRK09275 241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWR 319 (527)
T ss_pred -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhH
Confidence 4999999999999999997 6778888854 5999999999976432 111111 2459999999999999865
Q ss_pred eEEEEEeChH
Q 012321 366 LAGSISGSGK 375 (466)
Q Consensus 366 ~gG~vvg~~e 375 (466)
.||++++++
T Consensus 320 -lG~i~~~~~ 328 (527)
T PRK09275 320 -LGVIALHED 328 (527)
T ss_pred -HhhhhcCch
Confidence 688888775
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=160.71 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=149.5
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc------cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all------~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
....+.+++++++++|.+ ..+++++|++++..++.++. ++||+|+++++.|.+.. ..++..|+++..+
T Consensus 58 ~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v 133 (373)
T TIGR03812 58 KKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYA 133 (373)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEE
Confidence 355688999999999974 45778888888877766553 46799999999887643 3345568887777
Q ss_pred CC-----CCHHHHHHhccCCCce-EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--------cchh--
Q 012321 281 DP-----ADMEGLEAALNNNNVS-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--------QKAL-- 344 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tk-lV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~--------~~pl-- 344 (466)
+. .|+++++++++++ +. ++++ +|+||+|.+.|+++|.++||++|+++|+|++|+.+.. ....
T Consensus 134 ~~~~~~~~d~~~l~~~l~~~-~~~vv~~-~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~ 211 (373)
T TIGR03812 134 PLDEDYTVDVKDVEDLIDDN-TIGIVGI-AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF 211 (373)
T ss_pred eeCCCCCcCHHHHHHHHhhC-cEEEEEE-CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccc
Confidence 53 4899999999775 54 5555 5899999999999999999999999999999864321 0111
Q ss_pred -ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCC--------CchHH---HHHHHHHhh--HHHHHHH
Q 012321 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--------ALNPN---AAYLIIRGM--KTLHLRV 410 (466)
Q Consensus 345 -~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~--------~ls~~---~A~l~lrgL--~tl~~R~ 410 (466)
..|+|.+..|.+|+..++. ..||+++.++++++.++........ +.+.. .++.+++.+ +.++.+.
T Consensus 212 ~~~~~d~~~~s~~K~~~~~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~ 290 (373)
T TIGR03812 212 SLPGVQSITIDPHKMGLSPI-PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIV 290 (373)
T ss_pred cCCCCCEEEECccccCCCcC-CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHH
Confidence 2378999999999754443 2356777888888776422111111 11122 222333322 3345677
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 012321 411 QQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~ 429 (466)
++..++++++.+.|++.+.
T Consensus 291 ~~~~~~~~~l~~~L~~~g~ 309 (373)
T TIGR03812 291 AECMENTRYLVEELKKIGF 309 (373)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 8888999999999998753
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=161.19 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=150.9
Q ss_pred cCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhh---------c
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETV---------L 270 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~---------l 270 (466)
..+|.++...+|+++|+++.+. +.+++++||++|+..++.....+| ++|+..++.|++........ +
T Consensus 79 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 158 (398)
T PRK03244 79 SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPF 158 (398)
T ss_pred cCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCC
Confidence 4567778889999999999874 467778899999999998766666 56777777887743221111 1
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC------c
Q 012321 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL------N 340 (466)
Q Consensus 271 ~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~------~ 340 (466)
...+.++..++..|++++++.+++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+||++...- .
T Consensus 159 ~~~~~~~~~~~~~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~ 237 (398)
T PRK03244 159 EPLPGGVEHVPYGDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFA 237 (398)
T ss_pred CCCCCCceEeCCCCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHh
Confidence 112234455566689999999865 4999999999999999987 8899999999999999999985310 1
Q ss_pred cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHH
Q 012321 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTAL 418 (466)
Q Consensus 341 ~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~ 418 (466)
........|++ +++|.+++ | ...|++++++++++.+...........++..+..++..|+.+. ...++..+..+
T Consensus 238 ~~~~~~~pDi~--t~sK~l~~-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~ 313 (398)
T PRK03244 238 HQHDGVTPDVV--TLAKGLGG-G-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGE 313 (398)
T ss_pred hhhhCCCCCEE--EEchhhhC-C-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11112235765 67899985 3 4578888888888877542222222345555555555554332 34456666777
Q ss_pred HHHHHHHc
Q 012321 419 RMAKILEA 426 (466)
Q Consensus 419 ~La~~L~~ 426 (466)
++.+.|++
T Consensus 314 ~l~~~L~~ 321 (398)
T PRK03244 314 QLRAGIEA 321 (398)
T ss_pred HHHHHHHh
Confidence 78888877
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-16 Score=162.76 Aligned_cols=212 Identities=15% Similarity=0.151 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCHH-HHHHHHHHHhcc---CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASGM-SASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG~-aAi~~al~all~---pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
..+..|++.++++.|.+ .++++++|+ .++.+++.++-. +||+||++...|.++... +...|++..++|.
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kA----i~~~G~~pv~Vd~ 180 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKA----ISTAGFEPRVIET 180 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHH----HHHcCCeEEEeee
Confidence 45778899999999987 799999999 688877776542 689999999988876643 3445666666652
Q ss_pred --------CCHHHHHHhccCC--CceEEEEeCCC-CCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------chhc
Q 012321 283 --------ADMEGLEAALNNN--NVSLFFTESPT-NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALS 345 (466)
Q Consensus 283 --------~D~e~Le~ai~~~--~tklV~lesPs-NPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~------~pl~ 345 (466)
.|+++|+++|++. ++.++++.+|+ .+.|.+.|+++|.++|++||+++|+|++|+..... ....
T Consensus 181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~ 260 (444)
T TIGR03531 181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIK 260 (444)
T ss_pred eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcccc
Confidence 3899999999752 35677776775 45568899999999999999999999999854321 2233
Q ss_pred cC-CcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHH--HhhHHHHHHHHHHHHHHHHHH
Q 012321 346 LG-ADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 ~g-aDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~l--rgL~tl~~R~e~~~~na~~La 421 (466)
.| +|++++|++|++..+++ ||+++. +++++++++............+.+|+.+ .|.+.+...++++.++++.+.
T Consensus 261 ~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~ 338 (444)
T TIGR03531 261 VGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK 338 (444)
T ss_pred ccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 44 69999999999998764 677766 6788887776432221222334455443 466888888999999999999
Q ss_pred HHHHcC
Q 012321 422 KILEAH 427 (466)
Q Consensus 422 ~~L~~~ 427 (466)
+.|++.
T Consensus 339 ~~L~~l 344 (444)
T TIGR03531 339 ELLQKL 344 (444)
T ss_pred HHHHHH
Confidence 988875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=166.52 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=107.0
Q ss_pred EEEeCC-HHHHHHHHHHH-----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------------CCHHHHH
Q 012321 228 TVIMAS-GMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------------ADMEGLE 289 (466)
Q Consensus 228 ~v~~~S-G~aAi~~al~a-----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~------------~D~e~Le 289 (466)
.|++++ |++|+..++.+ ++.|||+|++++|.|+....... +...|+++..++. .|.++++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~--l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~ 234 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE--LPRYDFEVVRIKADEMTEDGTHTWQYPDKELE 234 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH--HhcCCcEEEEeecccccccccccCCCCHHHHH
Confidence 455555 55999888876 68999999999999998654332 2334555544432 3678899
Q ss_pred HhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhc--CCEEEEeCCCCCCCc--cchhcc--CCcEEEeccccccc
Q 012321 290 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLN--QKALSL--GADLVLHSATKFIG 360 (466)
Q Consensus 290 ~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~--gillIvD~t~a~~~~--~~pl~~--gaDivv~S~sK~lg 360 (466)
+++++ ++|+|++++|+||||.+++ +++|+++|+++ ++++|+||+|..... ...... ...|++.|+||+++
T Consensus 235 ~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg 313 (521)
T TIGR03801 235 KLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFG 313 (521)
T ss_pred HhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhcc
Confidence 88876 4999999999999999997 67788889886 899999999876432 111121 23489999999999
Q ss_pred cccCceEEEEEeChH
Q 012321 361 GHNDVLAGSISGSGK 375 (466)
Q Consensus 361 G~gdv~gG~vvg~~e 375 (466)
.+|+. .||++++++
T Consensus 314 ~~G~R-lG~i~~~~~ 327 (521)
T TIGR03801 314 ATGWR-LGTIALHKD 327 (521)
T ss_pred Cchhh-hhhhhcCch
Confidence 98865 688888754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-16 Score=160.50 Aligned_cols=217 Identities=16% Similarity=0.147 Sum_probs=150.1
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------CC-CEEEEcCCCccchH-HHHHhhc-----
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKTR-IFIETVL----- 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~---------pG-D~VLv~~~~y~~t~-~~~~~~l----- 270 (466)
..++...+|+++|+++.+.+.+++++||++|+..++..... +| ++||..+..|++.. ..+...-
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~ 158 (396)
T PRK04073 79 FHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYK 158 (396)
T ss_pred cCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence 45677889999999999888999999999999988876531 34 67888877776633 2221100
Q ss_pred ccCC---cEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc-c-
Q 012321 271 PKMG---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-Q- 341 (466)
Q Consensus 271 ~~~g---i~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~-~- 341 (466)
..++ ..+..++..|++++++.++++ +++|++|.|+||+|.+.+ +++|.++|+++|+++|+||+|..... .
T Consensus 159 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~ 237 (396)
T PRK04073 159 RGFGPMLPGIKKIPYGDLEALKAAITPN-TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK 237 (396)
T ss_pred cCCCCCCCCceEeCCCCHHHHHHhcccC-eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH
Confidence 0011 123445666899999999764 999999999999999876 88999999999999999999864211 1
Q ss_pred ----chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012321 342 ----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS 415 (466)
Q Consensus 342 ----~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~ 415 (466)
.......|+++ ++|.+++++. ..|++++++++++.+...........++..+..++..|+.+. ...++..+
T Consensus 238 ~~~~~~~~~~pdi~~--~sK~lg~gg~-~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~ 314 (396)
T PRK04073 238 LFACDWDNVTPDMYI--LGKALGGGVF-PISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLE 314 (396)
T ss_pred HHHhhhcCCCCCEEE--ecccccCCCC-cceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11222356664 6899998653 468889999998877542221112245666655555555432 23455566
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
..+++.+.|++.
T Consensus 315 ~~~~l~~~L~~l 326 (396)
T PRK04073 315 LGEYFKEQLKEI 326 (396)
T ss_pred HHHHHHHHHHhh
Confidence 777888888764
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=152.89 Aligned_cols=223 Identities=22% Similarity=0.319 Sum_probs=151.8
Q ss_pred CCCccCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH------hh
Q 012321 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TV 269 (466)
Q Consensus 200 ~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~---~~SG~aAi~~al~all~pGD~VLv~~-~~y~~t~~~~~------~~ 269 (466)
.+|.|+ +.-++.||+..|+.+|+|++++ +.||+.||.++|..+++|||+++... .-|......+. ..
T Consensus 47 TGYGY~---D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GS 123 (403)
T PF06838_consen 47 TGYGYD---DIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGS 123 (403)
T ss_dssp -TT-TT----HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSS
T ss_pred CcCCCC---CccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCC
Confidence 466666 6679999999999999999998 68999999999999999999998644 44655444441 23
Q ss_pred cccCCcEEEEeCC-----CCHHHHHHhccCCCceEEEEeCCC----CCCcccccHHHHHHHHHh--cCCEEEEeCCCCCC
Q 012321 270 LPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATP 338 (466)
Q Consensus 270 l~~~gi~v~~vd~-----~D~e~Le~ai~~~~tklV~lesPs----NPtG~v~dl~~I~ela~~--~gillIvD~t~a~~ 338 (466)
++.+||..+.++. .|.+.++++++++ ||+|++.-.. -|...+.+|+++++++|+ .+++++|||+|+.+
T Consensus 124 L~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~-tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEF 202 (403)
T PF06838_consen 124 LKEFGIKYREVPLTEDGTIDWEAIKKALKPN-TKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEF 202 (403)
T ss_dssp TGGGT-EEEE--B-TTSSB-HHHHHHHHHTT-EEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTT
T ss_pred hHHhCceeEEEeecCCCCcCHHHHHHhhccC-ceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCccee
Confidence 5678999988873 3799999999974 9999997653 345666688888888887 47999999999987
Q ss_pred Cc-cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH------hCCCchHHHHHHHHHhhHHHHHHHH
Q 012321 339 LN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRVQ 411 (466)
Q Consensus 339 ~~-~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~------~G~~ls~~~A~l~lrgL~tl~~R~e 411 (466)
.- ..|.+.|+|++..|+-|-.||.--..||+++|+++++++....... .|.++.. ..+.++||=--+..+.
T Consensus 203 vE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~--~R~~~QGlFlAP~vV~ 280 (403)
T PF06838_consen 203 VETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGT--NRLMFQGLFLAPHVVG 280 (403)
T ss_dssp TSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTT--HHHHHHHHHHHHHHHH
T ss_pred ccccCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcch--HHHHHhHHhhchHHHH
Confidence 65 6788999999999999999987666799999999999987643332 2333322 2334556655555566
Q ss_pred HHHHHHHHHHHHHHcCC
Q 012321 412 QQNSTALRMAKILEAHP 428 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p 428 (466)
+..+.+...+..+++..
T Consensus 281 eAlKgaif~A~~fe~lG 297 (403)
T PF06838_consen 281 EALKGAIFAAALFEKLG 297 (403)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66677777777777653
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=157.92 Aligned_cols=234 Identities=18% Similarity=0.158 Sum_probs=162.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCC
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e--~--~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
.+.|++......+++.+.+++++|.+ + .+++++|++++..++... ..++++|++++..|.+...... .+...+
T Consensus 56 ~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~-~lg~~~ 134 (380)
T PRK02769 56 KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIAR-LLRIKS 134 (380)
T ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHH-HcCCCC
Confidence 34455555566677788889999963 3 466677788887665543 3578999999999999765543 232222
Q ss_pred cEEEEeC--CCCHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcC---CEEEEeCCCCCCCcc---c--
Q 012321 275 ITATVID--PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG---AIVCIDGTFATPLNQ---K-- 342 (466)
Q Consensus 275 i~v~~vd--~~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~g---illIvD~t~a~~~~~---~-- 342 (466)
..+...+ ..|+++|+++++++ +|.+|.+..++|++|.+.|+++|+++|+++| +++++|.+++.+... .
T Consensus 135 ~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~ 214 (380)
T PRK02769 135 RVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP 214 (380)
T ss_pred ceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccc
Confidence 3333222 25899999999763 3889999999999999999999999999998 699999998875431 1
Q ss_pred hh--ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--------HhCCC--chHHHHHHHHH--hhHHHHH
Q 012321 343 AL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGA--LNPNAAYLIIR--GMKTLHL 408 (466)
Q Consensus 343 pl--~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--------~~G~~--ls~~~A~l~lr--gL~tl~~ 408 (466)
++ ..++|.+..|.||++++|-+ .|+++.+++..+.+..... ..|+. ......|.+++ +...+..
T Consensus 215 ~~d~~~~vDsis~s~HK~~~~P~g--~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~ 292 (380)
T PRK02769 215 PFSFADGIDSIAISGHKFIGSPMP--CGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQ 292 (380)
T ss_pred cCCccCCCCEEEECCcccCCCCCC--cEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHH
Confidence 12 23899999999999986653 5788777776655421111 11221 23455666554 3445677
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
++++..+.++++.+.|++. ++..+..|.+
T Consensus 293 ~~~~~~~la~~l~~~L~~~-g~~~~~~p~~ 321 (380)
T PRK02769 293 RVQHCLDMAQYAVDRLQAN-GIPAWRNPNS 321 (380)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEcCCCc
Confidence 7888899999999999874 5555555543
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-16 Score=158.73 Aligned_cols=234 Identities=16% Similarity=0.106 Sum_probs=168.4
Q ss_pred cccCCCccCCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc
Q 012321 197 KRRASFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL 270 (466)
Q Consensus 197 ~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e--~--~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l 270 (466)
++...+.|++......+++.+.+++++|.+ + .+++++|++|+..++.... .++++|+++...|.+......
T Consensus 53 nP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~--- 129 (374)
T PLN03032 53 DPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR--- 129 (374)
T ss_pred CCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHH---
Confidence 444456777777788888999999999973 3 4788888999988776543 345689999999998765442
Q ss_pred ccCCcEEEEe--C---CCCHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcC-----CEEEEeCCCCCC
Q 012321 271 PKMGITATVI--D---PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-----AIVCIDGTFATP 338 (466)
Q Consensus 271 ~~~gi~v~~v--d---~~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~g-----illIvD~t~a~~ 338 (466)
.+|+.++.+ + ..|+++|+++|+++ +|.+|++...+|++|.+.|+++|+++|+++| +++++|.+++.+
T Consensus 130 -~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~ 208 (374)
T PLN03032 130 -MYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGL 208 (374)
T ss_pred -HcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhh
Confidence 233333333 3 35899999999763 3778888889999999999999999999996 589999998764
Q ss_pred Ccc-------chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--------HhCCC--chHHHHHHHHH
Q 012321 339 LNQ-------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGA--LNPNAAYLIIR 401 (466)
Q Consensus 339 ~~~-------~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--------~~G~~--ls~~~A~l~lr 401 (466)
... -.+..++|.+..|.||+++.|- ..|+++.++++++.+..... ..|+- ...+..|..++
T Consensus 209 ~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~--g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~ 286 (374)
T PLN03032 209 MMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPM--PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLR 286 (374)
T ss_pred hhhccCCCcccCCCcCCcEEEECcccccCCCc--CeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHH
Confidence 321 0123468999999999998554 35888887766655432111 12222 23566776654
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCC
Q 012321 402 --GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 437 (466)
Q Consensus 402 --gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~Pg 437 (466)
|.+.+..++++..++++++.+.|++++ +..+.-|.
T Consensus 287 ~~G~~g~~~~~~~~~~~a~~l~~~l~~~~-~~~~~~p~ 323 (374)
T PLN03032 287 RKGYRGIKRDVQHCMRNAHYLKDRLTEAG-LTCRLNEL 323 (374)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEECCC
Confidence 667888999999999999999999863 33334443
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=156.28 Aligned_cols=216 Identities=18% Similarity=0.168 Sum_probs=147.5
Q ss_pred CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcc---------cCC
Q 012321 208 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---------KMG 274 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~---------~~g 274 (466)
..+...+|+++++++.+ .+.+++++||++|+..++..+. .++|+|++.++.|++.......... ...
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T cd00610 77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL 156 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence 46789999999999998 6788889999999999988763 6789999999999885433222111 112
Q ss_pred cEEEEeCCC-----------CHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC
Q 012321 275 ITATVIDPA-----------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT 337 (466)
Q Consensus 275 i~v~~vd~~-----------D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~ 337 (466)
.++..++.. |+++|++.+++ +++++|+++..+|++|.+.+ +++|.++|+++|+++|+||++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g 236 (413)
T cd00610 157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG 236 (413)
T ss_pred CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 234445544 78899998875 34788888777778898887 99999999999999999999864
Q ss_pred CC-c-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHH--HHHHHHhCCCchHHHHHHHHHhhHHHH--
Q 012321 338 PL-N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNPNAAYLIIRGMKTLH-- 407 (466)
Q Consensus 338 ~~-~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l--~~~~~~~G~~ls~~~A~l~lrgL~tl~-- 407 (466)
.. . ........|++ |++|++++ | ...|++++++++++.+ ...........++..+..+...++.+.
T Consensus 237 ~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~ 312 (413)
T cd00610 237 FGRTGKMFAFEHFGVEPDIV--TLGKGLGG-G-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE 312 (413)
T ss_pred CCcCcchhhHhhcCCCCCeE--EEcccccC-c-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 21 1 11112234554 77899998 4 4578888999988886 222211122334554444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 012321 408 LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~ 427 (466)
...++..++.+++.+.|++.
T Consensus 313 ~~~~~~~~~~~~l~~~l~~~ 332 (413)
T cd00610 313 GLLENAAELGEYLRERLREL 332 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777766653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=160.61 Aligned_cols=207 Identities=18% Similarity=0.150 Sum_probs=138.9
Q ss_pred HHHHHHhhhCCC-cEE-Ee---CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhc-c-----cCCcEEEEeC--
Q 012321 215 VEEKMSALEGAE-STV-IM---ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL-P-----KMGITATVID-- 281 (466)
Q Consensus 215 Lee~lA~l~g~e-~~v-~~---~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l-~-----~~gi~v~~vd-- 281 (466)
.++++++++|++ +.+ +. +||++|+.+++.+++++||+|++.+..|++......... . ..++++..+.
T Consensus 85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 164 (452)
T PTZ00094 85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN 164 (452)
T ss_pred HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence 346899999974 222 22 689999999999999999999999989987543221110 0 1112333322
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCCcEEEe
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLH 353 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~gaDivv~ 353 (466)
..|+++|++.+++.++++|++. ++.+|...|+++|.++||++|+++++|++++.+.. ..++. ++|+++.
T Consensus 165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-~~D~l~~ 241 (452)
T PTZ00094 165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-YADVVTT 241 (452)
T ss_pred CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-CCcEEEc
Confidence 3489999999965447888763 33589999999999999999999999999877654 22333 7999999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHH-----HhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHH
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-----VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKI 423 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-----~~G~~ls~~~A~l~lrgL~tl-----~~R~e~~~~na~~La~~ 423 (466)
|+|||+.|+. ||+++.++++.+.+..... .+.++.++.....+...++.+ +.+.++..++++++.+.
T Consensus 242 S~hK~l~GP~---Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~ 318 (452)
T PTZ00094 242 TTHKSLRGPR---SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAA 318 (452)
T ss_pred CCccCCCCCC---ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 9999998875 5777766655443322111 111223333222222233332 34556778899999999
Q ss_pred HHcC
Q 012321 424 LEAH 427 (466)
Q Consensus 424 L~~~ 427 (466)
|++.
T Consensus 319 L~~~ 322 (452)
T PTZ00094 319 LEKR 322 (452)
T ss_pred HHhC
Confidence 9775
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=162.99 Aligned_cols=212 Identities=14% Similarity=0.185 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHH---HH-HhccCCC----EEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTVM---LL-ALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~-~SG~aAi~~a---l~-all~pGD----~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
....++++++++++|.+.+.++ ++|+.+.... +. .++++|| +|+++++.|+.+... +...|+++..+
T Consensus 113 el~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~----~~~~G~~vv~v 188 (481)
T PRK04366 113 ELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPAS----AAMAGFKVVEI 188 (481)
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHH----HHHcCCEEEEe
Confidence 4567788999999998665555 5666443322 22 3456776 999999999886643 34568887776
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCC--ccchhccCCcEEE
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVL 352 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~~~--~~~pl~~gaDivv 352 (466)
+. .|+++|+++++++ |++|++++|+ |+|.+ .|+++|+++||++|+++++|+++.... ...+.++|+|+++
T Consensus 189 ~~~~~~~~D~e~L~~~i~~~-t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~ 266 (481)
T PRK04366 189 PSNEDGLVDLEALKAAVGED-TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVH 266 (481)
T ss_pred ecCCCCCcCHHHHHhhcccC-CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEE
Confidence 43 4799999999875 9999999998 99977 489999999999999999999975331 1367788999999
Q ss_pred eccccccccccC---ceEEEEEeChHHHHHHHHH----------------------HHHhCCCchHHHHH--HHHHhhHH
Q 012321 353 HSATKFIGGHND---VLAGSISGSGKLVTQIRNL----------------------HHVLGGALNPNAAY--LIIRGMKT 405 (466)
Q Consensus 353 ~S~sK~lgG~gd---v~gG~vvg~~eli~~l~~~----------------------~~~~G~~ls~~~A~--l~lrgL~t 405 (466)
.+.||+|+++-+ --+|++..++++.+.+... +...+..+....+| +...|.+.
T Consensus 267 ~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~G 346 (481)
T PRK04366 267 LNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEG 346 (481)
T ss_pred EechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHH
Confidence 999999875521 1357888877766655210 00000111112333 33335555
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 012321 406 LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 406 l~~R~e~~~~na~~La~~L~~~ 427 (466)
+....+++.++++++.+.|++.
T Consensus 347 l~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 347 LREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh
Confidence 6666677788899999999876
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=155.37 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=118.0
Q ss_pred hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCC---CEEEEcCCCccchHHHHHhhcccCCcEE----EEeC
Q 012321 211 TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAG---GHIVTTTDCYRKTRIFIETVLPKMGITA----TVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pG---D~VLv~~~~y~~t~~~~~~~l~~~gi~v----~~vd 281 (466)
..+.+++ + +++|+ ++.++++|+++++..++.+++++| ++|++.+..|++....+...+++.|+++ ..++
T Consensus 72 ~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~ 149 (406)
T TIGR01814 72 LDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIE 149 (406)
T ss_pred hhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEec
Confidence 3444444 4 78886 356666667799999988887664 3688888999986655544455667665 3333
Q ss_pred C-----CCHHHHHHhcc--CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEe
Q 012321 282 P-----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLH 353 (466)
Q Consensus 282 ~-----~D~e~Le~ai~--~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~ 353 (466)
. .|++++++.++ ..+|++|++++++|.+|.+.|+++|.++||++|+++++|++++.+.. .+..++|+|+++.
T Consensus 150 ~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~ 229 (406)
T TIGR01814 150 PREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACW 229 (406)
T ss_pred cCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEE
Confidence 2 26788888774 12499999999999999999999999999999999999999887643 3444679999999
Q ss_pred ccccccccccCceEEEEEeCh
Q 012321 354 SATKFIGGHNDVLAGSISGSG 374 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~ 374 (466)
|.+||++|+.. +|+++.++
T Consensus 230 s~hK~l~g~pG--~~l~v~~~ 248 (406)
T TIGR01814 230 CTYKYLNAGPG--AGAFVHEK 248 (406)
T ss_pred cCccccCCCCC--eEEEEehh
Confidence 99999965431 45444444
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=155.21 Aligned_cols=218 Identities=15% Similarity=0.133 Sum_probs=147.6
Q ss_pred CCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---c----CCCEEEEcCCCccchHHHHHhh-c------
Q 012321 205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETV-L------ 270 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all---~----pGD~VLv~~~~y~~t~~~~~~~-l------ 270 (466)
.++.++...+|++++++++|.++++++.||++|+..++..+. . +||+|++.++.|++........ .
T Consensus 64 ~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 143 (379)
T TIGR00707 64 NLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK 143 (379)
T ss_pred cccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence 456788999999999999999999999999999998887542 2 3799999999997643222111 0
Q ss_pred --ccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc-c---cHHHHHHHHHhcCCEEEEeCCCCCCCc-cc-
Q 012321 271 --PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC-V---DVKLVSDLCHKKGAIVCIDGTFATPLN-QK- 342 (466)
Q Consensus 271 --~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v-~---dl~~I~ela~~~gillIvD~t~a~~~~-~~- 342 (466)
.....++.+++..|++++++.++++ +++|+++.++|++|.. . ++++|.++|+++|+++|+||+|..... ..
T Consensus 144 ~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~ 222 (379)
T TIGR00707 144 GFEPLVPGFSYAPYNDIESLKKAIDDE-TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF 222 (379)
T ss_pred cCCCCCCCceeeCCCCHHHHHHHhhhC-eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence 0111223344455899999999774 8999997776777754 3 388999999999999999999863211 11
Q ss_pred -h---hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH
Q 012321 343 -A---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST 416 (466)
Q Consensus 343 -p---l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~n 416 (466)
+ .....|++ +++|.++ +| .+.|++++++++++.++..........++..+..+...|+.+. ...++..++
T Consensus 223 ~~~~~~~~~~d~~--t~sK~~~-~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~ 298 (379)
T TIGR00707 223 FAYEHYGIEPDII--TLAKGLG-GG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEK 298 (379)
T ss_pred hhHHhcCCCCCEE--EEccccc-CC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 11234554 6899999 45 4578999999998887653322222345555555444444322 344556666
Q ss_pred HHHHHHHHHcC
Q 012321 417 ALRMAKILEAH 427 (466)
Q Consensus 417 a~~La~~L~~~ 427 (466)
++.+.+.|++.
T Consensus 299 ~~~~~~~l~~~ 309 (379)
T TIGR00707 299 GDYFKERLEEL 309 (379)
T ss_pred HHHHHHHHHHH
Confidence 77777766653
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-16 Score=157.77 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=144.3
Q ss_pred HHHhcccCCCccCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-cCCC----EEEEcCCCccchHHH
Q 012321 193 DFKEKRRASFEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-PAGG----HIVTTTDCYRKTRIF 265 (466)
Q Consensus 193 ~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all-~pGD----~VLv~~~~y~~t~~~ 265 (466)
.++.++... .|+....+..++.|+.+|++.|+ .+.+|+.++++++++++..+. ..+| +||+.+..|++....
T Consensus 69 ~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s 147 (428)
T KOG1549|consen 69 EYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDS 147 (428)
T ss_pred HhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHH
Confidence 345555444 57766777799999999999998 354444555599999998873 4567 999999999987655
Q ss_pred HHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-
Q 012321 266 IETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL- 339 (466)
Q Consensus 266 ~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~- 339 (466)
+. .++..|+++++++. .|.+.+++.|+++ |++|.+.+.+|..|.++|+++|.++|+++|+.+++|.+++.+.
T Consensus 148 ~~-~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~-T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i 225 (428)
T KOG1549|consen 148 CR-ALQEEGLEVTYLPVEDSGLVDISKLREAIRSK-TRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKI 225 (428)
T ss_pred HH-HHHhcCeEEEEeccCccccccHHHHHHhcCCC-ceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCc
Confidence 53 45666899988863 3789999999985 9999999999999999999999999999999999999998774
Q ss_pred ccchhccCCcEEEeccccccccccCceEEEEEeCh
Q 012321 340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG 374 (466)
Q Consensus 340 ~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~ 374 (466)
..+.-++++|++..|.||++|.++ .|+++.++
T Consensus 226 ~vDV~eln~D~~s~s~HK~ygp~~---iGaLYvr~ 257 (428)
T KOG1549|consen 226 PVDVQELNADFLSISAHKIYGPPG---IGALYVRR 257 (428)
T ss_pred cccHHHcCchheeeecccccCCCc---ceEEEEcc
Confidence 356668899999999999999997 47887765
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=160.96 Aligned_cols=176 Identities=23% Similarity=0.365 Sum_probs=131.0
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+.....+.++.+|+++|++.+.++++|+ .+|.+++++++++||+||+++++|.+.+..+ ...|+...++++
T Consensus 64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~al----il~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNAL----ILSGAIPVYIPPEDNE 139 (417)
T ss_dssp TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHH----HHHTEEEEEEEEEE-T
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHH----HHcCCeEEEecCCccc
Confidence 4556889999999999999999999999 8999999999999999999999999977543 234555555532
Q ss_pred ------CCH-----HHHHHhccCCC----ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-----c
Q 012321 283 ------ADM-----EGLEAALNNNN----VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-----K 342 (466)
Q Consensus 283 ------~D~-----e~Le~ai~~~~----tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-----~ 342 (466)
.++ +.|+++|++++ .++|++.+|+ ..|.+.|+++|+++||++|++|+|||+|+....+ .
T Consensus 140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~ 218 (417)
T PF01276_consen 140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRS 218 (417)
T ss_dssp TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTT
T ss_pred cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccc
Confidence 134 88988887532 3459998888 6899999999999999999999999998765433 2
Q ss_pred hhccCCc-------EEEeccccccccccCceEEEEEeChHH---HHHHHHHHHHhCCC
Q 012321 343 ALSLGAD-------LVLHSATKFIGGHNDVLAGSISGSGKL---VTQIRNLHHVLGGA 390 (466)
Q Consensus 343 pl~~gaD-------ivv~S~sK~lgG~gdv~gG~vvg~~el---i~~l~~~~~~~G~~ 390 (466)
...+|+| ++++|+||.+++.. .+.++..+.+. .++++.....+.++
T Consensus 219 a~~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~~v~~~~~~~~l~~~~TT 274 (417)
T PF01276_consen 219 ALALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDRIVDHERVNEALSMHQTT 274 (417)
T ss_dssp CSSTTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCCCTTHHHHHHHHHHHS-S
T ss_pred hhhccCccccccceeeeechhhcccccc--cceEEEecCCCcccHHHHHHHHHHHcCC
Confidence 3467899 99999999999886 56777665442 46677666655543
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=149.09 Aligned_cols=214 Identities=19% Similarity=0.235 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHhhhCCC--cEE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-----
Q 012321 210 PTTVVVEEKMSALEGAE--STV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v-~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----- 281 (466)
.....+.+.|..+++.+ +++ +.+||+.++.+++.++++|||+||+......+.+ +.++++.+|.+++.++
T Consensus 38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~ 115 (383)
T COG0075 38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGE 115 (383)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCC
Confidence 45667777888888865 444 4589999999999999999999999887766644 4577888998888775
Q ss_pred CCCHHHHHHhccCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-CCCccchhccCCcEEEecccccc
Q 012321 282 PADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 ~~D~e~Le~ai~~~-~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a-~~~~~~pl~~gaDivv~S~sK~l 359 (466)
..|+++++++++++ ..++|.+.+--.+||.+.|+++|+++|++||+++|||.+-+ .+...+..++|+|+++.+..|.|
T Consensus 116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l 195 (383)
T COG0075 116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL 195 (383)
T ss_pred CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence 34899999999843 47788887776788999999999999999999999999865 34567788999999999999999
Q ss_pred ccccCceEEEEEeChHHHHHHHH------------HHHHh---C---CCchHHHHHHHHHhhH-----HHHHHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRN------------LHHVL---G---GALNPNAAYLIIRGMK-----TLHLRVQQQNST 416 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~------------~~~~~---G---~~ls~~~A~l~lrgL~-----tl~~R~e~~~~n 416 (466)
+++.+ .|++..+++.++.+.. +...+ + .+.+...-+.+...|+ -++.|.++|+++
T Consensus 196 ~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~ 273 (383)
T COG0075 196 GAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRL 273 (383)
T ss_pred cCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 98873 5788877766655432 11111 1 1122111222222222 267899999999
Q ss_pred HHHHHHHHHcC
Q 012321 417 ALRMAKILEAH 427 (466)
Q Consensus 417 a~~La~~L~~~ 427 (466)
++.+.+.+++.
T Consensus 274 ~~a~r~~~~al 284 (383)
T COG0075 274 AEALRAGLEAL 284 (383)
T ss_pred HHHHHHHHHHc
Confidence 99999999864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=151.71 Aligned_cols=216 Identities=19% Similarity=0.167 Sum_probs=143.5
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc----------CCCEEEEcCCCccchHHHHHhhcc------
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKTRIFIETVLP------ 271 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~----------pGD~VLv~~~~y~~t~~~~~~~l~------ 271 (466)
..+..+.+++.++++.+.+.+++++||++|+..++..... .+++||+.+..|.+..........
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~ 150 (400)
T PTZ00125 71 YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYN 150 (400)
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhc
Confidence 3578889999999999889999999999999999886631 357888888887774322211110
Q ss_pred ---cCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-Cccc-
Q 012321 272 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQK- 342 (466)
Q Consensus 272 ---~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~-~~~~- 342 (466)
...-.+..++..|+++|++.++..++++|++|+++||+|.+.+ +++|.++|++||+++|+||++... ....
T Consensus 151 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~ 230 (400)
T PTZ00125 151 NFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKL 230 (400)
T ss_pred cCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence 0001233455668999999996335999999999999999987 999999999999999999997531 1111
Q ss_pred --h--hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHHH
Q 012321 343 --A--LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST 416 (466)
Q Consensus 343 --p--l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~--R~e~~~~n 416 (466)
. .....|+++ ++|.++++.. ..|++++++++++.+...........++..+..+...++.+.. ..++..+.
T Consensus 231 ~~~~~~~~~pd~~~--~sK~l~~g~~-~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~ 307 (400)
T PTZ00125 231 LAHDHEGVKPDIVL--LGKALSGGLY-PISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRL 307 (400)
T ss_pred hHHHhcCCCCCEEE--EcccccCCCc-CcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1 112347765 5699987532 4688899999988875432211122355555555544544321 22333344
Q ss_pred HHHHHHHHHc
Q 012321 417 ALRMAKILEA 426 (466)
Q Consensus 417 a~~La~~L~~ 426 (466)
.+.+.+.|++
T Consensus 308 ~~~l~~~l~~ 317 (400)
T PTZ00125 308 GEVFRDGLKE 317 (400)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-15 Score=153.58 Aligned_cols=214 Identities=19% Similarity=0.229 Sum_probs=152.2
Q ss_pred ccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHH-HHhhcccCCcEEEEe-
Q 012321 203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF-IETVLPKMGITATVI- 280 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~-~~~~l~~~gi~v~~v- 280 (466)
.|+ ++|+..+||+.+++++|.+.++.++||++|+.++....++|||+| +.+.|..+... + ...|....-+
T Consensus 66 ~ya--g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahI----e~~Gav~vDi~ 137 (450)
T TIGR02618 66 AYA--GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQ----EKNGATFVDII 137 (450)
T ss_pred hhc--CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHH----HhCCeEEEeee
Confidence 466 789999999999999999999999999999888776678999977 56777555433 2 1223222112
Q ss_pred -C-------------CCCHHHHHHhccCC---CceEEEEeCCCCCC-cccc---cHHHHHHHHHhcCCEEEEeCCCCC--
Q 012321 281 -D-------------PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFAT-- 337 (466)
Q Consensus 281 -d-------------~~D~e~Le~ai~~~---~tklV~lesPsNPt-G~v~---dl~~I~ela~~~gillIvD~t~a~-- 337 (466)
+ ..|+++|+++|+++ ++++|.+++++|.. |.++ ++++|.++|++||+.||.|.+...
T Consensus 138 ~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gN 217 (450)
T TIGR02618 138 IDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVEN 217 (450)
T ss_pred cccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhC
Confidence 1 13899999999763 35688999999966 7884 589999999999999999998433
Q ss_pred C---------Cccchh-------ccCCcEEEeccccccccccCceEEEEE-eChHHHHHHHHHHHHhCC-----CchHHH
Q 012321 338 P---------LNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGG-----ALNPNA 395 (466)
Q Consensus 338 ~---------~~~~pl-------~~gaDivv~S~sK~lgG~gdv~gG~vv-g~~eli~~l~~~~~~~G~-----~ls~~~ 395 (466)
. +...+. ...+|.++.|+.|..+++ +||+++ .+++++++++.+...+++ .+..-.
T Consensus 218 A~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~ 294 (450)
T TIGR02618 218 AYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRD 294 (450)
T ss_pred hhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhh
Confidence 1 212222 236899999999999887 478888 678999999988766643 222212
Q ss_pred HHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012321 396 AYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 396 A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~~ 427 (466)
-..+..+|+..- ...+...+++++|++.|++.
T Consensus 295 ~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~ 328 (450)
T TIGR02618 295 MEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA 328 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 111223444322 23344456799999999887
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=145.56 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=152.2
Q ss_pred chhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 209 NPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.......++++|++.. +++++++++..+||..++.++.+||-.|++++|.|+-.. ....-.|++++++
T Consensus 102 s~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~~lEVR~y 177 (447)
T KOG0259|consen 102 SVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYD----TRAIYSGLEVRYY 177 (447)
T ss_pred ccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHH----HhhhhcCceeEee
Confidence 3344555666666632 244554444459999999999999999999999998633 3344568999988
Q ss_pred CC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-cch---h-c
Q 012321 281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-QKA---L-S 345 (466)
Q Consensus 281 d~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-~~p---l-~ 345 (466)
|. .|++.+|..++++ |.++++.+|+||+|.+++ +++|+++|+++|+++|.||.|...++ .+| . .
T Consensus 178 dlLPe~~weIDL~~veal~DEN-T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~ 256 (447)
T KOG0259|consen 178 DLLPEKDWEIDLDGVEALADEN-TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGK 256 (447)
T ss_pred cccCcccceechHHHHHhhccC-eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhh
Confidence 74 3899999999985 999999999999999996 78999999999999999999875433 111 1 1
Q ss_pred cC---CcEEEeccccccccccCceEEEEEeC-h-------HHHHHHHHHHHHhCCCchHHHHHH---HHH-hhHHHHHHH
Q 012321 346 LG---ADLVLHSATKFIGGHNDVLAGSISGS-G-------KLVTQIRNLHHVLGGALNPNAAYL---IIR-GMKTLHLRV 410 (466)
Q Consensus 346 ~g---aDivv~S~sK~lgG~gdv~gG~vvg~-~-------eli~~l~~~~~~~G~~ls~~~A~l---~lr-gL~tl~~R~ 410 (466)
+. .-+.+.+.+|-+--+||. .||++.. + ..++.+............-..+.+ +.+ --+.+..++
T Consensus 257 fssiVPVitlggisKrW~VPGWR-lGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~ 335 (447)
T KOG0259|consen 257 FSSIVPVITLGGISKRWIVPGWR-LGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKL 335 (447)
T ss_pred ccccCceEeecccccccccCCce-eeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHH
Confidence 11 247889999999999997 5666543 2 233444444433322211122221 111 123356677
Q ss_pred HHHHHHHHHHHHHHHcCCCcE
Q 012321 411 QQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~V~ 431 (466)
.-...|++...++|++.|.+.
T Consensus 336 ~~lk~na~l~y~~Lk~IP~l~ 356 (447)
T KOG0259|consen 336 SFLKSNADLCYSRLKDIPCLT 356 (447)
T ss_pred HHHHhhHHHHHHHHhcCCCcc
Confidence 778899999999999999876
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=150.75 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=106.2
Q ss_pred EEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC------CCCHHHHHHhcc---CCCc
Q 012321 228 TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID------PADMEGLEAALN---NNNV 297 (466)
Q Consensus 228 ~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd------~~D~e~Le~ai~---~~~t 297 (466)
.+++++|. +++.+++.+++++||+|++++|+|+.....+.. ..|.++..++ ..|++++++.++ +++.
T Consensus 71 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~ 147 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNT---RRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGK 147 (388)
T ss_pred eeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH---hcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCC
Confidence 45666665 999999999999999999999999886543321 2465655543 247899988876 2336
Q ss_pred eEEEEeCCCCCCccccc---HHHHHHHHHh-----cCCEEEEeCCCCCCCcc----ch-h----cc-CCc--EEEecccc
Q 012321 298 SLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFATPLNQ----KA-L----SL-GAD--LVLHSATK 357 (466)
Q Consensus 298 klV~lesPsNPtG~v~d---l~~I~ela~~-----~gillIvD~t~a~~~~~----~p-l----~~-gaD--ivv~S~sK 357 (466)
+++++++|+||||.+++ +++|+++|++ +++++|+||+|...... .+ . .. +.- +.+.|+||
T Consensus 148 ~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK 227 (388)
T PRK08637 148 VIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATK 227 (388)
T ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccc
Confidence 67889999999999986 5567776664 89999999998654221 11 1 11 111 23459999
Q ss_pred ccccccCceEEEEEe------ChHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISG------SGKLVTQIRN 382 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg------~~eli~~l~~ 382 (466)
.++.+|. +.||++. ++++++.+..
T Consensus 228 ~~~~pGl-RlG~~~~~~~~~~~~~l~~~~~~ 257 (388)
T PRK08637 228 EEFVWGF-RVGFITFGTKAGSSQTVKEALEK 257 (388)
T ss_pred cCCCccc-ceEEEEEccccCCcHHHHHHHHH
Confidence 9888884 5788774 3677777654
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=153.13 Aligned_cols=217 Identities=15% Similarity=0.011 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHhhhCCC----cEEE--eCCHHHHHHHHHHHhc----c----CC-----CEEEEcCCCccchHHHHHhhc
Q 012321 210 PTTVVVEEKMSALEGAE----STVI--MASGMSASTVMLLALV----P----AG-----GHIVTTTDCYRKTRIFIETVL 270 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e----~~v~--~~SG~aAi~~al~all----~----pG-----D~VLv~~~~y~~t~~~~~~~l 270 (466)
...++.++++++++|.+ +.++ +++|++|+..++.+.. . .| .+|++++..|.+.....
T Consensus 80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~---- 155 (431)
T TIGR01788 80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFA---- 155 (431)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHH----
Confidence 45666788899999875 3333 5777799988876543 1 12 37999999998866443
Q ss_pred ccCCcEEEEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc------CCEEEEeCCCCCC
Q 012321 271 PKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATP 338 (466)
Q Consensus 271 ~~~gi~v~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~------gillIvD~t~a~~ 338 (466)
+..|++++.++. .|+++|+++|+++ |.+|.+...+|.+|.+.|+++|+++|+++ |+++++|.+|+.+
T Consensus 156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~-t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~ 234 (431)
T TIGR01788 156 RYFDVELREVPMDPGRYVIDPEQVVEAVDEN-TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGF 234 (431)
T ss_pred HHcCceeEEEecCCCceeeCHHHHHHHHhhC-CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHH
Confidence 334666555431 3789999999875 89999999999999999999999999999 9999999998842
Q ss_pred C-------c-cchhccCCcEEEeccccccccccCceEEEEEeChH--HHHHHHHHHHHhCC----------C--chHHHH
Q 012321 339 L-------N-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLHHVLGG----------A--LNPNAA 396 (466)
Q Consensus 339 ~-------~-~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e--li~~l~~~~~~~G~----------~--ls~~~A 396 (466)
. . .+....++|.+..|.||++.++-+ .|+++.+++ +.+.+......++. . ......
T Consensus 235 ~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~ 312 (431)
T TIGR01788 235 IAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQ 312 (431)
T ss_pred HHHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHH
Confidence 2 1 111134789999999999855542 477665543 22322111011111 1 122345
Q ss_pred HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 397 YLIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 397 ~l~lrg--L~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
|+.++. ...+..++++..+.++++.+.|+++|.++.+
T Consensus 313 w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~ 351 (431)
T TIGR01788 313 YYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEII 351 (431)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEe
Confidence 665543 4567777888999999999999999877544
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=154.23 Aligned_cols=217 Identities=17% Similarity=0.189 Sum_probs=145.5
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCC-------CEEEEcCCCccchHHHHHhhc-c----
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------GHIVTTTDCYRKTRIFIETVL-P---- 271 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pG-------D~VLv~~~~y~~t~~~~~~~l-~---- 271 (466)
...+.++...+|+++|+++.+.+.++++++|++|+.+++..+...+ ++|++.++.|.+........- .
T Consensus 75 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 154 (396)
T PRK02627 75 SNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQ 154 (396)
T ss_pred ccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCcccc
Confidence 3456689999999999999988889999999999999998765443 679999999876432211110 0
Q ss_pred ----cCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc-ccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-cc
Q 012321 272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-CVD---VKLVSDLCHKKGAIVCIDGTFATPLN-QK 342 (466)
Q Consensus 272 ----~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~-v~d---l~~I~ela~~~gillIvD~t~a~~~~-~~ 342 (466)
...-.+..++..|++++++++.+ ++++|++|.++||+|. +.+ +++|.++|+++|+++|+||+|..... ..
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~ 233 (396)
T PRK02627 155 EGFEPLVEGFIYVPFNDIEALKAAITD-KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK 233 (396)
T ss_pred ccCCCCCCCceEeCCCCHHHHHHhcCC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc
Confidence 00112233455589999999976 4999999999999984 443 78999999999999999999863211 11
Q ss_pred --h-hccC--CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012321 343 --A-LSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS 415 (466)
Q Consensus 343 --p-l~~g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~ 415 (466)
. ...+ .|++ +++|.+++ | .+.|++++++++++.+...........++..+..++..++.+. ..+++..+
T Consensus 234 ~~~~~~~~~~pdi~--t~sK~~~~-G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~ 309 (396)
T PRK02627 234 LFAYQHYGIEPDIM--TLAKGLGG-G-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAE 309 (396)
T ss_pred eeeehhcCCCCCEE--EEcchhhC-C-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 1 1123 4544 68999994 4 4678899999888877543222223346666665555555432 22344444
Q ss_pred HHHHHHHHHH
Q 012321 416 TALRMAKILE 425 (466)
Q Consensus 416 na~~La~~L~ 425 (466)
+.+++.+.|+
T Consensus 310 ~~~~~~~~l~ 319 (396)
T PRK02627 310 VGEYLRAKLR 319 (396)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-15 Score=153.08 Aligned_cols=214 Identities=17% Similarity=0.128 Sum_probs=144.6
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh----ccCCC----EEEEcCCCccchHHHHHhhcc--c----
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVLP--K---- 272 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al----l~pGD----~VLv~~~~y~~t~~~~~~~l~--~---- 272 (466)
+.++...+|+++|+++.+.+.+++++||++|+..++... ..+|| +||+.++.|++........-. .
T Consensus 70 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 149 (389)
T PRK01278 70 YRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEG 149 (389)
T ss_pred cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence 457888999999999987788999999999999998765 45676 899999999875433211100 0
Q ss_pred C---CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc-cc--
Q 012321 273 M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN-QK-- 342 (466)
Q Consensus 273 ~---gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~----dl~~I~ela~~~gillIvD~t~a~~~~-~~-- 342 (466)
+ .-.+..++..|++++++++++ ++++|++|.++|++|... ++++|.++|++||+++|+||+|..... ..
T Consensus 150 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~ 228 (389)
T PRK01278 150 FGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF 228 (389)
T ss_pred CCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce
Confidence 0 011233445689999999987 499999998888888443 589999999999999999999763211 11
Q ss_pred ---hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHH
Q 012321 343 ---ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTA 417 (466)
Q Consensus 343 ---pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na 417 (466)
......|+ .+++|.+++ | ...|++++++++++.+.........+.++..+..++..++.+. ...++..++.
T Consensus 229 ~~~~~~~~pdi--~t~sK~l~~-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~ 304 (389)
T PRK01278 229 AHEWAGVTPDI--MAVAKGIGG-G-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMG 304 (389)
T ss_pred eecccCCCCCE--EEEehhccC-C-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11122454 478999984 3 4578888988888776543332223456666666655555442 1234444455
Q ss_pred HHHHHHHH
Q 012321 418 LRMAKILE 425 (466)
Q Consensus 418 ~~La~~L~ 425 (466)
+++.+.|+
T Consensus 305 ~~l~~~l~ 312 (389)
T PRK01278 305 LYLKQKLE 312 (389)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=164.65 Aligned_cols=178 Identities=14% Similarity=0.078 Sum_probs=130.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCC--Cc-EEEeC-CHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGA--ES-TVIMA-SGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~--e~-~v~~~-SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
.|..++......+..++++++++|+ ++ .|+|+ ++++|+.+++..+ +++||+||++...|.+...+. ..+++.|+
T Consensus 69 ~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~~~G~ 147 (805)
T PLN02724 69 QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYALEKGA 147 (805)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHHHcCC
Confidence 3444555566788999999999997 33 45555 4569999998887 788999999988898866443 45566788
Q ss_pred EEEEeCCC-------------C--HHHHHHhcc---------CCCceEEEEeCCCCCCcccccHHHHHHHHHhc------
Q 012321 276 TATVIDPA-------------D--MEGLEAALN---------NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------ 325 (466)
Q Consensus 276 ~v~~vd~~-------------D--~e~Le~ai~---------~~~tklV~lesPsNPtG~v~dl~~I~ela~~~------ 325 (466)
++.+++.. + .++|++.++ ..++++|.+.+.+|.+|.++|++.|.++++..
T Consensus 148 ~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~ 227 (805)
T PLN02724 148 AAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSK 227 (805)
T ss_pred eEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhccccccc
Confidence 88877532 1 144555431 12478999999999999999999775555432
Q ss_pred --CCEEEEeCCCCCCCc-cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHH
Q 012321 326 --GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 326 --gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~ 381 (466)
++++++|.+++.+.. .+.-++++|+++.|+||++++|.+ .|+++.++++++.+.
T Consensus 228 ~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~vr~~~~~~l~ 284 (805)
T PLN02724 228 SGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLVRRDAAKLLK 284 (805)
T ss_pred CcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEEehhhhhhhc
Confidence 368999999876643 344467899999999999996653 588888887776654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-14 Score=150.82 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=140.3
Q ss_pred CchhHHHHHH----HHHhhhCCC-cEEEe----CCHHHHHHHHHHHhccCCCEEEEcCCCccchHH--HHHhh--cccCC
Q 012321 208 GNPTTVVVEE----KMSALEGAE-STVIM----ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI--FIETV--LPKMG 274 (466)
Q Consensus 208 ~~p~~~~Lee----~lA~l~g~e-~~v~~----~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~--~~~~~--l~~~g 274 (466)
|+...+++|+ +..++++.+ ..+++ .||+.|+..++.++++|||+|+..+...++... ..... +...+
T Consensus 74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~ 153 (475)
T PLN03226 74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS 153 (475)
T ss_pred CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence 4567777776 455667764 44445 899999999999999999999986644444221 11111 11112
Q ss_pred cEEE--Ee--C----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012321 275 ITAT--VI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----- 341 (466)
Q Consensus 275 i~v~--~v--d----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~----- 341 (466)
+.+. .+ + ..|+++|++.+...++++|++ ..++ ++...|+++|.++|+++|++|++|+++..++..
T Consensus 154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~-~~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~ 231 (475)
T PLN03226 154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIA-GASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA 231 (475)
T ss_pred EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEE-ecCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence 2111 11 1 238999999887545787766 3333 688899999999999999999999998766542
Q ss_pred chhccCCcEEEeccccccccccCceEEEEEeChHHH-----------H---HHHHHH-HHhCCCchHHHHHHHHHhhHH-
Q 012321 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-----------T---QIRNLH-HVLGGALNPNAAYLIIRGMKT- 405 (466)
Q Consensus 342 ~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli-----------~---~l~~~~-~~~G~~ls~~~A~l~lrgL~t- 405 (466)
.|+. ++|+++.|+||+|.|+. ||+++++++++ + .+.... ..+.+.+++...+.+..+++.
T Consensus 232 ~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i 307 (475)
T PLN03226 232 SPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA 307 (475)
T ss_pred CCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence 3343 69999999999998774 68888877544 1 111111 112233444333333333333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHcC
Q 012321 406 ----LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 406 ----l~~R~e~~~~na~~La~~L~~~ 427 (466)
.+.+.++..+|+++|++.|++.
T Consensus 308 ~~~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 308 MTPEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 2446788899999999999884
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-14 Score=147.85 Aligned_cols=186 Identities=20% Similarity=0.186 Sum_probs=130.5
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc----cCCC-EEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all----~pGD-~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+..+..++|+++|+++.+. +.++++||++|+..++..+. .+|+ .|++.+..|+++......... .+.++..++
T Consensus 88 ~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~ 165 (402)
T PRK07505 88 VRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETID 165 (402)
T ss_pred hhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeC
Confidence 4567889999999999988 89999999998887775432 2233 355666555554322222222 245777788
Q ss_pred CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC--------Cccchhc---cCCcE
Q 012321 282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--------LNQKALS---LGADL 350 (466)
Q Consensus 282 ~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~--------~~~~pl~---~gaDi 350 (466)
..|+++++++++++ ++++++++|+||+|.+.++++|.++|+++|++||+||+++.. ....... ....+
T Consensus 166 ~~d~~~l~~~~~~~-~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i 244 (402)
T PRK07505 166 HNDLDALEDICKTN-KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTI 244 (402)
T ss_pred CCCHHHHHHHHhcC-CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeE
Confidence 88999999998764 789999999999999999999999999999999999997421 1111111 12247
Q ss_pred EEeccccccccccCceEEEEE-eChHHHHHHHHHHHH--hCCCchHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHV--LGGALNPNAAYLI 399 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vv-g~~eli~~l~~~~~~--~G~~ls~~~A~l~ 399 (466)
++.|++|.+++.| |+++ +++++++.++..... +++.+++..+..+
T Consensus 245 ~~~s~sK~~~~~G----g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~ 292 (402)
T PRK07505 245 IAASLGKAFGASG----GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAI 292 (402)
T ss_pred EEEechhhhhccC----eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHH
Confidence 7889999999763 6765 477888888764432 3334444443333
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=153.49 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=146.7
Q ss_pred HHHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccC-------------------------------CCEEEEcCCCccchH
Q 012321 216 EEKMSALEGAESTVI-MASGMSASTVMLLALVPA-------------------------------GGHIVTTTDCYRKTR 263 (466)
Q Consensus 216 ee~lA~l~g~e~~v~-~~SG~aAi~~al~all~p-------------------------------GD~VLv~~~~y~~t~ 263 (466)
.++..+++|++.+-+ .-||+.|+..++.++++| ||+|+..+..+++..
T Consensus 101 ~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHl 180 (493)
T PRK13580 101 AEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHL 180 (493)
T ss_pred HHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCee
Confidence 566677889866444 569999999999999976 899999887776632
Q ss_pred HH------HHh--hcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC
Q 012321 264 IF------IET--VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (466)
Q Consensus 264 ~~------~~~--~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~ 335 (466)
.. ... ....+|++-. -...|.+++++.++++ +++|++...+|. +...|+++|.++|+++|+++++|+++
T Consensus 181 thg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~~~~~~-~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH 257 (493)
T PRK13580 181 THGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAALAREF-KPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAH 257 (493)
T ss_pred ecCcccchhhheeeeEecccCcc-cCccCHHHHHHHHhhc-CCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECch
Confidence 11 000 0111222210 0135899999999886 667777788877 55789999999999999999999998
Q ss_pred CCCCcc--------chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-HHhCCCchHHHHHHHHH--hhH
Q 012321 336 ATPLNQ--------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGALNPNAAYLIIR--GMK 404 (466)
Q Consensus 336 a~~~~~--------~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~~~G~~ls~~~A~l~lr--gL~ 404 (466)
..++.. .+. .++|+++.|+||+|.|+. ||++++++++++.+.... ..+|+.+.+..+..+.. -+.
T Consensus 258 ~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~ 333 (493)
T PRK13580 258 FAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR 333 (493)
T ss_pred hhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh
Confidence 776542 233 368999999999997763 799999999988885433 24566666654443332 111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 405 --TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 405 --tl~~R~e~~~~na~~La~~L~~~p 428 (466)
....+.++..+|++.|++.|.+..
T Consensus 334 ~~ef~~y~~~l~~Na~~La~~L~~~G 359 (493)
T PRK13580 334 TPEFQKYAQQVVDNARALAEGFLKRG 359 (493)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 224578889999999999998764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=162.99 Aligned_cols=247 Identities=19% Similarity=0.195 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhhCCCcEEEeCCHH----HHHHHHHHHhccC-CC----EEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALEGAESTVIMASGM----SASTVMLLALVPA-GG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e~~v~~~SG~----aAi~~al~all~p-GD----~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
..+++++|++++|.+.+++.++.+ .|+.+++.+++++ || +||++...|+....-+. ..|+++.+++.
T Consensus 570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~----~~G~~vv~v~~ 645 (993)
T PLN02414 570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA----MCGMKIVVVGT 645 (993)
T ss_pred HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH----HCCCEEEEecc
Confidence 468899999999998777776666 6899999999866 88 89999999998764432 35888888764
Q ss_pred -----CCHHHHHHhccC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC--ccchhccCCcEEEe
Q 012321 283 -----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLH 353 (466)
Q Consensus 283 -----~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~--~~~pl~~gaDivv~ 353 (466)
.|+++|++++++ .+|++|++.+|+|.+|...|+++|+++||++|+++++|.++..+. ...|.++|+|+++.
T Consensus 646 d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~ 725 (993)
T PLN02414 646 DAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHL 725 (993)
T ss_pred CCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEe
Confidence 489999999985 248999999999999999999999999999999999999975543 35677899999999
Q ss_pred cccccccccc---CceEEEEEeChHHHHHHHHH------------H-HHhCCCc-hHH-------H--HHHHHHhhHHHH
Q 012321 354 SATKFIGGHN---DVLAGSISGSGKLVTQIRNL------------H-HVLGGAL-NPN-------A--AYLIIRGMKTLH 407 (466)
Q Consensus 354 S~sK~lgG~g---dv~gG~vvg~~eli~~l~~~------------~-~~~G~~l-s~~-------~--A~l~lrgL~tl~ 407 (466)
|.||+|++|- .-..|++..++++...+-.. . ...|..- .++ . +|+..-|.+.+.
T Consensus 726 s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~ 805 (993)
T PLN02414 726 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLT 805 (993)
T ss_pred cCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHH
Confidence 9999877442 11258888887665443211 1 0122211 111 1 223333444454
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEE------------eCCCCCC---CcchHHHHhhc-CCc-ceEEEEEe
Q 012321 408 LRVQQQNSTALRMAKILEAHPKVKRV------------HYPGLKS---HPEHHIATQQM-TGF-GGVVSFEV 462 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~p~V~~V------------~~PgL~s---~p~~~l~~~~~-~g~-Ggl~sfel 462 (466)
.--++...|+.++++.|++...+... ..+.++. -+..+++++.+ .|+ ++.++|..
T Consensus 806 ~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv 877 (993)
T PLN02414 806 DASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPV 877 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeecccc
Confidence 44556677899999999876443221 1112221 12256888877 343 56666543
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-14 Score=150.97 Aligned_cols=222 Identities=20% Similarity=0.169 Sum_probs=150.7
Q ss_pred CCccCCC--CchhHHHH----HHHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHH--
Q 012321 201 SFEYGRY--GNPTTVVV----EEKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-- 267 (466)
Q Consensus 201 ~~~Y~R~--~~p~~~~L----ee~lA~l~g~e~-----~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~-- 267 (466)
+|.-.|| ++...+++ .++..+++|.+. .|---||+.|+.+++.++++|||+|+..+..|++......
T Consensus 179 G~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~ 258 (586)
T PLN02271 179 GMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYT 258 (586)
T ss_pred CCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccccc
Confidence 3433444 44544544 455666788543 3445599999999999999999999999999998543221
Q ss_pred ---hhcccCCcEEEEe----C----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC
Q 012321 268 ---TVLPKMGITATVI----D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (466)
Q Consensus 268 ---~~l~~~gi~v~~v----d----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a 336 (466)
......|+.+..+ + ..|.+++++.....++|+|++....+| ...|+++|.++|+++|++|++|.++.
T Consensus 259 ~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~ 336 (586)
T PLN02271 259 PGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHI 336 (586)
T ss_pred ccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECccc
Confidence 1122335443332 2 248999998444446999999777777 77899999999999999999999987
Q ss_pred CCCc-----cchhccCCcEEEeccccccccccCceEEEEEeChH--------------------HHHHHHHHHH--HhCC
Q 012321 337 TPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------------------LVTQIRNLHH--VLGG 389 (466)
Q Consensus 337 ~~~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e--------------------li~~l~~~~~--~~G~ 389 (466)
.++. ..|+. ++|+++.|+||+|.||. ||+++.+++ +.+++..... ..|+
T Consensus 337 aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgG 412 (586)
T PLN02271 337 SGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGG 412 (586)
T ss_pred ccccccCcCCCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccC
Confidence 6543 34555 59999999999999995 677776653 3344433221 1222
Q ss_pred CchHHHHHHH--HH--hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 390 ALNPNAAYLI--IR--GMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 390 ~ls~~~A~l~--lr--gL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
......|.++ +. ....+....++..+|++.|++.|.+..
T Consensus 413 phn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G 455 (586)
T PLN02271 413 PHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRK 455 (586)
T ss_pred hhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2222122211 22 223457788899999999999998874
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=143.17 Aligned_cols=216 Identities=18% Similarity=0.155 Sum_probs=145.9
Q ss_pred CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc-cCC-CEEEEcCCCccchH-HHHHhhcc-c----C---C
Q 012321 206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRKTR-IFIETVLP-K----M---G 274 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all-~pG-D~VLv~~~~y~~t~-~~~~~~l~-~----~---g 274 (466)
.+.++...+|.+++++..+.+.+++++||++|+..++.... .+| ++|++.++.|++.. ..+...-. . + .
T Consensus 67 ~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~ 146 (377)
T PRK02936 67 LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLL 146 (377)
T ss_pred ccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCC
Confidence 34567788888888888777788999999999999987532 244 67888888887632 22211000 0 0 0
Q ss_pred cEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc-cchh---cc
Q 012321 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL 346 (466)
Q Consensus 275 i~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~----dl~~I~ela~~~gillIvD~t~a~~~~-~~pl---~~ 346 (466)
..+..++..|++++++.++++ +++|++|.+.++.|... .+++|.++|++||+++|+||+|..... ..+. ..
T Consensus 147 ~~~~~~~~~d~~~l~~~~~~~-~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~ 225 (377)
T PRK02936 147 PGFTHVPFNDIKALKEVMNEE-VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQF 225 (377)
T ss_pred CCceEeCCCCHHHHHHhccCC-eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhh
Confidence 123445566899999999864 99999999999888764 289999999999999999999853111 1111 12
Q ss_pred C--CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHH
Q 012321 347 G--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAK 422 (466)
Q Consensus 347 g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R~e~~~~na~~La~ 422 (466)
+ .|++ +++|.+++ | ..+|++++++++++.+...........++..+..++..++.+ ...+++..++.+.+.+
T Consensus 226 ~~~~di~--t~sK~l~~-G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~ 301 (377)
T PRK02936 226 GLDPDIV--TVAKGLGN-G-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQ 301 (377)
T ss_pred CCCCcEE--EEcccccC-C-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2 4654 68999994 4 457899999998887754322222234666666555555554 2345666677777777
Q ss_pred HHHc
Q 012321 423 ILEA 426 (466)
Q Consensus 423 ~L~~ 426 (466)
.|++
T Consensus 302 ~L~~ 305 (377)
T PRK02936 302 KLQE 305 (377)
T ss_pred HHHH
Confidence 6665
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-14 Score=155.37 Aligned_cols=211 Identities=14% Similarity=0.111 Sum_probs=150.2
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+.....+.++..|+++|++.+.++++|+ .+|.+++++++++||+||+++++|.+.+..+ ...|+...++.+
T Consensus 203 p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al----~L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----ILTGAKPVYMVPSRNR 278 (755)
T ss_pred CCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHH----HHcCCeEEEecccccc
Confidence 4455788999999999999999999998 8899999999999999999999999876543 334555555531
Q ss_pred ------CC-----HHHHHHhccCC-Cce--------EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC---
Q 012321 283 ------AD-----MEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--- 339 (466)
Q Consensus 283 ------~D-----~e~Le~ai~~~-~tk--------lV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~--- 339 (466)
.+ ++.|+++|+++ .++ ++++.+|+ ..|.+.|+++|+++||++|++|++||+|+...
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 357 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN 357 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHHhcCCeEEEECccccccccC
Confidence 23 88899888543 134 89998887 68999999999999999999999999976532
Q ss_pred ---cc-chh-----c-cCCc-EEEeccccccccccCceEEEEEeChH--HH--HHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012321 340 ---NQ-KAL-----S-LGAD-LVLHSATKFIGGHNDVLAGSISGSGK--LV--TQIRNLHHVLGGALNPNAAYLIIRGMK 404 (466)
Q Consensus 340 ---~~-~pl-----~-~gaD-ivv~S~sK~lgG~gdv~gG~vvg~~e--li--~~l~~~~~~~G~~ls~~~A~l~lrgL~ 404 (466)
.. .++ . .|+| ++++|.||.+++.. .+.++..+.. .+ ++++.....+.++.+. |+++..|+
T Consensus 358 ~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~~~~id~~r~~~~l~~~qSTSPS---Y~LmASLD 432 (755)
T PRK15029 358 PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPL---YAICASND 432 (755)
T ss_pred ccccccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCCccccCHHHHHHHHHHHcCCCcH---HHHHHHHH
Confidence 11 333 3 6898 99999999999876 5666655332 22 4666666655544222 22222222
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHcCC
Q 012321 405 T---------LHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 405 t---------l~~R~e~~~~na~~La~~L~~~p 428 (466)
. -...+++..+.+..+.+.|++.+
T Consensus 433 ~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 12224445556666777776554
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=140.93 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=145.8
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCccchHH-HHHhhc-------
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRI-FIETVL------- 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--------~pGD~VLv~~~~y~~t~~-~~~~~l------- 270 (466)
+.++...+|+++|+++.+.+.+++++||++|+..++.... ...++||..+..|++... .+...-
T Consensus 74 ~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~ 153 (397)
T TIGR03246 74 YTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQG 153 (397)
T ss_pred cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccC
Confidence 4577889999999999988899999999999999987652 123567877777776432 221110
Q ss_pred -ccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCC-----c
Q 012321 271 -PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPL-----N 340 (466)
Q Consensus 271 -~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~----dl~~I~ela~~~gillIvD~t~a~~~-----~ 340 (466)
....-.+..++..|++++++.+.++ +++|++|.++++.|.+. .+++|.++|++||+++|+||++. ++ .
T Consensus 154 ~~~~~~~~~~~~~~d~~~l~~~l~~~-~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~Gr~G~~ 231 (397)
T TIGR03246 154 FAPLPGGIKHAPYNDLAAAKALISDK-TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQT-GVGRTGEL 231 (397)
T ss_pred CCCCCCceEEeCCCCHHHHHHHhccC-eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cCCccccc
Confidence 0111234456677999999999764 99999997666667543 38999999999999999999972 22 1
Q ss_pred c--chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHH
Q 012321 341 Q--KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNST 416 (466)
Q Consensus 341 ~--~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R~e~~~~n 416 (466)
. .......|++ +++|.+++ | ...|++++++++++.++..........+|..+..++..++.+ +..+++..++
T Consensus 232 ~a~~~~gv~pDi~--t~~K~lgg-G-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~ 307 (397)
T TIGR03246 232 YAYMHYGVTPDIL--TSAKALGG-G-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQR 307 (397)
T ss_pred hhhhhcCCCCCEE--EeehhhhC-C-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 1 1112234665 68999975 3 457888899988887753222111123444444444444333 2345666677
Q ss_pred HHHHHHHHHcC----CCcEEEeC
Q 012321 417 ALRMAKILEAH----PKVKRVHY 435 (466)
Q Consensus 417 a~~La~~L~~~----p~V~~V~~ 435 (466)
.+++.+.|++. +.+..|..
T Consensus 308 ~~~l~~~L~~l~~~~~~~~~vrg 330 (397)
T TIGR03246 308 HDLFVDGLEKINARYNVFSEIRG 330 (397)
T ss_pred HHHHHHHHHHHHhcCCCeEeeec
Confidence 77777777653 33444443
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=144.19 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=146.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCccchHH-HHH--------hhc
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRI-FIE--------TVL 270 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--------~pGD~VLv~~~~y~~t~~-~~~--------~~l 270 (466)
.++...+|+++|+++.+.+.+++++||++|+..++.... ...++|+..+..|++... .+. ..+
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~ 159 (403)
T PRK05093 80 TNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGF 159 (403)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcC
Confidence 456678999999999887899999999999998887442 123567777777776432 111 001
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc--c---HHHHHHHHHhcCCEEEEeCCCCCCCc-cchh
Q 012321 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV--D---VKLVSDLCHKKGAIVCIDGTFATPLN-QKAL 344 (466)
Q Consensus 271 ~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~--d---l~~I~ela~~~gillIvD~t~a~~~~-~~pl 344 (466)
......+..++..|++++++.+.++ +++|++| |.||+|.+. + +++|.++|++||+++|+||+|..... ..+.
T Consensus 160 ~~~~~~~~~~~~~d~~~l~~~l~~~-~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~ 237 (403)
T PRK05093 160 GPKPADITHVPFNDLAAVKAVIDDH-TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF 237 (403)
T ss_pred CCCCCCcEEeCCCCHHHHHHHhcCC-eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch
Confidence 1112245566777999999999764 9999998 777776554 2 89999999999999999999763211 1111
Q ss_pred ---ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHH
Q 012321 345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALR 419 (466)
Q Consensus 345 ---~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~ 419 (466)
..+.+.-+.|++|.+++ | .+.|++++++++++.+...........++..++.++..|+.+. ...++..++.+.
T Consensus 238 ~~~~~~~~pdi~s~sK~l~~-G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~ 315 (403)
T PRK05093 238 AYMHYGVTPDILTSAKALGG-G-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQR 315 (403)
T ss_pred hhhhcCCCCCEEEecccccC-C-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 12222224588999994 4 4689999999998887643222222345665655555454432 345666777888
Q ss_pred HHHHHHcC
Q 012321 420 MAKILEAH 427 (466)
Q Consensus 420 La~~L~~~ 427 (466)
+.+.|++.
T Consensus 316 l~~~L~~~ 323 (403)
T PRK05093 316 FVDGLQKI 323 (403)
T ss_pred HHHHHHHH
Confidence 88888764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-13 Score=139.47 Aligned_cols=216 Identities=20% Similarity=0.192 Sum_probs=147.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---------cC-CCEEEEcCCCccch-HHHHHhhc-----c
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PA-GGHIVTTTDCYRKT-RIFIETVL-----P 271 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all---------~p-GD~VLv~~~~y~~t-~~~~~~~l-----~ 271 (466)
..+...+|+++|+++.|.+.+++++||++|+..++.... .+ .++|+.....|++. ...+...- .
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 567789999999999998899999999999999988642 13 35777788887763 33222110 0
Q ss_pred cCC---cEEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc--
Q 012321 272 KMG---ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-- 340 (466)
Q Consensus 272 ~~g---i~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~-- 340 (466)
.++ ..+..++..|+++|++.++. .++.+|++|.+.+++|.+.+ +++|.++|++||+++|+||++.. +.
T Consensus 157 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g-~g~~ 235 (401)
T TIGR01885 157 NFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG-LGRT 235 (401)
T ss_pred ccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC-CCcc
Confidence 112 12344566688999988852 24789999999999999886 99999999999999999999732 21
Q ss_pred cch-----hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHH
Q 012321 341 QKA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQ 413 (466)
Q Consensus 341 ~~p-----l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~--R~e~~ 413 (466)
... .....|+++ ++|.+++++. ..|++++++++++.++..........++..+..++..|+.+.. ..++.
T Consensus 236 G~~~~~~~~~~~~di~~--~gK~l~~g~~-~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~ 312 (401)
T TIGR01885 236 GKLLCVDHENVKPDIVL--LGKALSGGVY-PVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENA 312 (401)
T ss_pred chhhHHhhcCCCCCEEE--eeccccCCCC-CcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 111 223467775 5699987543 3578888888888775422211112245555555555555432 33556
Q ss_pred HHHHHHHHHHHHcC
Q 012321 414 NSTALRMAKILEAH 427 (466)
Q Consensus 414 ~~na~~La~~L~~~ 427 (466)
.+....+.+.|+++
T Consensus 313 ~~~~~~~~~~L~~l 326 (401)
T TIGR01885 313 EKLGEIFRDQLKKL 326 (401)
T ss_pred HHHHHHHHHHHHhc
Confidence 66677888888876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-13 Score=141.60 Aligned_cols=215 Identities=19% Similarity=0.243 Sum_probs=148.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHH-HHhhcccCCcEE-E
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF-IETVLPKMGITA-T 278 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~-~~~~l~~~gi~v-~ 278 (466)
+-.|+ ++|+..+||+.+++++|.+.++.++||++|+.+++...+++||.| +...|..+... + ...|... .
T Consensus 71 Dd~Ya--gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI----~~~Ga~fvD 142 (460)
T PRK13237 71 DEAYA--GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQ----ELNGGIFVD 142 (460)
T ss_pred chhhc--CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHH----HhCCcEEEe
Confidence 34566 789999999999999999999999999999998766668999965 55545544322 2 1223221 1
Q ss_pred Ee-------------C-CCCHHHHHHhccCC---CceEEEEeCCCCCC-cccc---cHHHHHHHHHhcCCEEEEeCCCCC
Q 012321 279 VI-------------D-PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFAT 337 (466)
Q Consensus 279 ~v-------------d-~~D~e~Le~ai~~~---~tklV~lesPsNPt-G~v~---dl~~I~ela~~~gillIvD~t~a~ 337 (466)
.+ + ..|+++|+++|+++ ++++|.++.++|.. |... ++++|.++|++||+.||.|.+...
T Consensus 143 i~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~ 222 (460)
T PRK13237 143 IIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCV 222 (460)
T ss_pred eecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchh
Confidence 11 1 24899999999753 35678888899988 5665 689999999999999999998543
Q ss_pred C-----------Cccchh-------ccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHh-C----CCchH
Q 012321 338 P-----------LNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL-G----GALNP 393 (466)
Q Consensus 338 ~-----------~~~~pl-------~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~-G----~~ls~ 393 (466)
+ +..++. ...+|+++.|++|.+..+ .||+++.+ ++++++++.+...+ | +.++.
T Consensus 223 gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~g 299 (460)
T PRK13237 223 ENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAG 299 (460)
T ss_pred cChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHHHhccccCCCcCCCChhh
Confidence 2 222332 124799999999999886 37887764 67888888775443 2 22322
Q ss_pred -HHHHHHHHhhH-HHH-HHHHHHHHHHHHHHHHHHcC
Q 012321 394 -NAAYLIIRGMK-TLH-LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 394 -~~A~l~lrgL~-tl~-~R~e~~~~na~~La~~L~~~ 427 (466)
..+.++ .|++ .++ ..+++..+++++|++.|.+.
T Consensus 300 rd~~alA-vgl~E~~~~~y~~~ri~~~~~l~~~L~~~ 335 (460)
T PRK13237 300 RDMEAMA-IGIEESVQYEYIEHRVGQVRYLGEKLLAA 335 (460)
T ss_pred hHHHHHH-hHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence 222222 2222 222 45556667888999999875
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-14 Score=144.63 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=133.6
Q ss_pred HHHHHHhhhCCC----cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhh-ccc-----CCcEEEE--eC
Q 012321 215 VEEKMSALEGAE----STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPK-----MGITATV--ID 281 (466)
Q Consensus 215 Lee~lA~l~g~e----~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~-l~~-----~gi~v~~--vd 281 (466)
.++++.++++++ .+-+ .-||+.|+.+++.+|++|||+|+..+..+++....-... .++ ...++.. +|
T Consensus 71 a~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d 150 (399)
T PF00464_consen 71 AIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVD 150 (399)
T ss_dssp HHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-
T ss_pred HHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeee
Confidence 366777889987 4443 579999999999999999999999998887632110000 000 0112222 23
Q ss_pred ----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCccchhccCCcEEE
Q 012321 282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQKALSLGADLVL 352 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-----a~~~~~~pl~~gaDivv 352 (466)
..|.+++++.+.+.++|+|++..-+ .....|++++.++|++.|++|++|.++ +.+...+|+.. +|++.
T Consensus 151 ~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt 227 (399)
T PF00464_consen 151 PDTGLIDYDELEKLAKEHKPKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVT 227 (399)
T ss_dssp TTTSSB-HHHHHHHHHHH--SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEE
T ss_pred cCCCeECHHHHHHHHhhcCCCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEEE
Confidence 3489999998877679999985444 456689999999999999999999996 34677899987 99999
Q ss_pred eccccccccccCceEEEEEeC--------------hHHHHHHHHHHHHh--CC-CchHHHHHH--HHHhh-HHHHHHHHH
Q 012321 353 HSATKFIGGHNDVLAGSISGS--------------GKLVTQIRNLHHVL--GG-ALNPNAAYL--IIRGM-KTLHLRVQQ 412 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~--------------~eli~~l~~~~~~~--G~-~ls~~~A~l--~lrgL-~tl~~R~e~ 412 (466)
.|+||+|.||. +|+|+++ +++.++|.+..... |+ .+....+.. +...+ .......++
T Consensus 228 ~sThKtl~GPr---ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~q 304 (399)
T PF00464_consen 228 GSTHKTLRGPR---GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQ 304 (399)
T ss_dssp EESSGGG-SSS----EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred eeccccccccC---ceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHH
Confidence 99999999994 8999999 67888887654322 22 122222221 12222 235678889
Q ss_pred HHHHHHHHHHHHHcCC
Q 012321 413 QNSTALRMAKILEAHP 428 (466)
Q Consensus 413 ~~~na~~La~~L~~~p 428 (466)
..+|++.|++.|.+..
T Consensus 305 Vv~NAk~La~~L~~~G 320 (399)
T PF00464_consen 305 VVKNAKALAEALQERG 320 (399)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999999975
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=139.20 Aligned_cols=212 Identities=19% Similarity=0.236 Sum_probs=158.3
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
.+....+||+.||+|.+.+.+++|+|.--|+...|..|. -||-+|......|.+.. .-.+..+++-..+...|+
T Consensus 214 ~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI----~GIrns~v~K~IFrHND~ 289 (570)
T KOG1360|consen 214 HSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMI----QGIRNSRVPKHIFRHNDL 289 (570)
T ss_pred CCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHH----HHhhhcCCcceeeccCCH
Confidence 356688999999999999999999999988888887764 47877776666665533 223445666556677888
Q ss_pred HHHHHhccCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--------c-hhccCCcEEEe
Q 012321 286 EGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--------K-ALSLGADLVLH 353 (466)
Q Consensus 286 e~Le~ai~~~---~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~--------~-pl~~gaDivv~ 353 (466)
+.|++.++.. .+|+|-+|+.++..|.+.|+++|++++|+||++..+||+++.++.. + ..-...||+..
T Consensus 290 ~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsG 369 (570)
T KOG1360|consen 290 DHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISG 369 (570)
T ss_pred HHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhccc
Confidence 8888888642 3799999999999999999999999999999999999997655431 1 12234699999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHH---HhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLII---RGMKTL--HLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~l---rgL~tl--~~R~e~~~~na~~La~~L~~ 426 (466)
++.|.||- +||+|.+...+++.+|.+.. ++...++|..-.-++ +.|+.- ....+++++|.+++.+.|.+
T Consensus 370 TLgKafGc----VGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~ 445 (570)
T KOG1360|consen 370 TLGKAFGC----VGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLME 445 (570)
T ss_pred chhhhccc----ccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 47999999999999998765 344566665333223 333332 12234567788888888876
Q ss_pred C
Q 012321 427 H 427 (466)
Q Consensus 427 ~ 427 (466)
.
T Consensus 446 ~ 446 (570)
T KOG1360|consen 446 L 446 (570)
T ss_pred c
Confidence 4
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-13 Score=138.14 Aligned_cols=216 Identities=14% Similarity=0.146 Sum_probs=144.5
Q ss_pred CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCccchHHHHHhhcc-c----
Q 012321 206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLP-K---- 272 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--------~pGD~VLv~~~~y~~t~~~~~~~l~-~---- 272 (466)
.+.++...+|+++|+++.+.+.+++++||++|+..++.... ...++|+..+..|++.......+-. .
T Consensus 77 ~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 77 GYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred ccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 34577788999999999888889999999999999887642 1346788888888874422211100 0
Q ss_pred -C---CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc-----cHHHHHHHHHhcCCEEEEeCCCCCC-Cccc
Q 012321 273 -M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATP-LNQK 342 (466)
Q Consensus 273 -~---gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~-----dl~~I~ela~~~gillIvD~t~a~~-~~~~ 342 (466)
+ .-.+..++..|++++++.+++ ++++|++| |.|++|-+. .+++|.++|++||+++|+||++... ....
T Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~ 234 (406)
T PRK12381 157 DFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE 234 (406)
T ss_pred CCCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc
Confidence 0 012344556789999999976 48999996 888887643 3789999999999999999997321 1111
Q ss_pred h-----hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012321 343 A-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS 415 (466)
Q Consensus 343 p-----l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~ 415 (466)
. .....|+ .+++|.+++ | ...|++++++++++.+...........++..+..++..++.+. ..+++..+
T Consensus 235 ~~~~~~~~v~pDi--~t~sK~l~g-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~ 310 (406)
T PRK12381 235 LYAYMHYGVTPDV--LTTAKALGG-G-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQ 310 (406)
T ss_pred hhhhHhhCCCCCE--EEehhhhhC-C-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 1 1223455 588999985 3 4678888999998877543222212345665555554444442 24566666
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
+.+.+.+.|++.
T Consensus 311 ~~~~l~~~L~~l 322 (406)
T PRK12381 311 RHDWFVERLNTI 322 (406)
T ss_pred HHHHHHHHHHHH
Confidence 777777777653
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=138.76 Aligned_cols=221 Identities=22% Similarity=0.252 Sum_probs=156.1
Q ss_pred CCccCCC--CchhHHHH----HHHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC
Q 012321 201 SFEYGRY--GNPTTVVV----EEKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 201 ~~~Y~R~--~~p~~~~L----ee~lA~l~g~e~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
+|..-|| +...++.+ .++..+++|++.+=+ -.||+.|+.+++.++++|||+|+-.+-.+++....-.. ....
T Consensus 57 GyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~-v~~s 135 (413)
T COG0112 57 GYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSP-VNFS 135 (413)
T ss_pred CCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCC-CCcc
Confidence 4544444 44555544 456677899876544 46999999999999999999999999888874321100 0111
Q ss_pred Cc--EEEE--eC----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCc
Q 012321 274 GI--TATV--ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLN 340 (466)
Q Consensus 274 gi--~v~~--vd----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-----a~~~~ 340 (466)
|. ++.. +| ..|.|++++.+.+.++|+|+.-. +-.-+..|++++.++|++.|++|++|-++ +.+..
T Consensus 136 G~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~ 213 (413)
T COG0112 136 GKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGG--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH 213 (413)
T ss_pred ceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECc--cccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC
Confidence 11 1111 12 34899999988887899999733 33567789999999999999999999995 45677
Q ss_pred cchhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHH--HhCCCc-hHHHHH--HHHHhhH-HHHHHHHHH
Q 012321 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH--VLGGAL-NPNAAY--LIIRGMK-TLHLRVQQQ 413 (466)
Q Consensus 341 ~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~--~~G~~l-s~~~A~--l~lrgL~-tl~~R~e~~ 413 (466)
++|+.+ +|+|+.|.||+|.|| +||+|++++ ++.+++.+... ..|+.+ .-.++. .+...++ .++...++.
T Consensus 214 p~P~~~-AdvVTtTTHKTlrGP---rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qV 289 (413)
T COG0112 214 PNPLPH-ADVVTTTTHKTLRGP---RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQV 289 (413)
T ss_pred CCCCCc-cceEeCCcccCCCCC---CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 899998 999999999999999 599999985 78888876432 122222 112211 1122222 346677888
Q ss_pred HHHHHHHHHHHHcCC
Q 012321 414 NSTALRMAKILEAHP 428 (466)
Q Consensus 414 ~~na~~La~~L~~~p 428 (466)
.+|++.|++.|.++.
T Consensus 290 v~NAkaLAe~l~~~G 304 (413)
T COG0112 290 VKNAKALAEALKERG 304 (413)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999854
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=137.24 Aligned_cols=223 Identities=16% Similarity=0.194 Sum_probs=142.4
Q ss_pred CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhh-------c------
Q 012321 207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-------L------ 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~-------l------ 270 (466)
+.++...+|.++|+++... +.+++++||++|+..+++... ...++||..++.|++....+... .
T Consensus 85 ~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
T TIGR00713 85 APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSP 164 (423)
T ss_pred CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCC
Confidence 3566788999999998764 678888999999999887532 35689999999998853221110 0
Q ss_pred ---ccCCcEEEEeCCCCHHHHHHhccC--CCceEEEEe-CCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012321 271 ---PKMGITATVIDPADMEGLEAALNN--NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN 340 (466)
Q Consensus 271 ---~~~gi~v~~vd~~D~e~Le~ai~~--~~tklV~le-sPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~ 340 (466)
...+..+..++..|++++++.+++ .++++|++| .|+| +|.+.+ +++|.++|++||+++|+||+|.....
T Consensus 165 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~ 243 (423)
T TIGR00713 165 GVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV 243 (423)
T ss_pred CCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc
Confidence 000111233445689999998862 248999998 6777 787765 78999999999999999999853211
Q ss_pred -----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH---HHhCCCchHHHHHHHHHhhHHHHH--HH
Q 012321 341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLHL--RV 410 (466)
Q Consensus 341 -----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~---~~~G~~ls~~~A~l~lrgL~tl~~--R~ 410 (466)
........|++ +++|.+++ | ..+|++++++++++.+.... .......++..+..++..++.+.. .+
T Consensus 244 g~~~~~~~~~~~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~ 319 (423)
T TIGR00713 244 ALGGAQEYFGVEPDLT--TLGKIIGG-G-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVY 319 (423)
T ss_pred CcchhHHHhCCCcchh--hhhhhhcC-C-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHH
Confidence 11122234654 69999984 4 46799999999988876321 111123456555554444444332 22
Q ss_pred HHHHH----HHHHHHHHHHcCCCcEEEe
Q 012321 411 QQQNS----TALRMAKILEAHPKVKRVH 434 (466)
Q Consensus 411 e~~~~----na~~La~~L~~~p~V~~V~ 434 (466)
++..+ ..+.|.+.+++++.+..|.
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~ 347 (423)
T TIGR00713 320 TELDELAKRLAEGLSEVLEDTGIPHTVN 347 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 33333 3334455566676555444
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=149.19 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=131.3
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC------
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID------ 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd------ 281 (466)
.-...+.++..|+++|++...++.+|+ .++.+++++++.+||.||+++++|.+.+.. .+...|+...++.
T Consensus 173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~~n~~ 249 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETARNPF 249 (720)
T ss_pred ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeecccccc
Confidence 345788899999999999999999998 899999999999999999999999987642 1223355555542
Q ss_pred ----CCC-----HHHHHHhccCC--------C-ceEEEEeCCCCCCcccccHHHHHHH-HHhcCCEEEEeCCCCCCCccc
Q 012321 282 ----PAD-----MEGLEAALNNN--------N-VSLFFTESPTNPFLRCVDVKLVSDL-CHKKGAIVCIDGTFATPLNQK 342 (466)
Q Consensus 282 ----~~D-----~e~Le~ai~~~--------~-tklV~lesPsNPtG~v~dl~~I~el-a~~~gillIvD~t~a~~~~~~ 342 (466)
..+ .+.|+++|+++ + .+++++.+|+ ..|.+.|++.|+++ +|.++ +|++||+|+....+.
T Consensus 250 Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~ 327 (720)
T PRK13578 250 GFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFI 327 (720)
T ss_pred CCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhhccC
Confidence 123 45588887653 1 5899998887 68999999999999 68888 999999987543222
Q ss_pred ---------hhccCCc----EEEeccccccccccCceEEEEEeChHHH---------HHHHHHHHHhCCC
Q 012321 343 ---------ALSLGAD----LVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGA 390 (466)
Q Consensus 343 ---------pl~~gaD----ivv~S~sK~lgG~gdv~gG~vvg~~eli---------~~l~~~~~~~G~~ 390 (466)
.++.|+| ++++|.||.+++.+ .+.++..+...+ ++++.....+.++
T Consensus 328 p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qST 395 (720)
T PRK13578 328 PMMADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNHIKGQARYCPHKRLNNAFMLHAST 395 (720)
T ss_pred cccccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcccccccccCCHHHHHHHHHHHcCC
Confidence 2567999 99999999999876 566665544332 4566555555443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-13 Score=150.45 Aligned_cols=246 Identities=16% Similarity=0.165 Sum_probs=166.2
Q ss_pred hHHHHHHHHHhhhCCCcEEEeCC-HHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALEGAESTVIMAS-GMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~~~S-G~aAi~~al~all~--------pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
...+++++|+++.|.+.+-++.+ |+.+..+.++++.. ..+.|+++...|+..... +...|++++.++
T Consensus 531 ~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPas----a~~~G~~Vv~V~ 606 (939)
T TIGR00461 531 LIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPAS----AAMAGMQVVPVN 606 (939)
T ss_pred HHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHH----HHHCCCEEEEec
Confidence 35678999999999986555554 44665555544432 235799999999776533 445588887776
Q ss_pred C-----CCHHHHHHhccC--CCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCC--CCccchhccCCcEE
Q 012321 282 P-----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLV 351 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d-l~~I~ela~~~gillIvD~t~a~--~~~~~pl~~gaDiv 351 (466)
. .|+++|++++++ .++++|++.+|+| +|.+.| +++|+++||++|.++++|.++.. ....+|.++|+|++
T Consensus 607 ~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~ 685 (939)
T TIGR00461 607 CDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVC 685 (939)
T ss_pred cCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEE
Confidence 4 489999999974 3599999999999 788877 99999999999999999999744 23456778999999
Q ss_pred Eecccccccccc---CceEEEEEeChHHHHHHHH--HH---------H--------HhCCCchHHHHHH--HHHhhHHHH
Q 012321 352 LHSATKFIGGHN---DVLAGSISGSGKLVTQIRN--LH---------H--------VLGGALNPNAAYL--IIRGMKTLH 407 (466)
Q Consensus 352 v~S~sK~lgG~g---dv~gG~vvg~~eli~~l~~--~~---------~--------~~G~~ls~~~A~l--~lrgL~tl~ 407 (466)
+.|.||+|++|- .-..|++.+++++...+-. +. . .+|..+-...+|+ .+.|-+.|.
T Consensus 686 ~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~ 765 (939)
T TIGR00461 686 HLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLP 765 (939)
T ss_pred EecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHH
Confidence 999999776322 1135888887665433320 00 0 0111111133443 344556666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEeCCC---------------CC---CCcchHHHHhhc-CCc-ceEEEEEece
Q 012321 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPG---------------LK---SHPEHHIATQQM-TGF-GGVVSFEVCV 464 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~p~V~~V~~Pg---------------L~---s~p~~~l~~~~~-~g~-Ggl~sfel~~ 464 (466)
...+....|+.++++.|+++.. +.|++ ++ .-+.-+++|+.+ .|+ ++.++|-+.|
T Consensus 766 ~~a~~ailnAnYl~~rL~~~~~---~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g 839 (939)
T TIGR00461 766 KASVVAILNANYMATRLKDHYP---ILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPG 839 (939)
T ss_pred HHHHHHHHHHHHHHHHhhccCc---ccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCC
Confidence 6677788899999999988653 23332 11 123567888888 454 6666654443
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=139.22 Aligned_cols=203 Identities=17% Similarity=0.152 Sum_probs=135.9
Q ss_pred EEEeCCHHHHHHHHHHHh----cc----------------------CCCEEEEcCCCccchHHHHHhhcccCCc---EEE
Q 012321 228 TVIMASGMSASTVMLLAL----VP----------------------AGGHIVTTTDCYRKTRIFIETVLPKMGI---TAT 278 (466)
Q Consensus 228 ~v~~~SG~aAi~~al~al----l~----------------------pGD~VLv~~~~y~~t~~~~~~~l~~~gi---~v~ 278 (466)
.+++++|++|+..++.+. +. ++..|++++..|.+..... ...|+ +++
T Consensus 162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa----~~lglg~~~v~ 237 (522)
T TIGR03799 162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAA----DVLGIGRDNLI 237 (522)
T ss_pred eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHH----HHcCCCcccEE
Confidence 677888888877766542 11 2357888888898865443 22333 344
Q ss_pred EeC-----CCCHHHHHHhccC---CCceEEEEe--CCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch-----
Q 012321 279 VID-----PADMEGLEAALNN---NNVSLFFTE--SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----- 343 (466)
Q Consensus 279 ~vd-----~~D~e~Le~ai~~---~~tklV~le--sPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p----- 343 (466)
.++ ..|+++|+++|++ .+++.+.+. ..++.+|.+.|+++|+++|+++|++++||.+|+.+....+
T Consensus 238 ~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~ 317 (522)
T TIGR03799 238 AIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL 317 (522)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH
Confidence 433 2489999998852 234545444 4566899999999999999999999999999986543222
Q ss_pred hc--cCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHh--------------CC-CchHHHHHHHHHh--h
Q 012321 344 LS--LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL--------------GG-ALNPNAAYLIIRG--M 403 (466)
Q Consensus 344 l~--~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~--------------G~-~ls~~~A~l~lrg--L 403 (466)
+. .++|.++.|.||++.++-+ .|+++. ++++.+.+.....++ |+ ....+..|.+++. .
T Consensus 318 l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~ 395 (522)
T TIGR03799 318 LKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGR 395 (522)
T ss_pred hcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhH
Confidence 22 2689999999999888863 466655 455555443210000 11 1112345655553 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCC
Q 012321 404 KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 436 (466)
Q Consensus 404 ~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~P 436 (466)
+.+...+++..+.++++++.|+++|.++.+.-|
T Consensus 396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p 428 (522)
T TIGR03799 396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEP 428 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence 557778888999999999999999988766544
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-12 Score=137.64 Aligned_cols=199 Identities=16% Similarity=0.181 Sum_probs=132.9
Q ss_pred CCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------CCC-EEEEcCCCccchH-HHHHhhc---
Q 012321 205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AGG-HIVTTTDCYRKTR-IFIETVL--- 270 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~---------pGD-~VLv~~~~y~~t~-~~~~~~l--- 270 (466)
.++.++...+|+++|+++.+.+.+++++||++|+..++..... ++. .|+.....|.+.. ..+....
T Consensus 112 ~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~ 191 (474)
T PLN02624 112 RAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNE 191 (474)
T ss_pred cccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcc
Confidence 3466788899999999999888999999999999988864332 133 5777777777632 2221000
Q ss_pred --ccC---CcEEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-
Q 012321 271 --PKM---GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP- 338 (466)
Q Consensus 271 --~~~---gi~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~- 338 (466)
..+ .-.+.+++..|++.+++.++. .++++|++|.++|++|.+.+ +++|.++|++||+++|+||++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G 271 (474)
T PLN02624 192 ATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA 271 (474)
T ss_pred ccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 000 012344566788999988853 24899999999999999887 999999999999999999998621
Q ss_pred Ccc-----chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH
Q 012321 339 LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL 406 (466)
Q Consensus 339 ~~~-----~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl 406 (466)
... .......|+++ ++|.+++++. ..|++++++++++.+...........++..+..++..++.+
T Consensus 272 rtG~~~a~~~~~i~pDiv~--lsK~lggG~~-pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l 341 (474)
T PLN02624 272 RTGKMLACDWEEVRPDVVI--LGKALGGGVI-PVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVV 341 (474)
T ss_pred cCcchhhHHhcCCCCCEEE--ecccccCCCC-cceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 111 11122356666 5799987643 46777888888776653322111123555555555555444
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=147.88 Aligned_cols=214 Identities=16% Similarity=0.181 Sum_probs=147.0
Q ss_pred hHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHh----ccCCC----EEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALEGAESTVIMASGM-SASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~al----l~pGD----~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
...+++++|++++|.+.+-+..+|+ ++..+.++++ .++|| +|++++..|++.... +...|++++.++
T Consensus 543 ~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s----a~~~G~~vv~v~ 618 (954)
T PRK05367 543 LIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS----AVMAGMKVVVVA 618 (954)
T ss_pred HHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH----HHHCCCEEEEEC
Confidence 3567789999999998877777665 5554444333 25665 599999999886543 345688888775
Q ss_pred C-----CCHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC--CccchhccCCcEEE
Q 012321 282 P-----ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVL 352 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~--~~~~pl~~gaDivv 352 (466)
. .|+++|+++++++ ++.+|++.+|++-.+...|+++|+++||++|+++++|.++... ....|.++|+|+++
T Consensus 619 ~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~ 698 (954)
T PRK05367 619 CDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSH 698 (954)
T ss_pred CCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEE
Confidence 3 3789999999653 4788889888865333468999999999999999999998533 23467788999999
Q ss_pred eccccccccccC---ceEEEEEeChHHHHHHHHHH-------HHhCCCc-hHH---------HHHHHHHhhHHHHHHHHH
Q 012321 353 HSATKFIGGHND---VLAGSISGSGKLVTQIRNLH-------HVLGGAL-NPN---------AAYLIIRGMKTLHLRVQQ 412 (466)
Q Consensus 353 ~S~sK~lgG~gd---v~gG~vvg~~eli~~l~~~~-------~~~G~~l-s~~---------~A~l~lrgL~tl~~R~e~ 412 (466)
.|+||+|+.|-+ --.|++..++.+...+-... ...|... +++ ..|+...|.+.+..+.++
T Consensus 699 ~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~ 778 (954)
T PRK05367 699 LNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEV 778 (954)
T ss_pred ecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 999999864321 12567776654443332111 0011111 111 123334466777777888
Q ss_pred HHHHHHHHHHHHHcCC
Q 012321 413 QNSTALRMAKILEAHP 428 (466)
Q Consensus 413 ~~~na~~La~~L~~~p 428 (466)
...++.++++.|+++.
T Consensus 779 ~~~~A~Yl~~~L~~~~ 794 (954)
T PRK05367 779 AILNANYIAKRLKDHY 794 (954)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8889999999998763
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=130.88 Aligned_cols=223 Identities=13% Similarity=0.154 Sum_probs=160.9
Q ss_pred CchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 208 GNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
.+|..+++...+++--+- .+.++++-|+ +.|.+++++.+.|| ++|+...|+|.... .-+...++++..++.
T Consensus 67 ~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~p 142 (375)
T KOG0633|consen 67 PDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNP 142 (375)
T ss_pred CCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCC
Confidence 455556666666654332 5788999999 89999999999999 89999999997632 123445677766642
Q ss_pred ---CCHHHHHHhccCC-CceEEEEeCCCCCCcccccHHHHHHHHHhc-CCEEEEeCCCCCCCc-cch----hccCCcEEE
Q 012321 283 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLN-QKA----LSLGADLVL 352 (466)
Q Consensus 283 ---~D~e~Le~ai~~~-~tklV~lesPsNPtG~v~dl~~I~ela~~~-gillIvD~t~a~~~~-~~p----l~~gaDivv 352 (466)
.+.+++.+.+..+ ++|++|+++|+||||.....+.|.++..-. +.++++||+|..+.. ... .++..-+++
T Consensus 143 dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivl 222 (375)
T KOG0633|consen 143 DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVL 222 (375)
T ss_pred CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeeh
Confidence 3788888877643 589999999999999999888877777543 689999999865432 111 122334899
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc-hHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l-s~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
.++||.+|-.| ++.|+-..+.++++.+...+..+.... ....|..++. .++.++...+.+.+.+.+|.+.|.+.|.
T Consensus 223 qTlSKsfGLAG-iRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~ 301 (375)
T KOG0633|consen 223 QTLSKSFGLAG-IRVGYGAFPLSIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPF 301 (375)
T ss_pred hhhhhhcCcce-eEeecccccHHHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999776 567888888888888887776554322 2222222332 5667777777888889999999999998
Q ss_pred cEEEeCCC
Q 012321 430 VKRVHYPG 437 (466)
Q Consensus 430 V~~V~~Pg 437 (466)
+.. |||
T Consensus 302 ~~~--~~g 307 (375)
T KOG0633|consen 302 LND--YPG 307 (375)
T ss_pred ccC--CCC
Confidence 776 454
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-12 Score=133.29 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=163.8
Q ss_pred cCChHHHHHHHhcccC-CCccCCC---CchhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc--CCCEEEE
Q 012321 185 FKKTAELIDFKEKRRA-SFEYGRY---GNPTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--AGGHIVT 254 (466)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~~Y~R~---~~p~~~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~--pGD~VLv 254 (466)
+....++..+.-++.+ .+.++.| ....-.++-+++++++|.+ ..+++++|++++..++.+... +...|++
T Consensus 104 ~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~ 183 (470)
T PLN02263 104 YGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYA 183 (470)
T ss_pred hhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEE
Confidence 3334444443333332 3555543 2334456667788888863 378888889998887766432 3347888
Q ss_pred cCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC--ceEEEEeCCCCCCcccccHHHHHHHHHhcCC
Q 012321 255 TTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGA 327 (466)
Q Consensus 255 ~~~~y~~t~~~~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~--tklV~lesPsNPtG~v~dl~~I~ela~~~gi 327 (466)
++..|.+... .+..+|++++.++. .|+++|+++|.++. +-+|+....+-++|.+-|+++|.++|+++|+
T Consensus 184 S~~aH~Sv~K----Aa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~ 259 (470)
T PLN02263 184 SRESHYSVFK----AARMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGF 259 (470)
T ss_pred cCCccHHHHH----HHHhcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCC
Confidence 8888887553 34445666666552 48999999887542 5577777888899999999999999999997
Q ss_pred -----EEEEeCCCCCCCc---cc--hh--ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--------Hh
Q 012321 328 -----IVCIDGTFATPLN---QK--AL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VL 387 (466)
Q Consensus 328 -----llIvD~t~a~~~~---~~--pl--~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--------~~ 387 (466)
+++||.+|+..+. .. .+ ..++|-+..+.|||++.+- ..|+++.+++.++.+..... ..
T Consensus 260 ~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~--~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~ 337 (470)
T PLN02263 260 SQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIM 337 (470)
T ss_pred ccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCc--CEEEEEEehhhHhhhccChHhhCCCCCCcC
Confidence 9999999876432 11 11 2248999999999999886 35888777665544322111 12
Q ss_pred CCC--chHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 388 GGA--LNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 388 G~~--ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
|+. ..++..|..++ |.+.+..++++..++++++++.|++++.
T Consensus 338 gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~ 383 (470)
T PLN02263 338 GSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGI 383 (470)
T ss_pred CCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 221 13466777765 6788899999999999999999998843
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=130.61 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=132.0
Q ss_pred CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC----
Q 012321 226 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN---- 294 (466)
Q Consensus 226 e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~---- 294 (466)
+..+++++++.|+.++...|..|||..+++.|.|++..+ .+--+.|+++..+.. .+.+++|+++.+
T Consensus 147 ~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdr---dl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~ 223 (471)
T KOG0256|consen 147 ERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDR---DLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKL 223 (471)
T ss_pred cceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccc---cceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHh
Confidence 456666666699999999999999999999999999532 122244788777642 357888877642
Q ss_pred -CCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCccch-----h------c--cCCcEEEecccc
Q 012321 295 -NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQKA-----L------S--LGADLVLHSATK 357 (466)
Q Consensus 295 -~~tklV~lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~~~p-----l------~--~gaDivv~S~sK 357 (466)
.++|.|++.+|+||.|.+++- ..+..++.++++.||+||.|+..++..+ + . .+---++.|+||
T Consensus 224 ~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSK 303 (471)
T KOG0256|consen 224 GLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSK 303 (471)
T ss_pred CCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecc
Confidence 258999999999999999975 4566678899999999999876554221 1 1 112268899999
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---H----HHHHHHHHHHHHHHHHHHHcC
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---L----HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t---l----~~R~e~~~~na~~La~~L~~~ 427 (466)
-+|.+| .+.|+|... ++++...+++.. +|. .+++..+++..-|.+ . ..--+++...-+++.+.|++.
T Consensus 304 D~GlpG-fRvGviYS~ne~VvsaA~kmss-f~~-vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l 378 (471)
T KOG0256|consen 304 DFGLPG-FRVGVIYSNNEDVVSAATKMSS-FGL-VSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL 378 (471)
T ss_pred ccCCCc-eEEEEEEecChHHHHHHHHHhh-ccC-CcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 999998 457888764 566666665543 343 344444443322221 1 112233334445677777764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-12 Score=125.42 Aligned_cols=213 Identities=19% Similarity=0.211 Sum_probs=159.3
Q ss_pred hHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 211 TTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
..+++.+-+...+.. .--++-++|+.++..++..++.|||.|++....-.+-+ .....+++|++|+.++.
T Consensus 51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~ 128 (385)
T KOG2862|consen 51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQA 128 (385)
T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccC
Confidence 355666666666664 23445578889999999999999999988654433322 23567889999988853
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCC-CCccchhccCCcEEEeccccccc
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d-l~~I~ela~~~gillIvD~t~a~-~~~~~pl~~gaDivv~S~sK~lg 360 (466)
..+|++++++.++++++|++++-..-||.+.| ++.+.++||+|+++++||.+.+- +..+...++|+|+......|.++
T Consensus 129 ~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~ 208 (385)
T KOG2862|consen 129 VPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALG 208 (385)
T ss_pred ccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcC
Confidence 36899999999988999999999999999999 77888999999999999998543 33456668899999999999999
Q ss_pred cccCceEEEEEeChHHHHHHHHHHH--------------HhCCC---------c-----hHHHHHHHHHhhHHHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIRNLHH--------------VLGGA---------L-----NPNAAYLIIRGMKTLHLRVQQ 412 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~~~~~--------------~~G~~---------l-----s~~~A~l~lrgL~tl~~R~e~ 412 (466)
+|.+ .+.+..++...++++..+. .+|.. . ..+.+.+.+-.-+-|+.++++
T Consensus 209 aP~G--LsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~r 286 (385)
T KOG2862|consen 209 APAG--LSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRR 286 (385)
T ss_pred CCCC--cceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9974 3677778877777764332 12211 1 122334444444567888999
Q ss_pred HHHHHHHHHHHHHcC
Q 012321 413 QNSTALRMAKILEAH 427 (466)
Q Consensus 413 ~~~na~~La~~L~~~ 427 (466)
|+++++.+...|+++
T Consensus 287 H~e~s~~l~~~l~~~ 301 (385)
T KOG2862|consen 287 HREMSKWLKLSLEAL 301 (385)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999885
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=132.39 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=149.1
Q ss_pred CchhHHHH----HHHHHhhhCCCc---------EEEeCCHHHHHHHHHHHhcc-----------CCCEEEEcCCCccchH
Q 012321 208 GNPTTVVV----EEKMSALEGAES---------TVIMASGMSASTVMLLALVP-----------AGGHIVTTTDCYRKTR 263 (466)
Q Consensus 208 ~~p~~~~L----ee~lA~l~g~e~---------~v~~~SG~aAi~~al~all~-----------pGD~VLv~~~~y~~t~ 263 (466)
..|...++ -+++++++|.++ .+++++|++|+..++.+... +.-.|++++..|.+..
T Consensus 164 ~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~ 243 (539)
T PLN02590 164 TSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR 243 (539)
T ss_pred cCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH
Confidence 44555555 456677777542 67888888888776654321 1113555677777654
Q ss_pred HHHHhhcccCCc-----EEEEeC-----CCCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCE
Q 012321 264 IFIETVLPKMGI-----TATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI 328 (466)
Q Consensus 264 ~~~~~~l~~~gi-----~v~~vd-----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gil 328 (466)
... ..+|+ ....+| ..|+++|+++|.+. .+-+|+....+-.+|.+-|+++|+++|+++|+|
T Consensus 244 KAa----~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~W 319 (539)
T PLN02590 244 KAC----LIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIW 319 (539)
T ss_pred HHH----HHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCe
Confidence 433 33333 333334 25899999998542 245777777788899999999999999999999
Q ss_pred EEEeCCCCCCCccch----hcc---CCcEEEeccccccccccCceEEEEEeCh--HHHHHHHH---HH------------
Q 012321 329 VCIDGTFATPLNQKA----LSL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRN---LH------------ 384 (466)
Q Consensus 329 lIvD~t~a~~~~~~p----l~~---gaDivv~S~sK~lgG~gdv~gG~vvg~~--eli~~l~~---~~------------ 384 (466)
++||.+|+......+ +.. .+|-+..++|||+..+-+ .|+++.++ .+.+.+.. +.
T Consensus 320 lHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d 397 (539)
T PLN02590 320 LHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVN 397 (539)
T ss_pred EEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCC
Confidence 999999987643222 122 379999999999988864 46666553 23333321 11
Q ss_pred -----HHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCC
Q 012321 385 -----HVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 436 (466)
Q Consensus 385 -----~~~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~P 436 (466)
..++.....+..|+.++ |.+.+..+++++.+.++++++.|+++|.++.+.-|
T Consensus 398 ~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~ 456 (539)
T PLN02590 398 YKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR 456 (539)
T ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 01112234566777765 67789999999999999999999999877655443
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=133.32 Aligned_cols=219 Identities=14% Similarity=0.146 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHhhhCCCc---------EEEeCCHHHHHHHHHHHhcc-----C-----CC-EEEEcCCCccchHHHHHhh
Q 012321 210 PTTVVVEEKMSALEGAES---------TVIMASGMSASTVMLLALVP-----A-----GG-HIVTTTDCYRKTRIFIETV 269 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~---------~v~~~SG~aAi~~al~all~-----p-----GD-~VLv~~~~y~~t~~~~~~~ 269 (466)
..-..+-+++++++|.++ .+++++|++|+..++.+... . .. .|++++..|.+.....
T Consensus 122 ~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa--- 198 (490)
T PLN02880 122 ELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKAC--- 198 (490)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHH---
Confidence 334455566777777542 67778888887776654321 1 12 4556777787755433
Q ss_pred cccCCc-----EEEEeC-----CCCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC
Q 012321 270 LPKMGI-----TATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334 (466)
Q Consensus 270 l~~~gi-----~v~~vd-----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t 334 (466)
...|+ ....+| ..|+++|+++|++. .+-+|+.+..+..+|.+.|+++|+++|+++|++++||.+
T Consensus 199 -~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA 277 (490)
T PLN02880 199 -QIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAA 277 (490)
T ss_pred -HHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehh
Confidence 33343 223333 25899999988532 246777777788899999999999999999999999999
Q ss_pred CCCCCccch-----hc--cCCcEEEeccccccccccCceEEEEEeCh-H-HHHHHHHHHHH-------------------
Q 012321 335 FATPLNQKA-----LS--LGADLVLHSATKFIGGHNDVLAGSISGSG-K-LVTQIRNLHHV------------------- 386 (466)
Q Consensus 335 ~a~~~~~~p-----l~--~gaDivv~S~sK~lgG~gdv~gG~vvg~~-e-li~~l~~~~~~------------------- 386 (466)
|+.+....+ +. .++|.++.++|||+..+-+ .|+++.++ . +.+.+..-..+
T Consensus 278 ~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i 355 (490)
T PLN02880 278 YAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQI 355 (490)
T ss_pred hHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCc
Confidence 987643221 22 3589999999999988863 57766543 2 22322211100
Q ss_pred -hCCCchHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEe
Q 012321 387 -LGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 434 (466)
Q Consensus 387 -~G~~ls~~~A~l~l--rgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~ 434 (466)
.|.....+..|+.+ .|.+.+..++++..+.++++++.|+++|.++.+.
T Consensus 356 ~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~ 406 (490)
T PLN02880 356 PLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT 406 (490)
T ss_pred CCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 11112245566654 4778899999999999999999999988765443
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-12 Score=122.85 Aligned_cols=217 Identities=16% Similarity=0.232 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----- 283 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~----- 283 (466)
.|....+-+.|++++|.+.+-++.+.-++-++++.+++++||.|++...+|..++.. +++.|.++..++..
T Consensus 60 kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvA----AEragl~v~eVp~tg~Pey 135 (382)
T COG1103 60 KPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVA----AERAGLNVAEVPNTGYPEY 135 (382)
T ss_pred CCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHH----HHhcCCeEEecCCCCCCce
Confidence 567777777799999988666554444999999999999999999999999887743 45668888777632
Q ss_pred --CHHHHHHhc----cC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEec
Q 012321 284 --DMEGLEAAL----NN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS 354 (466)
Q Consensus 284 --D~e~Le~ai----~~--~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S 354 (466)
++|...+.| ++ .++.+.++.+|....|.+.|.++++++|+++|+++++..+|..+- ..+..+.|+|+++.|
T Consensus 136 ~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgS 215 (382)
T COG1103 136 KITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGS 215 (382)
T ss_pred EecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEec
Confidence 444443333 22 247899999999999999999999999999999999999998763 356667899999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHH-H--------HhCCCchHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H--------VLGGALNPNAAYLIIRGMKTLHLRV---QQQNSTALRMAK 422 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~--------~~G~~ls~~~A~l~lrgL~tl~~R~---e~~~~na~~La~ 422 (466)
.||.++..+ ..|++..+.++.+.+-+.. . .+|.+.-.....-+...+.....|+ ++-.++++.+.+
T Consensus 216 GHKsmAAs~--PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~ 293 (382)
T COG1103 216 GHKSMAASA--PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVA 293 (382)
T ss_pred CccchhccC--CeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998776 4699988988887654322 1 3444321111111122333333444 444567888888
Q ss_pred HHHcCCCcE
Q 012321 423 ILEAHPKVK 431 (466)
Q Consensus 423 ~L~~~p~V~ 431 (466)
.|+++.+|.
T Consensus 294 elEkigg~~ 302 (382)
T COG1103 294 ELEKIGGVK 302 (382)
T ss_pred HHHHhhhHH
Confidence 888876443
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=139.72 Aligned_cols=211 Identities=22% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCC---CccchHHHHHhhcccCCcEEEEeCC---CCHH
Q 012321 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTD---CYRKTRIFIETVLPKMGITATVIDP---ADME 286 (466)
Q Consensus 213 ~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~---~y~~t~~~~~~~l~~~gi~v~~vd~---~D~e 286 (466)
..+++.++.+.|+|+++++++..+|+.+++.++. +|.+||++.. .+++.++ +..++..-|..+..+.. ..++
T Consensus 50 ~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFR-ip~vm~~sGa~lvEVGttN~t~~~ 127 (367)
T PF03841_consen 50 AHVEELLCELTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFR-IPDVMRQSGARLVEVGTTNRTHLS 127 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 3578889999999999999999999988887775 5778888763 3455443 23456666776666543 3578
Q ss_pred HHHHhccCCCceEEEEeCCCCCC--cc--cccHHHHHHHHHhcCCEEEEeCCCC------------CCCccchhccCCcE
Q 012321 287 GLEAALNNNNVSLFFTESPTNPF--LR--CVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLGADL 350 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPt--G~--v~dl~~I~ela~~~gillIvD~t~a------------~~~~~~pl~~gaDi 350 (466)
+++++|+++ |.+++--+++|.. |. -.+++++++++|+|++++++|-.-+ .+..+..+..|+|+
T Consensus 128 Dye~AI~e~-Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDl 206 (367)
T PF03841_consen 128 DYEKAITEN-TAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADL 206 (367)
T ss_dssp ----------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SE
T ss_pred ccccccccc-ccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCE
Confidence 999999985 8888777888874 22 3589999999999999999998741 12334556789999
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHH----------------hhHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----------------GMKTLHLRVQQQN 414 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lr----------------gL~tl~~R~e~~~ 414 (466)
|++|.-|.+|||. +|+++|++++++++++....-....+-..-..+.. -++.+....+...
T Consensus 207 V~fSGdKlLGGPQ---aGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~ 283 (367)
T PF03841_consen 207 VTFSGDKLLGGPQ---AGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELR 283 (367)
T ss_dssp EEEETTSSSSS-S----EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-------------------------
T ss_pred EEEECCCcCCCCC---eEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 9999999999996 89999999999999864322221122211111111 1222334456667
Q ss_pred HHHHHHHHHHHcCCC
Q 012321 415 STALRMAKILEAHPK 429 (466)
Q Consensus 415 ~na~~La~~L~~~p~ 429 (466)
+.+++|+..|+....
T Consensus 284 ~rA~~l~~~l~~~~~ 298 (367)
T PF03841_consen 284 ARAERLAAQLKAALG 298 (367)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 778888888777543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-12 Score=128.96 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=147.7
Q ss_pred ccCCCCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhccC-----CCEEEEcCCCccc-hHHHH--------H
Q 012321 203 EYGRYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVPA-----GGHIVTTTDCYRK-TRIFI--------E 267 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all~p-----GD~VLv~~~~y~~-t~~~~--------~ 267 (466)
.-.-|.++...+|.++|+++.+ .+.+++++||++|+..++....+- ..+||.....|++ |...+ .
T Consensus 77 ~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~ 156 (404)
T COG4992 77 VSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYR 156 (404)
T ss_pred cccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhc
Confidence 3344568999999999999996 889999999999999998754322 2378888888776 22111 1
Q ss_pred hhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CC
Q 012321 268 TVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PL 339 (466)
Q Consensus 268 ~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~----~~ 339 (466)
..+...--.+++++..|+++++++|+++ |.+|++|...--.|.+.+ ++++.++|++||++||.||++.. +-
T Consensus 157 ~~F~Pl~~g~~~vpfnDi~al~~ai~~~-taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk 235 (404)
T COG4992 157 KGFGPLLPGFRHVPFNDIEALEAAIDED-TAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK 235 (404)
T ss_pred cCCCCCCCCceecCCCCHHHHHHHhccC-eEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch
Confidence 1111111245667778999999999984 999999999988887764 78999999999999999999753 22
Q ss_pred cc--chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH--HHHHhCCCchHHHHHHHHHhhHHHH--HHHHHH
Q 012321 340 NQ--KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQ 413 (466)
Q Consensus 340 ~~--~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~--~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~ 413 (466)
+. .-...-.||++ +.|.+||. +..|.++.++++.+.+.. ....+|+ +|+.+..+...++.+. .-+++.
T Consensus 236 ~fA~e~~gV~PDI~t--laK~LgGG--~PigA~la~~~~~~~~~~G~HgSTfGG--NpLacAv~~a~l~~l~~e~ll~~v 309 (404)
T COG4992 236 LFAYEHYGVEPDILT--LAKALGGG--FPIGAMLATEEIASAFTPGDHGSTFGG--NPLACAVALAVLEVLLEEGLLENV 309 (404)
T ss_pred HHHHHHhCCCCCEEE--eeccccCC--ccceeeEEchhhhhcCCCCcccCCCCc--CHHHHHHHHHHHHHHcchhHHHHH
Confidence 21 11222357765 78999987 456777777554544332 1223444 5676666666666553 234555
Q ss_pred HHHHHHHHHHHHcC
Q 012321 414 NSTALRMAKILEAH 427 (466)
Q Consensus 414 ~~na~~La~~L~~~ 427 (466)
++....+.+.|++.
T Consensus 310 ~~~g~~~~~~L~~l 323 (404)
T COG4992 310 REKGEYLLQRLREL 323 (404)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555666666553
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-11 Score=126.41 Aligned_cols=225 Identities=15% Similarity=0.156 Sum_probs=143.2
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---c------C------CCEEEEcCCCccchHHHHHhhcc
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---P------A------GGHIVTTTDCYRKTRIFIETVLP 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all---~------p------GD~VLv~~~~y~~t~~~~~~~l~ 271 (466)
+.++...+|.++|.++.+.+.+.+++||++|+..++.... . + ..+||.....|++.......+-.
T Consensus 54 ~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~ 133 (382)
T PLN00144 54 YHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTS 133 (382)
T ss_pred ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCC
Confidence 4477788899999988766788899999999998887432 1 0 24688888888774322111100
Q ss_pred ------cC---CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc--c--HHHHHHHHHhcCCEEEEeCCCCCC
Q 012321 272 ------KM---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV--D--VKLVSDLCHKKGAIVCIDGTFATP 338 (466)
Q Consensus 272 ------~~---gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~--d--l~~I~ela~~~gillIvD~t~a~~ 338 (466)
.+ --.+.+++..|++.+++.+..+++++|++|...||.|... . +++|.++|++||+++|+||++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~ 213 (382)
T PLN00144 134 KEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGL 213 (382)
T ss_pred CccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 00 0124456667899999988655689999998888855443 3 789999999999999999997532
Q ss_pred C-ccc-----hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH-----H
Q 012321 339 L-NQK-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL-----H 407 (466)
Q Consensus 339 ~-~~~-----pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl-----~ 407 (466)
. ... ......| +.+++|.+++. ...|++++++++++.+...........+|..+..++..|+.+ .
T Consensus 214 gr~g~~~~~~~~~~~PD--i~t~sK~l~~G--~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~ 289 (382)
T PLN00144 214 GRTGYLWAHEAYGVEPD--IMTLAKPLAGG--LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFL 289 (382)
T ss_pred CccchHhhhhhcCCCCC--EEEecccccCC--cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHH
Confidence 1 111 1222356 66789999864 468999999998887753222222234566555555344333 2
Q ss_pred HHHHHHHHH-HHHHHHHHHcCCCcEEEeC
Q 012321 408 LRVQQQNST-ALRMAKILEAHPKVKRVHY 435 (466)
Q Consensus 408 ~R~e~~~~n-a~~La~~L~~~p~V~~V~~ 435 (466)
.++++..+. .+.+.+.+.++|.+..|..
T Consensus 290 ~~~~~~g~~l~~~l~~~~~~~~~~~~vrg 318 (382)
T PLN00144 290 ASVAKKGEYLRELLRRKLGGNPHVKEVRG 318 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeeec
Confidence 222222221 2334445566766655543
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=131.55 Aligned_cols=225 Identities=18% Similarity=0.228 Sum_probs=147.9
Q ss_pred CchhHHHHHHH----HHhhhCCC---------cEEEeCCHHHHHHHHHHHhc--------cCC-----C-EEEEcCCCcc
Q 012321 208 GNPTTVVVEEK----MSALEGAE---------STVIMASGMSASTVMLLALV--------PAG-----G-HIVTTTDCYR 260 (466)
Q Consensus 208 ~~p~~~~Lee~----lA~l~g~e---------~~v~~~SG~aAi~~al~all--------~pG-----D-~VLv~~~~y~ 260 (466)
..|....+|+. +++++|.+ ..+++++|++++..++.+.. ..| . .|++++..|.
T Consensus 73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~ 152 (373)
T PF00282_consen 73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY 152 (373)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T
T ss_pred cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 45666666554 56666754 47888899988877765432 112 2 5777777887
Q ss_pred chHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCC----C-ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEE
Q 012321 261 KTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN----N-VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330 (466)
Q Consensus 261 ~t~~~~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~----~-tklV~lesPsNPtG~v~dl~~I~ela~~~gillI 330 (466)
+.. +.+..+|+.++.++. .|+++|+++|++. + +-+|+....+..+|.+-|+++|.++|++++++++
T Consensus 153 S~~----Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlH 228 (373)
T PF00282_consen 153 SIE----KAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLH 228 (373)
T ss_dssp HHH----HHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEE
T ss_pred HHH----HhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeee
Confidence 754 444556776666642 4788888877532 1 3367777788889999999999999999999999
Q ss_pred EeCCCCCCCcc----chhc---cCCcEEEeccccccccccCceEEEEEeCh-HHHHHHH----HHHH-------------
Q 012321 331 IDGTFATPLNQ----KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIR----NLHH------------- 385 (466)
Q Consensus 331 vD~t~a~~~~~----~pl~---~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~----~~~~------------- 385 (466)
||.+|+..... +... ..+|-+..++||+++.+-+ .|+++.++ ..+.... .+..
T Consensus 229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~ 306 (373)
T PF00282_consen 229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG 306 (373)
T ss_dssp EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred ecccccccccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence 99999874332 2222 2479999999999998864 57766654 3333211 0000
Q ss_pred Hh----CCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 386 VL----GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 386 ~~----G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
.. +-....+..|+.++ |.+.+..++++..+.++++++.|+++|.++.+.-|.+
T Consensus 307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~ 365 (373)
T PF00282_consen 307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDL 365 (373)
T ss_dssp EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSS
T ss_pred cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCc
Confidence 00 01123456777665 7788999999999999999999999999877665544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=128.86 Aligned_cols=228 Identities=18% Similarity=0.169 Sum_probs=143.4
Q ss_pred CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhcc----CC-----CEEEEcCCCccchHH-HHHhhc-c---
Q 012321 207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP----AG-----GHIVTTTDCYRKTRI-FIETVL-P--- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~all~----pG-----D~VLv~~~~y~~t~~-~~~~~l-~--- 271 (466)
+.++...+|.++|.++.+. +.+.+++||++|+..++..... .| .+||.....|++... .+...- .
T Consensus 79 ~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~ 158 (408)
T PRK04612 79 FYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQ 158 (408)
T ss_pred cCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccc
Confidence 4567778888998887643 6788889999999988865331 12 368888888877432 221100 0
Q ss_pred -cC---CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc-----HHHHHHHHHhcCCEEEEeCCCCCC-C--
Q 012321 272 -KM---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-----VKLVSDLCHKKGAIVCIDGTFATP-L-- 339 (466)
Q Consensus 272 -~~---gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d-----l~~I~ela~~~gillIvD~t~a~~-~-- 339 (466)
.+ .-.+..++..|++.+++.++++++.+|++ .|.+++|.+.. +++|.++|+++|+++|+||++... .
T Consensus 159 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~-eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G 237 (408)
T PRK04612 159 EGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVML-EPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG 237 (408)
T ss_pred cCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence 01 11234566678999999997555667766 56666665542 789999999999999999997531 1
Q ss_pred -ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH
Q 012321 340 -NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST 416 (466)
Q Consensus 340 -~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~n 416 (466)
.......+.+..+.+++|.+++. ...|++++++++++.+...........+|..+..++..|+.+. ..+++..+.
T Consensus 238 ~~~a~~~~~~~pdi~t~~K~l~~G--~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~ 315 (408)
T PRK04612 238 TLFAHWQEQVTPDIVTLAKALGGG--FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQ 315 (408)
T ss_pred chhhhhhcCCCCCEEEEcchhcCC--CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11111234555667889999853 3567778888887776543222222345666666665555543 234445555
Q ss_pred HHHHHHHHHc----CCCcEEEeCCC
Q 012321 417 ALRMAKILEA----HPKVKRVHYPG 437 (466)
Q Consensus 417 a~~La~~L~~----~p~V~~V~~Pg 437 (466)
.+++.+.|++ ++.+..|...|
T Consensus 316 g~~l~~~l~~l~~~~~~i~~vrg~G 340 (408)
T PRK04612 316 SAALRAGLEALNAEFGVFAQVRGRG 340 (408)
T ss_pred HHHHHHHHHHHHhhCCCeeeeeccc
Confidence 5555555544 45555555444
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=132.41 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeC-CHHHHHHHHHHHhccC-CCEEEEcCCCccchHHHHHhhcccCCc-EEEEeCC-
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMA-SGMSASTVMLLALVPA-GGHIVTTTDCYRKTRIFIETVLPKMGI-TATVIDP- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~-SG~aAi~~al~all~p-GD~VLv~~~~y~~t~~~~~~~l~~~gi-~v~~vd~- 282 (466)
...++.++.+++++|.+ ++++++ ||+.++++++.+++++ ++.|++ ...|+.. +.....+++|+ +++.+..
T Consensus 48 ~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~--~~~~~~~~~g~~~v~~~~~~ 124 (378)
T PRK03080 48 ALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK--WATDVVKQLKLEDPRVLEAD 124 (378)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH--HHHHHHhhcCCCCceEeccC
Confidence 45677799999999962 466665 8899999999999875 455555 5566653 23222355677 7776642
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 358 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~ 358 (466)
.|+++ ++. +++|.+++.+|.||.+.|+++|++ |++|+++++|.+++.+...-... .+|+++.|.+|+
T Consensus 125 ~g~~~d~~~----i~~--~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~-~iD~~~~s~~K~ 195 (378)
T PRK03080 125 YGSLPDLSA----VDF--DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS-KLDVYTFSWQKV 195 (378)
T ss_pred CCCCCCHhh----cCC--CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHH-HCcEEEEehhhh
Confidence 24444 332 567889899999999999999999 88999999999987654322222 279999999999
Q ss_pred cccccCceEEEEEeChHHHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~ 381 (466)
|+++. ..|+++.++++++++.
T Consensus 196 l~~P~--G~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 196 LGGEG--GHGMAILSPRAVERLE 216 (378)
T ss_pred CCCCC--ceEEEEECHHHHHhhh
Confidence 98854 2689999988887665
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=127.60 Aligned_cols=208 Identities=20% Similarity=0.260 Sum_probs=149.2
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH-
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME- 286 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e- 286 (466)
.....+.||.+||++.+.|++++++++-.|+..++-+++.|.|-|+...-.|.+...-+ .++++++ .+|..|++
T Consensus 110 tq~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGi-rLckry~----h~dv~~l~~ 184 (417)
T KOG1359|consen 110 TQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGI-RLCKRYR----HVDVFDLEH 184 (417)
T ss_pred chHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhh-HHHhhhc----cchhHHHHH
Confidence 34567899999999999999999999999999999999999999988777776644333 2334332 22333333
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch-------h--ccCCcEEEecccc
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-------L--SLGADLVLHSATK 357 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p-------l--~~gaDivv~S~sK 357 (466)
.+.++.+- +-++|.....-+..|.+.|+++|++++++||.+|++||+++++++... + .-.+|++..+++|
T Consensus 185 ~l~~a~k~-r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgK 263 (417)
T KOG1359|consen 185 CLISACKM-RLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGK 263 (417)
T ss_pred HHHHhhhh-eEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhh
Confidence 22233332 478999988889999999999999999999999999999988765221 1 1236899999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNA------AYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~------A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+||.. ||+..+++++++-|+...+ .+...++|.. ++-++..- ...+++.+.+.+++.++++..
T Consensus 264 AlGga~---GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s---~~~i~~~~a~~qrfr~~me~a 335 (417)
T KOG1359|consen 264 ALGGAS---GGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS---SKEIQSRQANTQRFREFMEAA 335 (417)
T ss_pred hhcCCC---CCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhc
Confidence 999874 8999999999998876443 3445555432 22222222 223445556777777777654
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=130.64 Aligned_cols=220 Identities=21% Similarity=0.189 Sum_probs=150.6
Q ss_pred HHHHHHHHHhhhCC-C--cEEEeCCHHHHHHHHHHHhcc-----C---CC------EEEEcCCCccchHHHHHhhcccCC
Q 012321 212 TVVVEEKMSALEGA-E--STVIMASGMSASTVMLLALVP-----A---GG------HIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 212 ~~~Lee~lA~l~g~-e--~~v~~~SG~aAi~~al~all~-----p---GD------~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
-+++-..++++++. + ...++++|++|+..++++... . +. +|+++...|.+..... ..+|
T Consensus 103 E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa----~~lG 178 (460)
T COG0076 103 EERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA----RYLG 178 (460)
T ss_pred HHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH----HHhC
Confidence 33444556667776 2 467888888998877765421 1 11 6999998888865443 3345
Q ss_pred cEEEEeC------CCCHHHHHHhccCCCceE--EEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---cch
Q 012321 275 ITATVID------PADMEGLEAALNNNNVSL--FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKA 343 (466)
Q Consensus 275 i~v~~vd------~~D~e~Le~ai~~~~tkl--V~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~---~~p 343 (466)
++.+.+. ..|+++|+++|+++ +.. |+....+-++|.+-|+++|+++|++++++++||.+|+..+. ...
T Consensus 179 ~~~~~v~~~~~~~~id~~~l~~~i~~~-t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 179 LGLRRVPTVPTDYRIDVDALEEAIDEN-TIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred CCceeEEeccCccccCHHHHHHHHHhh-ccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 5443332 34899999999986 554 77778899999999999999999999999999999886543 111
Q ss_pred ----hc-cCCcEEEeccccccccccCceEEEEEeC-hH-HHHHHHHHHHHhCC-----------Cc--hHHHHHHHHHh-
Q 012321 344 ----LS-LGADLVLHSATKFIGGHNDVLAGSISGS-GK-LVTQIRNLHHVLGG-----------AL--NPNAAYLIIRG- 402 (466)
Q Consensus 344 ----l~-~gaDivv~S~sK~lgG~gdv~gG~vvg~-~e-li~~l~~~~~~~G~-----------~l--s~~~A~l~lrg- 402 (466)
.. .++|.++.++|||+..+-+ +|+++.+ ++ +.+.+......+++ -. ..+.+|..++.
T Consensus 258 ~~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~l 335 (460)
T COG0076 258 GRWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRL 335 (460)
T ss_pred chhhcCCCCceEEEECcccccCCCCC--ceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHh
Confidence 11 2689999999999887753 4666554 43 33333322222221 11 23456766554
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 403 -MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 403 -L~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
.+.+...+++..++++++++.|++.+..+-+.-|.+
T Consensus 336 G~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l 372 (460)
T COG0076 336 GREGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL 372 (460)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCcc
Confidence 477888889999999999999999876666665544
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=125.66 Aligned_cols=178 Identities=21% Similarity=0.351 Sum_probs=140.2
Q ss_pred cCCCccCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcCC-CccchHHHH------Hh
Q 012321 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTTD-CYRKTRIFI------ET 268 (466)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~---~~SG~aAi~~al~all~pGD~VLv~~~-~y~~t~~~~------~~ 268 (466)
+.+|.|... -++.|++..|+.+|+|.+++ +-||+.||..+|..+++|||+.+.... .|......+ ..
T Consensus 57 stGYGydD~---GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~g 133 (416)
T COG4100 57 STGYGYDDL---GRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQG 133 (416)
T ss_pred CCCCCcccc---chhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcc
Confidence 456777644 47789999999999988775 679999999999999999999886542 243322222 11
Q ss_pred hcccCCcEEEEeCC-----CCHHHHHHhccCCCceEEEEeCCC----CCCcccccHHHHHHHHHhc--CCEEEEeCCCCC
Q 012321 269 VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHKK--GAIVCIDGTFAT 337 (466)
Q Consensus 269 ~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~tklV~lesPs----NPtG~v~dl~~I~ela~~~--gillIvD~t~a~ 337 (466)
.++.+||..+-++. .|.+.+..+++++ ||+|.+.... -|...+.+|+++.++.|+. ++++.|||+|+.
T Consensus 134 SL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~-tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE 212 (416)
T COG4100 134 SLKDFGIKYKAVPLTADGKIDIQAVKTAISDR-TKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE 212 (416)
T ss_pred cHHHhCcceeecccccCCcccHHHHHHhcCcc-ceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence 25567887777764 3899999999985 9999996643 4667778899999999884 699999999998
Q ss_pred CCc-cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHH
Q 012321 338 PLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 380 (466)
Q Consensus 338 ~~~-~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l 380 (466)
++- ..|...|+|++..|+-|-.||.--..||++.+++++++..
T Consensus 213 FvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 213 FVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred hhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhh
Confidence 765 5678889999999999999887655689999999998764
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=127.31 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=132.6
Q ss_pred hHHHHHHHHHhhh-CC-C-cEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccch-HHHHHhh-c----ccCCc---E
Q 012321 211 TTVVVEEKMSALE-GA-E-STVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKT-RIFIETV-L----PKMGI---T 276 (466)
Q Consensus 211 ~~~~Lee~lA~l~-g~-e-~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t-~~~~~~~-l----~~~gi---~ 276 (466)
....+++.+++.+ +. + .+++++||++|+..++.... ..+++|++.+..|++. ...+... . ..++. .
T Consensus 67 ~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~ 146 (375)
T PRK04260 67 YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPH 146 (375)
T ss_pred cCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCC
Confidence 3345566666543 22 2 35678999999998877652 4567888888887763 2222110 0 11111 1
Q ss_pred EEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc-cch-----hcc
Q 012321 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-QKA-----LSL 346 (466)
Q Consensus 277 v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~-~~p-----l~~ 346 (466)
+.+.+..|++.+++.++++ +++|++|.++|++|.+.+ +++|.++|+++|+++|+|+++..... ..+ ...
T Consensus 147 ~~~~~~~dl~~l~~~l~~~-~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~ 225 (375)
T PRK04260 147 FSYAIFNDLNSVKALVNKN-TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI 225 (375)
T ss_pred eEEeCCCCHHHHHHhcCCC-eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC
Confidence 2333446899999988764 899999999999998765 89999999999999999999753111 111 112
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH----HHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST----ALRM 420 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~n----a~~L 420 (466)
..|++ |++|.+++. ...|++++++++.+.+...........++..+..+...++.+. ..+++..++ .+.+
T Consensus 226 ~pdi~--t~sK~l~~G--~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l 301 (375)
T PRK04260 226 EPDIF--TLAKGLANG--VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQL 301 (375)
T ss_pred CCCEE--EecccccCC--cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35654 799999853 4579999999888776532211112224554444444443321 223333333 3345
Q ss_pred HHHHHcCCCcEEE
Q 012321 421 AKILEAHPKVKRV 433 (466)
Q Consensus 421 a~~L~~~p~V~~V 433 (466)
.+.+.+++.+..+
T Consensus 302 ~~~~~~~~~~~~~ 314 (375)
T PRK04260 302 QKALQDKETVTTV 314 (375)
T ss_pred HHHHhhCCCeeEE
Confidence 5555566655444
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=127.48 Aligned_cols=205 Identities=10% Similarity=0.063 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHhhhCC--C-cEEEeCC-HHHHHHHHHHHhcc---CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGA--E-STVIMAS-GMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e-~~v~~~S-G~aAi~~al~all~---pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...++.++.+++++|. + +++++++ |++++.+++..++. +||+|++ ..|+. . ....+++.|+++++++.
T Consensus 44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~--g~~~~--~-~~~~a~~~g~~~~~~~~ 118 (355)
T cd00611 44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT--GAWSA--K-AAKEAKRYGGVVVIVAA 118 (355)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC--CHHHH--H-HHHHHHhcCCCcEEEec
Confidence 5577889999999995 2 3555545 78999999999987 5666654 12221 1 12345677888777653
Q ss_pred C------C-HHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 283 A------D-MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 283 ~------D-~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
. + ++..+..+++ ++++|.+.+-+|.||...+ ++++.+|++++||.+++.+.. .+..++ |+++.|
T Consensus 119 ~~~g~~~~~~~~~~~~~~~-~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~--~~~~ss 190 (355)
T cd00611 119 KEEGKYTKIPDVETWDLAP-DAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKF--GVIYAG 190 (355)
T ss_pred ccccCCCCCCCHhhcCCCC-CCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHh--CEEEee
Confidence 2 3 2333344555 4999999999999999743 445569999999999876543 333333 466777
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHH-------HH--Hh---CCCchHHHHHHHHHhhHH------HHHHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH--VL---GGALNPNAAYLIIRGMKT------LHLRVQQQNST 416 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~--~~---G~~ls~~~A~l~lrgL~t------l~~R~e~~~~n 416 (466)
.+|++|.+| .|+++.++++++++... .. .. -++.+-...+.+..+++. ++.+.+++++.
T Consensus 191 ~~K~lGP~G---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l 267 (355)
T cd00611 191 AQKNLGPAG---VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQK 267 (355)
T ss_pred cccccCCCc---eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998665 68888888877664421 10 00 122222233333333433 44556677788
Q ss_pred HHHHHHHHHcCCCc
Q 012321 417 ALRMAKILEAHPKV 430 (466)
Q Consensus 417 a~~La~~L~~~p~V 430 (466)
++++.++|++.|++
T Consensus 268 ~~~l~~~l~~~~gl 281 (355)
T cd00611 268 AQLLYDTIDNSNGF 281 (355)
T ss_pred HHHHHHHHHhCccc
Confidence 89999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-11 Score=135.78 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeC-CHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALEGAESTVIMA-SGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~-SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
....+|++.++++.|.+.+-+.. +|+.+..+.++++.. + .++||++...|+.+... +...|+++..+
T Consensus 543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas----a~~~GieVv~V 618 (954)
T PRK12566 543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS----AQMAGMRVVIV 618 (954)
T ss_pred HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH----HHHCCCEEEEe
Confidence 34678899999999998887776 777777666666432 2 36788999889765432 34468888877
Q ss_pred CC-----CCHHHHHHhccC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC--CCccchhccCCcEE
Q 012321 281 DP-----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLV 351 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~--~~~~~pl~~gaDiv 351 (466)
+. .|+++|++.+++ .++.+|++.+|++-.+...|+++|++++|++|+++++|.+... .....|.++|+|++
T Consensus 619 p~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~ 698 (954)
T PRK12566 619 ECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVS 698 (954)
T ss_pred ccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEE
Confidence 64 489999999872 2488999999987666666799999999999999999999753 23345788999999
Q ss_pred Eecccccccccc
Q 012321 352 LHSATKFIGGHN 363 (466)
Q Consensus 352 v~S~sK~lgG~g 363 (466)
+.+++|+|++|-
T Consensus 699 ~~s~HKtf~~P~ 710 (954)
T PRK12566 699 HMNLHKTFCIPH 710 (954)
T ss_pred EecCCcccCcCc
Confidence 999999998554
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-11 Score=124.19 Aligned_cols=213 Identities=11% Similarity=0.054 Sum_probs=136.7
Q ss_pred CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc------CC-CEEEEcCCCccch-HHHHHhhcccC----
Q 012321 206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------AG-GHIVTTTDCYRKT-RIFIETVLPKM---- 273 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~------pG-D~VLv~~~~y~~t-~~~~~~~l~~~---- 273 (466)
.+.++...+|.++|.+..+.+.+++++||++|+..++..... +| ++||..+..|++. ...+. .....
T Consensus 74 ~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~-~s~~~~~~~ 152 (395)
T PRK03715 74 AFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMS-ASGKPGWDT 152 (395)
T ss_pred cccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHh-hcCCccccc
Confidence 344666778888888766667899999999999998876641 23 5788888777663 22221 11100
Q ss_pred -----CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CCc
Q 012321 274 -----GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLN 340 (466)
Q Consensus 274 -----gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~----~~~ 340 (466)
-..+..++..|++++++.+.++ +++|++|...+..|.+.+ +++|.++|+++|+++|+||++.. +..
T Consensus 153 ~~~~~~~~~~~~~~~d~~~l~~~l~~~-~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~ 231 (395)
T PRK03715 153 IFAPQVPGFPKAELNDIASVEKLITDK-TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTL 231 (395)
T ss_pred CCCCCCCCceeeCCchHHHHHHHcCCC-ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcch
Confidence 0012223346789999999764 899999988877788776 99999999999999999999763 111
Q ss_pred --cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-HHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012321 341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS 415 (466)
Q Consensus 341 --~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~ 415 (466)
........|++ +++|.+++. ...|.+++++++....... ...+ ..+|..+..++..|+.+. ..+++..+
T Consensus 232 ~a~~~~gv~PDi~--t~gK~lg~G--~p~~av~~~~~i~~~~~~~~~~T~--~g~pl~~aaala~L~~l~~~~l~~~~~~ 305 (395)
T PRK03715 232 FAYELSGIEPDIM--TLGKGIGGG--VPLAALLAKAEVAVFEAGDQGGTY--NGNPLMTAVGVAVISQLLAPGFLEGVRA 305 (395)
T ss_pred hhHhhcCCCCcee--eehhhhhCC--cceEEEEEccccccccCCCcCCCC--CCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12222346775 467999874 3456777877775211111 0111 234666555555555543 34556666
Q ss_pred HHHHHHHHHHc
Q 012321 416 TALRMAKILEA 426 (466)
Q Consensus 416 na~~La~~L~~ 426 (466)
...++.+.|++
T Consensus 306 ~g~~l~~~L~~ 316 (395)
T PRK03715 306 RGEYLKEKLLE 316 (395)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=134.43 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.-...+.++..|+++|++...++.+|+ .++.+++++++.+||.||+++++|.+.+.. +...|+...++.+
T Consensus 194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~a----Lilsga~PVYl~P~~n~~ 269 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHL----LMMSDVVPIWLKPTRNAL 269 (713)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHH----HHHcCCeeEEeccccccc
Confidence 445778899999999999999999998 899999999999999999999999986643 3344666655532
Q ss_pred -----CC-----HHHHHHhccCC----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEE-EEeCCCCCCCcc------
Q 012321 283 -----AD-----MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTFATPLNQ------ 341 (466)
Q Consensus 283 -----~D-----~e~Le~ai~~~----~tklV~lesPsNPtG~v~dl~~I~ela~~~gill-IvD~t~a~~~~~------ 341 (466)
.+ .+.|+++|+++ +++++++.+|+ ..|.+.|+++|.++| |+.+ ++||+|+....+
T Consensus 270 Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~ 345 (713)
T PRK15399 270 GILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQG 345 (713)
T ss_pred CCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCC
Confidence 23 38888888643 23688898886 789999999999999 6666 699998753322
Q ss_pred -chhcc--CCcEE---EeccccccccccCceEEEEEeChHHH-HHHHHHHHHhCCC
Q 012321 342 -KALSL--GADLV---LHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGA 390 (466)
Q Consensus 342 -~pl~~--gaDiv---v~S~sK~lgG~gdv~gG~vvg~~eli-~~l~~~~~~~G~~ 390 (466)
.++.. |+|.+ ++|.||.+++.+ .+.++..+..+- ++++.....+.++
T Consensus 346 ~sam~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~vd~~~~n~a~~m~~ST 399 (713)
T PRK15399 346 KSGMSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGEYDEETFNEAFMMHTST 399 (713)
T ss_pred cChhhCCCCCCeeeeeeeehhccccccc--hheeeeecCCCCHHHHHHHHHHHcCC
Confidence 22323 57877 999999999887 567776544322 4555555544433
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=126.94 Aligned_cols=212 Identities=11% Similarity=0.058 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHhhhCC--C-cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 210 PTTVVVEEKMSALEGA--E-STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e-~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
...+..++.++++++. + +++++ +||+.++..++.+++.+ +.+++....|+.............+ ++..++....
T Consensus 41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 118 (361)
T TIGR01366 41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG 118 (361)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence 4567789999999997 2 34554 55889999999988743 3444555666654433333322233 4444443222
Q ss_pred HHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCc
Q 012321 286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDV 365 (466)
Q Consensus 286 e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv 365 (466)
+.++..+.+ ++++|.+.+-.|.||.+.|+++| +|++|+++++|.+.+.+...-..+. +|+++.|.+|++++++.
T Consensus 119 ~~~~~~~~~-~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-~D~~~~s~~K~lg~~~G- 192 (361)
T TIGR01366 119 SAPEPQADP-GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-TDVYYFAPQKNFASDGG- 192 (361)
T ss_pred CCCCCccCC-CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-CCEEEEEchhhcCCCCc-
Confidence 344444555 49999999999999999999888 5889999999999876543222232 89999999999999862
Q ss_pred eEEEEEeChHHHHHHHHHHH-------H------h--------CCCchHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 012321 366 LAGSISGSGKLVTQIRNLHH-------V------L--------GGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL 418 (466)
Q Consensus 366 ~gG~vvg~~eli~~l~~~~~-------~------~--------G~~ls~~~A~l~lrgL~t------l~~R~e~~~~na~ 418 (466)
.++++.++++++++..... . . ..+.+....+.+...++. ++.+.+++.+.++
T Consensus 193 -l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~ 271 (361)
T TIGR01366 193 -LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSS 271 (361)
T ss_pred -eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4666778887766652110 0 0 111111211122222222 4455677888888
Q ss_pred HHHHHHHcCCCc
Q 012321 419 RMAKILEAHPKV 430 (466)
Q Consensus 419 ~La~~L~~~p~V 430 (466)
++.++|++.+.+
T Consensus 272 ~l~~~l~~~~~~ 283 (361)
T TIGR01366 272 RLYSWAQERPYA 283 (361)
T ss_pred HHHHHHHhCCCc
Confidence 899888888753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.6e-12 Score=137.12 Aligned_cols=172 Identities=13% Similarity=0.185 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.-...+.++..|+++|++...++++|+ .++.+++++++.+||.||+++++|.+.+.. +...|+...++.+
T Consensus 194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~ha----Lilsga~PVYl~P~rn~~ 269 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHL----MMMSDVTPIYFRPTRNAY 269 (714)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHH----HHHcCCeEEEeccccccc
Confidence 445788899999999999999999998 899999999999999999999999986643 3344666555532
Q ss_pred -----CC-----HHHHHHhccCC-Cce---EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-------c
Q 012321 283 -----AD-----MEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------Q 341 (466)
Q Consensus 283 -----~D-----~e~Le~ai~~~-~tk---lV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-------~ 341 (466)
.+ .+.|+++|+++ +.+ .+++.+|+ ..|.++|++.|.++|+.++ +++||+|+.... .
T Consensus 270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~ 346 (714)
T PRK15400 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK 346 (714)
T ss_pred CCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCc
Confidence 13 78899888653 123 68887885 7899999999999999887 689999875432 2
Q ss_pred chhccCC---c--EEEeccccccccccCceEEEEEeChHH-HHHHHHHHHHhCC
Q 012321 342 KALSLGA---D--LVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGG 389 (466)
Q Consensus 342 ~pl~~ga---D--ivv~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~~~~~~G~ 389 (466)
.++..|+ | ++++|.||.+++.+ .+.++..+..+ .++++.....+.+
T Consensus 347 sam~~ga~~~~~i~vtQStHKtL~alT--QaS~LHvkg~vd~~~~n~a~~m~~S 398 (714)
T PRK15400 347 CGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTT 398 (714)
T ss_pred ChhhcCCCCCCceEEEEchhhcccchh--HHhHHHHcCCCCHHHHHHHHHHHcC
Confidence 3344566 5 99999999999876 44454333222 1345554444443
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-11 Score=125.25 Aligned_cols=223 Identities=19% Similarity=0.209 Sum_probs=143.5
Q ss_pred CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhh-------cc-c--C
Q 012321 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------LP-K--M 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~-g~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~-------l~-~--~ 273 (466)
+.++....|.++|+++. +.+.+++++||++|+..++..... .+++||..++.|++........ +. . .
T Consensus 87 ~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 166 (426)
T PRK00062 87 APTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP 166 (426)
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence 35677788999999876 456788889999999999886543 3678999999998854222111 00 0 0
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012321 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--- 338 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~--- 338 (466)
++ ....++..|++++++.++. .++++|++|.....+|.+.+ +++|.++|++||+++|+||++...
T Consensus 167 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g 246 (426)
T PRK00062 167 GVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA 246 (426)
T ss_pred CCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC
Confidence 11 1223344578899888853 24889999966666888887 899999999999999999997522
Q ss_pred Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH---HHhCCCchHHHHHHHHHhhHHHHH--HHH
Q 012321 339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLHL--RVQ 411 (466)
Q Consensus 339 ~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~---~~~G~~ls~~~A~l~lrgL~tl~~--R~e 411 (466)
.. ........|+ .+++|.+++. . ..|++++++++++.++... .......++..+..++..|+.+.. ..+
T Consensus 247 ~~~~~~~~~~~pDi--~~~gK~l~~G-~-p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~ 322 (426)
T PRK00062 247 LGGAQGYYGVTPDL--TTLGKIIGGG-L-PVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYE 322 (426)
T ss_pred CccHHHHhCCCcch--HhhhhHhhCC-C-cceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHH
Confidence 11 1111122454 5789999853 3 3577788889888875221 111123456666555555555433 445
Q ss_pred HHHHHHHHHHHHHH----cCCCcEEE
Q 012321 412 QQNSTALRMAKILE----AHPKVKRV 433 (466)
Q Consensus 412 ~~~~na~~La~~L~----~~p~V~~V 433 (466)
+..+..+++.+.|+ +++.+..+
T Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~v 348 (426)
T PRK00062 323 ELEALTKRLAEGLKEAAKKAGIPLTV 348 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 55555555555554 45654434
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-11 Score=122.50 Aligned_cols=237 Identities=17% Similarity=0.232 Sum_probs=149.9
Q ss_pred CCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCccchHH-HHH------
Q 012321 205 GRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRI-FIE------ 267 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~--g~e~~v~~~SG~aAi~~al~all--------~pGD~VLv~~~~y~~t~~-~~~------ 267 (466)
..+.++...+|.++|.++. +.+.+.+..||++|+..++.... ....+|+.....|++... .+.
T Consensus 54 ~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~ 133 (339)
T PF00202_consen 54 SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP 133 (339)
T ss_dssp TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred cceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence 5567889999999999999 44778889999999999887554 234789999988887321 111
Q ss_pred --hhcccCCcEEEEeCCCCHHH----------HHH---hccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012321 268 --TVLPKMGITATVIDPADMEG----------LEA---ALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI 328 (466)
Q Consensus 268 --~~l~~~gi~v~~vd~~D~e~----------Le~---ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gil 328 (466)
.........+..++..++.. +++ ....+++.+|++|......|.... +++|.++|+++|++
T Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil 213 (339)
T PF00202_consen 134 YRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL 213 (339)
T ss_dssp HHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred ccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence 11112222344555555444 222 222335899999987766665542 79999999999999
Q ss_pred EEEeCCCCCC------CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012321 329 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG 402 (466)
Q Consensus 329 lIvD~t~a~~------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg 402 (466)
+|+||++... ..........|+++. +|.+++. ...|.+++++++.+.+..........-+|..+..++..
T Consensus 214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~gG--~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~ 289 (339)
T PF00202_consen 214 LIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLGGG--LPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALAT 289 (339)
T ss_dssp EEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGGTT--SSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHH
T ss_pred eecccccccccccCCccceecccccCccccc--ccchhhh--hhcccccccchhhccccccccccccccchHhhhhhhhH
Confidence 9999996532 112334455799886 4999986 46788888888877653322111122356666665555
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHHc----CCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEec
Q 012321 403 MKTLHLR--VQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463 (466)
Q Consensus 403 L~tl~~R--~e~~~~na~~La~~L~~----~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~ 463 (466)
|+.+... .++..+...++.+.|++ +|.|..| +|.|.|++|||.
T Consensus 290 l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~~ie~~ 338 (339)
T PF00202_consen 290 LEILEEEDLLERVRELGERLREGLRELAARYPLIGEV------------------RGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEE------------------EEETTEEEEEES
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eeeCeEEEEEEE
Confidence 5554432 34444445555554443 2444443 677899999984
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-11 Score=122.38 Aligned_cols=213 Identities=12% Similarity=0.063 Sum_probs=144.4
Q ss_pred CCccCCCCc---hhHHHHHHHHHhhhCC-C--cEEEeC-CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC
Q 012321 201 SFEYGRYGN---PTTVVVEEKMSALEGA-E--STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 201 ~~~Y~R~~~---p~~~~Lee~lA~l~g~-e--~~v~~~-SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.+..+.... ...+.+++.|+++++. + ++++++ ||+.|+.+++..++.+||++++....+.+.+ +...++++
T Consensus 25 ~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~~ 102 (349)
T TIGR01364 25 VMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKKY 102 (349)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHh
Confidence 344444444 5677889999999985 2 366664 4889999999999999999888766665544 23566777
Q ss_pred CcEEEEeC---------CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cch
Q 012321 274 GITATVID---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKA 343 (466)
Q Consensus 274 gi~v~~vd---------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~p 343 (466)
|+ +..+. ..|+++++ +++ ++++|.+.+-.+.||...+ ++++.++++++||.+.+.+.. .+.
T Consensus 103 g~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~ 173 (349)
T TIGR01364 103 GV-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDV 173 (349)
T ss_pred CC-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCH
Confidence 77 44332 23455544 334 4899999888899999876 667778999999999765432 333
Q ss_pred hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-------HHHh--C---CCchHHHHHHHHHhhHH------
Q 012321 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVL--G---GALNPNAAYLIIRGMKT------ 405 (466)
Q Consensus 344 l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~~~--G---~~ls~~~A~l~lrgL~t------ 405 (466)
.+ .|+++.|.+|+|+++| .|+++.++++++++... .... + ++.+-...+.+...|+.
T Consensus 174 ~~--~d~~~~ssqK~lgP~G---lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG 248 (349)
T TIGR01364 174 SK--FGLIYAGAQKNIGPAG---LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGG 248 (349)
T ss_pred HH--ccEEEEecccccCCCc---eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Confidence 33 4599999999998665 68888998887765321 1101 1 12222222322223322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 406 LHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 406 l~~R~e~~~~na~~La~~L~~~p~ 429 (466)
++.+.+++.+.++++.++|++.|+
T Consensus 249 ~e~i~~r~~~l~~~l~~~l~~~~g 272 (349)
T TIGR01364 249 VKAIEKRNQAKAQLLYDTIDNSNG 272 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 556677788889999999999875
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=121.09 Aligned_cols=229 Identities=14% Similarity=0.144 Sum_probs=143.3
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-----CCCEEEEcCCCccchH-HHHHhh----c-ccC
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-----AGGHIVTTTDCYRKTR-IFIETV----L-PKM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~-----pGD~VLv~~~~y~~t~-~~~~~~----l-~~~ 273 (466)
..+|...+|.++|+++... +.+++++||++|+..++..... ...+||.....|++.. ..+... . +.+
T Consensus 114 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~ 193 (442)
T TIGR03372 114 LLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPF 193 (442)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence 3578888999999988754 4577789999999998874321 2357888888887743 222110 0 111
Q ss_pred ---CcEEEEeCCCCHHHHHHhcc-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----
Q 012321 274 ---GITATVIDPADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT---- 337 (466)
Q Consensus 274 ---gi~v~~vd~~D~e~Le~ai~-----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~---- 337 (466)
.-.+..++..|.+++++.++ ..++.+|++|......|.+.+ +++|.++|+++|+++|+||++..
T Consensus 194 ~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt 273 (442)
T TIGR03372 194 MPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT 273 (442)
T ss_pred CCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc
Confidence 11234566667888777764 134899999998877788877 89999999999999999999732
Q ss_pred CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHH--HHH
Q 012321 338 PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHL--RVQ 411 (466)
Q Consensus 338 ~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l--s~~~A~l~lrgL~tl~~--R~e 411 (466)
+.+ ..-...-.||++ ++|.+++.- ...|.+++++++.+.+.......+.+. +|..+..++..|+.+.. .++
T Consensus 274 G~~~a~e~~gv~PDivt--~gK~lg~G~-~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~ 350 (442)
T TIGR03372 274 GKMFACEHEGVQPDILC--LAKALGGGV-MPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPA 350 (442)
T ss_pred ccchhhhhcCCCCCeee--ehhhhcCCc-ccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 111 111222368776 899998631 124666778888877632111223333 56666665555555532 133
Q ss_pred HHHHHHHHHHHHHH----cCC-CcEEEeCCCC
Q 012321 412 QQNSTALRMAKILE----AHP-KVKRVHYPGL 438 (466)
Q Consensus 412 ~~~~na~~La~~L~----~~p-~V~~V~~PgL 438 (466)
+..+..+++.+.|+ ++| .|..|+-.|+
T Consensus 351 ~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl 382 (442)
T TIGR03372 351 QAAIKGDFLLDGFQQLAAEYPDLIIEARGKGL 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEecceE
Confidence 33444444544444 356 5666655543
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-11 Score=121.54 Aligned_cols=194 Identities=17% Similarity=0.089 Sum_probs=130.5
Q ss_pred CCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc-cCC-CEEEEcCCCccchHHHHHhh---------cccC
Q 012321 205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRKTRIFIETV---------LPKM 273 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all-~pG-D~VLv~~~~y~~t~~~~~~~---------l~~~ 273 (466)
..+.++...+|+++|+++.+.+.+++++||++|+..++.... .+| ++||..+..|++.....-.. ....
T Consensus 61 ~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~ 140 (364)
T PRK04013 61 PMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPL 140 (364)
T ss_pred CCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCC
Confidence 346788899999999999887889999999999999987553 345 89999998888743221110 1111
Q ss_pred CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEeCCCCC---CCc--cchh
Q 012321 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFAT---PLN--QKAL 344 (466)
Q Consensus 274 gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~-d---l~~I~ela~~~gillIvD~t~a~---~~~--~~pl 344 (466)
-..+..++..|++.+++.+.+ ++++|++|......|... | +++|.++|+++|+++|.||++.. +.+ ....
T Consensus 141 ~~~~~~~~~~d~~~l~~~i~~-~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~ 219 (364)
T PRK04013 141 VPGFKHIPFNDVEAAKEAITK-ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHY 219 (364)
T ss_pred CCCcEEecCCCHHHHHHHhcC-CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhc
Confidence 123445566688999999976 499999988776555543 5 89999999999999999999652 211 1222
Q ss_pred ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH
Q 012321 345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407 (466)
Q Consensus 345 ~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~ 407 (466)
....|+++ +.|.+++. ...|.++.++++. . .........+|..+..++..|+.+.
T Consensus 220 gv~PDiv~--~gK~lggG--~P~~a~~~~~~~~-~---~~~~~T~~gnp~~~aaa~a~l~~i~ 274 (364)
T PRK04013 220 KVEPDIVT--MGKGIGNG--VPVSLTLTNFDVE-R---GKHGSTFGGNPLACKAVAVTLRILR 274 (364)
T ss_pred CCCCCEEE--ecccccCC--ceeEEEEeccccc-C---CCcCCCCCcCHHHHHHHHHHHHHHH
Confidence 33467776 58999874 3456666665541 1 1111112245666666665566554
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-10 Score=119.41 Aligned_cols=226 Identities=15% Similarity=0.171 Sum_probs=137.7
Q ss_pred CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhh-cc-----cCC--
Q 012321 208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-LP-----KMG-- 274 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~-l~-----~~g-- 274 (466)
.++...+|.++|.++.+. +.+.+++||++|+..++.... ....+|+.....|++.. ..+... .. .++
T Consensus 82 ~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~ 161 (443)
T PRK08360 82 FPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGEL 161 (443)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCC
Confidence 467778898999988754 567788999999998887532 23457777777776632 222110 00 011
Q ss_pred cEEEEeCC-----------------CCHHHHHHhcc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEE
Q 012321 275 ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIV 329 (466)
Q Consensus 275 i~v~~vd~-----------------~D~e~Le~ai~----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gill 329 (466)
-.+.+++. .+++.+++.+. ..++++|++|...|++|.+.+ +++|.++|++||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~ll 241 (443)
T PRK08360 162 SDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILL 241 (443)
T ss_pred CCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 01222211 12344555553 235999999977799998765 889999999999999
Q ss_pred EEeCCCCCC-Cccc-----hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh
Q 012321 330 CIDGTFATP-LNQK-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM 403 (466)
Q Consensus 330 IvD~t~a~~-~~~~-----pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL 403 (466)
|+||++... .... ......|++ +++|.+++ | ...|++++++++++.+...........++..+..++..+
T Consensus 242 I~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l 317 (443)
T PRK08360 242 VVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLGG-G-LPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVI 317 (443)
T ss_pred EEeccccCCCcCccchhhhhcCCCCCEE--EecccccC-C-ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHH
Confidence 999997632 1111 112235665 57999995 3 467889999999888764322222334555555555555
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHH----cCCCcEEEeCCC
Q 012321 404 KTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPG 437 (466)
Q Consensus 404 ~tl~~--R~e~~~~na~~La~~L~----~~p~V~~V~~Pg 437 (466)
+.+.. .+++..+..+++.+.|+ ++|.+..|.--|
T Consensus 318 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~G 357 (443)
T PRK08360 318 EEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIG 357 (443)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccc
Confidence 54422 33444444455544443 356565554443
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-10 Score=119.57 Aligned_cols=226 Identities=14% Similarity=0.170 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhccc---
Q 012321 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPK--- 272 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~~--- 272 (466)
.+.++...+|.++|+++.. .+.+.+++||++|+..++..... + ..+||.....|++.......+...
T Consensus 81 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~ 160 (423)
T PRK05964 81 GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGM 160 (423)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccc
Confidence 4567888899999999874 46788899999999998875421 2 357888888888743221111100
Q ss_pred ------CCcEEEEeC--CCC-----HHHHHHhccC--CCceEEEEeC-CCCCCccccc----HHHHHHHHHhcCCEEEEe
Q 012321 273 ------MGITATVID--PAD-----MEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIVCID 332 (466)
Q Consensus 273 ------~gi~v~~vd--~~D-----~e~Le~ai~~--~~tklV~les-PsNPtG~v~d----l~~I~ela~~~gillIvD 332 (466)
....+..++ ..| ++++++.+.+ .++.+|++|. ..+..|...+ +++|.++|++||+++|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D 240 (423)
T PRK05964 161 HALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD 240 (423)
T ss_pred cccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 001122232 234 7788888842 2478999987 5666676653 899999999999999999
Q ss_pred CCCCCC-C---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH---HH-HhCC--CchHHHHHHHH
Q 012321 333 GTFATP-L---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---HH-VLGG--ALNPNAAYLII 400 (466)
Q Consensus 333 ~t~a~~-~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~---~~-~~G~--~ls~~~A~l~l 400 (466)
|++... - . ........|++ +++|.++|+. ...|++++++++++.+... .. ..+. ..++..+..++
T Consensus 241 Ev~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~ 317 (423)
T PRK05964 241 EIATGFGRTGTLFACEQAGVSPDIM--CLSKGLTGGY-LPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAAN 317 (423)
T ss_pred chhhCCCcCcchhHHHhcCCCCCee--eeehhhhcCc-ccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHH
Confidence 997421 1 1 11122335665 5679997653 2357788999998877531 11 1222 24566555555
Q ss_pred HhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCcEEEe
Q 012321 401 RGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRVH 434 (466)
Q Consensus 401 rgL~tl~--~R~e~~~~na~~La~~L~~---~p~V~~V~ 434 (466)
..++.+. ..+++..+..+++.+.|++ +|.+..|.
T Consensus 318 a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vr 356 (423)
T PRK05964 318 ASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVR 356 (423)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhccCCCeEEee
Confidence 5555432 2455666666677666654 34444443
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=122.19 Aligned_cols=230 Identities=16% Similarity=0.132 Sum_probs=138.6
Q ss_pred CCCchhHHHHHHHHHhhh-CC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhhc-----cc-CC
Q 012321 206 RYGNPTTVVVEEKMSALE-GA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETVL-----PK-MG 274 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~-g~-e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~l-----~~-~g 274 (466)
.+.++...+|.++|+++. +. +..++.+||++|+..++.... ....+|+..+..|++.. ..+.... .. ++
T Consensus 82 ~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~ 161 (433)
T PRK08117 82 VIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQ 161 (433)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCC
Confidence 456788899999999998 33 455566899999999887532 22367888777777632 2221100 00 00
Q ss_pred ---cEEEEeCC-----------------CCHHHHHHhcc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012321 275 ---ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG 326 (466)
Q Consensus 275 ---i~v~~vd~-----------------~D~e~Le~ai~----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~g 326 (466)
-.+..++. .+++++++.++ ..++.+|++|......|.+.+ +++|.++|++||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g 241 (433)
T PRK08117 162 PLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHG 241 (433)
T ss_pred CCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcC
Confidence 01112211 14455666553 235889999998888888887 999999999999
Q ss_pred CEEEEeCCCCCCCc-cch---hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012321 327 AIVCIDGTFATPLN-QKA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG 402 (466)
Q Consensus 327 illIvD~t~a~~~~-~~p---l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg 402 (466)
+++|+||++...-. ... ...|.+.-+.+++|.+++ | ...|++++++++++.+...........+|..+..++..
T Consensus 242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~-G-~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~ 319 (433)
T PRK08117 242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIAS-G-LPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALAT 319 (433)
T ss_pred CEEEEecchhccCccccchhHhhcCCCCCEeehhhhccC-C-CcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence 99999999763101 111 122432234689999985 3 45788889998887764322111123456666555555
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHHHc----CCCcEEEeCCC
Q 012321 403 MKTLH--LRVQQQNSTALRMAKILEA----HPKVKRVHYPG 437 (466)
Q Consensus 403 L~tl~--~R~e~~~~na~~La~~L~~----~p~V~~V~~Pg 437 (466)
|+.+. ..+++..+..+++.+.|++ +|.+..|.-.|
T Consensus 320 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G 360 (433)
T PRK08117 320 LEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIG 360 (433)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 55442 2334444445555554443 45444444333
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-11 Score=135.20 Aligned_cols=159 Identities=22% Similarity=0.302 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~al-l~p--GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
...+++.++++.|.+ ++-++.+++++..++++++ ..+ +|+|++++.+|+.+...+...++..|++++.++..+
T Consensus 123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~-- 200 (954)
T PRK05367 123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK-- 200 (954)
T ss_pred HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--
Confidence 455688899999985 5677888888888777776 344 489999999999988888777788999999887543
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-CCCCccchhccCCcEEEeccccc-----cc
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKF-----IG 360 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-a~~~~~~pl~~gaDivv~S~sK~-----lg 360 (466)
++. .+ ++..+++..|+ .+|.+.|+++|+++||++|+++++|... +......|-++|+||++.+.+|| +|
T Consensus 201 d~~---~~-~~~~vlvq~p~-~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~G 275 (954)
T PRK05367 201 ALD---HD-DVFGVLLQYPG-TSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFG 275 (954)
T ss_pred CCC---cc-cEEEEEEecCC-CCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCC
Confidence 111 22 37778787764 7999999999999999999999999865 44455678899999999999999 77
Q ss_pred cccCceEEEEEeChHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQI 380 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l 380 (466)
||+ +|++..++++.+++
T Consensus 276 GP~---aGflavr~~~~r~l 292 (954)
T PRK05367 276 GPH---AAYFAVRDAYKRSM 292 (954)
T ss_pred CCC---EEEEEECHHHHhhC
Confidence 875 79999888776655
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-10 Score=119.11 Aligned_cols=228 Identities=15% Similarity=0.160 Sum_probs=139.4
Q ss_pred CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhhc------ccCC
Q 012321 207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETVL------PKMG 274 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~l------~~~g 274 (466)
+.++...+|.++|+++... +.+.+++||++|+..++.... ....+||..+..|++.. ..+...- ..++
T Consensus 82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~ 161 (445)
T PRK08593 82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG 161 (445)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence 4678889999999998743 456677999999999887432 22356888888777743 2221100 0010
Q ss_pred ---cEEEEeCCC----------C-------HHHHHHhcc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012321 275 ---ITATVIDPA----------D-------MEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG 326 (466)
Q Consensus 275 ---i~v~~vd~~----------D-------~e~Le~ai~----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~g 326 (466)
..+..++.. + ++++++.+. ..++.+|++|...+..|.+.+ +++|.++|++||
T Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g 241 (445)
T PRK08593 162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG 241 (445)
T ss_pred CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 112222211 1 134444442 235899999999887787765 899999999999
Q ss_pred CEEEEeCCCCCC-Cc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH
Q 012321 327 AIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII 400 (466)
Q Consensus 327 illIvD~t~a~~-~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l 400 (466)
+++|+||++... -. ........|++ +++|.+++. ..+|++++++++++.+......+....+|..+..++
T Consensus 242 ~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~G--~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~ 317 (445)
T PRK08593 242 ILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAGG--MPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAAL 317 (445)
T ss_pred CEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccCC--cccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHH
Confidence 999999997421 11 11112235766 579999864 357889999999887753222223334566655555
Q ss_pred HhhHHHH--HHHHHHHHHHHHHHHHHH----cCCCcEEEeCCCC
Q 012321 401 RGMKTLH--LRVQQQNSTALRMAKILE----AHPKVKRVHYPGL 438 (466)
Q Consensus 401 rgL~tl~--~R~e~~~~na~~La~~L~----~~p~V~~V~~PgL 438 (466)
..++.+. ..+++..+..++|.+.|+ ++|.|..|+..|+
T Consensus 318 a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl 361 (445)
T PRK08593 318 ATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGL 361 (445)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccce
Confidence 5555443 234445555555555554 4676666655543
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-10 Score=118.22 Aligned_cols=226 Identities=14% Similarity=0.146 Sum_probs=140.4
Q ss_pred cCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcc---cC--
Q 012321 204 YGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---KM-- 273 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~---~~-- 273 (466)
+..+.++...+|.++|+++.. .+.+.+++||++|+..++.... ....+|+.....|++.......+-. .+
T Consensus 77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 77 YQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred ccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 334567778889999998864 3678889999999998887432 2345788888888774322211100 00
Q ss_pred C-----cEEEEeCC----------CCHHHHHHhcc----CCCceEEEEeCCCCCCccc-cc---HHHHHHHHHhcCCEEE
Q 012321 274 G-----ITATVIDP----------ADMEGLEAALN----NNNVSLFFTESPTNPFLRC-VD---VKLVSDLCHKKGAIVC 330 (466)
Q Consensus 274 g-----i~v~~vd~----------~D~e~Le~ai~----~~~tklV~lesPsNPtG~v-~d---l~~I~ela~~~gillI 330 (466)
+ -.+..++. .+++.+++.++ ..++.+|++|...+..|.. .+ +++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK06777 157 GFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLI 236 (421)
T ss_pred CCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 0 01111111 12556777664 2348899999888877753 44 8999999999999999
Q ss_pred EeCCCCCC-Cccc-----hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012321 331 IDGTFATP-LNQK-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK 404 (466)
Q Consensus 331 vD~t~a~~-~~~~-----pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~ 404 (466)
+||++... .... ....-.|++ +++|.+++ | ...|++++++++++.+...........++..+..++..|+
T Consensus 237 ~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~ 312 (421)
T PRK06777 237 ADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLGG-G-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLD 312 (421)
T ss_pred EechhhCCccCCchhhhhhcCCCCCEE--eeehhhcC-C-CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 99997632 1111 112235765 68999984 4 4678899999988876543222222345665555555555
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHc----CCCcEEE
Q 012321 405 TLH--LRVQQQNSTALRMAKILEA----HPKVKRV 433 (466)
Q Consensus 405 tl~--~R~e~~~~na~~La~~L~~----~p~V~~V 433 (466)
.+. ..+++..+..+++.+.|++ +|.+..|
T Consensus 313 ~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 347 (421)
T PRK06777 313 VIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDI 347 (421)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 432 3445555666666666654 4555444
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-10 Score=118.98 Aligned_cols=227 Identities=18% Similarity=0.212 Sum_probs=136.6
Q ss_pred CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc-------cCCCE-EEEcCCCccch-HHHHHhh-c---cc
Q 012321 208 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV-------PAGGH-IVTTTDCYRKT-RIFIETV-L---PK 272 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all-------~pGD~-VLv~~~~y~~t-~~~~~~~-l---~~ 272 (466)
.++...+|+++|+++.+ .+.+++++||++|+..++.... ++++. |+.....|++. ...+... . ..
T Consensus 96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~ 175 (460)
T PRK12403 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE 175 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence 46778899999999886 3678899999999999887653 22334 44555566653 2222110 0 00
Q ss_pred CC---cEEEEeCCC-----------------CHHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012321 273 MG---ITATVIDPA-----------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK 325 (466)
Q Consensus 273 ~g---i~v~~vd~~-----------------D~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~ 325 (466)
.+ -.+..++.. +.+++++.+. ..++.+|++|......|.+.+ +++|.++|++|
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~ 255 (460)
T PRK12403 176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY 255 (460)
T ss_pred cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 00 012222210 1245655552 134789999988777788776 99999999999
Q ss_pred CCEEEEeCCCCCC------CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCC--CchHHH
Q 012321 326 GAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGG--ALNPNA 395 (466)
Q Consensus 326 gillIvD~t~a~~------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~--~ls~~~ 395 (466)
|+++|+||++... +...-...-.||++ +.|.+++.- +..|.+++++++++.+..... ..+. ..+|..
T Consensus 256 g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~-~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~ 332 (460)
T PRK12403 256 DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGY-VPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVA 332 (460)
T ss_pred CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccccc-cceEEEEECHHHHHHHhcCCCccccCCCCCCCHHH
Confidence 9999999997421 11122223358886 899998752 124556678888877642111 1222 256777
Q ss_pred HHHHHHhhHHHHH--HHHHHH-HHHHHHHHHHH----cCCCcEEEeCCC
Q 012321 396 AYLIIRGMKTLHL--RVQQQN-STALRMAKILE----AHPKVKRVHYPG 437 (466)
Q Consensus 396 A~l~lrgL~tl~~--R~e~~~-~na~~La~~L~----~~p~V~~V~~Pg 437 (466)
+..++..|+.+.. .+++.. ++.++|.+.|+ ++|.|..|.--|
T Consensus 333 ~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 381 (460)
T PRK12403 333 AAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAG 381 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecc
Confidence 6666666665542 234443 45555555544 466666665444
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=121.36 Aligned_cols=261 Identities=18% Similarity=0.158 Sum_probs=163.1
Q ss_pred cccCCCc-cCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-CCCEEEEc
Q 012321 178 VNTSAYF-FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTT 255 (466)
Q Consensus 178 ~~sst~~-~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~-pGD~VLv~ 255 (466)
.+|+|.+ -++.+++..+.. ++-.|+ ++|+..+||+.+++++|.+.++.+.+|..+...++..+++ +||++++.
T Consensus 46 LrSDTgT~apS~~m~aAM~~---GDD~Y~--gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~ 120 (467)
T TIGR02617 46 LLTDSGTGAVTQSMQAAMMR---GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD 120 (467)
T ss_pred CccCCCCCCCCHHHHHHHHc---CCcccc--cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhccccccccccc
Confidence 6788888 488888887775 334566 7899999999999999999999999999998888888888 78877754
Q ss_pred CC-------Cccc-hHHHHHhhcccCCcEEEEe--------------C-CCCHHHHHHhccC---CCceEEEEeCCCCCC
Q 012321 256 TD-------CYRK-TRIFIETVLPKMGITATVI--------------D-PADMEGLEAALNN---NNVSLFFTESPTNPF 309 (466)
Q Consensus 256 ~~-------~y~~-t~~~~~~~l~~~gi~v~~v--------------d-~~D~e~Le~ai~~---~~tklV~lesPsNPt 309 (466)
.. .|.. +... ....|+....+ + ..|+++|+++|++ .+...+.++-.+|..
T Consensus 121 ~~~~~v~hn~~fett~g~----a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~ 196 (467)
T TIGR02617 121 RSKMVAFSNYFFDTTQGH----SQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSA 196 (467)
T ss_pred ccccccceEEEEecchHH----HHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecC
Confidence 43 1222 1111 11223332221 1 2489999999974 224444444444543
Q ss_pred -ccccc---HHHHHHHHHhcCCEEEEeCC--C--CC-------CCccch---h----ccCCcEEEeccccccccccCceE
Q 012321 310 -LRCVD---VKLVSDLCHKKGAIVCIDGT--F--AT-------PLNQKA---L----SLGADLVLHSATKFIGGHNDVLA 367 (466)
Q Consensus 310 -G~v~d---l~~I~ela~~~gillIvD~t--~--a~-------~~~~~p---l----~~gaDivv~S~sK~lgG~gdv~g 367 (466)
|.+.+ ++++.++|++||+.+++|.+ + +. .+...+ + ...+|.+..|++|-++.+ +|
T Consensus 197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vG 273 (467)
T TIGR02617 197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MG 273 (467)
T ss_pred CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---cc
Confidence 66665 67899999999999999987 1 11 111111 1 146899999999999988 58
Q ss_pred EEEEeChH----HHHHHHHHHH------HhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC--CCcE--
Q 012321 368 GSISGSGK----LVTQIRNLHH------VLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH--PKVK-- 431 (466)
Q Consensus 368 G~vvg~~e----li~~l~~~~~------~~G~~ls~~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~~--p~V~-- 431 (466)
|+++++++ +.++++.... .+| .++.-+...+..||+.. ...++...+..++|.+.|.+. |-+.
T Consensus 274 g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYG-Glagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~Gvpi~~~G 352 (467)
T TIGR02617 274 GLLCFKDDSFFDVYTECRTLCVVQEGFPTYG-GLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEIGVVCQQAG 352 (467)
T ss_pred ceEEecchhHHHHHHHHHhhcccccCCcCcC-chhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhCCCcEEecC
Confidence 99998764 3344443221 122 33333322223344431 223444445567788888775 3221
Q ss_pred --EEe------CCCCC--CCcchHHHHhhc
Q 012321 432 --RVH------YPGLK--SHPEHHIATQQM 451 (466)
Q Consensus 432 --~V~------~PgL~--s~p~~~l~~~~~ 451 (466)
.|+ .|.++ ..|.+.++...+
T Consensus 353 ghav~iDa~~~lphip~~~fpa~al~~~ly 382 (467)
T TIGR02617 353 GHAAFVDAGKLLPHIPADQFPAHALACELY 382 (467)
T ss_pred ccEEEEehhhhCCCCChhhCcHHHHHHHHH
Confidence 121 24444 467777776655
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-10 Score=118.56 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=116.8
Q ss_pred cCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhhc----ccC
Q 012321 204 YGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETVL----PKM 273 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~l----~~~ 273 (466)
+....++...+|.++|.++.. .+..++++||++|+..++.... ....+|+.....|++.. ..+...- ...
T Consensus 77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 156 (421)
T PRK09792 77 YQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI 156 (421)
T ss_pred cCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence 334567888899999998764 2578889999999998887543 23357888888887742 2221100 000
Q ss_pred Cc-----EEEEeCC----------CCHHHHHHhcc----CCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEE
Q 012321 274 GI-----TATVIDP----------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVC 330 (466)
Q Consensus 274 gi-----~v~~vd~----------~D~e~Le~ai~----~~~tklV~lesPsNPtG~v~-d---l~~I~ela~~~gillI 330 (466)
+. .+..++. .+++.+++.++ ..++++|++|...+++|... + +++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK09792 157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI 236 (421)
T ss_pred CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 10 1222221 13477787775 23589999999999999765 5 8899999999999999
Q ss_pred EeCCCCCC-Ccc-----chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH
Q 012321 331 IDGTFATP-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN 382 (466)
Q Consensus 331 vD~t~a~~-~~~-----~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~ 382 (466)
+||++... ... ..+....|+ .+++|.+++. ...|++++++++++.+..
T Consensus 237 ~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~G--~pigav~~~~~i~~~~~~ 290 (421)
T PRK09792 237 ADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLAGG--MPLSGVVGNANIMDAPAP 290 (421)
T ss_pred EeccccCCCCCCchhHHHhcCCCCcE--EEeehhhcCC--CceEEEEEcHHHHhccCC
Confidence 99996532 111 111123564 5789999864 457889999998877653
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=124.00 Aligned_cols=211 Identities=20% Similarity=0.243 Sum_probs=165.6
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
....+++|+.+|++.|.+++++|+-|-+.+...+-+++.||.-|+.....|.+.. .-++.-|..++....+|.++|
T Consensus 181 ~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~L 256 (519)
T KOG1357|consen 181 TEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGL 256 (519)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHH
Confidence 4568899999999999999999999998888899999999999998887777633 334556788888888888888
Q ss_pred HHhccCC------------CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----------chhcc
Q 012321 289 EAALNNN------------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----------KALSL 346 (466)
Q Consensus 289 e~ai~~~------------~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~----------~pl~~ 346 (466)
|+.+++. +--+|++|.....-|.+.++.++.+++|++.++|+.||++..+... .+...
T Consensus 257 Er~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~ 336 (519)
T KOG1357|consen 257 ERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPE 336 (519)
T ss_pred HHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCch
Confidence 8877421 1237777888888999999999999999999999999997654331 12233
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---------HHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---------HLRVQQQNS 415 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---------~~R~e~~~~ 415 (466)
.+||.+..++|++++. ||++.+++++++.++.... ..+..++|-.+...+.+++.+ ..++++..+
T Consensus 337 dvDImMGtftKSfga~----GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ 412 (519)
T KOG1357|consen 337 DVDIMMGTFTKSFGAA----GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAE 412 (519)
T ss_pred hheeecceehhhcccc----cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHh
Confidence 4789999999999976 5999999999998875332 345566776666666666654 467788888
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
|...+...|+..
T Consensus 413 ns~yfr~~l~~~ 424 (519)
T KOG1357|consen 413 NSRYFRWELQKM 424 (519)
T ss_pred hhHHHHHhhhcC
Confidence 998888888764
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-10 Score=119.23 Aligned_cols=228 Identities=14% Similarity=0.166 Sum_probs=142.9
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--c--CC-CEEEEcCCCccchH-HHHHhhc-c------
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--P--AG-GHIVTTTDCYRKTR-IFIETVL-P------ 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~--pG-D~VLv~~~~y~~t~-~~~~~~l-~------ 271 (466)
+.+|...+|.++|+++... +.+.+++||++|+..++.... . .| .+||.....|++.. ..+...- .
T Consensus 121 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~ 200 (459)
T PRK11522 121 LLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPF 200 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence 3578888999999988643 567888999999999887442 1 22 36888888887743 2221100 0
Q ss_pred -cCCcEEEEeCCCCHHHHHHhccC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----
Q 012321 272 -KMGITATVIDPADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT---- 337 (466)
Q Consensus 272 -~~gi~v~~vd~~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~---- 337 (466)
...-.+..++..|.+++++.++. .++.+|++|......|.+.+ ++++.++|++||+++|+||++..
T Consensus 201 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRt 280 (459)
T PRK11522 201 MPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRT 280 (459)
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCcc
Confidence 00012334555678888887752 34789999998877788776 89999999999999999999742
Q ss_pred CC--ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHH--HHHH
Q 012321 338 PL--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLH--LRVQ 411 (466)
Q Consensus 338 ~~--~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l--s~~~A~l~lrgL~tl~--~R~e 411 (466)
+. .........||+ +++|.+++.- ...|.+++++++++.+.......+.+. +|..+..++..|+.+. ..++
T Consensus 281 G~~~a~e~~gv~PDiv--t~gK~lggG~-~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~ 357 (459)
T PRK11522 281 GKMFACEHENVQPDIL--CLAKALGGGV-MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPA 357 (459)
T ss_pred chhhhhhccCCCCCEE--EechhhhCCC-ccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence 11 111122235776 6799998741 124666677887776532111223333 6666655555555543 2345
Q ss_pred HHHHHHHHHHHHHHc----CC-CcEEEeCCC
Q 012321 412 QQNSTALRMAKILEA----HP-KVKRVHYPG 437 (466)
Q Consensus 412 ~~~~na~~La~~L~~----~p-~V~~V~~Pg 437 (466)
+..+..++|.+.|++ +| .|..|+..|
T Consensus 358 ~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~G 388 (459)
T PRK11522 358 QAEQKGDYLLDGFRQLAREYPDLVQEARGKG 388 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceeeEEece
Confidence 555556666665543 55 455665554
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-10 Score=119.18 Aligned_cols=229 Identities=15% Similarity=0.172 Sum_probs=137.3
Q ss_pred CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhh-cc--c--CC--
Q 012321 207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-LP--K--MG-- 274 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~-l~--~--~g-- 274 (466)
..++...+|.+++.++.+. +..++++||++|+..++.... ....+||...+.|++........ .. . .+
T Consensus 81 ~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~ 160 (425)
T PRK08088 81 LAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG 160 (425)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence 4467777899999987653 578899999998887776432 23456777788888754332221 10 0 01
Q ss_pred -----cEEEEeC--CC------CHHHHHHhcc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeC
Q 012321 275 -----ITATVID--PA------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG 333 (466)
Q Consensus 275 -----i~v~~vd--~~------D~e~Le~ai~----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~ 333 (466)
+....++ .. +++++++.++ .+++++|++|......|.+.. +++|.++|+++|+++|+||
T Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De 240 (425)
T PRK08088 161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE 240 (425)
T ss_pred CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111111 11 1456787775 235889999877654455443 8899999999999999999
Q ss_pred CCCCC-Cccch--h-ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--
Q 012321 334 TFATP-LNQKA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH-- 407 (466)
Q Consensus 334 t~a~~-~~~~p--l-~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~-- 407 (466)
++... ..... . ..+.+.-+.|++|.+++ | .+.|++++++++++.+...........++..+..++..++.+.
T Consensus 241 v~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G-~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~ 318 (425)
T PRK08088 241 VQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG-G-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE 318 (425)
T ss_pred cccCCCcCcchhHHhhcCCCCCEEEEeccccC-C-CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 97642 11111 1 23444446889999984 4 4689999999999887654433333345665555554444331
Q ss_pred HHHHHHHHHH----HHHHHHHHcCCCcEEEeCCC
Q 012321 408 LRVQQQNSTA----LRMAKILEAHPKVKRVHYPG 437 (466)
Q Consensus 408 ~R~e~~~~na----~~La~~L~~~p~V~~V~~Pg 437 (466)
..+++..+.. ..+.+.+.++|.+..|..+|
T Consensus 319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G 352 (425)
T PRK08088 319 NLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLG 352 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 1122222222 23333344567665555543
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=120.51 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHhhhCC-C--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGA-E--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~-e--~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
...+.+++.++++++. + +++++ +||+.|+.+++..++.+||++++......+.+ +...++++|.. ..+..
T Consensus 48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~~g~~-~~~~~~~~ 124 (360)
T PRK05355 48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKKYGEV-NVAASSED 124 (360)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCc-eEEecccc
Confidence 6678889999999995 2 34444 67779999999999999999887765555533 23556666754 33321
Q ss_pred ---CCHHHHHH-hccCCCceEEEEeCCCCCCcccc-cHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccc
Q 012321 283 ---ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCV-DVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (466)
Q Consensus 283 ---~D~e~Le~-ai~~~~tklV~lesPsNPtG~v~-dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~s 356 (466)
.+..++++ .+++ ++++|.+.+-.+.||.+. |+++| +|++++||.+.+.+.. .+..+ .|+++.|.+
T Consensus 125 ~g~~~~~~~~~~~l~~-~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~--~d~~~~ssq 195 (360)
T PRK05355 125 DGFTYIPPLDEWQLSD-DAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSK--FGLIYAGAQ 195 (360)
T ss_pred cCCCCCCChhhccCCC-CCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHH--ccEEEEecc
Confidence 12334444 6766 489999988889999998 77766 8999999999765532 23333 369999999
Q ss_pred cccccccCceEEEEEeChHHHHHHHHH-H---------H--HhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGSGKLVTQIRNL-H---------H--VLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTAL 418 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~~eli~~l~~~-~---------~--~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na~ 418 (466)
|+++.+| .|+++.++++++++... . . ...++.+-...+.+...|+ .++.+.+++.+.++
T Consensus 196 K~lgP~G---lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~ 272 (360)
T PRK05355 196 KNIGPAG---LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA 272 (360)
T ss_pred ccccCCc---eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9998665 68888998887665431 1 0 0112222222332222332 25566778888999
Q ss_pred HHHHHHHcCC
Q 012321 419 RMAKILEAHP 428 (466)
Q Consensus 419 ~La~~L~~~p 428 (466)
.+.++|++.+
T Consensus 273 ~l~~~l~~~~ 282 (360)
T PRK05355 273 LLYDAIDSSD 282 (360)
T ss_pred HHHHHHHhCC
Confidence 9999999877
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=119.69 Aligned_cols=169 Identities=25% Similarity=0.374 Sum_probs=123.9
Q ss_pred HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCC-c-cchHHHHHhhcccCCcEEEEeCC---CCHHHH
Q 012321 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC-Y-RKTRIFIETVLPKMGITATVIDP---ADMEGL 288 (466)
Q Consensus 214 ~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~-y-~~t~~~~~~~l~~~gi~v~~vd~---~D~e~L 288 (466)
.+.+.++.+.|+++++++++-++|+.+++.++.. +.+|++..-. - ++.. -+...++..|.++..+.. ....++
T Consensus 72 ~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~-~v~d~~~~aG~~l~EvG~tn~t~~~d~ 149 (395)
T COG1921 72 ELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAF-RVPDIIRLAGAKLVEVGTTNRTHLKDY 149 (395)
T ss_pred HHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCC-ChhHHHHHcCCEEEEecccCcCCHHHH
Confidence 5666777777889999999999999998888776 5566654311 1 1111 133455666877777653 468899
Q ss_pred HHhccCCCceEEEEeCCCCC-CcccccHHHHHHHHHhcCCEEEEeCCCCC-----CCccchhccCCcEEEeccccccccc
Q 012321 289 EAALNNNNVSLFFTESPTNP-FLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQKALSLGADLVLHSATKFIGGH 362 (466)
Q Consensus 289 e~ai~~~~tklV~lesPsNP-tG~v~dl~~I~ela~~~gillIvD~t~a~-----~~~~~pl~~gaDivv~S~sK~lgG~ 362 (466)
+.+|.++ |++++=-.-+|. .-...+.++++++||++|+++++|.+-+. +-.+..+..|+|+|++|..|.|+|+
T Consensus 150 ~~AIne~-ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGP 228 (395)
T COG1921 150 ELAINEN-TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGP 228 (395)
T ss_pred HHHhccC-CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCC
Confidence 9999986 766654344442 22345788999999999999999998754 3335567889999999999999999
Q ss_pred cCceEEEEEeChHHHHHHHHHHHHhC
Q 012321 363 NDVLAGSISGSGKLVTQIRNLHHVLG 388 (466)
Q Consensus 363 gdv~gG~vvg~~eli~~l~~~~~~~G 388 (466)
. +|+++|+++++++++......+
T Consensus 229 q---aGii~GkKelI~~lq~~~l~Ra 251 (395)
T COG1921 229 Q---AGIIVGKKELIEKLQSHPLKRA 251 (395)
T ss_pred c---cceEechHHHHHHHHhhhhhhh
Confidence 5 9999999999999876544444
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-09 Score=113.85 Aligned_cols=224 Identities=20% Similarity=0.224 Sum_probs=144.9
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHH-HHHhhc-------c-cCCc
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETVL-------P-KMGI 275 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~-~~~~~l-------~-~~gi 275 (466)
..++...+|.++|.++.+.+.+.+++||++|+..+++... ...++|+.....|++... .+.... . ..|+
T Consensus 112 ~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~ 191 (453)
T PRK07046 112 LPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQ 191 (453)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCC
Confidence 3567788899999998887889999999999988887542 334678888888888531 111100 0 0121
Q ss_pred ------EEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCC----CCCcc
Q 012321 276 ------TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFA----TPLNQ 341 (466)
Q Consensus 276 ------~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a----~~~~~ 341 (466)
.+..++..|++++++.+...++.+|++|......|.+.+ +++|.++|+++|+++|+||++. .+-.+
T Consensus 192 ~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~ 271 (453)
T PRK07046 192 VHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT 271 (453)
T ss_pred CccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh
Confidence 233445568999999996546899999987766676654 7999999999999999999974 22112
Q ss_pred chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH------H-HhCC--CchHHHHHHHHHhhHHHHH--HH
Q 012321 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------H-VLGG--ALNPNAAYLIIRGMKTLHL--RV 410 (466)
Q Consensus 342 ~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~------~-~~G~--~ls~~~A~l~lrgL~tl~~--R~ 410 (466)
.....-.|+++ +.|.++|. ...|++++++++++.+.... . ..++ ..+|..+..++..|+.+.. ..
T Consensus 272 ~~~gv~PDi~t--~gK~lggG--~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~ 347 (453)
T PRK07046 272 RAHGLEPDFLV--VGKPIAGG--VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAY 347 (453)
T ss_pred HHhCCCcccee--ehhhhcCC--CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHH
Confidence 22233468876 79999975 35788889999988775311 0 1122 2355555555555544421 23
Q ss_pred HHHHHHHHHHHHHHH----cCCCcEEEe
Q 012321 411 QQQNSTALRMAKILE----AHPKVKRVH 434 (466)
Q Consensus 411 e~~~~na~~La~~L~----~~p~V~~V~ 434 (466)
++..+..++|.+.|+ +++.+..|.
T Consensus 348 ~~~~~~g~~l~~~L~~l~~~~~~~~~v~ 375 (453)
T PRK07046 348 AHMLALAARLAAGLRAVIARHGLPWHVT 375 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 444455555555554 455444443
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-09 Score=115.13 Aligned_cols=231 Identities=14% Similarity=0.161 Sum_probs=141.8
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc------c-C-CCEEEEcCCCccchHHHHHhh----
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV------P-A-GGHIVTTTDCYRKTRIFIETV---- 269 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all------~-p-GD~VLv~~~~y~~t~~~~~~~---- 269 (466)
++++.++...+|.++|+++... +.+.+.+||++|+.+++.... . + ..+||.....|++.......+
T Consensus 86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~ 165 (460)
T PRK06105 86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLP 165 (460)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCc
Confidence 3456678888999999998753 567888999999999887642 1 2 357888788877743111000
Q ss_pred --cccCCc---EEEEeCCC------------------CHHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHH
Q 012321 270 --LPKMGI---TATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVS 319 (466)
Q Consensus 270 --l~~~gi---~v~~vd~~------------------D~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ 319 (466)
.+.++. .+..++.. ..+++++.+. ..++.+|++|......|.+.+ +++|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr 245 (460)
T PRK06105 166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQ 245 (460)
T ss_pred ccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence 001111 11222211 1345666663 234899999988776777765 89999
Q ss_pred HHHHhcCCEEEEeCCCCC-CC---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-------HH
Q 012321 320 DLCHKKGAIVCIDGTFAT-PL---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HV 386 (466)
Q Consensus 320 ela~~~gillIvD~t~a~-~~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-------~~ 386 (466)
++|++||+++|+||++.. +- + ..-...-.||++ ++|.++|.. +..|++++++++++.+.... ..
T Consensus 246 ~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG~-~P~~av~~~~~i~~~~~~~~~~~~~~~h~ 322 (460)
T PRK06105 246 AVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSSY-QPLSAVLMNEKVYDPIADESGKIGTFGHG 322 (460)
T ss_pred HHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccCc-ccceEEEEcHHHHHHHhcccccCcccccC
Confidence 999999999999999632 11 1 122223357774 789998742 23688888998888765321 11
Q ss_pred hCCCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCcEEEeCCC
Q 012321 387 LGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYPG 437 (466)
Q Consensus 387 ~G~~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~---~~p~V~~V~~Pg 437 (466)
.....+|..+..++..|+.+.. .+++..+..++|.+.|+ ++|.|..|+--|
T Consensus 323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~G 378 (460)
T PRK06105 323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVG 378 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc
Confidence 1123466766666666665542 34555555555555554 355555554433
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=122.39 Aligned_cols=156 Identities=22% Similarity=0.309 Sum_probs=122.5
Q ss_pred hHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--------
Q 012321 211 TTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-------- 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-------- 281 (466)
...+.++..|+.+|++...++.+|+ .|+..++++++++||.||+++++|.+....+ -..|....++.
T Consensus 71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~gl----ilaGa~Pvyl~p~~np~~g 146 (557)
T COG1982 71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGL----ILAGATPVYLEPSRNPLYG 146 (557)
T ss_pred cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHH----HHcCCceEEecCCCCcccc
Confidence 4788899999999999999999998 8999999999999999999999999865443 22344433332
Q ss_pred ---CCCHHHHHHhccCCC-c-eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC------ccchhccCCcE
Q 012321 282 ---PADMEGLEAALNNNN-V-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLGADL 350 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~-t-klV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~------~~~pl~~gaDi 350 (466)
..+.+.+++++.+++ . |++++.+|+ ..|.+.|+++|.+.+++.++++.+|++..... .....+.++|+
T Consensus 147 i~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~ 225 (557)
T COG1982 147 IIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADF 225 (557)
T ss_pred ccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceE
Confidence 347888888775432 4 788886776 57999999999999999999999999954322 22334578999
Q ss_pred EEeccccccccccCceEEEEEeC
Q 012321 351 VLHSATKFIGGHNDVLAGSISGS 373 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~ 373 (466)
+++|.||.+++.+ .+.++..+
T Consensus 226 ~tqS~HK~l~alS--QaS~iHv~ 246 (557)
T COG1982 226 VTQSTHKLLAALS--QASMIHVK 246 (557)
T ss_pred EEechhhhhhhhh--hhHHHhhC
Confidence 9999999999876 45666554
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-09 Score=113.66 Aligned_cols=227 Identities=16% Similarity=0.153 Sum_probs=135.3
Q ss_pred CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcc-----cCCc-
Q 012321 207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP-----KMGI- 275 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~-----~~gi- 275 (466)
..++...+|.++|+++.+. +..++++||++|+..++... ....++||.....|++.......+-. ..+.
T Consensus 96 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~ 175 (443)
T PRK06058 96 TPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFG 175 (443)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccC
Confidence 4567788899999988752 46888999999999888732 13347899989888875422111100 0000
Q ss_pred ----EEEEeC---C-CC---------------HHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012321 276 ----TATVID---P-AD---------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI 328 (466)
Q Consensus 276 ----~v~~vd---~-~D---------------~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gil 328 (466)
.+..++ . .+ .+.+++.+..+++.+|++|....-.|.+.+ +++|.++|++||++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gil 255 (443)
T PRK06058 176 PFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVV 255 (443)
T ss_pred CCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 111111 0 01 233444444345889998765544455543 89999999999999
Q ss_pred EEEeCCCCCCC----c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012321 329 VCIDGTFATPL----N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG 402 (466)
Q Consensus 329 lIvD~t~a~~~----~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg 402 (466)
+|.||++...- . ......-.|+++. .|.+++. ...|++++++++++.+...........+|..+..++..
T Consensus 256 lI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK~l~~G--~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~ 331 (443)
T PRK06058 256 FIADEVQTGFARTGAWFACEHEGIVPDLITT--AKGIAGG--LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAA 331 (443)
T ss_pred EEEeccccCCCcChhhhHHHhcCCCCCEEEE--cccccCC--CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHH
Confidence 99999975321 1 1111223588765 6999853 45788889999887765332211123456666665555
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHc----CCCcEEEeCCC
Q 012321 403 MKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPG 437 (466)
Q Consensus 403 L~tl~~--R~e~~~~na~~La~~L~~----~p~V~~V~~Pg 437 (466)
|+.+.. ..++..+...+|.+.|++ +|.|..|.--|
T Consensus 332 L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G 372 (443)
T PRK06058 332 IETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRG 372 (443)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccc
Confidence 555432 234444445555555544 56555554433
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-10 Score=114.87 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=132.9
Q ss_pred CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----CCCHHHHHHhccCC-----
Q 012321 226 ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----PADMEGLEAALNNN----- 295 (466)
Q Consensus 226 e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----~~D~e~Le~ai~~~----- 295 (466)
+.-+++++|. .++..+++.+++.||+|++....|.+... .++..|+++..++ ..++|.|++.+...
T Consensus 124 ~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~----s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~ 199 (472)
T KOG0634|consen 124 NWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ----SMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSY 199 (472)
T ss_pred CceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH----hccccCceEEeccccCCCCCHHHHHHHHhcCCcccc
Confidence 3466777776 99999999999999999999999998663 3556788877775 34788888877532
Q ss_pred ---CceEEEEeCC--CCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCC----Cc--------------------cch
Q 012321 296 ---NVSLFFTESP--TNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATP----LN--------------------QKA 343 (466)
Q Consensus 296 ---~tklV~lesP--sNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~----~~--------------------~~p 343 (466)
+++++|. -| +||||..+.+ ++|.++|++|++++|.|+.|... +. ...
T Consensus 200 k~~~p~vlYT-IPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sf 278 (472)
T KOG0634|consen 200 KKPKPHVLYT-IPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSF 278 (472)
T ss_pred cCCCCeEEEe-CcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCc
Confidence 2556664 45 5999999875 58999999999999999986321 00 001
Q ss_pred hcc---CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCC---CchH------HHHHHHHHhhHHHHHHHH
Q 012321 344 LSL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG---ALNP------NAAYLIIRGMKTLHLRVQ 411 (466)
Q Consensus 344 l~~---gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~---~ls~------~~A~l~lrgL~tl~~R~e 411 (466)
+.+ |..|-..||||.++.+. +.||+.+++.+++++-........ +.++ +..|...--++++.....
T Consensus 279 lslDtdGrVIr~dSFSKiiaPGl--RlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~ 356 (472)
T KOG0634|consen 279 LSLDTDGRVIRNDSFSKIIAPGL--RLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRS 356 (472)
T ss_pred ccccccccEEeccchhhhhcCcc--eeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 33478899999998654 789999999888876554432221 1222 223333223455555555
Q ss_pred HHHHHHHHHHHHHHc
Q 012321 412 QQNSTALRMAKILEA 426 (466)
Q Consensus 412 ~~~~na~~La~~L~~ 426 (466)
.+..++..+...|.+
T Consensus 357 ~Yt~Rrn~~l~Al~k 371 (472)
T KOG0634|consen 357 SYTERRNALLSALDK 371 (472)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666665
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-09 Score=115.54 Aligned_cols=226 Identities=14% Similarity=0.160 Sum_probs=140.7
Q ss_pred CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhhc-----
Q 012321 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVL----- 270 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~--------pGD~VLv~~~~y~~t~~~~~~~l----- 270 (466)
.+.++...+|.++|.++.. .+.+.+++||++|+..++..... ...+||.....|++........-
T Consensus 91 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~ 170 (460)
T PRK06541 91 SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF 170 (460)
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhh
Confidence 3567888889999998864 36788889999999988874321 13678888888877432111110
Q ss_pred -ccCC---cEEEEeCC----------CC--------HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012321 271 -PKMG---ITATVIDP----------AD--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL 321 (466)
Q Consensus 271 -~~~g---i~v~~vd~----------~D--------~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~el 321 (466)
..++ ..+..++. .+ ++.+++.+. +.++.+|++|...++.|.+.+ +++|.++
T Consensus 171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~l 250 (460)
T PRK06541 171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREI 250 (460)
T ss_pred ccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHH
Confidence 0000 01111110 11 256777774 234789999888899999887 9999999
Q ss_pred HHhcCCEEEEeCCCCC-CCc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--Hh--CCCc
Q 012321 322 CHKKGAIVCIDGTFAT-PLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VL--GGAL 391 (466)
Q Consensus 322 a~~~gillIvD~t~a~-~~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~--G~~l 391 (466)
|+++|+++|+||++.. +-. ........|+++ ++|.+++. ....|++++++++++.+..... .. ....
T Consensus 251 c~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G-~~pigav~~~~~i~~~~~~~~~~~~~~~T~~g 327 (460)
T PRK06541 251 CDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSG-YSPLGAMIASDRLFEPFLDGPTMFLHGYTFGG 327 (460)
T ss_pred HHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCC-ccceeEEEEcHHHHHHhhcCCCccccCCCCCC
Confidence 9999999999999732 211 111222368775 89999853 2235777888888877653211 11 1224
Q ss_pred hHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCcEEEe
Q 012321 392 NPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRVH 434 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~---~p~V~~V~ 434 (466)
+|..+..++..++.+. ...++..+..++|.+.|++ +|.|..|.
T Consensus 328 np~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr 375 (460)
T PRK06541 328 HPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVR 375 (460)
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5666666665565543 2345566666777766655 34444443
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-09 Score=111.61 Aligned_cols=230 Identities=15% Similarity=0.131 Sum_probs=137.2
Q ss_pred cCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhhc----ccC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETVL----PKM 273 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~l----~~~ 273 (466)
+....++...+|.++|.++... +.+.+++||++|+..++.... ....+|+.....|++.. ..+...- ...
T Consensus 70 ~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 149 (420)
T TIGR00700 70 FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKS 149 (420)
T ss_pred ccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCccccc
Confidence 3345567788899999988642 578888999999998887432 23456888888887743 2221100 001
Q ss_pred Cc-----EEEEeCCC----------------CHHHHHHhcc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012321 274 GI-----TATVIDPA----------------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (466)
Q Consensus 274 gi-----~v~~vd~~----------------D~e~Le~ai~----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~ 324 (466)
+. .+..++.. +++.+++.+. .+++.+|++|....-+|.+.+ +++|.++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~ 229 (420)
T TIGR00700 150 GFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE 229 (420)
T ss_pred CCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence 11 11111110 1456666552 235899999988777787664 8999999999
Q ss_pred cCCEEEEeCCCCCCCc-c-----chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH
Q 012321 325 KGAIVCIDGTFATPLN-Q-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL 398 (466)
Q Consensus 325 ~gillIvD~t~a~~~~-~-----~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l 398 (466)
||+++|+||++..... . .......|+++ ++|.+++ | ...|++++++++++.+...........++..+..
T Consensus 230 ~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aa 305 (420)
T TIGR00700 230 HGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLAD-G-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAA 305 (420)
T ss_pred cCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccC-C-cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHH
Confidence 9999999999754211 1 11222357654 8999994 4 4678899999988877532221122335555555
Q ss_pred HHHhhHHH-----HHHHHHHHH-HHHHHHHHHHcCCCcEEEeCCC
Q 012321 399 IIRGMKTL-----HLRVQQQNS-TALRMAKILEAHPKVKRVHYPG 437 (466)
Q Consensus 399 ~lrgL~tl-----~~R~e~~~~-na~~La~~L~~~p~V~~V~~Pg 437 (466)
++..++.+ ..++++..+ ....|.+..+.+|.+..|...|
T Consensus 306 a~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G 350 (420)
T TIGR00700 306 ALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLG 350 (420)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccc
Confidence 54444332 222222222 2333333444567666665554
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-09 Score=112.27 Aligned_cols=227 Identities=13% Similarity=0.081 Sum_probs=132.5
Q ss_pred CCchhHHHHHHHHHhhhCC----CcEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcc------cC
Q 012321 207 YGNPTTVVVEEKMSALEGA----ESTVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP------KM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~----e~~v~~-~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~------~~ 273 (466)
+.++...+|.++|.++... ...+++ +||++|+..++.... ....+||.....|++.......+.. .+
T Consensus 79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~ 158 (442)
T TIGR00709 79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV 158 (442)
T ss_pred cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence 5678888999999998753 244555 799999999887432 2346788888888774322211111 00
Q ss_pred C---cEEEEeCCCC-------------H----HHHHHhcc-----CCCceEEEEeCCCCCCcccc-c---HHHHHHHHHh
Q 012321 274 G---ITATVIDPAD-------------M----EGLEAALN-----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHK 324 (466)
Q Consensus 274 g---i~v~~vd~~D-------------~----e~Le~ai~-----~~~tklV~lesPsNPtG~v~-d---l~~I~ela~~ 324 (466)
+ ..+.+++..+ . +.+++.++ ..++.+|++|.+.+..|.+. + +++|.++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~ 238 (442)
T TIGR00709 159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK 238 (442)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 0 0122222111 1 12333332 12488999998877767654 3 7899999999
Q ss_pred cCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH
Q 012321 325 KGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL 398 (466)
Q Consensus 325 ~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l 398 (466)
||+++|.||++... .+ ......-.|+++ ++|.+++ | ...|+++++++ ++.+...........+|..+..
T Consensus 239 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G-~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aa 313 (442)
T TIGR00709 239 HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-G-LPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVT 313 (442)
T ss_pred cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-C-cccEEEEEchH-HhccCCCcCCCCCCcCHHHHHH
Confidence 99999999996532 11 111223358888 7999998 4 45677777777 4443211111111235666665
Q ss_pred HHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCcEEEeCCCC
Q 012321 399 IIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGL 438 (466)
Q Consensus 399 ~lrgL~tl~~--R~e~~~~na~~La~~L~----~~p~V~~V~~PgL 438 (466)
++..|+.+.. ..++..+...+|.+.|+ ++|.|..|+..||
T Consensus 314 a~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl 359 (442)
T TIGR00709 314 GTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGL 359 (442)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence 5555555431 23344445555555554 4666666665543
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-09 Score=109.87 Aligned_cols=223 Identities=18% Similarity=0.232 Sum_probs=144.4
Q ss_pred CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHH-HHhhc-c--------cC
Q 012321 207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IETVL-P--------KM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~-~~~~l-~--------~~ 273 (466)
..++...+|.++|.++.. .+.+.+++||++|+..++.... ....+||.....|++.... +...- . ..
T Consensus 90 ~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 169 (428)
T PRK12389 90 TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 169 (428)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCC
Confidence 467778888888888764 4678888999999999887432 2346788888888774322 21100 0 01
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012321 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--- 338 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~--- 338 (466)
++ .+..++..|++.+++.+++ .++.+|++|...+..|.+.+ +++|.++|+++|+++|+||++...
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~ 249 (428)
T PRK12389 170 GVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFM 249 (428)
T ss_pred CCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 11 2334455688999888852 24889999988877888877 899999999999999999996532
Q ss_pred Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-HHhC--CCchHHHHHHHHHhhHHHH--HHHH
Q 012321 339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLG--GALNPNAAYLIIRGMKTLH--LRVQ 411 (466)
Q Consensus 339 ~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~~~G--~~ls~~~A~l~lrgL~tl~--~R~e 411 (466)
.. +.......|++ ++.|.+++. ...|.+++++++++.+.... ...+ ...+|..+..++..|+.+. ..++
T Consensus 250 ~~~a~~~~gv~PDiv--t~gK~lggG--~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~ 325 (428)
T PRK12389 250 YGGAQDLLGVEPDLT--ALGKIIGGG--LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYE 325 (428)
T ss_pred cchhhHHhCCCCCee--eechhhcCC--CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHH
Confidence 11 11222346775 579999864 34566788999888774211 1112 1345666665555555543 2345
Q ss_pred HHHHHHHHHHHHHHc----CCCcEEE
Q 012321 412 QQNSTALRMAKILEA----HPKVKRV 433 (466)
Q Consensus 412 ~~~~na~~La~~L~~----~p~V~~V 433 (466)
+..+..++|.+.|++ +|.+..+
T Consensus 326 ~~~~~g~~l~~~L~~l~~~~~~~~~v 351 (428)
T PRK12389 326 KLDRLGAMLEEGILEAAEKHGITITI 351 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 555666666666654 6654444
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=114.17 Aligned_cols=231 Identities=13% Similarity=0.128 Sum_probs=138.5
Q ss_pred CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhh------cc-cC
Q 012321 206 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV------LP-KM 273 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~------l~-~~ 273 (466)
.+.++...+|.++|.++.+. +.+.+++||++|+..++.... ....+|+.....|++.......+ .. .+
T Consensus 79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 158 (425)
T PRK07495 79 VVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF 158 (425)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence 45678888899999998753 467888999999998887432 23467888888887743211110 00 01
Q ss_pred C---cEEEEeCCC----------CHHHHHHhcc----CCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEe
Q 012321 274 G---ITATVIDPA----------DMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCID 332 (466)
Q Consensus 274 g---i~v~~vd~~----------D~e~Le~ai~----~~~tklV~lesPsNPtG~v~-d---l~~I~ela~~~gillIvD 332 (466)
+ ..+..++.. +++++++.++ ..++++|++|....-+|.+. + +++|.++|++||+++|+|
T Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D 238 (425)
T PRK07495 159 GAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD 238 (425)
T ss_pred CCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1 122233221 1445566653 23589999987765567443 3 789999999999999999
Q ss_pred CCCCCC-Cccch---hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH
Q 012321 333 GTFATP-LNQKA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408 (466)
Q Consensus 333 ~t~a~~-~~~~p---l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~ 408 (466)
|++... ..... ...|...-+.+++|.+++. ...|++++++++++.+...........++..+..++..++.+..
T Consensus 239 Ev~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~ 316 (425)
T PRK07495 239 EVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG--FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE 316 (425)
T ss_pred chhhcCCcCCCceeecccCCCCCEEeehhhhcCC--ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 997531 11111 1223333356789999864 45788999999887765322222223456665554444544432
Q ss_pred --HHHHHHHHHHHHHHHH----HcCCCcEEEeCCCC
Q 012321 409 --RVQQQNSTALRMAKIL----EAHPKVKRVHYPGL 438 (466)
Q Consensus 409 --R~e~~~~na~~La~~L----~~~p~V~~V~~PgL 438 (466)
..++..+..+++.+.| +.+|.+..|+.+|+
T Consensus 317 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl 352 (425)
T PRK07495 317 EDLCERANQLGNRLKQRLASLRETVPEIADIRGPGF 352 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCce
Confidence 2233334444444433 34677777776664
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-09 Score=111.66 Aligned_cols=228 Identities=16% Similarity=0.160 Sum_probs=138.2
Q ss_pred CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CCCEEEEcCCCccchH-HHHHh-------
Q 012321 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AGGHIVTTTDCYRKTR-IFIET------- 268 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~-------pGD~VLv~~~~y~~t~-~~~~~------- 268 (466)
.+.++...+|.++|+++.+. +...+++||++|+..++..... ...+||.....|++.. ..+..
T Consensus 82 ~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~ 161 (428)
T PRK07986 82 GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSM 161 (428)
T ss_pred ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhh
Confidence 34678888999999988753 5778889999999988874431 2367998888887732 11110
Q ss_pred --hcccCCcEEEEeC-----------CCCHHHHHHhccC--CCceEEEEeCC-CCCCcccc-c---HHHHHHHHHhcCCE
Q 012321 269 --VLPKMGITATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCV-D---VKLVSDLCHKKGAI 328 (466)
Q Consensus 269 --~l~~~gi~v~~vd-----------~~D~e~Le~ai~~--~~tklV~lesP-sNPtG~v~-d---l~~I~ela~~~gil 328 (466)
......-.+.+++ ..|++++++.++. .++.+|++|.. ..-.|.+. + +++|.++|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~l 241 (428)
T PRK07986 162 HSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGIL 241 (428)
T ss_pred hhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0000000111121 1255677777742 24789999985 44445432 2 89999999999999
Q ss_pred EEEeCCCCCCCc-------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-----HHhCCCchHHHH
Q 012321 329 VCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNAA 396 (466)
Q Consensus 329 lIvD~t~a~~~~-------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-----~~~G~~ls~~~A 396 (466)
+|+||++ +++. ..-.....||++ ++|.++|. -+..|.+++++++++.+.... .......+|..+
T Consensus 242 LI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG-~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~ 317 (428)
T PRK07986 242 LIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTGG-TMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLAC 317 (428)
T ss_pred EEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhCC-cccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHH
Confidence 9999996 3221 111222357775 89999753 134577788888888775411 111112356666
Q ss_pred HHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCcEEEeCCC
Q 012321 397 YLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPG 437 (466)
Q Consensus 397 ~l~lrgL~tl~~--R~e~~~~na~~La~~L~~---~p~V~~V~~Pg 437 (466)
..++..|+.+.. .+++..+..+++.+.|++ +|.|..|+..|
T Consensus 318 aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~G 363 (428)
T PRK07986 318 AVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLG 363 (428)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccc
Confidence 666555555432 345555566666665554 45565555444
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-09 Score=112.00 Aligned_cols=228 Identities=12% Similarity=0.130 Sum_probs=136.8
Q ss_pred CCchhHHHHHHHHHhhhC-C--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCccchHH-HHHhh-c---
Q 012321 207 YGNPTTVVVEEKMSALEG-A--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTRI-FIETV-L--- 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g-~--e~~v~~~SG~aAi~~al~all-------~pG-D~VLv~~~~y~~t~~-~~~~~-l--- 270 (466)
..++...+|+++|.+++. . +.+++++||++|+..++.... .++ .+||..+..|++... .+... .
T Consensus 130 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~ 209 (504)
T PLN02760 130 RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPAL 209 (504)
T ss_pred cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhh
Confidence 356778889999888853 2 457788999999999887653 122 578888888877421 11100 0
Q ss_pred -ccCCc---EEEEeCCC----------C--------HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012321 271 -PKMGI---TATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL 321 (466)
Q Consensus 271 -~~~gi---~v~~vd~~----------D--------~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~el 321 (466)
..++. .+..++.. + .+++++.+. ++++.+|++|......|.+.+ +++|.++
T Consensus 210 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~l 289 (504)
T PLN02760 210 HQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAV 289 (504)
T ss_pred ccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence 01111 01122210 1 134666653 224889999988877788877 9999999
Q ss_pred HHhcCCEEEEeCCCC-CCC---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-------HHHhC
Q 012321 322 CHKKGAIVCIDGTFA-TPL---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLG 388 (466)
Q Consensus 322 a~~~gillIvD~t~a-~~~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~~~G 388 (466)
|++||+++|+||++. .+- . ..-...-.||++ +.|.+++.. +..|.+++++++++.+... .....
T Consensus 290 c~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG~-~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T 366 (504)
T PLN02760 290 LKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSAY-MPIGAVLVSPEISDVIHSQSNKLGSFAHGFT 366 (504)
T ss_pred HHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCCc-cccceEeecHHHHhhhhcccccccCcccCCC
Confidence 999999999999963 211 1 121222357654 789998642 1246688888888877531 11111
Q ss_pred CCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCcEEEeCCC
Q 012321 389 GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYPG 437 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~---~~p~V~~V~~Pg 437 (466)
...+|..+..++..|+.+.. .+++..+...+|.+.|+ ++|.|..|..-|
T Consensus 367 ~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~G 420 (504)
T PLN02760 367 YSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTG 420 (504)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCc
Confidence 12356666666666655542 24555555556555554 355555444333
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.1e-09 Score=110.25 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=137.7
Q ss_pred CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHH-HH-------
Q 012321 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-IE------- 267 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~-~~------- 267 (466)
.+.++...+|.++|.++.. .+.+.+++||++|+..++..... + ..+||.....|++.... +.
T Consensus 90 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~ 169 (461)
T PRK07482 90 GHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLF 169 (461)
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchh
Confidence 4567888899999998874 36788889999999998875421 2 35788888888773211 10
Q ss_pred -hhcccCCcEEEEeCC------------------CCHHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012321 268 -TVLPKMGITATVIDP------------------ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL 321 (466)
Q Consensus 268 -~~l~~~gi~v~~vd~------------------~D~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~el 321 (466)
......--.+..++. .+++++++.+. ..++.+|++|......|.+.+ +++|.++
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~l 249 (461)
T PRK07482 170 HQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAV 249 (461)
T ss_pred hhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence 000000001111110 03567777773 234899999987766676643 7899999
Q ss_pred HHhcCCEEEEeCCCCCC----C--ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-----HHhCC-
Q 012321 322 CHKKGAIVCIDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGG- 389 (466)
Q Consensus 322 a~~~gillIvD~t~a~~----~--~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-----~~~G~- 389 (466)
|++||+++|+||++... . ...-...-.|+++ +.|.++|.- ...|.+++++++.+.+.... ...+.
T Consensus 250 c~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T 326 (461)
T PRK07482 250 LKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAY-APLSGSIVGEKVWDVLEQGSDEHGAIGHGWT 326 (461)
T ss_pred HHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCc-cccceeeecHHHHHHHhcccccCCccccCCC
Confidence 99999999999995421 1 1222233468888 589998742 12466677888877664210 01121
Q ss_pred -CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCcEEEeCCC
Q 012321 390 -ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRVHYPG 437 (466)
Q Consensus 390 -~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L----~~~p~V~~V~~Pg 437 (466)
.-+|..+..++..|+.+.. .+++..+..++|.+.| +++|.|..|.-.|
T Consensus 327 ~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~G 381 (461)
T PRK07482 327 YSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVG 381 (461)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeece
Confidence 2356666665555555432 2334444444444444 4577776665544
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=110.19 Aligned_cols=215 Identities=22% Similarity=0.305 Sum_probs=151.1
Q ss_pred HHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 214 VVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 214 ~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all---~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.++..+++|.|.+ ++=++-.++++-.+++++.- .+.++++++..+|+.+...++...+.+|+++..++..|.+++
T Consensus 124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l 203 (450)
T COG0403 124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDL 203 (450)
T ss_pred HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhh
Confidence 4477889999974 56667777765566555542 335899999999999999998888999999999998899999
Q ss_pred HHhccCCCceEEEEeCCCCCCc-ccccHHHHHHHHHhcCCEEEEeCC-CCCCCccchhccCCcEEEeccccc-----ccc
Q 012321 289 EAALNNNNVSLFFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF-----IGG 361 (466)
Q Consensus 289 e~ai~~~~tklV~lesPsNPtG-~v~dl~~I~ela~~~gillIvD~t-~a~~~~~~pl~~gaDivv~S~sK~-----lgG 361 (466)
+++ ++..+..|+++.|+ -.| ...|+.+|.+.+|++|+++++=.- .+-.++..|.++|+||++.+..-+ |||
T Consensus 204 ~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGG 281 (450)
T COG0403 204 ESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGG 281 (450)
T ss_pred hhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCC
Confidence 988 54348999999999 567 677899999999999988776432 344567888999999999998864 566
Q ss_pred ccCceEEEEEeChHHHHHH----------------------------HHHHHHhCCCchH------HHHHHHHHhhHHHH
Q 012321 362 HNDVLAGSISGSGKLVTQI----------------------------RNLHHVLGGALNP------NAAYLIIRGMKTLH 407 (466)
Q Consensus 362 ~gdv~gG~vvg~~eli~~l----------------------------~~~~~~~G~~ls~------~~A~l~lrgL~tl~ 407 (466)
|. +|+...++++..++ |+-+...+.+.++ ...|+..-|-+-+.
T Consensus 282 Ph---ag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk 358 (450)
T COG0403 282 PH---AGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLK 358 (450)
T ss_pred cc---eeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHH
Confidence 64 68877666554332 2211111212111 12233333444444
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 408 LRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
..-++..+.+..+++.|++......+
T Consensus 359 ~iA~r~~~~a~~la~~L~~~~~g~~~ 384 (450)
T COG0403 359 EIAERIHRLAAYLAAGLKEIGAGVEL 384 (450)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 44456677888999999976643333
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-09 Score=112.42 Aligned_cols=228 Identities=12% Similarity=0.175 Sum_probs=139.5
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHH-HH--------
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-IE-------- 267 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~-~~-------- 267 (466)
+.++...+|.++|+++.. .+.+.+++||++|+..++..... + ..+||.....|++.... +.
T Consensus 89 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~ 168 (445)
T PRK09221 89 MGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNR 168 (445)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhh
Confidence 457888889999999874 36788899999999988874321 1 35788888888773211 10
Q ss_pred hhcccCCcEEEEeCCC------------------CHHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012321 268 TVLPKMGITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 268 ~~l~~~gi~v~~vd~~------------------D~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela 322 (466)
.........+..++.. ..+++++.++ .+++.+|++|......|.+.+ +++|.++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc 248 (445)
T PRK09221 169 KMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREIC 248 (445)
T ss_pred hccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence 0000000111122111 1346666664 134889999998887888887 99999999
Q ss_pred HhcCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-------HHHhCC
Q 012321 323 HKKGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG 389 (466)
Q Consensus 323 ~~~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~~~G~ 389 (466)
+++|+++|+||++... .. ..-.....|++ +++|.+++.. ...|.+++++++++.+..- ......
T Consensus 249 ~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~--~~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~ 325 (445)
T PRK09221 249 DKHGILLIFDEVITGFGRLGAAFAAERFGVTPDII--TFAKGLTNGA-IPMGAVIASDEIYDAFMQGPEYAIEFFHGYTY 325 (445)
T ss_pred HHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEE--EeccccccCc-ccceeeEEcHHHHHhhccCcccccccccccCC
Confidence 9999999999996421 11 11122234766 5789997642 1246678888888776421 111112
Q ss_pred CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCcEEEeCCC
Q 012321 390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRVHYPG 437 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~---~p~V~~V~~Pg 437 (466)
..+|..+..++..|+.+. ..+++..+..+++.+.|++ +|.|..|+.-|
T Consensus 326 ~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~G 378 (445)
T PRK09221 326 SAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIG 378 (445)
T ss_pred CcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCc
Confidence 235666555555555543 2345666666667666654 35555554443
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-09 Score=110.57 Aligned_cols=229 Identities=18% Similarity=0.194 Sum_probs=138.1
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhh------c
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETV------L 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~------l 270 (466)
+.++...+|.++|.++.. .+.+.+.+||++|+..++..... + ..+||.....|++.......+ -
T Consensus 87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~ 166 (459)
T PRK05965 87 FGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFH 166 (459)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhh
Confidence 456777889999998864 35677778999999998875321 2 357888888888743211011 0
Q ss_pred ccCCc---EEEEeCC---------CC--------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012321 271 PKMGI---TATVIDP---------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCH 323 (466)
Q Consensus 271 ~~~gi---~v~~vd~---------~D--------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I~ela~ 323 (466)
..++. .+..++. .| ++++++.+.. +++.+|++|......|.+.+ +++|.++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~ 246 (459)
T PRK05965 167 RGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR 246 (459)
T ss_pred cccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHH
Confidence 01111 0111210 12 2567777742 34899999988766676653 789999999
Q ss_pred hcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-----HHhC--CC
Q 012321 324 KKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLG--GA 390 (466)
Q Consensus 324 ~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-----~~~G--~~ 390 (466)
+||+++|.||++.. +.+ ..-...-.||++ +.|.++|.- +..|.+++++++++.+..-. ...+ ..
T Consensus 247 ~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~ 323 (459)
T PRK05965 247 ELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTSGY-VPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYS 323 (459)
T ss_pred HcCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhccCC-cceeEEEEcHHHHHHHhccccccccccccCCCC
Confidence 99999999999642 111 222233468887 579998752 23677788888887764210 0112 22
Q ss_pred chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCcEEEeCCCC
Q 012321 391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGL 438 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~~---~p~V~~V~~PgL 438 (466)
-+|..+..++..|+.+.. .+++..+...+|.+.|++ +|.|..|+--|+
T Consensus 324 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl 376 (459)
T PRK05965 324 AHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGL 376 (459)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecce
Confidence 456666666655655532 234444445555555543 565655554443
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-10 Score=125.66 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh-ccCC--CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAG--GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~al-l~pG--D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
..+++..+++|.|. +++-++.+++++..++++++ +.+| |+|++++..|+.+...+...++..|++++.++..+.+
T Consensus 150 l~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~ 229 (993)
T PLN02414 150 LLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD 229 (993)
T ss_pred HHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc
Confidence 56678899999997 46778888888888877766 4544 7899999999999888877788899999988753322
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC--CCccchhccCCcEEEecccccc-----
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLHSATKFI----- 359 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~--~~~~~pl~~gaDivv~S~sK~l----- 359 (466)
...+ .+..+++..|+ .+|.+.|+++|+++||++|+++++ .+... .....|-++|+||++.+.+||.
T Consensus 230 ----~~~~-~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~ 302 (993)
T PLN02414 230 ----YSSG-DVCGVLVQYPA-TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGY 302 (993)
T ss_pred ----cccC-ceEEEEEecCC-CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCC
Confidence 2222 25566666665 589999999999999999999999 44322 2223577899999999999998
Q ss_pred ccccCceEEEEEeChHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQ 379 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~ 379 (466)
|||. +|++..++++.+.
T Consensus 303 GGP~---aGflavr~~~~r~ 319 (993)
T PLN02414 303 GGPH---AAFLATSQEYKRL 319 (993)
T ss_pred CCCC---eeEEEECHHHHhh
Confidence 5553 6899888876553
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-09 Score=111.70 Aligned_cols=234 Identities=19% Similarity=0.208 Sum_probs=139.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhh-c---c-
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-L---P- 271 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~-l---~- 271 (466)
+...++.++...+|.++|+++.+. +.+.+.+||++|+..++.... ....+||.....|++.. ..+... . .
T Consensus 105 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 184 (459)
T PRK06082 105 FSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQ 184 (459)
T ss_pred CccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCccccc
Confidence 333466788899999999999853 567788899999998886432 23467888888777743 222110 0 0
Q ss_pred cCC---cEEEEeC--------CCC--------HHHHHHhccC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCE
Q 012321 272 KMG---ITATVID--------PAD--------MEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAI 328 (466)
Q Consensus 272 ~~g---i~v~~vd--------~~D--------~e~Le~ai~~-~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gil 328 (466)
.++ -.+..++ ..+ ++.+++.++. .++.+|++|...+..+.+.+ +++|.++|++||++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~l 264 (459)
T PRK06082 185 GMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVL 264 (459)
T ss_pred CCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 000 0111121 111 2457777752 24889999988765444455 89999999999999
Q ss_pred EEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012321 329 VCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG 402 (466)
Q Consensus 329 lIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg 402 (466)
+|+||++.. +.. ........||++ ++|.+++.. ...|.+++++++...............+|..+..++..
T Consensus 265 lI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~-~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~ 341 (459)
T PRK06082 265 LIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGL-VPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALAT 341 (459)
T ss_pred EEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCC-CcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence 999999642 111 122223468887 799999752 23567777777654322100011123456666655555
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHc----CCCcEEEeCCCC
Q 012321 403 MKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGL 438 (466)
Q Consensus 403 L~tl~~--R~e~~~~na~~La~~L~~----~p~V~~V~~PgL 438 (466)
|+.+.. .+++..+..++|.+.|++ +|.|..|..-|+
T Consensus 342 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl 383 (459)
T PRK06082 342 IEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGL 383 (459)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccc
Confidence 555432 344555555555555543 566666665554
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=110.87 Aligned_cols=222 Identities=20% Similarity=0.260 Sum_probs=146.8
Q ss_pred CCCccCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhc------
Q 012321 200 ASFEYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL------ 270 (466)
Q Consensus 200 ~~~~Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l------ 270 (466)
.+..|+. +++.--.+.+.|.++.+. |..-+++||++|...+++.. ....|+|+..+.+|++....+-.-.
T Consensus 84 ~G~~fg~-Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t 162 (432)
T COG0001 84 RGLSFGA-PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAAT 162 (432)
T ss_pred hcCCCCC-CCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCccc
Confidence 3566765 344445667788888876 88999999999988887643 2446899999999988654331110
Q ss_pred ----ccCCc------EEEEeCCCCHHHHHHhccCC--CceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCC
Q 012321 271 ----PKMGI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGT 334 (466)
Q Consensus 271 ----~~~gi------~v~~vd~~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t 334 (466)
...|+ .+..++-+|++.+++++++. ++.+|++|-.-.-.|.+.+ +++|.++|+++|++||.||+
T Consensus 163 ~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 163 LGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 11123 23345667999999998764 5899999887766777665 78999999999999999999
Q ss_pred CCCC-----CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH-hCCCc--hHHHHHHHHHhhHHH
Q 012321 335 FATP-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-LGGAL--NPNAAYLIIRGMKTL 406 (466)
Q Consensus 335 ~a~~-----~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~-~G~~l--s~~~A~l~lrgL~tl 406 (466)
.... -.|.....-.|+. .+.|.+||.- ..|++-+++++++.+...... .++++ +|......+..++.+
T Consensus 243 iTGFR~~~gGaq~~~gi~PDlt--tlGKiIGGGl--P~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l 318 (432)
T COG0001 243 ITGFRVALGGAQGYYGVEPDLT--TLGKIIGGGL--PIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL 318 (432)
T ss_pred hhhcccCCcccccccCcCcchh--hhhhhhcCCc--ceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHH
Confidence 5321 1233333345655 4789999763 678999999999876543322 12222 333333333333333
Q ss_pred HH---HHHHHHHHHHHHHHHHHc
Q 012321 407 HL---RVQQQNSTALRMAKILEA 426 (466)
Q Consensus 407 ~~---R~e~~~~na~~La~~L~~ 426 (466)
.. -.++..+.+++|.+.|++
T Consensus 319 ~~~~~~y~~l~~~~~~L~~gl~~ 341 (432)
T COG0001 319 MTEEGVYERLDALGERLAEGLRA 341 (432)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH
Confidence 32 356666777777777665
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-10 Score=108.67 Aligned_cols=181 Identities=16% Similarity=0.223 Sum_probs=117.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhc---cCCC--EEEEc-CCCccchHHH-H-Hhh
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV---PAGG--HIVTT-TDCYRKTRIF-I-ETV 269 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all---~pGD--~VLv~-~~~y~~t~~~-~-~~~ 269 (466)
|.-.....+..++|.+.+.+.+|. ++.+.+|+|+ .+.+.++..+. ..|+ +|+.+ .|.|-+.-.. + ...
T Consensus 70 Y~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~ 149 (417)
T COG3977 70 YDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDL 149 (417)
T ss_pred CCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccc
Confidence 444444466778888888888886 6899999999 55555554332 3354 35443 5666552211 0 011
Q ss_pred cccCCcEEEEeC------CCCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012321 270 LPKMGITATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN 340 (466)
Q Consensus 270 l~~~gi~v~~vd------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~ 340 (466)
+-...-++..++ ..|.++|. +.+ .+.+|.+..|+||||.+. ++.+|.++|++||++|++|++|+.|++
T Consensus 150 fVs~kP~iel~~~g~FKY~vDF~~l~--i~e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP 226 (417)
T COG3977 150 FVSAKPNIELLPAGQFKYHVDFEHLH--IGE-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP 226 (417)
T ss_pred eeeccCCcccccccceeeccCHHHcc--ccc-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC
Confidence 111111111111 23566664 445 389999999999999987 477888899999999999999998765
Q ss_pred cc------hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHh
Q 012321 341 QK------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL 387 (466)
Q Consensus 341 ~~------pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~ 387 (466)
.- ++-...-+.+.|+||. |-+| .+.|++++++++++.+..+....
T Consensus 227 ~iifsd~~~~w~~NiilC~SLSK~-GLPG-~R~GIiIane~viqaitnmn~ii 277 (417)
T COG3977 227 GIIFSDATPLWNENIILCMSLSKL-GLPG-SRCGIIIANEKVIQAITNMNGII 277 (417)
T ss_pred ceecccccccCCCCEEEEeehhhc-CCCC-cceeEEEccHHHHHHHHhcccee
Confidence 22 2222234788999995 4444 47899999999999887665543
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-08 Score=108.68 Aligned_cols=224 Identities=14% Similarity=0.134 Sum_probs=135.4
Q ss_pred CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHH-HHHhh-----cc---
Q 012321 206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETV-----LP--- 271 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~-~~~~~-----l~--- 271 (466)
.+.++...+|.++|.++.+ .+.+.+++||++|+..++.... ...++|+.....|++... .+... ..
T Consensus 93 ~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~ 172 (441)
T PRK05769 93 DFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGF 172 (441)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCC
Confidence 3567888899999998875 3677788999999998887432 234678888888877432 22110 00
Q ss_pred -cCCcEEEEeCC----------CC--------HHHHHH-hc----cCCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012321 272 -KMGITATVIDP----------AD--------MEGLEA-AL----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCH 323 (466)
Q Consensus 272 -~~gi~v~~vd~----------~D--------~e~Le~-ai----~~~~tklV~lesPsNPtG~v~d----l~~I~ela~ 323 (466)
...-.+..++. .+ .+.+++ .+ ...++.+|++|......|.+.+ +++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~ 252 (441)
T PRK05769 173 FPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLAD 252 (441)
T ss_pred CCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence 00001222221 11 233555 22 2235899999988877888887 999999999
Q ss_pred hcCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-HHhCCCchHHHH
Q 012321 324 KKGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGALNPNAA 396 (466)
Q Consensus 324 ~~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~~~G~~ls~~~A 396 (466)
++|+++|+||++... .. ........|+++ ++|.+++. ..+|++++++++++.+...+ ..++ .+|..+
T Consensus 253 ~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~G--~p~gav~~~~~i~~~~~~~~~~T~~--g~p~~~ 326 (441)
T PRK05769 253 KYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAGG--LPLGAVIGRAELMFLPPGSHANTFG--GNPVAA 326 (441)
T ss_pred HcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccCC--cccEEEEEehhhhhcCCCCCCCCCC--cCHHHH
Confidence 999999999997531 11 111122358775 68999864 35678888888765332111 1122 255555
Q ss_pred HHHHHhhHHHH-HHHHHHHHHHHHHHHHHHc----CCCcEEEeC
Q 012321 397 YLIIRGMKTLH-LRVQQQNSTALRMAKILEA----HPKVKRVHY 435 (466)
Q Consensus 397 ~l~lrgL~tl~-~R~e~~~~na~~La~~L~~----~p~V~~V~~ 435 (466)
..++..|+.+. ..+++..+..++|.+.|++ +|.+..|..
T Consensus 327 aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg 370 (441)
T PRK05769 327 AAALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIGDVRG 370 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec
Confidence 55555555443 2344555555666665543 565555543
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-09 Score=109.68 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=137.8
Q ss_pred CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHHHHhh--------
Q 012321 207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV-------- 269 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~~~~~~-------- 269 (466)
+.++...+|.++|.++.+. +.+.+.+||++|+..++..... +| .+||.....|++........
T Consensus 86 ~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 165 (451)
T PRK07678 86 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY 165 (451)
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence 5677888999999998865 3566778999999988875421 23 57888888887743211111
Q ss_pred -cccCCcEEEEeCCC--------------C---HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012321 270 -LPKMGITATVIDPA--------------D---MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (466)
Q Consensus 270 -l~~~gi~v~~vd~~--------------D---~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela~~ 324 (466)
.....-.+..++.. | ++.+++.++ ..++.+|++|....-.|.+.+ +++|.++|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~ 245 (451)
T PRK07678 166 KYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK 245 (451)
T ss_pred ccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 00000011112110 1 223555563 235899999987766676654 8999999999
Q ss_pred cCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH------HHHhCCCch
Q 012321 325 KGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL------HHVLGGALN 392 (466)
Q Consensus 325 ~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~------~~~~G~~ls 392 (466)
||+++|+||++.. +-+ .+-...-.||++ +.|.+++.. ...|.+++++++++.+... ........+
T Consensus 246 ~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~-~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gn 322 (451)
T PRK07678 246 HGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAY-LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGN 322 (451)
T ss_pred cCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCC-cceeEEEEcHHHHHHHhccCcccccccCCCCCcC
Confidence 9999999999632 211 122233468885 689998753 3467888899988777531 111112345
Q ss_pred HHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCcEEEeCCC
Q 012321 393 PNAAYLIIRGMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRVHYPG 437 (466)
Q Consensus 393 ~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L----~~~p~V~~V~~Pg 437 (466)
|..+..++..|+.+.. .+++..+..++|.+.| +++|.|..|..-|
T Consensus 323 p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~G 373 (451)
T PRK07678 323 PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKG 373 (451)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 6666666656655532 3344444545554444 4567666665443
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-09 Score=108.84 Aligned_cols=228 Identities=14% Similarity=0.152 Sum_probs=139.7
Q ss_pred CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccch-HHHHHhh-----
Q 012321 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKT-RIFIETV----- 269 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t-~~~~~~~----- 269 (466)
.+.++...+|.++|.++.. .+.+.+.+||++|+..++..... + ..+||.....|++. ...+...
T Consensus 83 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~ 162 (429)
T PRK06173 83 GFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG 162 (429)
T ss_pred ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchh
Confidence 3457788889999998864 36788889999999988875431 2 35788888888773 2111100
Q ss_pred c-ccCC---cEEEEeCC-----------CCHHHHHHhcc--CCCceEEEEeCC-CCCCcccc-c---HHHHHHHHHhcCC
Q 012321 270 L-PKMG---ITATVIDP-----------ADMEGLEAALN--NNNVSLFFTESP-TNPFLRCV-D---VKLVSDLCHKKGA 327 (466)
Q Consensus 270 l-~~~g---i~v~~vd~-----------~D~e~Le~ai~--~~~tklV~lesP-sNPtG~v~-d---l~~I~ela~~~gi 327 (466)
. ..++ -.+.+++. .+++.|++.+. ..++.+|++|.. ..-.|.+. + +++|.++|++||+
T Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~ 242 (429)
T PRK06173 163 MHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV 242 (429)
T ss_pred hhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence 0 0000 01122221 13566777774 235899999985 55556553 3 7899999999999
Q ss_pred EEEEeCCCCCCCc-------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH---HHhC--CCchHHH
Q 012321 328 IVCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLG--GALNPNA 395 (466)
Q Consensus 328 llIvD~t~a~~~~-------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~---~~~G--~~ls~~~ 395 (466)
++|+||++ +++. ........||++ ++|.++|. -+..+.+++++++++.+.... ...+ ...+|..
T Consensus 243 llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~ 318 (429)
T PRK06173 243 LLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALTGG-YLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLA 318 (429)
T ss_pred eEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhhCC-ccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHH
Confidence 99999997 3321 111222357776 89999653 223577788888887764210 1122 1245666
Q ss_pred HHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCcEEEeCCC
Q 012321 396 AYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPG 437 (466)
Q Consensus 396 A~l~lrgL~tl~~--R~e~~~~na~~La~~L~~---~p~V~~V~~Pg 437 (466)
+..++..|+.+.. .+++..++.++|.+.|++ +|.|..|+..|
T Consensus 319 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~G 365 (429)
T PRK06173 319 CAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLG 365 (429)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccc
Confidence 6666666665542 356666677777777763 45555444443
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=113.98 Aligned_cols=209 Identities=20% Similarity=0.235 Sum_probs=132.5
Q ss_pred HHHHHHHHHhhhCCCcE--EEeCCHHHHHHHHHHH---hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGAEST--VIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e~~--v~~~SG~aAi~~al~a---ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
.-+++..++++.|.+-+ =+...++++-.+++++ .-+.+++|+++...|+.+...++..+...|+++..++..+..
T Consensus 112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~ 191 (429)
T PF02347_consen 112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG 191 (429)
T ss_dssp HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC
T ss_pred HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC
Confidence 45678999999998743 3455555433333333 334456999999999999888887788889999887743211
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC--CCCCCccchhccCCcEEEecccccccccc-
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSATKFIGGHN- 363 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t--~a~~~~~~pl~~gaDivv~S~sK~lgG~g- 363 (466)
... ++ ++..|++++|+ -.|.+.|+++|++++|++|+++++ .+ -+-..+..|-++|+||++.+ +|.||.|-
T Consensus 192 ~~d---~~-~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~ 264 (429)
T PF02347_consen 192 TTD---DD-DTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMG 264 (429)
T ss_dssp SB----ST-TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---C
T ss_pred Ccc---cc-CeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCC
Confidence 111 34 59999999998 589999999999999999999987 55 23345688999999999877 77765221
Q ss_pred --CceEEEEEeChHHHHHHH----------------------------HHHH--HhCCC--chH--HHHHHHHHhhHHHH
Q 012321 364 --DVLAGSISGSGKLVTQIR----------------------------NLHH--VLGGA--LNP--NAAYLIIRGMKTLH 407 (466)
Q Consensus 364 --dv~gG~vvg~~eli~~l~----------------------------~~~~--~~G~~--ls~--~~A~l~lrgL~tl~ 407 (466)
+-..|++.++++++.++- +.+. ++++. +-. ...|+++.|-+-|.
T Consensus 265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~ 344 (429)
T PF02347_consen 265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR 344 (429)
T ss_dssp CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence 113688887776554431 1110 11111 111 23566666777777
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 012321 408 LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~ 427 (466)
..-++...++.++++.|++.
T Consensus 345 ~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 345 EIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp HHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77788899999999999986
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=108.00 Aligned_cols=229 Identities=14% Similarity=0.175 Sum_probs=137.1
Q ss_pred CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cC-CCEEEEcCCCccchHHHHHhhc-----
Q 012321 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PA-GGHIVTTTDCYRKTRIFIETVL----- 270 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all-------~p-GD~VLv~~~~y~~t~~~~~~~l----- 270 (466)
.+.++...+|.++|+++.+. +.+.+++||++|+..++.... .+ ..+||.....|++.......+-
T Consensus 93 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~ 172 (453)
T PRK06943 93 GCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALF 172 (453)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhh
Confidence 34677888999999998764 467888999999999887542 12 3679988888887431110000
Q ss_pred ----ccCCcEEEEeCC-----------------CCHHHHHHhccC--CCceEEEEeC-CCCCCccccc----HHHHHHHH
Q 012321 271 ----PKMGITATVIDP-----------------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 271 ----~~~gi~v~~vd~-----------------~D~e~Le~ai~~--~~tklV~les-PsNPtG~v~d----l~~I~ela 322 (466)
...-..+..++. .+++++++.+.. .++.+|++|. +..-.|.+.+ +++|.++|
T Consensus 173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc 252 (453)
T PRK06943 173 KDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALC 252 (453)
T ss_pred hcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHH
Confidence 000001111211 124667777742 3589999998 3555566543 78999999
Q ss_pred HhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH----HHhCC--C
Q 012321 323 HKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLGG--A 390 (466)
Q Consensus 323 ~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~----~~~G~--~ 390 (466)
++||+++|+||++.. +.+ ......-.||++ +.|.++|. -...|.+++++++.+.+..-. ...+. .
T Consensus 253 ~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~ 329 (453)
T PRK06943 253 DRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGISGG-YLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYT 329 (453)
T ss_pred HHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhccC-cccceEEEEcHHHHHhhcccCccCCccCCCCCC
Confidence 999999999999542 111 122233468887 48999864 123677788888887764210 01121 2
Q ss_pred chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCcEEEeCCC
Q 012321 391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPG 437 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~~---~p~V~~V~~Pg 437 (466)
-+|..+..++.-|+.+.. .+++..+..++|.+.|++ +|.|..|.--|
T Consensus 330 gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~G 381 (453)
T PRK06943 330 GNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRG 381 (453)
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccc
Confidence 356666555555555432 234444555555555543 56565555443
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-09 Score=110.03 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=117.6
Q ss_pred CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcc---c----C
Q 012321 206 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---K----M 273 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~---~----~ 273 (466)
.+.++...+|.++|.++.+. +.+.+++||++|+..++.... ....+||.....|++.......+-. . +
T Consensus 93 ~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~ 172 (451)
T PRK06918 93 VMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGF 172 (451)
T ss_pred ccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccC
Confidence 34578888999999998753 467888999999998887432 2345788888888774322111100 0 0
Q ss_pred C---cEEEEeCCCC-----------------HHHHHHhc----cCCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012321 274 G---ITATVIDPAD-----------------MEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK 325 (466)
Q Consensus 274 g---i~v~~vd~~D-----------------~e~Le~ai----~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~ 325 (466)
+ -.+..++..+ .+.+++.+ ..+++.+|++|....-.|.+.+ +++|.++|++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~ 252 (451)
T PRK06918 173 GPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH 252 (451)
T ss_pred CCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc
Confidence 0 0122221100 12333333 2335889999776544465442 78999999999
Q ss_pred CCEEEEeCCCCCCC----ccchhccC--CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH
Q 012321 326 GAIVCIDGTFATPL----NQKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI 399 (466)
Q Consensus 326 gillIvD~t~a~~~----~~~pl~~g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~ 399 (466)
|+++|.||++.... ......++ .|++ +++|.+++ | ...|++++++++++.+...........+++.+..+
T Consensus 253 gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa 328 (451)
T PRK06918 253 GILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGA-G-VPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAA 328 (451)
T ss_pred CCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcC-C-CccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHH
Confidence 99999999975321 11111223 5744 79999984 4 46789999999888765332222223455555554
Q ss_pred HHhhH
Q 012321 400 IRGMK 404 (466)
Q Consensus 400 lrgL~ 404 (466)
+..++
T Consensus 329 ~a~l~ 333 (451)
T PRK06918 329 LAVLD 333 (451)
T ss_pred HHHHH
Confidence 44444
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=107.13 Aligned_cols=226 Identities=15% Similarity=0.149 Sum_probs=132.5
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhcc-----
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP----- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~----- 271 (466)
+.++...+|.++|+++.+ .+.+.+++||++|+..++..... + ..+||.....|++.......+..
T Consensus 80 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~ 159 (422)
T PRK05630 80 LTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGM 159 (422)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccc
Confidence 456778899999998864 36788899999999988875321 2 25788888888773221111100
Q ss_pred --cCC---cEEEEeCC--------CC----HHHHHHhccCCCceEEEEeCC-CCCCcccc-c---HHHHHHHHHhcCCEE
Q 012321 272 --KMG---ITATVIDP--------AD----MEGLEAALNNNNVSLFFTESP-TNPFLRCV-D---VKLVSDLCHKKGAIV 329 (466)
Q Consensus 272 --~~g---i~v~~vd~--------~D----~e~Le~ai~~~~tklV~lesP-sNPtG~v~-d---l~~I~ela~~~gill 329 (466)
.++ -.+.+++. .+ .+.+++.+.+ ++.+|++|.. ..-.|.+. | +++|.++|++||+++
T Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ll 238 (422)
T PRK05630 160 HSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILL 238 (422)
T ss_pred cccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 000 01112211 11 2345555554 4899999974 55556543 2 789999999999999
Q ss_pred EEeCCCCCCCc-------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH----HHhC--CCchHHHH
Q 012321 330 CIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLG--GALNPNAA 396 (466)
Q Consensus 330 IvD~t~a~~~~-------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~----~~~G--~~ls~~~A 396 (466)
|+||++. ++. ......-.||+ ++.|.++|.- ..+|++++++++.+.+.... ...+ ...+|..+
T Consensus 239 I~DEv~t-G~GrtG~~~a~~~~gv~PDi~--t~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~ 314 (422)
T PRK05630 239 IADEIAT-GFGRTGELFATLAAGVTPDIM--CVGKALTGGF-MSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC 314 (422)
T ss_pred EEeccee-CCCcCchhhHHHhcCCCCCee--eeechhhcCc-cccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHH
Confidence 9999963 221 11112235777 6799996531 13688888988887764210 0111 12456665
Q ss_pred HHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCcEEEeCCC
Q 012321 397 YLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYPG 437 (466)
Q Consensus 397 ~l~lrgL~tl~~--R~e~~~~na~~La~~L~---~~p~V~~V~~Pg 437 (466)
..++..++.+.. ..++..+...++.+.|+ ++|.|..|+.-|
T Consensus 315 aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~G 360 (422)
T PRK05630 315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLG 360 (422)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccc
Confidence 555555554432 23444555555555444 345455444433
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-08 Score=107.24 Aligned_cols=228 Identities=16% Similarity=0.192 Sum_probs=133.5
Q ss_pred CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHH-HHhh-----
Q 012321 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIF-IETV----- 269 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~~-~~~~----- 269 (466)
.+.++...+|.++|+++.+. +.+.+++||++|+..++..... +| .+||.....|++.... +...
T Consensus 90 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~ 169 (456)
T PRK07480 90 KTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYM 169 (456)
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhh
Confidence 35678889999999998753 6788899999999988875421 23 4688888888773211 1000
Q ss_pred cccCCc---EEEEeCCC---------C--------HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012321 270 LPKMGI---TATVIDPA---------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 270 l~~~gi---~v~~vd~~---------D--------~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela 322 (466)
-...+. .+..++.. + .+.+++.+. ..++.+|++|....-.|.+.+ +++|.++|
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc 249 (456)
T PRK07480 170 HEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRIC 249 (456)
T ss_pred hcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence 000110 11112210 1 255555442 134899999988766677664 89999999
Q ss_pred HhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH-HH-HHhC--CCch
Q 012321 323 HKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LH-HVLG--GALN 392 (466)
Q Consensus 323 ~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~-~~-~~~G--~~ls 392 (466)
++||+++|+||++.. +.. ..-...-.||++ ++|.++|.- ...|.+++++++++.+.. .. ...+ ...+
T Consensus 250 ~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gn 326 (456)
T PRK07480 250 RKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSGY-IPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGH 326 (456)
T ss_pred HHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccCC-ccceEEEEcHHHHHHHhcCCCCcccCCCCCcC
Confidence 999999999999632 211 122222357765 689998741 124667778888877631 11 0111 1235
Q ss_pred HHHHHHHHHhhHHHHH--HHHHH-HHHHHHHHHHHH---cCCCcEEEeCC
Q 012321 393 PNAAYLIIRGMKTLHL--RVQQQ-NSTALRMAKILE---AHPKVKRVHYP 436 (466)
Q Consensus 393 ~~~A~l~lrgL~tl~~--R~e~~-~~na~~La~~L~---~~p~V~~V~~P 436 (466)
|..+..++..|+.+.. .+++. .+..++|.+.|+ ++|.|..|.--
T Consensus 327 pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~ 376 (456)
T PRK07480 327 PVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGV 376 (456)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEee
Confidence 6666666555555432 22333 234444444443 45555555433
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=106.76 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=108.8
Q ss_pred CchhHHHHHHHHHhhh--C--CC-cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhh------cccC
Q 012321 208 GNPTTVVVEEKMSALE--G--AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV------LPKM 273 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~--g--~e-~~v~~-~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~------l~~~ 273 (466)
.++...+|.++|+++. + .. ...++ +||++|+..++.... ....+||.....|++........ -..+
T Consensus 76 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~ 155 (412)
T TIGR02407 76 ATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGA 155 (412)
T ss_pred CcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCC
Confidence 4677788888888864 2 22 34554 799999999887543 23467888888887743221111 0111
Q ss_pred C---cEEEEeCC--------CCHHHHHHhccC-----CCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEeC
Q 012321 274 G---ITATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDG 333 (466)
Q Consensus 274 g---i~v~~vd~--------~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~-d---l~~I~ela~~~gillIvD~ 333 (466)
+ ..+..++. .+++.+++.+++ .++.+|++|...+..|.+. + +++|.++|+++|+++|+||
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 235 (412)
T TIGR02407 156 GVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDD 235 (412)
T ss_pred CCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1 12233332 236678887752 2478999999988888754 3 7899999999999999999
Q ss_pred CCCCC------CccchhccCCcEEEeccccccccccCceEEEEEeChHH
Q 012321 334 TFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL 376 (466)
Q Consensus 334 t~a~~------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el 376 (466)
++... +.........|+++ ++|.+++.| ...|++++++++
T Consensus 236 V~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G-~pigav~~~~~~ 281 (412)
T TIGR02407 236 IQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYG-LPLALTLIKPEL 281 (412)
T ss_pred hhhCCCccchhHHhcccCCCCCEEE--echhccCCc-cceeEEEEchhh
Confidence 97521 11222334568775 679998744 457888887775
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-08 Score=105.99 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=133.8
Q ss_pred CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc-----ccCCc---
Q 012321 208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PKMGI--- 275 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l-----~~~gi--- 275 (466)
.++...+|.++|+++.+. +.+.+++||++|+..++.... ....+||.....|++.......+. .+.+.
T Consensus 94 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~ 173 (457)
T PRK05639 94 HSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPL 173 (457)
T ss_pred CCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCC
Confidence 357778899999988753 578888999999998887542 334578888888877332111110 00010
Q ss_pred --EEEEeCCC-------------CH--------HHHHHhc-----cCCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012321 276 --TATVIDPA-------------DM--------EGLEAAL-----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCH 323 (466)
Q Consensus 276 --~v~~vd~~-------------D~--------e~Le~ai-----~~~~tklV~lesPsNPtG~v~d----l~~I~ela~ 323 (466)
.+..++.. +. +.+++.+ ...++.+|++|......|.+.+ +++|.++|+
T Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~ 253 (457)
T PRK05639 174 MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLD 253 (457)
T ss_pred CCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 12222211 12 2345443 1335899999988766676553 789999999
Q ss_pred hcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHH
Q 012321 324 KKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY 397 (466)
Q Consensus 324 ~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~ 397 (466)
+||+++|+||++.. +.. ......-.||++ ++|.+++. ...|++++++++++.... ........+|..+.
T Consensus 254 ~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG--~pi~av~~~~~i~~~~~~-~~~~T~~g~p~~~a 328 (457)
T PRK05639 254 EHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVASG--MGLSGVIGRKELMDLTSG-SALLTPAANPVISA 328 (457)
T ss_pred HcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcCC--CcceeEEehHHHHhhcCC-CcccCCCcCHHHHH
Confidence 99999999999652 111 122223468888 79999864 235788888888773211 11111234566555
Q ss_pred HHHHhhHHHHH--HHHHHHHHHHHHHHHHHc----CCCcEEEeCCC
Q 012321 398 LIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPG 437 (466)
Q Consensus 398 l~lrgL~tl~~--R~e~~~~na~~La~~L~~----~p~V~~V~~Pg 437 (466)
.++..|+.+.. .+++..+..++|.+.|++ +|.+..|...|
T Consensus 329 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~G 374 (457)
T PRK05639 329 AAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKG 374 (457)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccce
Confidence 55555554432 234444455555555543 66666554443
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-08 Score=107.93 Aligned_cols=228 Identities=12% Similarity=0.157 Sum_probs=137.8
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHH-HHH--------
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRI-FIE-------- 267 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~-~~~-------- 267 (466)
..+|...+|.++|+++.. .+.+.+++||++|+..++..... + ..+||.....|++... .+.
T Consensus 86 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~ 165 (442)
T PRK13360 86 MGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNR 165 (442)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhh
Confidence 357888899999999874 36788899999999988874321 2 3579988888877321 110
Q ss_pred hhcccCCcEEEEeCCC------------------CHHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012321 268 TVLPKMGITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 268 ~~l~~~gi~v~~vd~~------------------D~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela 322 (466)
.........+.+++.. ..+++++.+. ..++.+|++|......|.+.+ +++|.++|
T Consensus 166 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc 245 (442)
T PRK13360 166 KAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREIC 245 (442)
T ss_pred hccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence 0001000111222111 1356777774 234889999998877888887 99999999
Q ss_pred HhcCCEEEEeCCCC-CCC---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-------HHHhCC
Q 012321 323 HKKGAIVCIDGTFA-TPL---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG 389 (466)
Q Consensus 323 ~~~gillIvD~t~a-~~~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~~~G~ 389 (466)
+++|+++|+||++. .+- . ..-.....|++ +++|.+++.. ...|.+++++++++.+..- ......
T Consensus 246 ~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~-~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~ 322 (442)
T PRK13360 246 DKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTNGA-IPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTY 322 (442)
T ss_pred HHcCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeeccccCc-cceEEEEEcHHHHHHhhcCCccccccccCCCC
Confidence 99999999999963 211 1 11122235776 5799998642 2245677888888766421 111111
Q ss_pred CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHH---cCCCcEEEeCCC
Q 012321 390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILE---AHPKVKRVHYPG 437 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~---~~p~V~~V~~Pg 437 (466)
..+|..+..++..|+.+. ..+++..+..+++.+.|+ ++|.|..|+--|
T Consensus 323 ~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~G 375 (442)
T PRK13360 323 SGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLG 375 (442)
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccc
Confidence 235665555555555443 133444555555656555 355555554333
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-08 Score=105.72 Aligned_cols=228 Identities=13% Similarity=0.122 Sum_probs=135.2
Q ss_pred CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHH-HHHhh----c
Q 012321 207 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRI-FIETV----L 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~-~~~~~----l 270 (466)
..++...+|.++|.++.+ .+.+.+++||++|+..++..... +| .+||.....|++... .+... .
T Consensus 83 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 162 (449)
T PRK07481 83 TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF 162 (449)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence 467888899999999873 35678889999999988875321 23 578888888887332 11100 0
Q ss_pred ----cc--CCcEEEEeC------C--CCHHH--------HHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012321 271 ----PK--MGITATVID------P--ADMEG--------LEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL 321 (466)
Q Consensus 271 ----~~--~gi~v~~vd------~--~D~e~--------Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~el 321 (466)
.. .|+.....+ . .|++. +++.|. ++++.+|++|....-.|.+.+ +++|.++
T Consensus 163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l 242 (449)
T PRK07481 163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV 242 (449)
T ss_pred ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence 00 122111000 0 13333 344442 235899999988766676554 8999999
Q ss_pred HHhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-----HHhCCC
Q 012321 322 CHKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGA 390 (466)
Q Consensus 322 a~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-----~~~G~~ 390 (466)
|+++|+++|.||++.. +.. ......-.||++ +.|.+++.- +..|.+++++++++.+.... ...+.+
T Consensus 243 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T 319 (449)
T PRK07481 243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGY-VPLGATMVNARIADAFEANADFGGAIMHGYT 319 (449)
T ss_pred HHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCC-cCceEEEEcHHHHHHHhccCccccccccCCC
Confidence 9999999999999542 111 122223468877 589998641 23577888888887765311 011212
Q ss_pred --chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc----CCCcEEEeCCC
Q 012321 391 --LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPG 437 (466)
Q Consensus 391 --ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~~----~p~V~~V~~Pg 437 (466)
-+|..+..++..|+.+.. .+++..+..++|.+.|++ +|.|..|+.-|
T Consensus 320 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 374 (449)
T PRK07481 320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKG 374 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecc
Confidence 356655555555554432 234444445555544443 56666665444
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-08 Score=115.83 Aligned_cols=230 Identities=15% Similarity=0.179 Sum_probs=138.5
Q ss_pred CCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchH-HHHHh--hc---cc--
Q 012321 205 GRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTR-IFIET--VL---PK-- 272 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~--g~e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~-~~~~~--~l---~~-- 272 (466)
+++.++...+|.++|+++. +.+.+++++||++|+..++... .....+||..+..|++.. ..... .. ..
T Consensus 619 ~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~ 698 (972)
T PRK06149 619 SRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQAL 698 (972)
T ss_pred ccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCcccccccc
Confidence 4566788899999999987 3478889999999999988732 123356777777777632 11100 00 00
Q ss_pred ----CCcEEEEe--------CCCC-----HHHHHHhcc-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012321 273 ----MGITATVI--------DPAD-----MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG 326 (466)
Q Consensus 273 ----~gi~v~~v--------d~~D-----~e~Le~ai~-----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~g 326 (466)
.++..... ...+ .+++++.++ ..++.+|++|......|.+.+ +++|.++|++||
T Consensus 699 ~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g 778 (972)
T PRK06149 699 ETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARG 778 (972)
T ss_pred CCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcC
Confidence 01111100 0011 233333332 234889999988777787777 899999999999
Q ss_pred CEEEEeCCCC-CCCccc------hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHh-CCCchHHHHHH
Q 012321 327 AIVCIDGTFA-TPLNQK------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-GGALNPNAAYL 398 (466)
Q Consensus 327 illIvD~t~a-~~~~~~------pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~-G~~ls~~~A~l 398 (466)
+++|+||++. .+-... -.....||+ +++|.+++. ...|++++++++++.+......+ ....+|..+..
T Consensus 779 ~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~G--~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aa 854 (972)
T PRK06149 779 GVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGNG--HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRI 854 (972)
T ss_pred CEEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccCC--eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 9999999963 211111 112236887 579999864 35688899999888775311111 12356777766
Q ss_pred HHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCcEEEeCCCC
Q 012321 399 IIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGL 438 (466)
Q Consensus 399 ~lrgL~tl~~--R~e~~~~na~~La~~L~----~~p~V~~V~~PgL 438 (466)
++..|+.+.. ..++..+...+|.+.|+ ++|.|..|+--|+
T Consensus 855 ala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl 900 (972)
T PRK06149 855 GMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGL 900 (972)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecce
Confidence 6666665532 12233333344444443 4676766654443
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=108.78 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhhCC-C-cEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccch-HHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGA-E-STVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~-e-~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t-~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
-+.|-.+|+.+.|+ + ++++..+-+.-++.++.+.+ .+|+.||+++..-.++ +...+.+....++..+..-.+.++
T Consensus 78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~ 157 (407)
T COG3844 78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPR 157 (407)
T ss_pred hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChH
Confidence 46778889999997 3 44444444455666666654 4588888877544333 333333344444432222234678
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccccccccccCc
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDV 365 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~lgG~gdv 365 (466)
+++++++++ +.+|++.+.+--||...|+.+|.+++|++|++++-|-+++.+.. .+.-..|+|+-+.+.+||++|..+.
T Consensus 158 ~~~~~~~dd-~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGa 236 (407)
T COG3844 158 ALEEAITDD-VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGA 236 (407)
T ss_pred HHHHhhccc-eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCC
Confidence 999999986 99999999998899999999999999999999999999877644 4444669999999999999877666
Q ss_pred eEEEEEeC
Q 012321 366 LAGSISGS 373 (466)
Q Consensus 366 ~gG~vvg~ 373 (466)
.+|+.+.+
T Consensus 237 pa~l~v~~ 244 (407)
T COG3844 237 PAGLFVAP 244 (407)
T ss_pred ceeEEecc
Confidence 67766654
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-08 Score=108.42 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=108.1
Q ss_pred CCchhHHHHHHHHHhhhC----CC-cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhh-----ccc
Q 012321 207 YGNPTTVVVEEKMSALEG----AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-----LPK 272 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g----~e-~~v~~-~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~-----l~~ 272 (466)
+.++...+|.++|+++.. .+ ...++ +||++|+..++.... ....+||.....|++.. ..+... -..
T Consensus 79 ~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 158 (425)
T PRK09264 79 MHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQG 158 (425)
T ss_pred cCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccC
Confidence 356777888888888642 23 34454 699999998887542 23467888888887743 222110 011
Q ss_pred CCc---EEEEeCC--------CCHHHHHHhccC-----CCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEe
Q 012321 273 MGI---TATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCID 332 (466)
Q Consensus 273 ~gi---~v~~vd~--------~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~----dl~~I~ela~~~gillIvD 332 (466)
++. .+..++. .|++++++.+++ .++.+|++|......|.+. .+++|.++|++||+++|+|
T Consensus 159 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D 238 (425)
T PRK09264 159 AGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVD 238 (425)
T ss_pred CCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe
Confidence 111 2333332 367788888752 2478999998887677644 4899999999999999999
Q ss_pred CCCCCC------CccchhccCCcEEEeccccccccccCceEEEEEeChHH
Q 012321 333 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL 376 (466)
Q Consensus 333 ~t~a~~------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el 376 (466)
|++... +.........|++ +++|.+++.| ...|++++++++
T Consensus 239 EV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l~~~G-~pigav~~~~~i 285 (425)
T PRK09264 239 DIQAGCGRTGTFFSFERAGITPDIV--TLSKSISGYG-LPMALVLIKPEL 285 (425)
T ss_pred chhhCCccccHHHHHhhcCCCCCEE--EeccccCCCc-cceEEEEEchhh
Confidence 997531 1112223346766 4579998755 456788887775
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-08 Score=106.15 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=140.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchH-HHHHhhc-c---c
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETVL-P---K 272 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~-~~~~~~l-~---~ 272 (466)
+....+.++...+|.++|.++.. .+.+.+++||++|+..++.... ....+||.....|++.. ..+...- . .
T Consensus 87 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~ 166 (451)
T PRK06062 87 TVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWP 166 (451)
T ss_pred CcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCccccc
Confidence 33345678888999999999874 3678888999999999887532 23467888888887743 2221100 0 0
Q ss_pred -----CCcEEEEeC---------CCC-------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012321 273 -----MGITATVID---------PAD-------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (466)
Q Consensus 273 -----~gi~v~~vd---------~~D-------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I~ela~~ 324 (466)
.++.....+ ..| ++.+++.++. +++.+|++|......|.+.+ +++|.++|++
T Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~ 246 (451)
T PRK06062 167 NDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDR 246 (451)
T ss_pred CCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 122111000 012 5667777742 34889999988777788877 9999999999
Q ss_pred cCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC--CCchHHHH
Q 012321 325 KGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAA 396 (466)
Q Consensus 325 ~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G--~~ls~~~A 396 (466)
+|+++|+||++... .. ..-.....|+++ +.|.+++.- +..|.+++++++++.+.......+ ...+|..+
T Consensus 247 ~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t--~gK~lggG~-~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~ 323 (451)
T PRK06062 247 HGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT--FAKGVNSGY-VPLGGVAISEAIAATFADRPYPGGLTYSGHPLAC 323 (451)
T ss_pred cCCEEEeeccccCCCcCcHHHHHHhcCCCCCeee--echhhhcCC-cCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHH
Confidence 99999999996531 11 121222357664 789998741 124667777888877653111111 12346666
Q ss_pred HHHHHhhHHHHH--HHHHHHHHH-HHHHHHH----HcCCCcEEEeCCCC
Q 012321 397 YLIIRGMKTLHL--RVQQQNSTA-LRMAKIL----EAHPKVKRVHYPGL 438 (466)
Q Consensus 397 ~l~lrgL~tl~~--R~e~~~~na-~~La~~L----~~~p~V~~V~~PgL 438 (466)
..++..|+.+.. .+++..+.. ++|.+.| +++|.|..|..-|+
T Consensus 324 Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl 372 (451)
T PRK06062 324 AAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGV 372 (451)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEecccc
Confidence 666666655532 223333332 2333333 34676666665554
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-09 Score=117.76 Aligned_cols=159 Identities=22% Similarity=0.309 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-c--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-V--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~al-l--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
.-.++..+++|.|.+ ++-++..++++..+++++. . +++++|++++.+|+.+...++..++..|+++..+| .+
T Consensus 111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~ 187 (939)
T TIGR00461 111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CS 187 (939)
T ss_pred HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HH
Confidence 445688899999986 5577778887666666664 2 23489999999999998888777888899988774 46
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-CCCCccchhccCCcEEEecccccc-----c
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFI-----G 360 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-a~~~~~~pl~~gaDivv~S~sK~l-----g 360 (466)
+|++.+ + +..|++.+|+ -+|.+.|+++|++++|++|++++++.-. +..++..|-++|+||++.+..++- |
T Consensus 188 ~l~~~~--~-~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~G 263 (939)
T TIGR00461 188 DIKKAV--D-VFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYG 263 (939)
T ss_pred HHhhcC--C-EEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCC
Confidence 677666 2 7899998887 5899999999999999999999996653 334567889999999988777653 3
Q ss_pred cccCceEEEEEeChHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQI 380 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l 380 (466)
||+ +|++..++++..++
T Consensus 264 GP~---aG~~a~~~~l~r~l 280 (939)
T TIGR00461 264 GPH---AAFFAVKDEYNRKM 280 (939)
T ss_pred CCc---eeeeeecHhhHhhC
Confidence 554 78888877766553
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-08 Score=104.46 Aligned_cols=227 Identities=14% Similarity=0.171 Sum_probs=135.5
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhccc----
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPK---- 272 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~~---- 272 (466)
..++...+|.++|.++.. .+.+.+++||++|+..++..... + ..+||.....|++.......+-..
T Consensus 92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~ 171 (466)
T PRK07036 92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADR 171 (466)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccc
Confidence 467788889999998864 35677889999999988875321 2 257888888887743221111000
Q ss_pred --CC---cEEEEeCCCC-----------------HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012321 273 --MG---ITATVIDPAD-----------------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH 323 (466)
Q Consensus 273 --~g---i~v~~vd~~D-----------------~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela~ 323 (466)
++ -.+..++..+ .+.+++.+. .+++.+|++|......|.+.+ +++|.++|+
T Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~ 251 (466)
T PRK07036 172 TEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR 251 (466)
T ss_pred ccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence 00 0112221110 234455453 235899999988776777765 899999999
Q ss_pred hcCCEEEEeCCCCCC-----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH---H--HHhC--C
Q 012321 324 KKGAIVCIDGTFATP-----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H--HVLG--G 389 (466)
Q Consensus 324 ~~gillIvD~t~a~~-----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~---~--~~~G--~ 389 (466)
+||+++|+||++... ++ +.......||++ +.|.+++.- +..|.+++++++++.+... . ...+ .
T Consensus 252 ~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~ 328 (466)
T PRK07036 252 RYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTSGY-QPLGAVIISERLLDVISGPNAKGNVFTHGFTY 328 (466)
T ss_pred HcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--EccccccCc-cccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence 999999999996321 11 112223467775 689998641 1257777888888876531 0 0111 1
Q ss_pred CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCcEEEeCC
Q 012321 390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYP 436 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~---~~p~V~~V~~P 436 (466)
..+|..+..++..|+.+.. .+++..+..++|.+.|+ ++|.|..|.-.
T Consensus 329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~ 380 (466)
T PRK07036 329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGD 380 (466)
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 2356666666666665532 34455555555555554 34555555433
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=106.37 Aligned_cols=215 Identities=12% Similarity=0.164 Sum_probs=136.3
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHH-HHh-hcc---------
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IET-VLP--------- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~-~~~-~l~--------- 271 (466)
..++...+|.++|.++.+. +.+.+++||++|+..++.... ....+|+.....|++.... +.. .+.
T Consensus 90 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~ 169 (433)
T PRK00615 90 LTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTH 169 (433)
T ss_pred CCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCC
Confidence 4567788888888888754 478888999999998887543 2235788888778773211 100 000
Q ss_pred cC-----CcEEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC-
Q 012321 272 KM-----GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL- 339 (466)
Q Consensus 272 ~~-----gi~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~- 339 (466)
.. .-....++..|++++++.+.. .++.+|++|......|.+.+ +++|.++|++||+++|+||++. ++
T Consensus 170 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R 248 (433)
T PRK00615 170 LVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFR 248 (433)
T ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-ccc
Confidence 00 001122344578888888742 24789999988777787776 5699999999999999999973 22
Q ss_pred ---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhCCC--chHHHHHHHHHhhHHHH--HH
Q 012321 340 ---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGA--LNPNAAYLIIRGMKTLH--LR 409 (466)
Q Consensus 340 ---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G~~--ls~~~A~l~lrgL~tl~--~R 409 (466)
. ..-.....|+++ ++|.+++. ..+|++++++++++.+..... ..+.+ .+|..+..++..|+.+. ..
T Consensus 249 ~G~~ga~~~~gv~PDi~~--~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~ 324 (433)
T PRK00615 249 VAQGGAAAIYHVKPDITV--YGKILGGG--LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF 324 (433)
T ss_pred ccHhHHHHhcCCCCCeEE--EcccccCC--cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH
Confidence 1 111122357765 79999864 347899999999888753211 12222 36666666555555443 13
Q ss_pred HHHHHHHHHHHHHHHHc
Q 012321 410 VQQQNSTALRMAKILEA 426 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~ 426 (466)
+++..++.+++.+.|++
T Consensus 325 ~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 325 YTQLSTLEQNFLSPIEE 341 (433)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555666444443
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-09 Score=109.16 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=133.6
Q ss_pred hhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCc-EEEEeC--
Q 012321 210 PTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGI-TATVID-- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~--~v~~~SG~aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~gi-~v~~vd-- 281 (466)
....++++.|.++++.+ . .++.+||+.++.+++.+++ ++||+|++.. .|+. ++....++.+|+ +++.++
T Consensus 39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~--r~~~eia~~~g~~~v~~l~~~ 115 (374)
T TIGR01365 39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK--GWVTDVTKQLKLPDVRVLEAE 115 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH--HHHHHHHHhcCCCCcEEEcCC
Confidence 44566688888888852 2 3446888999999999999 5899888754 4443 233355666777 355554
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccc
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 358 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~ 358 (466)
..|+++++. ++ . |++.+--..||...|+++|.+.. +++++|||.+-+.+...-..+ ++|+++.|..|.
T Consensus 116 ~g~~~~~~~ve~--~~---~-v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK~ 186 (374)
T TIGR01365 116 YGKLPDLKKVDF--KN---D-VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-KLDVVTFSWQKV 186 (374)
T ss_pred CCCCCCHHHcCC--CC---C-EEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh-HCcEEEEechhc
Confidence 346777762 22 2 33434444579999997666332 589999999854432211222 499999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHH------H-------------Hh-CC---CchHHHHHHHHHhhH------HHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLH------H-------------VL-GG---ALNPNAAYLIIRGMK------TLHLR 409 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~------~-------------~~-G~---~ls~~~A~l~lrgL~------tl~~R 409 (466)
|+++++ .++++.+++.++++.... . .. +. +.+-+.-+.+++.++ .++.|
T Consensus 187 L~~ppG--ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~ 264 (374)
T TIGR01365 187 LGGEGA--HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPL 264 (374)
T ss_pred cCCCCc--eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHH
Confidence 999983 478888888776655210 0 01 11 112222333333332 37788
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 012321 410 VQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~p 428 (466)
.++|.++++.+.+++++.+
T Consensus 265 ~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 265 IARADDNLAVLEAFVAKNN 283 (374)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 9999999999999998876
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-08 Score=105.11 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=132.0
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhcc-----
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP----- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~----- 271 (466)
..++...++.++|+++.+. +.+.++.||++|+..++..... + ..+||.....|.+.......+..
T Consensus 85 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~ 164 (427)
T TIGR00508 85 FTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSM 164 (427)
T ss_pred cCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccc
Confidence 4567778888889888754 5788889999999888875431 2 35788888888874322211100
Q ss_pred --cCC--c-EEEEeC-----------CCCHHHHHHhccC--CCceEEEEeCC-CCCCccc----ccHHHHHHHHHhcCCE
Q 012321 272 --KMG--I-TATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRC----VDVKLVSDLCHKKGAI 328 (466)
Q Consensus 272 --~~g--i-~v~~vd-----------~~D~e~Le~ai~~--~~tklV~lesP-sNPtG~v----~dl~~I~ela~~~gil 328 (466)
.++ . .+..++ ..|.+++++.+.. .++.+|++|.. .+-.|.. ..+++|.++|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~l 244 (427)
T TIGR00508 165 HSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDIL 244 (427)
T ss_pred cccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 000 0 011111 1145667777642 24789999975 4444432 3589999999999999
Q ss_pred EEEeCCCCCCCc-------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH---HHhC--CCchHHHH
Q 012321 329 VCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLG--GALNPNAA 396 (466)
Q Consensus 329 lIvD~t~a~~~~-------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~---~~~G--~~ls~~~A 396 (466)
+|+||++. ++. ..-.....||++ ++|.++|. -...+.+++++++++.++... ...+ ...+|..+
T Consensus 245 lI~DEv~t-G~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG-~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~ 320 (427)
T TIGR00508 245 LIADEIAT-GFGRTGKLFACEHAGVVPDILC--VGKALTGG-YMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLAC 320 (427)
T ss_pred EEEecccc-CCCcCCccchhhhcCCCCCEEE--echhhhcC-cccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHH
Confidence 99999963 221 111223467776 79999653 234678888889888876321 0111 12356655
Q ss_pred HHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012321 397 YLIIRGMKTLH--LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 397 ~l~lrgL~tl~--~R~e~~~~na~~La~~L~~~ 427 (466)
..++..++.+. ...++..++..+|.+.|++.
T Consensus 321 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l 353 (427)
T TIGR00508 321 AVAEASLAILLEGEWQKQVSAIENQLKRELSPL 353 (427)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 55555554432 23456666677777766653
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-08 Score=105.03 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=133.1
Q ss_pred CCchhHHHHHHHHHhhhCC-------CcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhc-
Q 012321 207 YGNPTTVVVEEKMSALEGA-------ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVL- 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~-------e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l- 270 (466)
+.++...+|.++|.++... +.+.+.+||++|+..++..... + ..+||.....|++........-
T Consensus 104 ~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~ 183 (472)
T PRK08742 104 FTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGD 183 (472)
T ss_pred cCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccC
Confidence 4577788999999987642 4678889999999988875421 2 3678888888877432111110
Q ss_pred --------ccCCcEEEEeCCC-----------------CHHHHHHhcc--CCCceEEEEeC-CCCCCccccc----HHHH
Q 012321 271 --------PKMGITATVIDPA-----------------DMEGLEAALN--NNNVSLFFTES-PTNPFLRCVD----VKLV 318 (466)
Q Consensus 271 --------~~~gi~v~~vd~~-----------------D~e~Le~ai~--~~~tklV~les-PsNPtG~v~d----l~~I 318 (466)
...-..+.+++.. +++.+++.++ ..++.+|++|. ..+-.|.+.+ +++|
T Consensus 184 ~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l 263 (472)
T PRK08742 184 IPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRA 263 (472)
T ss_pred CcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence 0000011122211 2456666664 23589999987 4555565543 7899
Q ss_pred HHHHHhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH----HHhC
Q 012321 319 SDLCHKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLG 388 (466)
Q Consensus 319 ~ela~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~----~~~G 388 (466)
.++|+++|+++|.||++.. +.+ ......-.||++ +.|.++|.- ...|.+++++++++.+.... ...+
T Consensus 264 r~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~gG~-~Plaav~~~~ei~~~~~~~~~~~~~~h~ 340 (472)
T PRK08742 264 RELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLTGGF-LPLSAVLATQQLYDAFLDDSRERAFLHS 340 (472)
T ss_pred HHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEE--EcccccCCC-CCcceeeccHHHHHHhhccCccCccCcC
Confidence 9999999999999999542 211 222223468887 489998641 13577778888887664210 0112
Q ss_pred CC--chHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 389 GA--LNPNAAYLIIRGMKTLHL-----RVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 389 ~~--ls~~~A~l~lrgL~tl~~-----R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
.+ -+|..+..++..|+.+.. +.++.-+....+.+.++++|.|..|+.-||
T Consensus 341 ~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl 397 (472)
T PRK08742 341 HSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGM 397 (472)
T ss_pred CCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccce
Confidence 22 356655555555544322 222222222233334455676666665543
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-08 Score=105.37 Aligned_cols=214 Identities=16% Similarity=0.203 Sum_probs=135.7
Q ss_pred CchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHH-hh---c-----c-cCC
Q 012321 208 GNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE-TV---L-----P-KMG 274 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~-~~---l-----~-~~g 274 (466)
.++...+|.++|.+... .+.+.+++||++|+..++.... ...++||.....|++....+. .. . . ..+
T Consensus 137 ~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g 216 (474)
T PLN02482 137 PCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG 216 (474)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence 45667788888888764 4778889999999998887542 234678888888888432111 00 0 0 112
Q ss_pred c------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc--
Q 012321 275 I------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-- 340 (466)
Q Consensus 275 i------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~-- 340 (466)
+ .+..++..|++.+++.++. .++.+|++|......|.+.+ +++|.++|++||+++|+||++. ++.
T Consensus 217 ~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g 295 (474)
T PLN02482 217 VPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIA 295 (474)
T ss_pred CCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecC
Confidence 2 2233455688999988853 24889999988777787765 6789999999999999999973 221
Q ss_pred ----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-HHhCCC--chHHHHHHHHHhhHHHH--HHHH
Q 012321 341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGA--LNPNAAYLIIRGMKTLH--LRVQ 411 (466)
Q Consensus 341 ----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~~~G~~--ls~~~A~l~lrgL~tl~--~R~e 411 (466)
+.......|++ ++.|.++|. ...|.+++++++++.+.... ...+++ .+|..+..++..|+.+. ...+
T Consensus 296 ~~ga~~~~gv~PDi~--t~gK~lggG--~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~ 371 (474)
T PLN02482 296 YGGAQEYFGITPDLT--TLGKVIGGG--LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYE 371 (474)
T ss_pred cchHhHHhCCCCCEE--EecchhhCC--CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHH
Confidence 11122235775 579999864 23566689999988775211 112222 34554444444444442 2445
Q ss_pred HHHHHHHHHHHHHHc
Q 012321 412 QQNSTALRMAKILEA 426 (466)
Q Consensus 412 ~~~~na~~La~~L~~ 426 (466)
+..+..++|.+.|++
T Consensus 372 ~~~~~g~~l~~~L~~ 386 (474)
T PLN02482 372 YLDKITKKLIQGILE 386 (474)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566666665544
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-08 Score=102.99 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=130.6
Q ss_pred CCCchhHHHHHHHHHhhhCCC-----cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc----c--
Q 012321 206 RYGNPTTVVVEEKMSALEGAE-----STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----P-- 271 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~e-----~~v~~-~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l----~-- 271 (466)
.+.+|...+|.++|.++...+ ..+++ +||++|+..++.... ....+||.....|++.......+- .
T Consensus 102 ~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~ 181 (464)
T PRK06938 102 DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKK 181 (464)
T ss_pred ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccc
Confidence 356788888888888876422 34455 599999999887542 234678888888877432211110 0
Q ss_pred cCC---cEEEEeCCC-----------------CHHHHHHhccC-----CCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012321 272 KMG---ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 272 ~~g---i~v~~vd~~-----------------D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d----l~~I~ela 322 (466)
.++ -.+.+++.. +.+.+++.+++ .++.+|++|....-.|.+.+ +++|.++|
T Consensus 182 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc 261 (464)
T PRK06938 182 PLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRIT 261 (464)
T ss_pred cCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence 000 012222211 25667777753 14899999887655566543 78999999
Q ss_pred HhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCC--CchHH
Q 012321 323 HKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPN 394 (466)
Q Consensus 323 ~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~--~ls~~ 394 (466)
+++|+++|.||++.. +.+ ......-.||++ +.|.++|. ...|.+++++++ +.+... ..+. .-+|.
T Consensus 262 ~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglggG--~PlsAv~~~~~~-~~~~~~--~~~~T~~gnpl 334 (464)
T PRK06938 262 EEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIGGS--LPLAVVVYREWL-DTWQPG--AHAGTFRGNQM 334 (464)
T ss_pred HHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eeccccCC--CceEEEeehhHh-hccCCC--CCCCCCCcCHH
Confidence 999999999999542 211 222223468887 58999864 446777777664 433211 1121 23556
Q ss_pred HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCcEEEeCCCC
Q 012321 395 AAYLIIRGMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRVHYPGL 438 (466)
Q Consensus 395 ~A~l~lrgL~tl~~--R~e~~~~na~~La~~L----~~~p~V~~V~~PgL 438 (466)
.+..++..|+.+.. .+++..+..++|.+.| +++|.|..|+-.||
T Consensus 335 a~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl 384 (464)
T PRK06938 335 AMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGL 384 (464)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence 55555555554432 1233333334444433 34676666665543
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-08 Score=104.64 Aligned_cols=228 Identities=15% Similarity=0.150 Sum_probs=135.7
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhcc-----
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP----- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~----- 271 (466)
+.++...+|.++|+++... +.+.+++||++|+..++..... + ..+||.....|++.......+-.
T Consensus 96 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~ 175 (460)
T PRK06916 96 LANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFH 175 (460)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccc
Confidence 3567788999999998753 5788889999999988875432 3 36788888888874321111100
Q ss_pred -cCC---cEEEEeCC-----------------CCHHHHHHhcc--CCCceEEEEeC-CCCCCcccc-c---HHHHHHHHH
Q 012321 272 -KMG---ITATVIDP-----------------ADMEGLEAALN--NNNVSLFFTES-PTNPFLRCV-D---VKLVSDLCH 323 (466)
Q Consensus 272 -~~g---i~v~~vd~-----------------~D~e~Le~ai~--~~~tklV~les-PsNPtG~v~-d---l~~I~ela~ 323 (466)
.++ ..+..++. .+++++++.++ .+++.+|++|. +..-.|.+. + +++|.++|+
T Consensus 176 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~ 255 (460)
T PRK06916 176 QVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCT 255 (460)
T ss_pred cccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHH
Confidence 000 01111110 12456666664 23589999998 465556554 3 789999999
Q ss_pred hcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH----HH-HhCC--C
Q 012321 324 KKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HH-VLGG--A 390 (466)
Q Consensus 324 ~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~----~~-~~G~--~ 390 (466)
++|+++|+||++.. +.. ......-.||++ +.|.++|.- +..|.+++++++++.+..- .. ..+. .
T Consensus 256 ~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~-~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~ 332 (460)
T PRK06916 256 KYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGGY-LPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYT 332 (460)
T ss_pred HcCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcCc-cccceeeecHHHHHHhhccccccCccccCCCCC
Confidence 99999999999632 111 122223468875 689998642 2367788888888765421 00 1111 1
Q ss_pred chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCcEEEeCCC
Q 012321 391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPG 437 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~~---~p~V~~V~~Pg 437 (466)
.+|..+..++..|+.+.. .+++..+..+++.+.|++ +|.|..|..-|
T Consensus 333 gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~G 384 (460)
T PRK06916 333 GNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLG 384 (460)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCC
Confidence 356655555555554432 344555555555555554 45555555444
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=100.52 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=134.7
Q ss_pred CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchHHHHHhhcc----
Q 012321 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP---- 271 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~~~~~~~l~---- 271 (466)
.+.++...+|.++|+++... +.+.+++||++|+..++..... + ..+|+.....|++........-.
T Consensus 70 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~ 149 (447)
T PRK06917 70 QFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLR 149 (447)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence 35678888999999998754 4677789999999998875421 2 36788888888774322111100
Q ss_pred --cC-----CcEEEEeC--------C-------CCHHHHHHhccC---CCceEEEEeCCCCC-Cccccc----HHHHHHH
Q 012321 272 --KM-----GITATVID--------P-------ADMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKLVSDL 321 (466)
Q Consensus 272 --~~-----gi~v~~vd--------~-------~D~e~Le~ai~~---~~tklV~lesPsNP-tG~v~d----l~~I~el 321 (466)
.+ ++.....+ . .+++.+++.++. +++.+|++|....- -|.+.+ +++|.++
T Consensus 150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~l 229 (447)
T PRK06917 150 RQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEI 229 (447)
T ss_pred cccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHH
Confidence 00 11100000 0 123566666642 24899999976543 344442 7899999
Q ss_pred HHhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-H-HhCC--Cc
Q 012321 322 CHKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H-VLGG--AL 391 (466)
Q Consensus 322 a~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~-~~G~--~l 391 (466)
|+++|+++|+||++.. +.. ......-.|+++ ++|.+++.- ...|++++++++++.+.... . ..+. ..
T Consensus 230 c~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~G~-~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~g 306 (447)
T PRK06917 230 CDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGAGY-TPIAATVVSDRVMEPILRGSRSIMSGHTLSA 306 (447)
T ss_pred HHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhccCC-cceEEEEEcHHHHHHHhccCcccccccCCCC
Confidence 9999999999999642 111 122223368765 689998641 13577888888887765311 1 1121 23
Q ss_pred hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc----CCCcEEEeCCC
Q 012321 392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPG 437 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~~----~p~V~~V~~Pg 437 (466)
+|..+..++..|+.+.. .+++..+..++|.+.|++ +|.|..|.--|
T Consensus 307 npl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 358 (447)
T PRK06917 307 NPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKG 358 (447)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecc
Confidence 56666555555555432 334444455555554443 56666555443
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=100.88 Aligned_cols=229 Identities=14% Similarity=0.184 Sum_probs=135.2
Q ss_pred CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCccchH-HHHHhh-cc--
Q 012321 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTR-IFIETV-LP-- 271 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------p-GD~VLv~~~~y~~t~-~~~~~~-l~-- 271 (466)
.+.++...+|.++|+++.. .+.+.+++||++|+..++..... + ..+||.....|++.. ..+... ..
T Consensus 86 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 165 (466)
T PRK07030 86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF 165 (466)
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence 3557788889999998764 36788889999999988875421 2 357888888887732 211100 00
Q ss_pred --cCC---cEEEEeCCC-----------------CHHHHHHhccC--CCceEEEEeC-CCCCCccccc----HHHHHHHH
Q 012321 272 --KMG---ITATVIDPA-----------------DMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 272 --~~g---i~v~~vd~~-----------------D~e~Le~ai~~--~~tklV~les-PsNPtG~v~d----l~~I~ela 322 (466)
.++ -.+..++.. +++.+++.+.. +++.+|++|. ...-.|.+.+ +++|.++|
T Consensus 166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc 245 (466)
T PRK07030 166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC 245 (466)
T ss_pred cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence 000 011112111 24556777742 3489999987 4544565543 78999999
Q ss_pred HhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-----HHHhCC--
Q 012321 323 HKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGG-- 389 (466)
Q Consensus 323 ~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-----~~~~G~-- 389 (466)
+++|+++|+||++.. +.+ ......-.||++. .|.++|. -...|.+++++++.+.+..- ....+.
T Consensus 246 ~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~ 322 (466)
T PRK07030 246 DRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCL--SKALTGG-YLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY 322 (466)
T ss_pred HHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEee--ehhccCC-cccceEEEecHHHHHHHhcccccccccccCCCC
Confidence 999999999999532 211 2222334688874 8999864 12367788899988776421 001122
Q ss_pred CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCcEEEeCCC
Q 012321 390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYPG 437 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~---~~p~V~~V~~Pg 437 (466)
..+|..+..++..|+.+.. .+++..+..++|.+.|+ ++|.|..|..-|
T Consensus 323 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~G 375 (466)
T PRK07030 323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTG 375 (466)
T ss_pred CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEece
Confidence 2356666655555555432 23344444444444443 356665555444
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.6e-08 Score=101.08 Aligned_cols=231 Identities=16% Similarity=0.160 Sum_probs=143.5
Q ss_pred cCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCccchH-H-------
Q 012321 204 YGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTR-I------- 264 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all-------~pG-D~VLv~~~~y~~t~-~------- 264 (466)
++-...| ..+|.++|+++.. .+.+.+..||++|+..++...+ +|. .++|.-...|++.. .
T Consensus 82 ~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~ 160 (449)
T COG0161 82 GGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGP 160 (449)
T ss_pred cccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCc
Confidence 3444567 8999999999987 3677888899999988886442 232 34787788887621 1
Q ss_pred --HHHhhcccCCcEEEEeCC-----------------CCHHHHHHhccC---CCceEEEEeCCCCC-Cccccc----HHH
Q 012321 265 --FIETVLPKMGITATVIDP-----------------ADMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKL 317 (466)
Q Consensus 265 --~~~~~l~~~gi~v~~vd~-----------------~D~e~Le~ai~~---~~tklV~lesPsNP-tG~v~d----l~~ 317 (466)
..+......-..+..++. ...++|++.|.. +++.++++|....- .|.+.+ +++
T Consensus 161 ~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~ 240 (449)
T COG0161 161 VALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKR 240 (449)
T ss_pred hhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHH
Confidence 111111111011111111 114566666654 45889999988766 566654 899
Q ss_pred HHHHHHhcCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-HH----H
Q 012321 318 VSDLCHKKGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HH----V 386 (466)
Q Consensus 318 I~ela~~~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-~~----~ 386 (466)
+.++|++||++||.||+... +-+ ..-...-.||++ +.|.+.+.- +..|.++.++++.+.+..- .. .
T Consensus 241 vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY-~Pl~a~l~~~~I~~~~~~~~~~~f~HG 317 (449)
T COG0161 241 VREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGY-LPLSAVLTSDRIYEAFSDGDAGAFMHG 317 (449)
T ss_pred HHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccc-hhhHhHhhhHHHHHHHhcccCCeeccC
Confidence 99999999999999998422 211 111122357776 679998765 3345566777787776643 11 1
Q ss_pred hCCCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCcEEEeCCCC
Q 012321 387 LGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGL 438 (466)
Q Consensus 387 ~G~~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~----~~p~V~~V~~PgL 438 (466)
...+-+|..|..++..|+-++. .+++..+...++.+.|+ ++|.|..|+--|+
T Consensus 318 ~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gl 375 (449)
T COG0161 318 HTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGL 375 (449)
T ss_pred CccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccce
Confidence 1234578888888877776652 34555566666666555 4567777765554
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-08 Score=100.63 Aligned_cols=223 Identities=18% Similarity=0.210 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccc-hHHHHHhhc---c------cCC
Q 012321 210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETVL---P------KMG 274 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~-t~~~~~~~l---~------~~g 274 (466)
+...++.++|.++... ..+++.+||++|+.+++.... ..+..||.....|++ |...+...- . .+.
T Consensus 99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~ 178 (447)
T COG0160 99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLP 178 (447)
T ss_pred hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCC
Confidence 6677888888887653 568888999999999987532 334678888877776 333332111 1 111
Q ss_pred cEEEEeCCC-----------------CHHHHHHhccC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012321 275 ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI 328 (466)
Q Consensus 275 i~v~~vd~~-----------------D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gil 328 (466)
-.+..++.. ..+.+++.+.. .++.+|++|....-.|.+.+ ++++.++|++||++
T Consensus 179 ~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gil 258 (447)
T COG0160 179 PGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGIL 258 (447)
T ss_pred CCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 113333211 12334543422 24889999999988888875 78999999999999
Q ss_pred EEEeCCCCC----CCccchhccC--CcEEEeccccccccccCceEEEEEeChHHHHHHHH-HHHHhCCCchHHHHHHHHH
Q 012321 329 VCIDGTFAT----PLNQKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LHHVLGGALNPNAAYLIIR 401 (466)
Q Consensus 329 lIvD~t~a~----~~~~~pl~~g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~-~~~~~G~~ls~~~A~l~lr 401 (466)
+|+||++.. +-+...-.+| .||++ ++|.+++ | ...|.+++++++.+.... ....+++ +|..+..++.
T Consensus 259 lI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G-~Pl~avv~r~ei~~~~~g~~~~Tf~G--Npva~Aaa~A 332 (447)
T COG0160 259 LIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-G-LPLSAVVGRAEIMDWPPGGHGGTFGG--NPVACAAALA 332 (447)
T ss_pred EEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-C-CceeEEeccHHhcccCCcccCCCCCc--CHHHHHHHHH
Confidence 999999753 2222222233 68876 6799998 3 467888999988772221 1222333 4555555554
Q ss_pred hhHHHHH--HHHHHHHHHHHHHHHH----HcCCCcEEEeCCCC
Q 012321 402 GMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRVHYPGL 438 (466)
Q Consensus 402 gL~tl~~--R~e~~~~na~~La~~L----~~~p~V~~V~~PgL 438 (466)
-|+.++. .+++..+.-++|.+.| +++|.|..|+--||
T Consensus 333 vL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Gl 375 (447)
T COG0160 333 VLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGL 375 (447)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccce
Confidence 4554332 2333333333344433 34677766665554
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=100.53 Aligned_cols=229 Identities=16% Similarity=0.220 Sum_probs=134.8
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHH-HHHhh----c-
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRI-FIETV----L- 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~-~~~~~----l- 270 (466)
+.++....|.++|.++.. .+.+.+++||++|+..++..... +| .+||.....|++... .+... .
T Consensus 70 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~ 149 (443)
T PRK07483 70 FTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRR 149 (443)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccc
Confidence 467888899999999864 36788889999999988874321 23 468888888877421 11100 0
Q ss_pred ccCC---cEEEEeCC----CC--------------HHHHHHhcc---CCCceEEEEeCCCC-CCccccc----HHHHHHH
Q 012321 271 PKMG---ITATVIDP----AD--------------MEGLEAALN---NNNVSLFFTESPTN-PFLRCVD----VKLVSDL 321 (466)
Q Consensus 271 ~~~g---i~v~~vd~----~D--------------~e~Le~ai~---~~~tklV~lesPsN-PtG~v~d----l~~I~el 321 (466)
..++ ..+..++. .+ ++++++.+. .+++.+|++|.... -.|.+.+ +++|.++
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~l 229 (443)
T PRK07483 150 EPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREV 229 (443)
T ss_pred cccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHH
Confidence 0010 01112211 01 256666553 23488999998763 2354443 8899999
Q ss_pred HHhcCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH--HHhCC--Cc
Q 012321 322 CHKKGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGG--AL 391 (466)
Q Consensus 322 a~~~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~~~G~--~l 391 (466)
|++||+++|+||++... .+ ..-.....||++ +.|.+++. -...|.+++++++.+.+.... ...+. .-
T Consensus 230 c~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~g 306 (443)
T PRK07483 230 CDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGAG-YQPIGAVLASDRIYDAIADGSGFFQHGHTYLG 306 (443)
T ss_pred HHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhccC-ccccEEEEEcHHHHHHHhcCCCccccCCCCCC
Confidence 99999999999995421 11 122233468877 58999864 113577788888887765311 01121 23
Q ss_pred hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCcEEEeCCCC
Q 012321 392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRVHYPGL 438 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L----~~~p~V~~V~~PgL 438 (466)
+|..+..++..|+.+.. .+++..+..++|.+.| +++|.|..|+--||
T Consensus 307 npl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Gl 359 (443)
T PRK07483 307 HATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGL 359 (443)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeeccc
Confidence 56655555555554432 2344444444444444 44676766665553
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-07 Score=101.20 Aligned_cols=220 Identities=14% Similarity=0.062 Sum_probs=140.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc---------C----------------------
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP---------A---------------------- 248 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~---------p---------------------- 248 (466)
+..+......-+++-++++++.|- ...+++++|+.|+..++..... .
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~ 194 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEI 194 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccc
Confidence 344433333444555667778875 3578899999887766543211 0
Q ss_pred ---------------------C------CEEEEcCCCccchHHHHHhhcccCCc---EEEEeC-----CCCHHHHHHhcc
Q 012321 249 ---------------------G------GHIVTTTDCYRKTRIFIETVLPKMGI---TATVID-----PADMEGLEAALN 293 (466)
Q Consensus 249 ---------------------G------D~VLv~~~~y~~t~~~~~~~l~~~gi---~v~~vd-----~~D~e~Le~ai~ 293 (466)
| ..++++...|.+..... ..+|+ .+..++ ..|+++|++.|+
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa----~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~ 270 (608)
T TIGR03811 195 MDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAA----DIIGIGLDQVIPVPVDSNYRMDINELEKIIR 270 (608)
T ss_pred cccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHH----HHcCCCcccEEEeecCCCCcCCHHHHHHHHH
Confidence 0 04777777777755433 33344 233333 348899988875
Q ss_pred C----C-CceEEEEeCCCCCCcccccHHHHHHHH---HhcCC--EEEEeCCCCCCC---ccc------h-----------
Q 012321 294 N----N-NVSLFFTESPTNPFLRCVDVKLVSDLC---HKKGA--IVCIDGTFATPL---NQK------A----------- 343 (466)
Q Consensus 294 ~----~-~tklV~lesPsNPtG~v~dl~~I~ela---~~~gi--llIvD~t~a~~~---~~~------p----------- 343 (466)
+ . ++-+|+....+..+|.+-|+++|+++| +++|+ +++||.+|+... +.+ |
T Consensus 271 ~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~ 350 (608)
T TIGR03811 271 KLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY 350 (608)
T ss_pred HHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccc
Confidence 3 1 245666677788899999999999998 67887 699999998642 111 0
Q ss_pred -----------------h--ccCCcEEEeccccccccccCceEEEE-EeChHHHHHHHHHHH-----------------H
Q 012321 344 -----------------L--SLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHH-----------------V 386 (466)
Q Consensus 344 -----------------l--~~gaDivv~S~sK~lgG~gdv~gG~v-vg~~eli~~l~~~~~-----------------~ 386 (466)
+ -..+|-+...+||++.-+-. .|++ +.++++.+.+..... .
T Consensus 351 ~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~--~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~l 428 (608)
T TIGR03811 351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYS--AGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYIL 428 (608)
T ss_pred cccccccccccHhHHHHHhcCcCceEEEeCcccccccCCC--eEEEEEeCHHHHHHHhcCcchhccccccCcccccccce
Confidence 0 02589999999999887753 4544 445554443321110 0
Q ss_pred hCCCch--HHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 387 LGGALN--PNAAYLIIRG----MKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 387 ~G~~ls--~~~A~l~lrg----L~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.|.... ....|+.++. .+.+...+++..++++++++.|+++
T Consensus 429 egSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 429 EGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred ecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122222 4667777654 4578889999999999999999883
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-07 Score=98.18 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=128.9
Q ss_pred CCchhHHHHHHHHHhhhCCC----cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc---------
Q 012321 207 YGNPTTVVVEEKMSALEGAE----STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL--------- 270 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e----~~v~~-~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l--------- 270 (466)
+.++...+|.++|.++.... ..+++ +||++|+..++.... ...++||.....|++.......+-
T Consensus 98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~ 177 (459)
T PRK06931 98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV 177 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence 46788889999999887532 24455 799999999887532 334678888888887432221110
Q ss_pred ccCCcEEEEeCCC-------------CHHH----HHHhcc-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012321 271 PKMGITATVIDPA-------------DMEG----LEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (466)
Q Consensus 271 ~~~gi~v~~vd~~-------------D~e~----Le~ai~-----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~ 324 (466)
....-.+..++.. +.+. +++.+. ..++.+|++|....-.|.+.+ +++|.++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~ 257 (459)
T PRK06931 178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK 257 (459)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 0000112222211 1222 233332 124889999987765666553 7899999999
Q ss_pred cCCEEEEeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCC--CchHHHH
Q 012321 325 KGAIVCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAA 396 (466)
Q Consensus 325 ~gillIvD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~--~ls~~~A 396 (466)
+|+++|.||++.. +.+ ......-.||++ +.|.+++. ...|++++++++ +.+... ..+. .-+|..+
T Consensus 258 ~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~gG--~Pi~av~~~~~~-~~~~~~--~~~~T~~gnpla~ 330 (459)
T PRK06931 258 HGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGGG--LPLAVLGIKKEF-DAWQPG--GHTGTFRGNQLAM 330 (459)
T ss_pred cCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccCC--cceeeeeeHHHH-hhccCC--CCCCCCCCCHHHH
Confidence 9999999999542 211 222233468877 58999875 345667776653 443211 1122 2356666
Q ss_pred HHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCcEEEeCCCC
Q 012321 397 YLIIRGMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRVHYPGL 438 (466)
Q Consensus 397 ~l~lrgL~tl~~--R~e~~~~na~~La~~L----~~~p~V~~V~~PgL 438 (466)
..++..|+.+.. .+++..+..++|.+.| +++|.|..|+..|+
T Consensus 331 aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl 378 (459)
T PRK06931 331 ATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGL 378 (459)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCce
Confidence 665555554432 2233333334444433 34676666665544
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-07 Score=105.83 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=135.4
Q ss_pred CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhcc---------------------CCCEEEEcCCCccc
Q 012321 206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP---------------------AGGHIVTTTDCYRK 261 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all~---------------------pGD~VLv~~~~y~~ 261 (466)
.+.++...+|.++|.+..+ .+.+.+..||++|+..++....+ ...+||.....|++
T Consensus 405 ~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG 484 (817)
T PLN02974 405 ENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHG 484 (817)
T ss_pred ccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCC
Confidence 3467778888888888665 24677788999998887764321 12468888888877
Q ss_pred -hHHHHHhhc---------cc----CCcEE----EE---------eCCC-------------------C-----------
Q 012321 262 -TRIFIETVL---------PK----MGITA----TV---------IDPA-------------------D----------- 284 (466)
Q Consensus 262 -t~~~~~~~l---------~~----~gi~v----~~---------vd~~-------------------D----------- 284 (466)
+...+...- .. .+..+ .. ++.. |
T Consensus 485 ~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~ 564 (817)
T PLN02974 485 DTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKA 564 (817)
T ss_pred CCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHH
Confidence 222221100 00 00000 00 0000 0
Q ss_pred -HHHHHHhcc-------CCCceEEEEeCC-CCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----Cc--cchhc
Q 012321 285 -MEGLEAALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----LN--QKALS 345 (466)
Q Consensus 285 -~e~Le~ai~-------~~~tklV~lesP-sNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~----~~--~~pl~ 345 (466)
.+.+++.|+ .+++.+|++|.. ..-.|.+.+ +++|.++|+++|++||.||++... .+ ...+.
T Consensus 565 ~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~g 644 (817)
T PLN02974 565 YRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLG 644 (817)
T ss_pred HHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcC
Confidence 144666553 235899999885 455566653 789999999999999999996532 11 22222
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH------HHHhCCCchHHHHHHHHHhhHHHHHH--HHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL------HHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTA 417 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~------~~~~G~~ls~~~A~l~lrgL~tl~~R--~e~~~~na 417 (466)
.-.||++ +.|.++|.- +..|.+++++++.+.+..- ......+.+|..+..++..|+.+... +++..++.
T Consensus 645 v~PDIi~--~gKgLtgG~-~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~ 721 (817)
T PLN02974 645 CKPDIAC--YAKLLTGGL-VPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPG 721 (817)
T ss_pred CCCCEEe--ecccccCCC-CccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3368887 679998752 2467788888888877421 11111234677777766666655431 11222222
Q ss_pred --------HHHHHHHHcCCCcEEEeCCCC
Q 012321 418 --------LRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 418 --------~~La~~L~~~p~V~~V~~PgL 438 (466)
..+.+.|+++|.|..|+.-|+
T Consensus 722 ~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl 750 (817)
T PLN02974 722 SRLRELWDEELVRAISSLPNVERVVSLGT 750 (817)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeEEEeeee
Confidence 233345567888888776554
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-09 Score=105.44 Aligned_cols=209 Identities=16% Similarity=0.158 Sum_probs=148.8
Q ss_pred hHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHH
Q 012321 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ 290 (466)
..-.||+.||++.|.++.++++-|-+++..++.++.+.||.|++......... ..++...-++.++..+|.++++.
T Consensus 140 vHldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~ler 215 (467)
T KOG1358|consen 140 VHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLER 215 (467)
T ss_pred eecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHH
Confidence 35578999999999999999999999999999999999999999877665533 33333344667788888888887
Q ss_pred hccCCC------------ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch---h-------ccCC
Q 012321 291 ALNNNN------------VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L-------SLGA 348 (466)
Q Consensus 291 ai~~~~------------tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p---l-------~~ga 348 (466)
.+.+.. -+.|++|-..-++|.+.++.+|.++..++...+++|+++..+...+- + ....
T Consensus 216 ll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~i 295 (467)
T KOG1358|consen 216 LLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDI 295 (467)
T ss_pred hccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccce
Confidence 764421 35788899888999999999999999999999999999876654321 0 1236
Q ss_pred cEEEeccccccccccCceEEEEEeChHHH--HHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLV--TQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli--~~l~~~~~~~G~~ls~~~A~l~lrg---L~tl~~R~e~~~~na~~La~~ 423 (466)
|+++.|+.-.++.. ||+.+|+.-++ ++|......+...+.|..+-.+... +++-+.+++..+.....+-..
T Consensus 296 Div~~sm~~alas~----GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~ 371 (467)
T KOG1358|consen 296 DIVTASMETALASG----GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAA 371 (467)
T ss_pred eeeeeccccccccc----CceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchh
Confidence 89999999998875 47888855332 4444444445555666544433333 333334444454444455555
Q ss_pred HHcC
Q 012321 424 LEAH 427 (466)
Q Consensus 424 L~~~ 427 (466)
|+..
T Consensus 372 l~~~ 375 (467)
T KOG1358|consen 372 LSSN 375 (467)
T ss_pred hhcC
Confidence 5554
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-08 Score=101.09 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=124.3
Q ss_pred hHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc-cCC-CEEEEc-CCCccchHHHHHh-hcccCCc------EEEE
Q 012321 211 TTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV-PAG-GHIVTT-TDCYRKTRIFIET-VLPKMGI------TATV 279 (466)
Q Consensus 211 ~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all-~pG-D~VLv~-~~~y~~t~~~~~~-~l~~~gi------~v~~ 279 (466)
...+|.++|.++.. .+.+.+++||++|+..++.... -.| .+|+.. ...|.+....+.. .....++ .+..
T Consensus 89 ~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~ 168 (431)
T PRK06209 89 IELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVT 168 (431)
T ss_pred HHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccc
Confidence 33467888888774 4678889999999998887432 234 355554 2333321111100 0000111 1223
Q ss_pred eCCCCHHHHHHhccC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------chhccCCcEE
Q 012321 280 IDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSLGADLV 351 (466)
Q Consensus 280 vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~------~pl~~gaDiv 351 (466)
++..|++++++.++. +++.+|++|......+..-.+++|.++|++||+++|+||++ +++.. .......|+
T Consensus 169 ~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi- 246 (431)
T PRK06209 169 FRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDL- 246 (431)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcce-
Confidence 445688999988852 24789999876533222334899999999999999999986 33211 112223566
Q ss_pred EeccccccccccCceEEEEEeChHHHHH--HHHH--HH--HhCCC--chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHH
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQ--IRNL--HH--VLGGA--LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMA 421 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~--l~~~--~~--~~G~~--ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La 421 (466)
.+++|.+++. ..+|++++++++++. +... .. ..+.+ .+|..+..++..|+.+.. .+++..++.+++.
T Consensus 247 -~t~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 323 (431)
T PRK06209 247 -SCFGKALGNG--FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323 (431)
T ss_pred -eeehhhhcCC--cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4579999874 347888898888775 3111 01 12323 234555555555554421 3445555555555
Q ss_pred HHHHc----CCCcEEE
Q 012321 422 KILEA----HPKVKRV 433 (466)
Q Consensus 422 ~~L~~----~p~V~~V 433 (466)
+.|++ ++.+..|
T Consensus 324 ~~L~~~~~~~~~~~~v 339 (431)
T PRK06209 324 AGVNEAAAEHGLQDHV 339 (431)
T ss_pred HHHHHHHHhCCCCeEE
Confidence 55543 5554333
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-08 Score=108.30 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=143.7
Q ss_pred HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all---~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
.-.++..+++|.|.+ ++=++-.++++-.+++++.- .+..+|++++.+|+.+...++..++..|+++.. +
T Consensus 126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~ 199 (954)
T PRK12566 126 LLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------D 199 (954)
T ss_pred HHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------c
Confidence 345588899999986 55666666654444444332 225689999999999999888888889999875 3
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC--CCCCCccchhccCCcEEEecccc-----cc
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSATK-----FI 359 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t--~a~~~~~~pl~~gaDivv~S~sK-----~l 359 (466)
++++.++++ +..|++.+|+ -.|.+.|+++|.+++|++|++++ +.+ .+-.++..|-++|+||++.+..- .|
T Consensus 200 ~~~~~~~~~-~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~ 276 (954)
T PRK12566 200 AVDNLAAHA-VFGALLQYPD-THGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGY 276 (954)
T ss_pred chhhcCCCC-EEEEEEECCC-CceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCC
Confidence 445556554 8999999998 68999999999999999999866 433 23346678899999999986543 45
Q ss_pred ccccCceEEEEEeChHHHHHHH----------------------------HHHHHhCCCchH------HHHHHHHHhhHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIR----------------------------NLHHVLGGALNP------NAAYLIIRGMKT 405 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~----------------------------~~~~~~G~~ls~------~~A~l~lrgL~t 405 (466)
|||. +|++.+++++..++- +-+..-..+.++ ...|+++.|-+-
T Consensus 277 GGP~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~G 353 (954)
T PRK12566 277 GGPH---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEG 353 (954)
T ss_pred CCCC---eeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHH
Confidence 6664 788888776654431 111111111111 123444545555
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcEEEeCC
Q 012321 406 LHLRVQQQNSTALRMAKILEAHPKVKRVHYP 436 (466)
Q Consensus 406 l~~R~e~~~~na~~La~~L~~~p~V~~V~~P 436 (466)
|...-++...++.++++.|.+ .+++.++-|
T Consensus 354 l~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~ 383 (954)
T PRK12566 354 LKRIAQRVHRLTAILAAGLEA-KGIKRLNRH 383 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCccccCC
Confidence 555556677788899999988 555544444
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-07 Score=104.46 Aligned_cols=227 Identities=16% Similarity=0.147 Sum_probs=136.9
Q ss_pred CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHH-HHHh----hcccCC-
Q 012321 205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIET----VLPKMG- 274 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~-~~~~----~l~~~g- 274 (466)
.++.+|...+|.++|+++... +.+.+++||++|+..++.... ....+||+....|++... .+.. .-...+
T Consensus 658 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~ 737 (1013)
T PRK06148 658 TRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGK 737 (1013)
T ss_pred CCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCC
Confidence 366788899999999998753 567888999999999887542 234578888888877321 1110 000011
Q ss_pred ---cEEEEe--------CC--CC-------HHHHHHhcc-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012321 275 ---ITATVI--------DP--AD-------MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK 325 (466)
Q Consensus 275 ---i~v~~v--------d~--~D-------~e~Le~ai~-----~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~ 325 (466)
-.+..+ +. .+ .+.+++.+. .+++.+|++|....-.|.+.+ +++|.++|+++
T Consensus 738 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~ 817 (1013)
T PRK06148 738 GRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA 817 (1013)
T ss_pred CCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh
Confidence 011111 11 11 134554442 134899999988766676665 89999999999
Q ss_pred CCEEEEeCCCCC----CC-c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH---HHHhCCCchHHH
Q 012321 326 GAIVCIDGTFAT----PL-N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---HHVLGGALNPNA 395 (466)
Q Consensus 326 gillIvD~t~a~----~~-~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~---~~~~G~~ls~~~ 395 (466)
|+++|.||++.. +. + +.-...-.||++ +.|.+++. ...|.+++++++++.+..- ...++ -+|..
T Consensus 818 g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lggG--~Plgav~~~~ei~~~~~~g~~~~~Tf~--gnpla 891 (1013)
T PRK06148 818 GGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGNG--HPMGAVVTTREIADSFDNGMEYFNTFG--GNPVS 891 (1013)
T ss_pred CCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccCC--cceEEEEEcHHHHhhccCCCccccCCC--CCHHH
Confidence 999999999642 21 1 222223368866 58999875 3467888889888776421 11222 35666
Q ss_pred HHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCcEEEeCCC
Q 012321 396 AYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPG 437 (466)
Q Consensus 396 A~l~lrgL~tl~~--R~e~~~~na~~La~~L~----~~p~V~~V~~Pg 437 (466)
+..++..|+.+.. .+++..+...+|.+.|+ ++|.|..|+.-|
T Consensus 892 ~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~G 939 (1013)
T PRK06148 892 CAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMG 939 (1013)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeec
Confidence 6655555555432 23334444444444443 356666665444
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.6e-08 Score=98.77 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHH---HHHHHh-ccCC----CEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALEGAESTVIM-ASGMSAST---VMLLAL-VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~-~SG~aAi~---~al~al-l~pG----D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
....+|+++|.++.|.+.+-+. .+|++.=. +++++. -..| +.+|+++..|+.... .+...|.+|..+
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA----SAam~G~~VV~V 184 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA----SAAMAGFKVVVV 184 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh----hHhhcCceEEEE
Confidence 4567889999999998877666 45554333 333333 2333 579999999998653 234468888777
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCC--ccchhccCCcEEE
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVL 352 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~~~--~~~pl~~gaDivv 352 (466)
+. .|+++|++++.++ +.++++.+||. .|.. .+|.+|+++.|++|..|..|.+-.... ..+|-++|+|++=
T Consensus 185 ~~~~~G~VDlddLk~k~~~~-~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~H 262 (496)
T COG1003 185 KCDENGNVDLDDLRAKAEDN-LAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVH 262 (496)
T ss_pred ecCCCCCccHHHHHHHhccc-eeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEE
Confidence 64 3899999999875 99999988883 3433 479999999999999999999854332 3678899999999
Q ss_pred ecccccccccc---CceEEEEEeChHHHHHHHH----------------------HHHHhCCCchHHHHHH--HHHhhHH
Q 012321 353 HSATKFIGGHN---DVLAGSISGSGKLVTQIRN----------------------LHHVLGGALNPNAAYL--IIRGMKT 405 (466)
Q Consensus 353 ~S~sK~lgG~g---dv~gG~vvg~~eli~~l~~----------------------~~~~~G~~ls~~~A~l--~lrgL~t 405 (466)
..+||+|+.+. +-.+|-|..+.++...|-. ....+|...--..+|. ...|-+-
T Consensus 263 lNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~G 342 (496)
T COG1003 263 LNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADG 342 (496)
T ss_pred eecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHH
Confidence 99999996332 1123445444444322211 0001111111122343 3334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 012321 406 LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 406 l~~R~e~~~~na~~La~~L~~~ 427 (466)
|..--+...-|+.++++.|+.+
T Consensus 343 L~~ase~AvLNANYia~rL~~~ 364 (496)
T COG1003 343 LKQASEVAVLNANYIARRLKGY 364 (496)
T ss_pred HHHHHHHHHHhHHHHHHHhhhc
Confidence 4444455567899999999864
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-07 Score=97.16 Aligned_cols=162 Identities=13% Similarity=0.157 Sum_probs=99.8
Q ss_pred CCCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHhcc--------C------CCEEEEcCCCccchHHHHHh
Q 012321 206 RYGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVP--------A------GGHIVTTTDCYRKTRIFIET 268 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~---g~e~~v~~~SG~aAi~~al~all~--------p------GD~VLv~~~~y~~t~~~~~~ 268 (466)
.+.++...++.++|+++. +.+.+.+.+||++|+..++..... . +.+||.....|++.......
T Consensus 81 ~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als 160 (431)
T TIGR03251 81 DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLS 160 (431)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhh
Confidence 344666777777788774 236788889999999988875421 1 36799988888774322111
Q ss_pred hcc------cCC-------cEEEEe---------C------CCCHHHHHHhcc--CCCceEEEEeCCCCCCcccc----c
Q 012321 269 VLP------KMG-------ITATVI---------D------PADMEGLEAALN--NNNVSLFFTESPTNPFLRCV----D 314 (466)
Q Consensus 269 ~l~------~~g-------i~v~~v---------d------~~D~e~Le~ai~--~~~tklV~lesPsNPtG~v~----d 314 (466)
.-. .+. +...+. + ..+++++++.+. ..++.+|++|......|.+. -
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~ 240 (431)
T TIGR03251 161 LTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEF 240 (431)
T ss_pred ccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHH
Confidence 100 000 000000 0 012344555553 23589999998877777665 3
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCC-Cc-----cchhccCCcEEEeccccccccccCceEEEEEeCh
Q 012321 315 VKLVSDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG 374 (466)
Q Consensus 315 l~~I~ela~~~gillIvD~t~a~~-~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~ 374 (466)
+++|.++|++||+++|+||++... .. ........|+++ ++|.+. ++|++.+++
T Consensus 241 l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~~-----~~g~~~~~~ 299 (431)
T TIGR03251 241 LRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKTQ-----VCGIMAGRR 299 (431)
T ss_pred HHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccCc-----cceEEecch
Confidence 899999999999999999997521 11 112233468886 678762 356776653
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=98.00 Aligned_cols=205 Identities=11% Similarity=0.027 Sum_probs=131.2
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe---C-
Q 012321 210 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI---D- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v---d- 281 (466)
...+..++.|.++++.+ +++++ ++|+.++.+++..++.+||++++....+.+.+ +. ..++++|...... +
T Consensus 52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r-~~-~~a~~~g~~~~~~~~~~~ 129 (365)
T PLN02452 52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKK-AA-KEAKKYCKTNVIASGKDE 129 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHH-HH-HHHHHhCCCcEEEecCCC
Confidence 45677788899999863 35554 77789999999999999999888766655533 22 4455566433322 1
Q ss_pred ----CCCHHHHHHhccCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEecc
Q 012321 282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA 355 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~ 355 (466)
..++++++ ..+ +.+.|++++-...+|.. .|++++. ++++++|.+...+. ..+..++|+ ++.|.
T Consensus 130 ~~~~~~~~~~~~--~~~-~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v--~~~sa 198 (365)
T PLN02452 130 KYTKIPSVSEWE--LTP-DAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGV--IYAGA 198 (365)
T ss_pred CCCCCCChHHcC--CCC-CCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCE--EEEec
Confidence 22455542 223 36788876555667984 7877765 28999999965442 234445555 44699
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHH-------HHHh--C---CCchHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVL--G---GALNPNAAYLIIRGMKT------LHLRVQQQNSTA 417 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~~~--G---~~ls~~~A~l~lrgL~t------l~~R~e~~~~na 417 (466)
+|.+|.+| .|+++.++++++++... .... + .+.+....+.+...+++ ++.+.+++++.+
T Consensus 199 qK~lGP~G---l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a 275 (365)
T PLN02452 199 QKNVGPSG---VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKA 275 (365)
T ss_pred ccccCCCC---eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99998665 57888888887665321 1000 1 22333333333333433 456677888999
Q ss_pred HHHHHHHHcCCCc
Q 012321 418 LRMAKILEAHPKV 430 (466)
Q Consensus 418 ~~La~~L~~~p~V 430 (466)
+.+.++|++.+++
T Consensus 276 ~~l~~~l~~~~G~ 288 (365)
T PLN02452 276 DLLYDAIDESNGF 288 (365)
T ss_pred HHHHHHHHhCCCc
Confidence 9999999987654
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=93.36 Aligned_cols=222 Identities=15% Similarity=0.196 Sum_probs=133.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCC-c
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMG-I 275 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~g-i 275 (466)
|.-++.-.-.++.+.+.|.+..|. .+-|++|+|. .|+..++..++ .+.+-|+++-|-|+-.-..+ ..+| .
T Consensus 109 YS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti----~l~~~~ 184 (475)
T KOG0258|consen 109 YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATI----SLLGGT 184 (475)
T ss_pred cccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHH----HHhCCc
Confidence 333333333444455555555552 3566677776 88888877665 56788999999987643322 2222 2
Q ss_pred EEEE-eC-----CCCHHHHHHhccC----CCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCccc
Q 012321 276 TATV-ID-----PADMEGLEAALNN----NNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQK 342 (466)
Q Consensus 276 ~v~~-vd-----~~D~e~Le~ai~~----~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~~ 342 (466)
.+.+ +| ..|.++|++.+++ -+++++++-||.||||.+. .+++|..+|+++|+.|+.||+|-..+...
T Consensus 185 ~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~ 264 (475)
T KOG0258|consen 185 QVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTT 264 (475)
T ss_pred ccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCC
Confidence 2222 22 3477888776643 2477777779999999997 58999999999999999999864432211
Q ss_pred ---------h-hccC---C----cEEEeccccccccccCceEEEEEe---ChHHHHHHHHHHHH------hCC-----Cc
Q 012321 343 ---------A-LSLG---A----DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV------LGG-----AL 391 (466)
Q Consensus 343 ---------p-l~~g---a----Divv~S~sK~lgG~gdv~gG~vvg---~~eli~~l~~~~~~------~G~-----~l 391 (466)
. .++| . -+.++|.||.+.|--..+||+.=. .++..+.+.++... .|. ..
T Consensus 265 ~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~V 344 (475)
T KOG0258|consen 265 GSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVV 344 (475)
T ss_pred CcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceec
Confidence 0 1122 2 267789999988776677888632 34444444333221 110 00
Q ss_pred h-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 392 N-------PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 392 s-------~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
+ .++.+. +.-+..++...+.++.+.+.++..++|..
T Consensus 345 nPP~Pgd~Sy~~~~-----~Ekd~il~~l~~ra~l~~~~~ns~~gi~c 387 (475)
T KOG0258|consen 345 NPPKPGDPSYDLFS-----SEKDGILSSLRSRAKLTEDAFNSLEGISC 387 (475)
T ss_pred CCCCCCCcchhhhh-----hhhHhHHHHHHHHhHHHHHHHhhcCceee
Confidence 0 122222 12233455666778888889988887653
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-07 Score=89.71 Aligned_cols=213 Identities=20% Similarity=0.225 Sum_probs=136.9
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc------c--CCC--EEEEcCCCccc-hHHHH---------Hh
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV------P--AGG--HIVTTTDCYRK-TRIFI---------ET 268 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all------~--pGD--~VLv~~~~y~~-t~~~~---------~~ 268 (466)
|....++++.+.+++|.+..+-+.+|.+|...++.... + |.| .|+.....|.+ +...+ ..
T Consensus 100 nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~ 179 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDG 179 (427)
T ss_pred hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhc
Confidence 45667889999999999999999999999998876432 1 323 34444455544 21111 11
Q ss_pred hcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----C--
Q 012321 269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----P-- 338 (466)
Q Consensus 269 ~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~----~-- 338 (466)
.-+-..-.++.++-.|.++|+.+++..+++.+++|...-.-|.+.+ ++++.++|++|++++|.||.+.. +
T Consensus 180 fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~ 259 (427)
T KOG1402|consen 180 FGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKL 259 (427)
T ss_pred cCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcE
Confidence 1111112255667779999999998877999999999988898875 89999999999999999999643 1
Q ss_pred CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHHHHHHHHHHHH
Q 012321 339 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLHLRVQQQNST 416 (466)
Q Consensus 339 ~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~n 416 (466)
+.......-.|+|+ +.|.|+|.-- ....++++++++-.++...+ .+|+ +|+.+..+...|+-+. -++..++
T Consensus 260 la~d~env~PDivi--lgKalSGG~~-Pvsavl~~~~im~~~~pgeHgsTygg--NpLg~~vaiAalevi~--eekL~er 332 (427)
T KOG1402|consen 260 LACDYENVRPDIVI--LGKALSGGVY-PVSAVLADDDIMLNIKPGEHGSTYGG--NPLGCAVAIAALEVIV--EEKLVER 332 (427)
T ss_pred EEeehhhcCCCeEE--EeccccCCee-eeEEEEecHHHHhccCCCccccccCC--ChHHHHHHHHHHHHHH--HHHHHHH
Confidence 11222333568888 6799987642 23445677777655543222 2333 4565555544444432 2344555
Q ss_pred HHHHH----HHHHcCC
Q 012321 417 ALRMA----KILEAHP 428 (466)
Q Consensus 417 a~~La----~~L~~~p 428 (466)
+..|- ..|++.+
T Consensus 333 a~~lG~~l~~~L~~l~ 348 (427)
T KOG1402|consen 333 AAKLGEILRDQLNKLQ 348 (427)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 55544 4455543
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-07 Score=91.20 Aligned_cols=229 Identities=18% Similarity=0.203 Sum_probs=134.7
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh-ccCC-CEEEEcCCCccchHHHH-Hhh-cccC----
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAG-GHIVTTTDCYRKTRIFI-ETV-LPKM---- 273 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~al-l~pG-D~VLv~~~~y~~t~~~~-~~~-l~~~---- 273 (466)
..-|.+|....|.++|..++-. ..+.+++||++|+.++++.. +-.| -+||.-...|.+..... ... +..+
T Consensus 86 t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~ 165 (442)
T KOG1404|consen 86 TSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNF 165 (442)
T ss_pred eccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccC
Confidence 4445577777887777776643 56778899999999887643 2223 36777788887633221 100 1111
Q ss_pred -Cc--EEEEeCCC---------C---------HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012321 274 -GI--TATVIDPA---------D---------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK 325 (466)
Q Consensus 274 -gi--~v~~vd~~---------D---------~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~ 325 (466)
+. .+...... + .+++++.+. +..+...+.|+...-.|.+.. +++..++|+++
T Consensus 166 ~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~ 245 (442)
T KOG1404|consen 166 PGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR 245 (442)
T ss_pred CCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc
Confidence 01 01111100 1 244454442 234788899999877777764 79999999999
Q ss_pred CCEEEEeCCCCC----CCccchhccC--CcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-HHhCCCchHHHHHH
Q 012321 326 GAIVCIDGTFAT----PLNQKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGALNPNAAYL 398 (466)
Q Consensus 326 gillIvD~t~a~----~~~~~pl~~g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~~~G~~ls~~~A~l 398 (466)
|.++|.||++.. +.+.--..+| .||+ ++.|.+|.. ...|.++..+|+.+-+.+.. ....-.-+|+.+..
T Consensus 246 Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiGnG--~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~av 321 (442)
T KOG1404|consen 246 GGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIGNG--FPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAV 321 (442)
T ss_pred CCEEEehhhhhccccccccccccccCCCccHH--HHHhhccCC--CcceeeecCHHHHHHHHhccccccccCCCchhHHH
Confidence 999999999643 2111111223 3554 689999876 34677788888887776544 21112235666665
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH--------HcCCCcEEEeCCCC
Q 012321 399 IIRGMKTLHLRVQQQNSTALRMAKIL--------EAHPKVKRVHYPGL 438 (466)
Q Consensus 399 ~lrgL~tl~~R~e~~~~na~~La~~L--------~~~p~V~~V~~PgL 438 (466)
.+.-|+-++ -++.++|+..+...| .+||.|..|+--||
T Consensus 322 g~aVL~Vik--ee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GL 367 (442)
T KOG1404|consen 322 GLAVLKVIK--EENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGL 367 (442)
T ss_pred HHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhcCCceeeccccee
Confidence 555555443 234455554444333 34677777765554
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=89.29 Aligned_cols=224 Identities=19% Similarity=0.207 Sum_probs=142.9
Q ss_pred CccCCCCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHhccCC--C------EEEEcCCCccc-hHHHHHhh
Q 012321 202 FEYGRYGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVPAG--G------HIVTTTDCYRK-TRIFIETV 269 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~---g~e~~v~~~SG~aAi~~al~all~pG--D------~VLv~~~~y~~-t~~~~~~~ 269 (466)
|..+-+.+-..-.+++.|.+.. ..+.+.+..||++|+..+|....+.. + .+|....+|++ +...+...
T Consensus 90 hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~ 169 (433)
T KOG1401|consen 90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT 169 (433)
T ss_pred eccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh
Confidence 4444333333667788888877 45788999999999998887543211 2 38888888876 44444321
Q ss_pred -cccCCc-------EEEEeCCCCHHHHHHhccCCC--ceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEeCCC
Q 012321 270 -LPKMGI-------TATVIDPADMEGLEAALNNNN--VSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTF 335 (466)
Q Consensus 270 -l~~~gi-------~v~~vd~~D~e~Le~ai~~~~--tklV~lesPsNPtG~v~-d---l~~I~ela~~~gillIvD~t~ 335 (466)
-..++. ++......|..++++.++.++ +.+|++|...---|.+. | +..|.++|+++|+++|.||++
T Consensus 170 ~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~ 249 (433)
T KOG1401|consen 170 GNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ 249 (433)
T ss_pred cccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh
Confidence 222333 233334568899999887653 78999998886566554 3 678899999999999999997
Q ss_pred CCC------CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhCCC--chHHHHHHHHHhhHHH
Q 012321 336 ATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGA--LNPNAAYLIIRGMKTL 406 (466)
Q Consensus 336 a~~------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G~~--ls~~~A~l~lrgL~tl 406 (466)
... +.+..+..-.||.+ +.|.++|. +..|+.++++++.+.+..--. ..|.+ -+|+.+-.+...|+++
T Consensus 250 tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~gG--lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l 325 (433)
T KOG1401|consen 250 TGLGRLGYGWAQEYFGVTPDITT--VAKPLGGG--LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDEL 325 (433)
T ss_pred hCccccchHHHHHHhCcCCccee--ehhhccCC--ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHH
Confidence 531 12333334457665 78999986 567899999998888763222 22322 3566666666666554
Q ss_pred H--HHHHH----HHHHHHHHHHHHHcCCC
Q 012321 407 H--LRVQQ----QNSTALRMAKILEAHPK 429 (466)
Q Consensus 407 ~--~R~e~----~~~na~~La~~L~~~p~ 429 (466)
. ..+++ ....++.+.+++.+.|.
T Consensus 326 ~~~e~~k~vs~~~k~L~~~l~e~~~~~~~ 354 (433)
T KOG1401|consen 326 KDPETLKNVSKIGKELRKLLDEYLKKTPN 354 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 2 22333 34445556666666553
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=92.30 Aligned_cols=223 Identities=13% Similarity=0.125 Sum_probs=125.2
Q ss_pred CCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHhcc--------C------CCEEEEcCCCccchHHHHHhh
Q 012321 207 YGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVP--------A------GGHIVTTTDCYRKTRIFIETV 269 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~---g~e~~v~~~SG~aAi~~al~all~--------p------GD~VLv~~~~y~~t~~~~~~~ 269 (466)
+.++...+|.++|+++. +.+.+.+++||++|+..++..... . ..+||.....|++........
T Consensus 89 ~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~ 168 (443)
T PRK08297 89 VYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSL 168 (443)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhh
Confidence 45677778888888876 236788899999999998875421 1 257998888887743221111
Q ss_pred c--c---c--CC------cEEEEe--C--C-----------CCHHHHHHhcc--CCCceEEEEeCCCCCCcccc----cH
Q 012321 270 L--P---K--MG------ITATVI--D--P-----------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCV----DV 315 (466)
Q Consensus 270 l--~---~--~g------i~v~~v--d--~-----------~D~e~Le~ai~--~~~tklV~lesPsNPtG~v~----dl 315 (466)
- . . +. +....+ + . .+++++++.+. .+++.+|++|......|.+. -+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl 248 (443)
T PRK08297 169 TNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFF 248 (443)
T ss_pred cCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHH
Confidence 0 0 0 00 100000 0 0 02345556664 23589999988776667653 38
Q ss_pred HHHHHHHHhcCCEEEEeCCCCCC-Cc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH-HH--HH
Q 012321 316 KLVSDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LH--HV 386 (466)
Q Consensus 316 ~~I~ela~~~gillIvD~t~a~~-~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~-~~--~~ 386 (466)
++|.++|++||+++|+||++... -. ........|+++ ++|.+. ++|++.+++ +.+.+.. +. ..
T Consensus 249 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~~-i~~~~~~~~~~~~~ 320 (443)
T PRK08297 249 AAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGRR-VDEVEDNVFAVSSR 320 (443)
T ss_pred HHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecchH-HHHhhhhhccCccc
Confidence 99999999999999999997532 11 111223468886 689874 356665543 2221111 10 01
Q ss_pred hCC--CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc----CCCcE-EEeCCC
Q 012321 387 LGG--ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA----HPKVK-RVHYPG 437 (466)
Q Consensus 387 ~G~--~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~----~p~V~-~V~~Pg 437 (466)
.+. ..+|..+..++..|+.+. ..+++..+..+++.+.|++ +|.+. .|...|
T Consensus 321 ~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G 380 (443)
T PRK08297 321 INSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRG 380 (443)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccc
Confidence 111 235665555555555442 2344555555555555543 55443 444333
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-07 Score=90.74 Aligned_cols=222 Identities=19% Similarity=0.153 Sum_probs=140.4
Q ss_pred CCCccCCC--CchhHHHHHHHH----HhhhCC---Cc--EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchH--HHH
Q 012321 200 ASFEYGRY--GNPTTVVVEEKM----SALEGA---ES--TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR--IFI 266 (466)
Q Consensus 200 ~~~~Y~R~--~~p~~~~Lee~l----A~l~g~---e~--~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~--~~~ 266 (466)
.+|.-.|| +|...+++|... -+.++. .+ .|---||+-|+..+..++++|+|+|.-.+--.++.. .+.
T Consensus 70 EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~ 149 (477)
T KOG2467|consen 70 EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ 149 (477)
T ss_pred cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc
Confidence 34554454 566666554332 234453 23 333469999999999999999999987776666522 111
Q ss_pred HhhcccCCcEEEEe-------C----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC
Q 012321 267 ETVLPKMGITATVI-------D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (466)
Q Consensus 267 ~~~l~~~gi~v~~v-------d----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~ 335 (466)
... ++....-.++ | ..|.|.||+.....++|+|+.-.. -.-+..|.+++.++|.+.|++|++|-++
T Consensus 150 T~~-kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~S--aY~R~~DYaR~R~Iad~~gA~Lm~DMAH 226 (477)
T KOG2467|consen 150 TPT-KKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTS--AYSRLIDYARFRKIADKVGAYLMADMAH 226 (477)
T ss_pred cCC-ceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccc--cchhhccHHHHHHHHHhcCceeehhhhh
Confidence 111 1111111111 1 247888888766666888886333 3567789999999999999999999996
Q ss_pred CC-----CCccchhccCCcEEEeccccccccccCceEEEEEeCh---------------HHHHHHHHHHH--HhCCCch-
Q 012321 336 AT-----PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGALN- 392 (466)
Q Consensus 336 a~-----~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~---------------eli~~l~~~~~--~~G~~ls- 392 (466)
.. ++..+|+++ +|||..+.||.|-|+ +||+|.-++ ++-+++..... ..|+.-+
T Consensus 227 ISgLVAA~vipsPFey-~DiVTTTTHKsLRGP---Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNh 302 (477)
T KOG2467|consen 227 ISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGP---RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNH 302 (477)
T ss_pred HHHHHhcccCCCcccc-cceeeccccccccCC---cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcc
Confidence 44 455778887 999999999999999 488886432 12233332111 1222211
Q ss_pred HHHHH-HHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 393 PNAAY-LIIR--GMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 393 ~~~A~-l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
...+. .++. .-..+....++..+|++.|++.|.++.
T Consensus 303 tIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~G 341 (477)
T KOG2467|consen 303 TIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRG 341 (477)
T ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111 1222 233466777888999999999998864
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-06 Score=85.54 Aligned_cols=236 Identities=16% Similarity=0.127 Sum_probs=138.2
Q ss_pred cCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhh-hCCC---------cEEEeCCHHHHHHHHHHHh--ccCCCEE
Q 012321 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL-EGAE---------STVIMASGMSASTVMLLAL--VPAGGHI 252 (466)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l-~g~e---------~~v~~~SG~aAi~~al~al--l~pGD~V 252 (466)
++..+..+......+....|- +-.-...+.+.++++ +|.+ ..+-+.+|+.|+..+..-+ ..+...|
T Consensus 46 l~aV~~Ae~~l~~~~~~k~Yl--~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~v 123 (396)
T COG1448 46 LRAVKKAEKRLLEQEKTKNYL--PIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATV 123 (396)
T ss_pred hHHHHHHHHHhhccccccccC--CcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceE
Confidence 344444444443333222333 222244555555554 4532 2444578888887765443 4556679
Q ss_pred EEcCCCccchHHHHHhhcccCCcEEEEe---C----CCCHHHHHHhccCC-CceEEEE-eCCCCCCccccc---HHHHHH
Q 012321 253 VTTTDCYRKTRIFIETVLPKMGITATVI---D----PADMEGLEAALNNN-NVSLFFT-ESPTNPFLRCVD---VKLVSD 320 (466)
Q Consensus 253 Lv~~~~y~~t~~~~~~~l~~~gi~v~~v---d----~~D~e~Le~ai~~~-~tklV~l-esPsNPtG~v~d---l~~I~e 320 (466)
-+++|+|+.....+ ...|.++..+ | ..|.+.+.+.+++- +..+|++ ..-|||||.-.. .++|.+
T Consensus 124 wis~PtW~NH~~If----~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~ 199 (396)
T COG1448 124 WISDPTWPNHKAIF----EAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELAD 199 (396)
T ss_pred EeCCCCcHhHHHHH----HhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHH
Confidence 99999999866444 4567776554 3 23666666655431 1234444 455799998764 578999
Q ss_pred HHHhcCCEEEEeCCCC---CCCccchh------ccCC-cEEEeccccccccccCceEEEEEe--ChHHHHH----HHHHH
Q 012321 321 LCHKKGAIVCIDGTFA---TPLNQKAL------SLGA-DLVLHSATKFIGGHNDVLAGSISG--SGKLVTQ----IRNLH 384 (466)
Q Consensus 321 la~~~gillIvD~t~a---~~~~~~pl------~~ga-Divv~S~sK~lgG~gdv~gG~vvg--~~eli~~----l~~~~ 384 (466)
+.+++|.+-++|-+|- .++..+.. ..+. -+|..|+||.|+..+.+.|++.+. +++..++ +....
T Consensus 200 ~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~i 279 (396)
T COG1448 200 LIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAII 279 (396)
T ss_pred HHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999964 34332211 1223 488899999999998877776553 3444443 33333
Q ss_pred HHhCCCchHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 385 HVLGGALNPNAAYLII----------RGMKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 385 ~~~G~~ls~~~A~l~l----------rgL~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+..-++++...+.++. .-.+.+....+++.+.++.+.+.|++
T Consensus 280 R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 280 RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKA 331 (396)
T ss_pred HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333221 11233444556667777888888887
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-06 Score=93.22 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=95.5
Q ss_pred CCchhHHHHHHHHHh----hhC--CCcEEEeCCHHHHHHHHHHHhcc--------------------------CC---CE
Q 012321 207 YGNPTTVVVEEKMSA----LEG--AESTVIMASGMSASTVMLLALVP--------------------------AG---GH 251 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~----l~g--~e~~v~~~SG~aAi~~al~all~--------------------------pG---D~ 251 (466)
+.++....|.++|.+ +.. .+.+.+.+||++|+..++..... +| .+
T Consensus 98 ~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ 177 (464)
T TIGR00699 98 LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLS 177 (464)
T ss_pred CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCE
Confidence 556667777777654 433 36788889999999988875421 11 26
Q ss_pred EEEcCCCccchHHH-HHhhc----ccCCc---EEEEeCC-------------------CCHHHHHHhccC--CCceEEEE
Q 012321 252 IVTTTDCYRKTRIF-IETVL----PKMGI---TATVIDP-------------------ADMEGLEAALNN--NNVSLFFT 302 (466)
Q Consensus 252 VLv~~~~y~~t~~~-~~~~l----~~~gi---~v~~vd~-------------------~D~e~Le~ai~~--~~tklV~l 302 (466)
||.....|++.... +...- ...+. .+..++. .+++.+++.+.+ .++.+|++
T Consensus 178 ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~ 257 (464)
T TIGR00699 178 ILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIV 257 (464)
T ss_pred EEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 99988888874322 21110 00011 1111110 134567777742 24899999
Q ss_pred eCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CC--ccchhcc--CCcEEEecccccccc
Q 012321 303 ESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PL--NQKALSL--GADLVLHSATKFIGG 361 (466)
Q Consensus 303 esPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~----~~--~~~pl~~--gaDivv~S~sK~lgG 361 (466)
|......|.+.+ +++|.++|+++|++||+||++.. +. ....... ..||++ ++|.+++
T Consensus 258 EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~ 326 (464)
T TIGR00699 258 EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQT 326 (464)
T ss_pred eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhcc
Confidence 988877788876 89999999999999999999632 11 1111112 267765 6899964
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-06 Score=89.57 Aligned_cols=204 Identities=12% Similarity=0.040 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEE-EcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 210 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIV-TTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~-~SG~aAi~~al~all~pGD~VL-v~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
...+..++.|.++++.+ +++++ ++|+.++.++.+.++.+||+++ +....+.+.. +. ..++++| ++..+.
T Consensus 49 ~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r-~~-~ea~~~g-~v~~~~~~~ 125 (364)
T PRK12462 49 SLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRK-AI-GEASRVA-AMRVVWDGA 125 (364)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHH-HH-HHHHhcC-CceEecCcC
Confidence 34566788888888862 35554 4567999999999999999655 4334444433 22 3344555 333332
Q ss_pred ------CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEec
Q 012321 282 ------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS 354 (466)
Q Consensus 282 ------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S 354 (466)
..+++++ .+.+ +.+.|++++-...+|...+ ++.+.+++++|+|.+-..+. ..+.-+ .|+++.+
T Consensus 126 ~~~~~~~p~~~~~--~~~~-d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~--~dvi~ag 195 (364)
T PRK12462 126 ASGYRTLPSLAEL--DWDA-RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEA--YGMVYAH 195 (364)
T ss_pred CCCCCcCCCHHHh--ccCC-CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHH--ccEEEee
Confidence 1234444 2333 2677777555556788875 33334689999999844321 122223 3999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHH-------HH-----HhCCCchHHHHHHHHHhhHH-------HHHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH-----VLGGALNPNAAYLIIRGMKT-------LHLRVQQQNS 415 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~~-----~~G~~ls~~~A~l~lrgL~t-------l~~R~e~~~~ 415 (466)
..|.+|++| .++++.+++++++.... +. ..-.+++.+.-|.+...+++ ++.+.+++.+
T Consensus 196 sQKnlgP~G---ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ 272 (364)
T PRK12462 196 AQKNLGPAG---VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINAR 272 (364)
T ss_pred ccccCCCCc---eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999665 46888888887664421 10 01123333444444334333 3456678889
Q ss_pred HHHHHHHHHHcCCC
Q 012321 416 TALRMAKILEAHPK 429 (466)
Q Consensus 416 na~~La~~L~~~p~ 429 (466)
.++.+.+++++.+.
T Consensus 273 ka~~ly~~id~~~~ 286 (364)
T PRK12462 273 KAAMLYATLDALNE 286 (364)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999873
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-06 Score=84.46 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHhhhCC--CcEEEeCCHH-HHHHHHHH-Hhc---c---------CCCEEEEcCCCccchHHHHHhhcccC
Q 012321 210 PTTVVVEEKMSALEGA--ESTVIMASGM-SASTVMLL-ALV---P---------AGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e~~v~~~SG~-aAi~~al~-all---~---------pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.-..++++.+++++|. ++.++..+.+ .-+.-++. +++ . +.-+.|++.|.|-..+. +.+.+
T Consensus 69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa----i~E~~ 144 (425)
T PF12897_consen 69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA----ITEHF 144 (425)
T ss_dssp S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH----HHHHC
T ss_pred CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH----HHHhh
Confidence 3467889999999997 5666666655 33333222 221 1 12368999999987664 45568
Q ss_pred CcEEEEeC----CCCHHHHHHhcc-CCCceEEEEeCC--CCCCcccccHHHHHHHH----HhcCCEEEEeCCCCCCCcc-
Q 012321 274 GITATVID----PADMEGLEAALN-NNNVSLFFTESP--TNPFLRCVDVKLVSDLC----HKKGAIVCIDGTFATPLNQ- 341 (466)
Q Consensus 274 gi~v~~vd----~~D~e~Le~ai~-~~~tklV~lesP--sNPtG~v~dl~~I~ela----~~~gillIvD~t~a~~~~~- 341 (466)
|++...|+ ..|.+.+++.+. +..+|.||+ .| +||+|.++.-+.+.++| ...+..++.||+|+...+.
T Consensus 145 Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWc-VP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~ 223 (425)
T PF12897_consen 145 GIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWC-VPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYD 223 (425)
T ss_dssp T-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE--SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSS
T ss_pred CcEEEecCCCCCCCCHHHHHHHHhcCCccceEEe-CCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccc
Confidence 98887775 458999999984 334898886 66 59999999766555555 3578999999998754331
Q ss_pred --------chh----ccC---CcEEEeccccc-cccccCceEEEEEeChHHHHHHHHHHHHhCCCch---HHHHHHHHHh
Q 012321 342 --------KAL----SLG---ADLVLHSATKF-IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN---PNAAYLIIRG 402 (466)
Q Consensus 342 --------~pl----~~g---aDivv~S~sK~-lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls---~~~A~l~lrg 402 (466)
+.+ +.| .-+++.|+||. |.|.| .+++.++++-++.+++.......... ++.-...++.
T Consensus 224 ~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG---va~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d 300 (425)
T PF12897_consen 224 EEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG---VAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKD 300 (425)
T ss_dssp SSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS----EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHS
T ss_pred cccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc---eeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcC
Confidence 111 112 23788999995 55554 47888898888877766554443333 3322233344
Q ss_pred hH-HHHHHHHHHHH
Q 012321 403 MK-TLHLRVQQQNS 415 (466)
Q Consensus 403 L~-tl~~R~e~~~~ 415 (466)
.+ .+...|++|.+
T Consensus 301 ~~gGv~aHM~kHa~ 314 (425)
T PF12897_consen 301 AEGGVRAHMRKHAA 314 (425)
T ss_dssp HHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 44 55566666654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-06 Score=83.67 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=96.5
Q ss_pred CcEEEeCCHH-HHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccC
Q 012321 226 ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNN 294 (466)
Q Consensus 226 e~~v~~~SG~-aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--------~D~e~Le~ai~~ 294 (466)
..+++++-.+ .++.+.++++. ..++.|+.+.-.+.+.+..+ ...|.++..++. .|.+.+++.+++
T Consensus 75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai----~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~ 150 (389)
T PF05889_consen 75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAI----ERAGLEPVVVENVLEGDELITDLEAIEAKIEE 150 (389)
T ss_dssp CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHH----HHTT-EEEEE-EEEETTEEEEHHHHHHHHHHH
T ss_pred cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHH----HhcCCeEEEeeccCCCCeeeccHHHHHHHHHH
Confidence 5677775444 46666776664 56788998877776655433 234666655542 256777777753
Q ss_pred --CCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCCCC------ccchhccC-CcEEEeccccccccccC
Q 012321 295 --NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLG-ADLVLHSATKFIGGHND 364 (466)
Q Consensus 295 --~~tklV~lesPsNPtG~v~d-l~~I~ela~~~gillIvD~t~a~~~------~~~pl~~g-aDivv~S~sK~lgG~gd 364 (466)
....+.++.+++-..++..| +++|+++|+++|++.++-++|+--. .++....| .|+++.|+-|-|--+.
T Consensus 151 ~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPv- 229 (389)
T PF05889_consen 151 LGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPV- 229 (389)
T ss_dssp HCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEES-
T ss_pred hCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecC-
Confidence 12578888899888899988 9999999999999999999998521 13333444 6999999999886653
Q ss_pred ceEEEEEe-ChHHHHHHHHHH
Q 012321 365 VLAGSISG-SGKLVTQIRNLH 384 (466)
Q Consensus 365 v~gG~vvg-~~eli~~l~~~~ 384 (466)
.++.+.+ ++..+..+.+..
T Consensus 230 -Ggai~As~~~~~i~~vs~~Y 249 (389)
T PF05889_consen 230 -GGAIMASFDPSGILAVSKEY 249 (389)
T ss_dssp -SHEEEEESSHHHHHHHHHTS
T ss_pred -CCcEEEecCHHHHHHHHHHh
Confidence 2334444 456777666543
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-05 Score=79.90 Aligned_cols=240 Identities=15% Similarity=0.226 Sum_probs=146.1
Q ss_pred HHHHHhcccCCCccCCCCchhHHHHHHH----HHhhhC-----------CCcEEEeCCHHHHHHHHHHHhc-------cC
Q 012321 191 LIDFKEKRRASFEYGRYGNPTTVVVEEK----MSALEG-----------AESTVIMASGMSASTVMLLALV-------PA 248 (466)
Q Consensus 191 ~~~~~~~~~~~~~Y~R~~~p~~~~Lee~----lA~l~g-----------~e~~v~~~SG~aAi~~al~all-------~p 248 (466)
+.+...+..+.-.++-...|...+||.. |+++.+ ....++.++.+++...++.+.. +.
T Consensus 90 ladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~ 169 (511)
T KOG0628|consen 90 LADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKS 169 (511)
T ss_pred HHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhc
Confidence 4444555444445555578999999854 444433 2457889999877766665431 22
Q ss_pred CC-----------E-EEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC----ceEEEEeCCCC
Q 012321 249 GG-----------H-IVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN----VSLFFTESPTN 307 (466)
Q Consensus 249 GD-----------~-VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~----tklV~lesPsN 307 (466)
++ - +-+++..|.+. +...-..+++++.+.. .+.+.|+++|.++. +-.+++-+..
T Consensus 170 ~~p~~~e~~~~~~lV~Y~SDqahssv----eka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G- 244 (511)
T KOG0628|consen 170 RPPELHESSVLARLVAYCSDQAHSSV----EKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG- 244 (511)
T ss_pred CCCcccchhhhhhheEEecCcccchH----HHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-
Confidence 21 1 23344445443 2333334666666643 25777887776431 2344443333
Q ss_pred CCccc--ccHHHHHHHHHhcCCEEEEeCCCCCCCcc----chhccC---CcEEEeccccccccccCceEEEE--------
Q 012321 308 PFLRC--VDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG---ADLVLHSATKFIGGHNDVLAGSI-------- 370 (466)
Q Consensus 308 PtG~v--~dl~~I~ela~~~gillIvD~t~a~~~~~----~pl~~g---aDivv~S~sK~lgG~gdv~gG~v-------- 370 (466)
-|+.+ -++++|..+|+++|+||+||.+|+..... +.+-.| +|-+-...||++--+-|.-.=|+
T Consensus 245 TT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~ 324 (511)
T KOG0628|consen 245 TTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSR 324 (511)
T ss_pred CccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeee
Confidence 34444 36999999999999999999999865442 222223 56777778898876655422222
Q ss_pred --EeChHHHHH--------HHHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeC
Q 012321 371 --SGSGKLVTQ--------IRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY 435 (466)
Q Consensus 371 --vg~~eli~~--------l~~~~~~~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~ 435 (466)
-.++.+++. ++.++-.+|...-.+.-|..+| |.+.+..++.++.+.++.+-+.+.+-+..+.+.-
T Consensus 325 ~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~ 401 (511)
T KOG0628|consen 325 AFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNK 401 (511)
T ss_pred eeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecc
Confidence 122222211 1223334455556677787776 7889999999999999999998888887665543
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-05 Score=80.32 Aligned_cols=239 Identities=16% Similarity=0.144 Sum_probs=144.7
Q ss_pred hhHHHHH----HHHHhhhCCCc---EEEeCCHHHHHHHHHHHh---cc--CC---CEEEEcCCCccchHHHHHhhcccCC
Q 012321 210 PTTVVVE----EKMSALEGAES---TVIMASGMSASTVMLLAL---VP--AG---GHIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 210 p~~~~Le----e~lA~l~g~e~---~v~~~SG~aAi~~al~al---l~--pG---D~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
|..+.++ ..++.++++.. ...+++|++++.++.... .. .| ..++++..++. .++.....++
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~----a~eK~a~yf~ 191 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHA----AFEKAARYFE 191 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHH----HHHHHHhhEE
Confidence 4455554 44667777633 223455567755544332 11 12 23454444333 3445555567
Q ss_pred cEEEEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCc----cch
Q 012321 275 ITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLN----QKA 343 (466)
Q Consensus 275 i~v~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~-~gillIvD~t~a~~~~----~~p 343 (466)
++++.++. .|+..+.+.++++ |.+|+.+.|+-|+|.+-|+++|.++.-+ +++.+++|.+-+.++. ...
T Consensus 192 v~l~~V~~~~~~~~~D~~k~~~~i~eN-ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~ 270 (491)
T KOG1383|consen 192 VELREVPLDEGDYRVDPGKVVRMIDEN-TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNE 270 (491)
T ss_pred EEEEeeeccccceEecHHHHHHHhccc-eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCc
Confidence 77666653 3899999999985 9999999999999999999999999998 9999999999665433 111
Q ss_pred --hcc---CCcEEEeccccccccccCceEEEEE-eChHHH-HHHHHHHHHhCC----------Cch--HHHHHHHH--Hh
Q 012321 344 --LSL---GADLVLHSATKFIGGHNDVLAGSIS-GSGKLV-TQIRNLHHVLGG----------ALN--PNAAYLII--RG 402 (466)
Q Consensus 344 --l~~---gaDivv~S~sK~lgG~gdv~gG~vv-g~~eli-~~l~~~~~~~G~----------~ls--~~~A~l~l--rg 402 (466)
+++ |+--+..+.|||--.+.+ .|+++ .++++. .++......+|+ ..+ -..+|..+ -|
T Consensus 271 ~~fdFr~p~V~Sisa~~HKYGl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG 348 (491)
T KOG1383|consen 271 EEFDFRVPGVTSISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLG 348 (491)
T ss_pred cccccCCCCceeEeeccceeeeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhh
Confidence 222 233455678998543332 34554 444433 232222222221 111 23455443 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC-------CCCcchHHHHhhcCCcce
Q 012321 403 MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL-------KSHPEHHIATQQMTGFGG 456 (466)
Q Consensus 403 L~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL-------~s~p~~~l~~~~~~g~Gg 456 (466)
-+.....++++.++++.|.+.+++.+.+.-+.-|.. ..++.|++... |+.+|.
T Consensus 349 ~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~-l~~~GW 408 (491)
T KOG1383|consen 349 EEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDL-LRKKGW 408 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHH-HHhcCc
Confidence 667788899999999999999999877655544432 23555655433 344443
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-05 Score=78.55 Aligned_cols=206 Identities=15% Similarity=0.142 Sum_probs=127.3
Q ss_pred HHHhhhCC---CcEEEeCCHHHHH-HHHHHHhc--cC-----C-----CEE-EEcCCCccchHHHHHhhcccCC---cEE
Q 012321 218 KMSALEGA---ESTVIMASGMSAS-TVMLLALV--PA-----G-----GHI-VTTTDCYRKTRIFIETVLPKMG---ITA 277 (466)
Q Consensus 218 ~lA~l~g~---e~~v~~~SG~aAi-~~al~all--~p-----G-----D~V-Lv~~~~y~~t~~~~~~~l~~~g---i~v 277 (466)
++-++.|. .+.++.++|+-++ .++..+-- -| | +-| .+++.+|.+... ....+| -.+
T Consensus 149 km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~k----aAa~lg~gtd~c 224 (510)
T KOG0629|consen 149 KMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKK----AAAFLGLGTDHC 224 (510)
T ss_pred HHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHH----HHHHhccCCcee
Confidence 33444454 4789998998444 33332211 11 2 223 344566665432 222333 233
Q ss_pred EEeCC-----CCHHHHHHhccCCC-----ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchh---
Q 012321 278 TVIDP-----ADMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--- 344 (466)
Q Consensus 278 ~~vd~-----~D~e~Le~ai~~~~-----tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl--- 344 (466)
..++. .++++||+.|-..+ +-+|-...-+...|..-|++.|+++|++|+.|++||.+|+.+++....
T Consensus 225 ~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~ 304 (510)
T KOG0629|consen 225 IKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH 304 (510)
T ss_pred EEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh
Confidence 34442 36889998875322 334444334455688889999999999999999999999987653221
Q ss_pred -c---cCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHH---------------------HhCCCchHHHHHH
Q 012321 345 -S---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH---------------------VLGGALNPNAAYL 398 (466)
Q Consensus 345 -~---~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~---------------------~~G~~ls~~~A~l 398 (466)
- .-+|.|..+.||++|.+- -.+..+.+. .++++...... ..|...+.+.-|+
T Consensus 305 kl~Giera~SvtwnpHK~~gapl--qCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWl 382 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMGAPL--QCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWL 382 (510)
T ss_pred hccCccccCceeecHHHhhcCcc--hhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHH
Confidence 1 136889999999998764 234443333 23333221110 2344566777888
Q ss_pred HHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 399 IIR--GMKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 399 ~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
..+ |.+.++.++++..++|+++.+.|++.+.
T Consensus 383 mwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~ 415 (510)
T KOG0629|consen 383 MWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG 415 (510)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 764 6677889999999999999999998754
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.5e-05 Score=76.18 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhhh---CC----CcEEEeCCHH-HHHHHHHHHhccC--C----CEEEEcCCCccchHHHHHhhcccCCc
Q 012321 210 PTTVVVEEKMSALE---GA----ESTVIMASGM-SASTVMLLALVPA--G----GHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 210 p~~~~Lee~lA~l~---g~----e~~v~~~SG~-aAi~~al~all~p--G----D~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
-...+|++.|.+|+ |. ..-|++++|+ +.+++++.+|... . -+|+...|.|+...... ..++....
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s~~y 121 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDSRLY 121 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-BTTE
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-HhccccCc
Confidence 34557777777765 32 4678888887 8888888887543 1 26888888887644322 33443333
Q ss_pred EEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-hhccCCcEEEec
Q 012321 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-ALSLGADLVLHS 354 (466)
Q Consensus 276 ~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~-pl~~gaDivv~S 354 (466)
+.. -|... ....=+. .+-+=++++||||.|.+-. . +++.-+..+|.|-+|--|.... +...+-||.+++
T Consensus 122 ~w~-Gda~~---~~~~~~~-~~~IElVTSPNNPDG~lr~--~---V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT 191 (363)
T PF04864_consen 122 KWA-GDASN---FKNSDNP-SPYIELVTSPNNPDGQLRE--A---VLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFT 191 (363)
T ss_dssp EEE-EECCC---GTT-S-C-CGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEE
T ss_pred ccc-ccHHh---hccCCCC-CCeEEEEeCCCCCcccccc--h---hcCCCCcceeeeeeeecccccccCCCCCCceEEEE
Confidence 322 11111 1111011 2456678899999998632 1 2345567789999976554321 112345899999
Q ss_pred cccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHH
Q 012321 355 ATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPN 394 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~ 394 (466)
+||.= ||.+.+.||.+. ++++.+++..+......+.+-.
T Consensus 192 ~SK~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~d 231 (363)
T PF04864_consen 192 LSKLT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRD 231 (363)
T ss_dssp HHHHC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HH
T ss_pred Eeccc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHH
Confidence 99975 455556677655 5577788877665544444443
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=77.30 Aligned_cols=250 Identities=20% Similarity=0.207 Sum_probs=150.3
Q ss_pred hHHHHHHHHHhhhCCCcEEEe-CCHHHH---HHHHHHHhc-cCCC----EEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALEGAESTVIM-ASGMSA---STVMLLALV-PAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~~-~SG~aA---i~~al~all-~pGD----~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
....||+.|.++.|-+..-+. .||.+. =..++++.+ ..|+ .-+++...|+.... .....|.++..++
T Consensus 583 lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA----SA~MagmkvvpV~ 658 (1001)
T KOG2040|consen 583 LFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA----SAAMAGMKVVPVG 658 (1001)
T ss_pred HHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh----hHHhcCCEEEEee
Confidence 456788888888887766555 456532 233445543 3443 35777777877542 2334577777665
Q ss_pred C-----CCHHHHHHhccCC--CceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCC--CCccchhccCCcEE
Q 012321 282 P-----ADMEGLEAALNNN--NVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLV 351 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~--~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~--~~~~~pl~~gaDiv 351 (466)
. .|..+|++..+++ +..++++..|+. .|.. .++++++++.|+||.-|..|.+-.. --+.+|-+.|+|+.
T Consensus 659 ~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~ 737 (1001)
T KOG2040|consen 659 CDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVC 737 (1001)
T ss_pred ccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccce
Confidence 3 3778887766543 367889988984 3433 4699999999999999999998432 12468889999999
Q ss_pred Eecccccccccc---CceEEEEEeChHHHHHHHHHH----------H--------HhCCC--chHHHHHHHHHhhHHHHH
Q 012321 352 LHSATKFIGGHN---DVLAGSISGSGKLVTQIRNLH----------H--------VLGGA--LNPNAAYLIIRGMKTLHL 408 (466)
Q Consensus 352 v~S~sK~lgG~g---dv~gG~vvg~~eli~~l~~~~----------~--------~~G~~--ls~~~A~l~lrgL~tl~~ 408 (466)
--.+||+|.-+. +-.+|-|..++.+...|-..- . .+|+. +.---+|+-..|.+-|..
T Consensus 738 HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~ 817 (1001)
T KOG2040|consen 738 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKD 817 (1001)
T ss_pred eecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccch
Confidence 999999985221 112344433433332221100 0 11211 111234554445555544
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCC---------------cchHHHHhhc-CCc-ceEEEEEecee
Q 012321 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH---------------PEHHIATQQM-TGF-GGVVSFEVCVF 465 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~---------------p~~~l~~~~~-~g~-Ggl~sfel~~~ 465 (466)
--+-..-|+.++++.|+.|=++....--++-.| .--+++||.| -|| +..+|+-+.|+
T Consensus 818 as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gt 891 (1001)
T KOG2040|consen 818 ASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGT 891 (1001)
T ss_pred hhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCc
Confidence 444556689999999999866544333332211 1235788888 354 55566555544
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=78.17 Aligned_cols=137 Identities=20% Similarity=0.359 Sum_probs=100.2
Q ss_pred HHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhc
Q 012321 216 EEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292 (466)
Q Consensus 216 ee~lA~l~g~--e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai 292 (466)
+..++++.|- .++-++--|++|-.++.++. ..++.+.++...+|+.+...++.-.+.+|+++... |+++....
T Consensus 169 QTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~---~~~~~~~s- 244 (1001)
T KOG2040|consen 169 QTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS---DIKEADYS- 244 (1001)
T ss_pred HHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEec---CHHHhhcc-
Confidence 4456677774 46667778886655555443 45667899999999999988877777888886543 44444332
Q ss_pred cCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC-CCCCCccchhccCCcEEEeccccc
Q 012321 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF 358 (466)
Q Consensus 293 ~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t-~a~~~~~~pl~~gaDivv~S~sK~ 358 (466)
.+ .+..|++..|. --|.+.|.+++++.+++.|.++++--- .+--++..|.++|+||++.|...+
T Consensus 245 ~~-~v~gvlvQYP~-t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF 309 (1001)
T KOG2040|consen 245 SK-DVSGVLVQYPD-TEGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF 309 (1001)
T ss_pred cc-ceeEEEEEcCC-CCCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence 23 38899998887 469999999999999999987665432 222345678899999999998764
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=72.45 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=115.1
Q ss_pred HHHHHHHhhhCC-CcEEEe-CCHHHHHHHHHHHhccCCC---EEEEcCCCccchHHHHHhhcccCCcEEE----EeCC--
Q 012321 214 VVEEKMSALEGA-ESTVIM-ASGMSASTVMLLALVPAGG---HIVTTTDCYRKTRIFIETVLPKMGITAT----VIDP-- 282 (466)
Q Consensus 214 ~Lee~lA~l~g~-e~~v~~-~SG~aAi~~al~all~pGD---~VLv~~~~y~~t~~~~~~~l~~~gi~v~----~vd~-- 282 (466)
-+-..++.+.|+ ++.+.+ .+=+.-+..++.++.+|-. +|+...-.|++-+..++..++..|+.+. .+++
T Consensus 115 ~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePRE 194 (465)
T KOG3846|consen 115 PILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPRE 194 (465)
T ss_pred hhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccc
Confidence 345567777887 444444 4444556666777777653 6899999999877677666776676532 2221
Q ss_pred ----CCHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CccchhccCCcEEEecc
Q 012321 283 ----ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA 355 (466)
Q Consensus 283 ----~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~-~~~~pl~~gaDivv~S~ 355 (466)
...+++.+.|..+ ...+|++.-.+-.||...|+.+|.+.-+..|+++-.|-+++.+ +....-.+|+|+.+...
T Consensus 195 GEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCS 274 (465)
T KOG3846|consen 195 GEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCS 274 (465)
T ss_pred cccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEee
Confidence 1345566556432 3789999889999999999999997777789999999987754 44455578999999999
Q ss_pred ccccccccCceEEEEEeCh
Q 012321 356 TKFIGGHNDVLAGSISGSG 374 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~ 374 (466)
.||++.+.+-+||..+-.+
T Consensus 275 YKYlnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 275 YKYLNAGAGGIGGLFVHEK 293 (465)
T ss_pred ecccccCCCccceeeeehh
Confidence 9999866555788877654
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0046 Score=62.05 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=90.8
Q ss_pred EEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCCc-E---EEEeC----CCCHHHHHHhccCCCc
Q 012321 228 TVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGI-T---ATVID----PADMEGLEAALNNNNV 297 (466)
Q Consensus 228 ~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi-~---v~~vd----~~D~e~Le~ai~~~~t 297 (466)
.+-.-||+.|+.....-+ .-....|-++.|++......+ ++.|. + ..+.| ..|++.+...|+..+.
T Consensus 102 ~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if----~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe 177 (410)
T KOG1412|consen 102 GVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIF----EKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPE 177 (410)
T ss_pred ceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHH----HHcCCceeeeeeeecCCCceecHHHHHHHHhhCCC
Confidence 344457777766554322 233567999999998866544 34452 2 23333 3477877777754323
Q ss_pred e-EEEEeC-CCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccch----------hccCC-cEEEecccccccc
Q 012321 298 S-LFFTES-PTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGA-DLVLHSATKFIGG 361 (466)
Q Consensus 298 k-lV~les-PsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~p----------l~~ga-Divv~S~sK~lgG 361 (466)
. ++++.. .+||||.-.. ...|++..++++...+.|-+|-.....++ .+.|. -+|+.||.|-+|.
T Consensus 178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGl 257 (410)
T KOG1412|consen 178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGL 257 (410)
T ss_pred CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccc
Confidence 3 444433 3799997543 56788888899999999999643322111 12343 2889999999998
Q ss_pred ccCceEEE--EEeChHHHHH
Q 012321 362 HNDVLAGS--ISGSGKLVTQ 379 (466)
Q Consensus 362 ~gdv~gG~--vvg~~eli~~ 379 (466)
.+...|-+ ++-++..+..
T Consensus 258 YneRvGnltvv~~n~a~i~~ 277 (410)
T KOG1412|consen 258 YNERVGNLTVVVNNPAVIAG 277 (410)
T ss_pred ccccccceEEEecChhHHHH
Confidence 88765543 2334444433
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=64.03 Aligned_cols=207 Identities=15% Similarity=0.192 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhh----ccc-CCcE-EEEe
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETV----LPK-MGIT-ATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~----l~~-~gi~-v~~v 280 (466)
..++-.+...+.+-+-.-++++.||++|+.++++.. .+..| ||+.+..|.+.......+ +.. -++. .+++
T Consensus 87 ~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~V 165 (452)
T KOG1403|consen 87 ELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYV 165 (452)
T ss_pred HHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCcee
Confidence 344444555555555577889999999999988753 34444 555566666532211110 000 1111 1111
Q ss_pred ---CC---------------CC-----HHHHHHhccC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012321 281 ---DP---------------AD-----MEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI 328 (466)
Q Consensus 281 ---d~---------------~D-----~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gil 328 (466)
+. .| .+.+++.+++ ..+.+.+.|+-.+=.|.+.+ .+++++..|.+|.+
T Consensus 166 HVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv 245 (452)
T KOG1403|consen 166 HVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGV 245 (452)
T ss_pred EecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCe
Confidence 11 01 2334443321 13556666777666787775 57889999999999
Q ss_pred EEEeCCCCCC-------CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH----HHHHhCCCchHHHHH
Q 012321 329 VCIDGTFATP-------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----LHHVLGGALNPNAAY 397 (466)
Q Consensus 329 lIvD~t~a~~-------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~----~~~~~G~~ls~~~A~ 397 (466)
.|.||++..+ +.......-.|||+ +.|-+|-.- ..+.+++.+++.+.+.. +.+.+|+ +|..+.
T Consensus 246 ~IaDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGNGh--PVa~VattkeIA~Af~atgv~YFNTyGG--nPVsCA 319 (452)
T KOG1403|consen 246 CIADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNGH--PVAAVATTKEIAQAFHATGVEYFNTYGG--NPVSCA 319 (452)
T ss_pred EEeehhhhcccccchhhhhhhhhccccchhe--ecccCCCCC--eeeEEeccHHHHHHhccccceehhccCC--CchhHH
Confidence 9999995321 11222333357775 678776332 35788888998887764 3344555 455555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012321 398 LIIRGMKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 398 l~lrgL~tl~~R~e~~~~na~~La~~L~ 425 (466)
..+.-|+-++ -+..+++++++-++|.
T Consensus 320 v~laVm~v~e--~E~Lq~ha~~vG~~L~ 345 (452)
T KOG1403|consen 320 VGLAVMRVCE--DENLQEHAQQVGEKLE 345 (452)
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHHHHH
Confidence 5444444333 2344555555555443
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=60.40 Aligned_cols=226 Identities=19% Similarity=0.201 Sum_probs=127.3
Q ss_pred HHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC-----CCEEEEcCCCccchH
Q 012321 189 AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----GGHIVTTTDCYRKTR 263 (466)
Q Consensus 189 ~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~p-----GD~VLv~~~~y~~t~ 263 (466)
+++...+.+.+ .|+ ++-....|++.+.+.+|-+..+-+.-|-.|=..++..++++ |.+.++..+.|..|.
T Consensus 63 ~qwaamm~GDE---AYa--gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTT 137 (471)
T COG3033 63 KQWAAMMRGDE---AYA--GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTT 137 (471)
T ss_pred HHHHHHhccch---hhc--ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecch
Confidence 44555554432 355 44567899999999999877777777776666666556654 445566666666554
Q ss_pred HHHHhhcccCCcEEEE--e-------------CCCCHHHHHHhccC---CCceEEEEeCCCCCC-cccc---cHHHHHHH
Q 012321 264 IFIETVLPKMGITATV--I-------------DPADMEGLEAALNN---NNVSLFFTESPTNPF-LRCV---DVKLVSDL 321 (466)
Q Consensus 264 ~~~~~~l~~~gi~v~~--v-------------d~~D~e~Le~ai~~---~~tklV~lesPsNPt-G~v~---dl~~I~el 321 (466)
+.-.. ..|....- + ...|++.|++.|++ +++-.|++.-.+|.. |... +++++.++
T Consensus 138 r~h~~---~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~i 214 (471)
T COG3033 138 RGHIQ---INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEI 214 (471)
T ss_pred hHHHH---hcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHH
Confidence 33211 11211110 1 12378899988864 235566664445543 5544 57899999
Q ss_pred HHhcCCEEEEeCC-CCCC-Cc--cc---------------hhccCCcEEEeccccccccccCceEEEEEeChH----HHH
Q 012321 322 CHKKGAIVCIDGT-FATP-LN--QK---------------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----LVT 378 (466)
Q Consensus 322 a~~~gillIvD~t-~a~~-~~--~~---------------pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e----li~ 378 (466)
|++|++.++.|.+ |+.. ++ ++ .+. .+|-.+-|.-|-- +-. +||++..+++ +..
T Consensus 215 a~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~~~mS~KKD~--lvn-mGGfl~~~D~~~fDvy~ 290 (471)
T COG3033 215 AKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS-YADGCTMSAKKDG--LVN-MGGFLCFKDDSFFDVYE 290 (471)
T ss_pred HHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHh-hhhhheeeccccc--eec-cccEEEecCccHHHHHH
Confidence 9999999999988 3321 11 10 111 3677778887742 221 5899988765 555
Q ss_pred HHHHHHH------HhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012321 379 QIRNLHH------VLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 379 ~l~~~~~------~~G~~ls~~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~~ 427 (466)
.++.... ..|+...-....+ ..||+.- ...++...+..++|++.|++.
T Consensus 291 ~~~~~~V~~eG~~tYGgl~Grdmeal-AvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~ 346 (471)
T COG3033 291 ECRTLVVVQEGFPTYGGLAGRDMEAL-AVGLREGVNFDYLAHRVAQVQYLADGLEEA 346 (471)
T ss_pred HHHhheEeeccccccCcccchhHHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 5554322 2232222221222 2233321 112233334456788888875
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.032 Score=56.89 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=130.1
Q ss_pred CCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhh-hCC------CcEEE---eCCHH--HHHHHHHHHhccCC
Q 012321 182 AYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL-EGA------ESTVI---MASGM--SASTVMLLALVPAG 249 (466)
Q Consensus 182 t~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l-~g~------e~~v~---~~SG~--aAi~~al~all~pG 249 (466)
.|+++.....+....+..-.-.|-... ...++.+.-+++ +|. +.-++ .-||+ -.+.+-+++..-++
T Consensus 69 p~vL~~VrkAE~ql~~~~ldKEYlpI~--Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~ 146 (427)
T KOG1411|consen 69 PYVLPSVRKAEQQLASLSLDKEYLPIT--GLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPS 146 (427)
T ss_pred eeeeHHHHHHHHHHhhhcccchhcccc--chHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccc
Confidence 356666665555444433334555432 233444444443 332 22222 23555 44555555666678
Q ss_pred CEEEEcCCCccchHHHHHhhcccCCcEEEEe---C----CCCHHHHHHhccCCCc-eEEEE-eCCCCCCcccc---cHHH
Q 012321 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVI---D----PADMEGLEAALNNNNV-SLFFT-ESPTNPFLRCV---DVKL 317 (466)
Q Consensus 250 D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v---d----~~D~e~Le~ai~~~~t-klV~l-esPsNPtG~v~---dl~~ 317 (466)
..|.+++|+|+... .+.+..|+.+.++ + ..|.+.+.+.+.+... ..|++ ..-+||||.-. ..++
T Consensus 147 ~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~k 222 (427)
T KOG1411|consen 147 RDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEK 222 (427)
T ss_pred cceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHH
Confidence 99999999999854 3445556665443 3 2355554444433211 22332 34579999754 3678
Q ss_pred HHHHHHhcCCEEEEeCCCCCCCccch----------hccCCc-EEEeccccccccccCceEEE-EEe-ChHHHHHHH---
Q 012321 318 VSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGAD-LVLHSATKFIGGHNDVLAGS-ISG-SGKLVTQIR--- 381 (466)
Q Consensus 318 I~ela~~~gillIvD~t~a~~~~~~p----------l~~gaD-ivv~S~sK~lgG~gdv~gG~-vvg-~~eli~~l~--- 381 (466)
|.++.++.+.+-+.|-+|..+...+. .+.|.+ ++..|+.|-+|-.|...|.+ |++ +.+...++.
T Consensus 223 i~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQl 302 (427)
T KOG1411|consen 223 ISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQL 302 (427)
T ss_pred HHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHH
Confidence 99999999999999999754432111 123444 67899999999877654433 233 444444443
Q ss_pred -HHHHHhCCCchHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 382 -NLHHVLGGALNPNAAYLI----------IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 382 -~~~~~~G~~ls~~~A~l~----------lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+.+.+-++.+-..|.++ ..-+..+....+++...++.|.+.|+..
T Consensus 303 k~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~ 359 (427)
T KOG1411|consen 303 KILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKE 359 (427)
T ss_pred HHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcC
Confidence 333222222111111111 1123334444556666677788877764
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0077 Score=55.08 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=40.5
Q ss_pred CchhHHHHHHHHHhhhC--C---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccc
Q 012321 208 GNPTTVVVEEKMSALEG--A---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRK 261 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g--~---e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~ 261 (466)
....++++.+.+.+..| . .+.|++++| ++|+..++.+++.+||.|++++|.|++
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 34556777777777666 2 234555555 599999999999999999999999974
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.21 Score=51.44 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCH-HHHHHHHHHHhccCCCE--EEEcCCCccch-HHHHHhhcccCCc-EEEEe-
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASG-MSASTVMLLALVPAGGH--IVTTTDCYRKT-RIFIETVLPKMGI-TATVI- 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG-~aAi~~al~all~pGD~--VLv~~~~y~~t-~~~~~~~l~~~gi-~v~~v- 280 (466)
......++.+.++++.+ +.+++.+| +....++.+.++..+.. |.+ -.|... ......+.....+ .....
T Consensus 50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~--g~Ws~~a~~eA~~~~~~~~~~~~~~~~ 127 (365)
T COG1932 50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDT--GAWSEFAIKEAKKVGKQPKLIDARIEE 127 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEee--eehhHhHHHHHHHhcccccccccceec
Confidence 34566788888899863 35555444 47788888888865542 333 223221 1111111111111 11100
Q ss_pred ----CCCCHHHHHHhccCCCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCCCCccchhcc-CCcEEEec
Q 012321 281 ----DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATPLNQKALSL-GADLVLHS 354 (466)
Q Consensus 281 ----d~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d-l~~I~ela~~~gillIvD~t~a~~~~~~pl~~-gaDivv~S 354 (466)
...+++.+. +.++ ...|+++.=..-+|.-++ ...+. .+.++|+|.+-. .+.++++. ..|++..+
T Consensus 128 ~~~~~iP~~~~~~--~~~~-~ayv~~~~NeTi~Gv~v~~~p~~~-----~~~~~v~D~SS~--ilsr~iDvsk~dviyag 197 (365)
T COG1932 128 AGYGSIPDLSKWD--FSDN-DAYVHFCWNETISGVEVPELPDIG-----SDGLLVADASSA--ILSRPIDVSKYDVIYAG 197 (365)
T ss_pred cCccCCCChhhcc--cCCC-ccEEEEecCCcccceEccCCCCCC-----CCceEEEecccH--HhcCCCChhHcceEEEe
Confidence 112333332 3332 344555322223465443 22211 127899998743 22233332 46899999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHH-H-H--------HhC---CCchHHHHHHHHHhhHHH------HHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-H-H--------VLG---GALNPNAAYLIIRGMKTL------HLRVQQQNS 415 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~-~-~--------~~G---~~ls~~~A~l~lrgL~tl------~~R~e~~~~ 415 (466)
..|-+|+.| .++++.++++++++... . . .-| .+++.+.-|+....++++ +...++-.+
T Consensus 198 aQKnlGpaG---ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ 274 (365)
T COG1932 198 AQKNLGPAG---LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQA 274 (365)
T ss_pred hhhccCccc---eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887 48889999998887653 1 1 011 233444444444455554 344566778
Q ss_pred HHHHHHHHHHcCCCc
Q 012321 416 TALRMAKILEAHPKV 430 (466)
Q Consensus 416 na~~La~~L~~~p~V 430 (466)
+++.|.+++.+.+..
T Consensus 275 ka~~LY~~id~s~fy 289 (365)
T COG1932 275 KAQLLYDWIDKSDFY 289 (365)
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999998653
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=51.48 Aligned_cols=99 Identities=16% Similarity=0.264 Sum_probs=64.4
Q ss_pred CHHHHHHhccCCCce-EEEEeCCCC-CCcccc-cHHHHHHHHHhcCCEEEEeCCCCCCCc------cchhccC-CcEEEe
Q 012321 284 DMEGLEAALNNNNVS-LFFTESPTN-PFLRCV-DVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADLVLH 353 (466)
Q Consensus 284 D~e~Le~ai~~~~tk-lV~lesPsN-PtG~v~-dl~~I~ela~~~gillIvD~t~a~~~~------~~pl~~g-aDivv~ 353 (466)
|++.+++.+++.... ++.+.+.++ -.-+.. .+++|+.+|..|+++-+|.|+|+.... ....+.| +|.++.
T Consensus 142 dleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vq 221 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQ 221 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHH
Confidence 788888888764333 333322221 122333 489999999999999999999875321 1112233 588999
Q ss_pred ccccccccccCceEEEEEe--ChHHHHHHHHHHH
Q 012321 354 SATKFIGGHNDVLAGSISG--SGKLVTQIRNLHH 385 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg--~~eli~~l~~~~~ 385 (466)
|+-|-|--+ .||.++. ++..++.+.+...
T Consensus 222 sldknf~vp---vggaiia~fk~n~iq~iak~yp 252 (432)
T KOG3843|consen 222 SLDKNFMVP---VGGAIIAAFKDNFIQEIAKMYP 252 (432)
T ss_pred Hhhhcceee---cchhHhhHhHHHHHHHHHHhCC
Confidence 999999877 4777765 4567777665443
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.77 E-value=1.2 Score=45.95 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=50.0
Q ss_pred HHHHHHhccC-----CCceEEEEeCCCCCCcccc---c-HHHHHHHHHhcCCEEEEeCCCCC----CCc--cc--hhccC
Q 012321 285 MEGLEAALNN-----NNVSLFFTESPTNPFLRCV---D-VKLVSDLCHKKGAIVCIDGTFAT----PLN--QK--ALSLG 347 (466)
Q Consensus 285 ~e~Le~ai~~-----~~tklV~lesPsNPtG~v~---d-l~~I~ela~~~gillIvD~t~a~----~~~--~~--pl~~g 347 (466)
++++|+.|.+ ..+.+|++|......|.-. | ++.|.+++++||+.+||||++.. +-+ .. .+...
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 5566666643 1378999998887777653 2 78999999999999999999632 211 11 23334
Q ss_pred CcEEEeccccccc
Q 012321 348 ADLVLHSATKFIG 360 (466)
Q Consensus 348 aDivv~S~sK~lg 360 (466)
.|+|. |||-|-
T Consensus 335 pD~vT--FSKK~q 345 (484)
T KOG1405|consen 335 PDVVT--FSKKFQ 345 (484)
T ss_pred cccee--hhhhhh
Confidence 67776 456554
|
|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.6 Score=37.31 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=61.0
Q ss_pred HHHHHhhcccCCcEEEEeCCC-CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCC
Q 012321 263 RIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL 339 (466)
Q Consensus 263 ~~~~~~~l~~~gi~v~~vd~~-D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~ 339 (466)
...+...+++.|.++.++|.. +.+++.+.+.+.++++|.+.... +.......++++..|+. ++.+++=+.+.+..
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence 344556678889999988754 46888777765568899885543 34445567888888776 78999988776554
Q ss_pred ccchhc--cCCcEEEe
Q 012321 340 NQKALS--LGADLVLH 353 (466)
Q Consensus 340 ~~~pl~--~gaDivv~ 353 (466)
....+. .++|.++.
T Consensus 95 ~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 95 PEEILREYPGIDYVVR 110 (121)
T ss_dssp HHHHHHHHHTSEEEEE
T ss_pred hHHHhccCcCcceecC
Confidence 444443 57887664
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=82.28 E-value=8.4 Score=32.95 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc---CCEEEEeCCCCCC
Q 012321 263 RIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK---GAIVCIDGTFATP 338 (466)
Q Consensus 263 ~~~~~~~l~~~gi~v~~vd~-~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~---gillIvD~t~a~~ 338 (466)
..++...++..|.++.+... ..++++.+.+.+.++++|.++.-. +....++.++.+.+++. ++.+++=......
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 34555677888999877653 356777777766568899885442 23345677888888775 4666665554333
Q ss_pred CccchhccCCcEEEecc
Q 012321 339 LNQKALSLGADLVLHSA 355 (466)
Q Consensus 339 ~~~~pl~~gaDivv~S~ 355 (466)
........|+|.++...
T Consensus 94 ~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 94 DFKFLKEIGVDAYFGPA 110 (119)
T ss_pred hHHHHHHcCCeEEECCH
Confidence 22334456888777643
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 466 | ||||
| 1qgn_A | 445 | Cystathionine Gamma-Synthase From Nicotiana Tabacum | 1e-169 | ||
| 3mkj_A | 398 | Methionine Gamma-Lyase From Citrobacter Freundii Wi | 9e-63 | ||
| 3jw9_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 1e-61 | ||
| 3jwa_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 1e-61 | ||
| 2rfv_A | 398 | High Resolution Structure Of L-Methionine Gamma-Lya | 4e-61 | ||
| 1y4i_A | 398 | Crystal Structure Of Citrobacter Freundii L-Methion | 1e-60 | ||
| 3e6g_A | 400 | Crystal Structure Of Xometc, A Cystathionine C-Lyas | 7e-54 | ||
| 1pg8_A | 398 | Crystal Structure Of L-Methionine Alpha-, Gamma-Lya | 6e-52 | ||
| 3vk2_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 1e-51 | ||
| 1gc0_A | 398 | Crystal Structure Of The Pyridoxal-5'-Phosphate Dep | 3e-51 | ||
| 3aej_A | 389 | Reaction Intermediate Structure Of Entamoeba Histol | 6e-51 | ||
| 3acz_A | 389 | Crystal Structure Of Entamoeba Histolytica Methioni | 3e-50 | ||
| 3ndn_A | 414 | Crystal Structure Of O-Succinylhomoserine Sulfhydry | 5e-49 | ||
| 1ibj_A | 464 | Crystal Structure Of Cystathionine Beta-Lyase From | 1e-48 | ||
| 2nmp_A | 403 | Crystal Structure Of Human Cystathionine Gamma Lyas | 3e-48 | ||
| 3elp_B | 410 | Structure Of Cystationine Gamma Lyase Length = 410 | 3e-48 | ||
| 1e5e_A | 404 | Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin | 8e-48 | ||
| 3qhx_A | 392 | Crystal Structure Of Cystathionine Gamma-Synthase M | 9e-47 | ||
| 1pff_A | 331 | Crystal Structure Of Homocysteine Alpha-, Gamma-Lya | 4e-42 | ||
| 1cs1_A | 386 | Cystathionine Gamma-Synthase (Cgs) From Escherichia | 5e-42 | ||
| 1n8p_A | 393 | Crystal Structure Of Cystathionine Gamma-lyase From | 7e-41 | ||
| 1cl2_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 8e-34 | ||
| 2fq6_A | 415 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 1e-33 | ||
| 1cl1_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 5e-33 | ||
| 2ctz_A | 421 | Crystal Structure Of O-Acetyl Homoserine Sulfhydryl | 2e-32 | ||
| 3ri6_A | 430 | A Novel Mechanism Of Sulfur Transfer Catalyzed By O | 6e-31 | ||
| 2cb1_A | 412 | Crystal Structure Of O-Actetyl Homoserine Sulfhydry | 2e-29 |
| >pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445 | Back alignment and structure |
|
| >pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398 | Back alignment and structure |
|
| >pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398 | Back alignment and structure |
|
| >pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398 | Back alignment and structure |
|
| >pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398 | Back alignment and structure |
|
| >pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400 | Back alignment and structure |
|
| >pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398 | Back alignment and structure |
|
| >pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398 | Back alignment and structure |
|
| >pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389 | Back alignment and structure |
|
| >pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389 | Back alignment and structure |
|
| >pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414 | Back alignment and structure |
|
| >pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464 | Back alignment and structure |
|
| >pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403 | Back alignment and structure |
|
| >pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410 | Back alignment and structure |
|
| >pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404 | Back alignment and structure |
|
| >pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392 | Back alignment and structure |
|
| >pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386 | Back alignment and structure |
|
| >pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393 | Back alignment and structure |
|
| >pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395 | Back alignment and structure |
|
| >pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415 | Back alignment and structure |
|
| >pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395 | Back alignment and structure |
|
| >pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421 | Back alignment and structure |
|
| >pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430 | Back alignment and structure |
|
| >pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 464 bits (1197), Expect = e-162
Identities = 292/366 (79%), Positives = 326/366 (89%), Gaps = 6/366 (1%)
Query: 102 SAAATAASAAPAPPAPVEITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSL 156
+ A AA+AA A APV+ T ++ + +NVQ ++L +K ASFL+SDGS+
Sbjct: 2 AKAVDAAAAAAAAIAPVDTTVVNEDVALVENETCNDQNVQFDSLPSMK-YASFLNSDGSV 60
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+E
Sbjct: 61 AIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLE 120
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
EK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGIT
Sbjct: 121 EKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGIT 180
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
ATVIDPAD+ LE ALN V+LFFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFA
Sbjct: 181 ATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA 240
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAA 396
TPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG KLV++IRNLHH+LGGALNPNAA
Sbjct: 241 TPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAA 300
Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
YLIIRGMKTLHLRVQQQNSTALRMA+ILEAHPKV+ V+YPGL+SHPEHHIA +QMTGFGG
Sbjct: 301 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG 360
Query: 457 VVSFEV 462
VSFEV
Sbjct: 361 AVSFEV 366
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-120
Identities = 118/309 (38%), Positives = 185/309 (59%), Gaps = 5/309 (1%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +
Sbjct: 12 QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 69
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
E+K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 70 EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 129
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF
Sbjct: 130 NVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 188
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
+P Q+ L LGAD+V+HS TK+I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 248
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+
Sbjct: 249 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSL 308
Query: 454 FGGVVSFEV 462
GG++SFE+
Sbjct: 309 PGGIISFEI 317
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-119
Identities = 83/309 (26%), Positives = 149/309 (48%), Gaps = 6/309 (1%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTVVV 215
++AG A+ + + S+ F + + YGR G T +
Sbjct: 30 LVNAGRSKKYT--LGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSL 87
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
++ M LEG V+ G +A +LA + G H++ T Y ++ F +L K+G+
Sbjct: 88 QQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDG 333
T + DP + L N + F ESP + + DV + AI+ ID
Sbjct: 148 TTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393
T+A + KAL G D+ + +ATK++ GH+D + G+ + + Q+R +++G ++
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDA 266
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
+ AY+ RG++TL +R++Q + ++L++A+ L HP+V RV++P L H + TG
Sbjct: 267 DTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTG 326
Query: 454 FGGVVSFEV 462
G+ SF +
Sbjct: 327 SSGLFSFVL 335
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-119
Identities = 108/310 (34%), Positives = 161/310 (51%), Gaps = 6/310 (1%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+ +H V + P+ TS + F T + D + Y R GNPT
Sbjct: 7 TTTLLHPKGDH----VLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVE 62
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
EE + ++EGA + SGM A + LA + G H++ Y T LP+
Sbjct: 63 QFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF 122
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
GI +ID +D+E ++AA N + + ESP NP + D+K ++ +CH++GA + +D
Sbjct: 123 GIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDA 181
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
TF +P K L LGAD+ LHS +K+I GH DV+ G S + I+ G +
Sbjct: 182 TFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA 241
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
P A+L RGMKTL +R+Q L++AK LE H K+ +V++PGL+S P H IA +QMT
Sbjct: 242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT 301
Query: 453 GFGGVVSFEV 462
G+G FE+
Sbjct: 302 GYGSTFLFEM 311
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-119
Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 5/309 (1%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
AIH G A+ PV T+ + F +A Y R NPT ++
Sbjct: 13 RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
E +M++LEG E+ + +ASGM A T L L+ G ++ Y T F+ + + G+
Sbjct: 71 EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+D AD++ LEAA+ + + ESP NP + D+ V+ + K GA V +D T+
Sbjct: 131 KLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 189
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
TP Q+ L LGADLV+HSATK++ GH D+ AG + GS LV +IR L + G L+P
Sbjct: 190 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 249
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
+ A L++RG+KTL+LR+ + + A +A+ L P+V+ +HYPGL S P++ +A QQM+
Sbjct: 250 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 309
Query: 454 FGGVVSFEV 462
GG+++FE+
Sbjct: 310 PGGMIAFEL 318
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-118
Identities = 104/308 (33%), Positives = 160/308 (51%), Gaps = 5/308 (1%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
+ + G + + TS Y + A + Y RYGNPT V
Sbjct: 30 VGVRGGMLRSG---FEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVF 86
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
EE++ +EGA + ASGM+A L AL+ AG +V + + +LP+ G+
Sbjct: 87 EERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+D D+ E AL+ F E+P+NP VD+ V++L H GA V +D F
Sbjct: 147 QTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGALNPN 394
ATPL Q+ LG D+V++S TK I G VL G+I G + + L G A++
Sbjct: 206 ATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAF 265
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
A+++++G++TL +RVQ N++A R+A+ L HP V+ V YP L SHP++ +A +QM+G
Sbjct: 266 NAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGG 325
Query: 455 GGVVSFEV 462
G VV+F +
Sbjct: 326 GTVVTFAL 333
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-118
Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 7/310 (2%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
IHA + + A P+ TS + F + + + + + Y R GNPT +
Sbjct: 11 ACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNL 67
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
E K++ LE E+ V +SGM A +L ++ AG H+++ Y T E L K GI
Sbjct: 68 EGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI 127
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGT 334
I+ A ++ + N + + E+P NP L+ +D++ V H + G +V D T
Sbjct: 128 QVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNT 186
Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALN 392
F +P+ + G D+V+HSATK+I GH DV+AG I G L+ QIR + + G ++
Sbjct: 187 FCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS 246
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
P+ A+LI RG+ TL++R++ ++ A+++A+ L++HP V++V+YPG + H H IA +QM
Sbjct: 247 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR 306
Query: 453 GFGGVVSFEV 462
+G +++F +
Sbjct: 307 MYGSMITFIL 316
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-115
Identities = 115/310 (37%), Positives = 168/310 (54%), Gaps = 11/310 (3%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+ AIH+G R T A+ P+ +S + L R +EY R GNPT
Sbjct: 19 ATRAIHSGYRPDP--ATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRT 69
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+E ++A+E A +SGM+A+ L A++ G H+V D Y T I+ V
Sbjct: 70 ALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW 129
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
+ T + AD++ + AA+ L + E+PTNP L D+ ++ L A V +D
Sbjct: 130 NVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
TFA+P Q+ LSLGAD+VLHS TK+IGGH+DV+ G++ + + L L + G
Sbjct: 189 TFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPG 248
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
P AYL +RG+KTL LR+Q+ + A +A+ L HP + V YPGL SHP H +A +QM
Sbjct: 249 PFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR 308
Query: 453 GFGGVVSFEV 462
GFGG+VS +
Sbjct: 309 GFGGMVSVRM 318
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-114
Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 12/310 (3%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
++A+ +G + P+ +S Y F E + +Y R GNPT
Sbjct: 6 ATIAVRSGLNDDE--QYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRD 55
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
VV+ ++ LEG V+ +GMSA ++ + G +V DCY + +++ +
Sbjct: 56 VVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG 115
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
+D D + L AAL L ESP+NP LR VD+ + L + GA+ +D
Sbjct: 116 CYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDN 174
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
TF +P Q L+LGADLVLHS TK++ GH+DV+AG + +VT++ + +G
Sbjct: 175 TFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGG 234
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
+YL++RG++TL R++ A + K L+ P VK++++P L + H IA +Q
Sbjct: 235 AFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK 294
Query: 453 GFGGVVSFEV 462
GFG ++SFE+
Sbjct: 295 GFGAMLSFEL 304
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-110
Identities = 116/312 (37%), Positives = 178/312 (57%), Gaps = 15/312 (4%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+LAIH G+ T A+ P+ TS Y E FEY R NPT
Sbjct: 21 ATLAIHGGQSPDP--STGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRF 70
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK- 272
E ++ALEG ASGM+A++ ++ L+ AG H+V D Y T E V +
Sbjct: 71 AYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
G+ + +D D +AA+ + + + E+PTNP L+ VD+ ++ + K G + +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS--ISGSGKLVTQIRNLHHVLGGA 390
TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G + + +L Q+ L + +GG
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248
Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450
P ++L +RG+KTL LR++ AL +A+ LE HP +++V YPGL SHP+H +A +Q
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308
Query: 451 MTGFGGVVSFEV 462
M+GFGG+VS +
Sbjct: 309 MSGFGGIVSIVL 320
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-110
Identities = 103/311 (33%), Positives = 180/311 (57%), Gaps = 13/311 (4%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+ AIH G+ + A+ P+ ++ + + + FEY R GNPT
Sbjct: 20 ATQAIHVGQD-PEQWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRN 70
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+E+ ++AL+GA+ + ASG++A+ + L+ AG I+ D Y T + V +
Sbjct: 71 CLEKAVAALDGAKYCLAFASGLAATVT-ITHLLKAGDQIICMDDVYGGTNRYFRQVASEF 129
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCID 332
G+ + +D + ++ LEAA+ L + E+PTNP + +D++ + + HK G I+ +D
Sbjct: 130 GLKISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD 188
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 391
TF +P Q+ L+LGAD+ ++SATK++ GH+DV+ G +S + + L ++R L + LG
Sbjct: 189 NTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVP 248
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
+P YL RG+KTLH+R+++ + +A+ LE++P V++V YPGL SHP+H + +Q
Sbjct: 249 SPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQC 308
Query: 452 TGFGGVVSFEV 462
TG G+V+F +
Sbjct: 309 TGCTGMVTFYI 319
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464 | Back alignment and structure |
|---|
Score = 328 bits (844), Expect = e-109
Identities = 104/322 (32%), Positives = 175/322 (54%), Gaps = 18/322 (5%)
Query: 142 DLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
++K EAS +L ++ + DA++TP+ T+ + E
Sbjct: 80 NIKEEASV----STLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGP 124
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
++Y R GNPT +E ++ L+ A+ SGM+A + + L+ G IV D Y
Sbjct: 125 YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGG 183
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
+ + V+P+ G+ ++ ++ + AA+ L + ESPTNP + D++ +S++
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEM 242
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQI 380
H +GA+V +D + +P+ + L LGAD+V+HSATKFI GH+DV+AG ++ G+ L ++
Sbjct: 243 AHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302
Query: 381 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
L + G L P +L +RG+KT+ LR+++Q A ++A L +HP+VK+V+Y GL
Sbjct: 303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPD 362
Query: 441 HPEHHIATQQMTGFGGVVSFEV 462
HP HH+ Q G G V SF
Sbjct: 363 HPGHHLHFSQAKGAGSVFSFIT 384
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 314 bits (808), Expect = e-104
Identities = 102/317 (32%), Positives = 169/317 (53%), Gaps = 21/317 (6%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+ AIHAGE + V ++ P+ ++ + A ++EY R NP
Sbjct: 9 ATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPANP-------IGTYEYSRSQNPNRE 58
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+E ++ALE A+ + +SG + + +L +P G H V+ D Y T + V
Sbjct: 59 NLERAVAALENAQYGLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAH 117
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IV 329
G+ + + + L + N L + E+PTNP L+ D++ V+DL K A I+
Sbjct: 118 GVETSFTN-DLLNDLPQLIKEN-TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175
Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLG 388
+D TF +P L+ GAD+V+HSATK+I GH+DV+ G ++ + K L +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235
Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIA 447
+P A+L RG+KTLHLRV+Q +A ++A+ L A + V V+YPGLK+HP + +
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295
Query: 448 TQQMTGF--GGVVSFEV 462
+Q GG++SF +
Sbjct: 296 LKQHRDALGGGMISFRI 312
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = e-102
Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 4/252 (1%)
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+E K++ LE AE+ ASGM A + + AG H+++ Y T E L K
Sbjct: 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCID 332
G+ ID A +E L N + + E+P NP L+ +D++ K K +V +D
Sbjct: 62 GVEVDFIDMAVPGNIEKHLKPN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGA 390
TFA+P+ L LG D+V+HSATK+I GH DV+AG + ++ +++ + + G
Sbjct: 121 NTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAI 180
Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450
++P+ A+LI RG TL +RV++ A ++A+ L H VK+V+YPGL HP H IA +Q
Sbjct: 181 ISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240
Query: 451 MTGFGGVVSFEV 462
M FG +++F+V
Sbjct: 241 MKMFGSMIAFDV 252
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 1e-81
Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 38/335 (11%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
A+H + V A+ TPV + +A+ F+ + A++ + Y R NPT
Sbjct: 30 RALHVPKAKRD--VHGALRTPVYDNAAFEFENSDEIAQVSLGRA---LGHVYSRSSNPTV 84
Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
+E+++ L GA + + SGM+A + +L L AG +VTT + T + LP
Sbjct: 85 EDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS 144
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
GI +D D +E A + L F E+ +NP L+ D++ +S + H KG + +D
Sbjct: 145 FGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD 203
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 376
T P +A LG D+ + S+TKFI G + G + G
Sbjct: 204 TTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG 263
Query: 377 ---------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427
+N LG +L+P+ AYL G++T+ LR+++ A +A L +
Sbjct: 264 PMAFLYKARKEVFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSI 319
Query: 428 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
P+VK V++P L P + IA +Q G +++FE+
Sbjct: 320 PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFEL 354
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 2e-76
Identities = 98/343 (28%), Positives = 155/343 (45%), Gaps = 49/343 (14%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
LA+ AG A+ P+ +AY FK E E + Y R +PT
Sbjct: 6 LAVLAGLPEDP---HGAVGLPIYAVAAYGFKTLEEGQERFATGE----GYVYARQKDPTA 58
Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
+EE++ ALEGA V++ASG +A+ LLAL+ G +V + +T VL
Sbjct: 59 KALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
MG+T +DP + E + AL + F E+ NP L D++ ++ L + G + +D
Sbjct: 119 MGVTVRYVDP-EPEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD 176
Query: 333 GTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------------- 376
TF A + L+ GA +V+ S TK+ GH VL G++
Sbjct: 177 NTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236
Query: 377 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
+ G AL+P AYL+ +G++T+ LRV + + TA
Sbjct: 237 QIPWEALRARCFPERVRTLGLSL----CGMALSPFNAYLLFQGLETVALRVARMSETARF 292
Query: 420 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
+A+ L+ HPKVK + YPGL P H A + + G +++ ++
Sbjct: 293 LAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL 335
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 4e-74
Identities = 101/349 (28%), Positives = 155/349 (44%), Gaps = 52/349 (14%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
L +HAG T + P+ T++Y FK A L KE Y R NPT
Sbjct: 6 LQLHAGYEPEP--TTLSRQVPIYPTTSYVFKSPEHAANLFALKE---FGNIYSRIMNPTV 60
Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
V+E++++ALEG ++ + ASG +A + L L AG +IV+T + Y T + L +
Sbjct: 61 DVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR 120
Query: 273 MGITATVIDPADM-EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
+GI + E A + ++ ES NP L D++ ++ +KG + +
Sbjct: 121 LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIV 179
Query: 332 DGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-------------- 376
D TF + L+ GA LV HS TK++GGH V+AG+I G
Sbjct: 180 DNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239
Query: 377 ----------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
V +R+ G AL P A++++ GM+TL LR ++
Sbjct: 240 PGYHGLRLTEAFGELAFIVKARVDGLRD----QGQALGPFEAWVVLLGMETLSLRAERHV 295
Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEV 462
L +A L P+V V+YPGL HP H A + G V++F +
Sbjct: 296 ENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGL 344
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-62
Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 21/282 (7%)
Query: 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 258
+ Y G T V + E + SG A + L ++ G ++ T
Sbjct: 57 TTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGK 116
Query: 259 Y-------RKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTESP- 305
R + I + D E + AA+++N + +
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN-TKMIGIQRSK 175
Query: 306 ---TNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359
T P +K + K +V +D + + Q+ +GADL+ S K
Sbjct: 176 GYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNP 235
Query: 360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
GG G I G + V G A+ ++ M AL+
Sbjct: 236 GGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALK 295
Query: 420 MAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
A A K+ P + I + Q +++F
Sbjct: 296 GAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAF 337
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 6e-56
Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 31/286 (10%)
Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 253
+ Y G + V + E A +G A L + ++
Sbjct: 68 GYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPY 127
Query: 254 -TTTDCYRKTRIFIETVLPKMGITATVID----PADMEGLEAALN-NNNVSLFFTESPTN 307
T D L + G+ ++D D+ ++ L ++++ L + T
Sbjct: 128 DTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTG 187
Query: 308 ----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLNQKA-LSLGADLVLHSATKFIG 360
LR ++ + + IV +D + + +K +GAD++ S K IG
Sbjct: 188 YGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIG 247
Query: 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420
G G I+G + VTQ V G + + ++R + A++
Sbjct: 248 GGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKG 307
Query: 421 AKILEAHPKVKRVHYPGLKSHPEHH------IATQQMTGFGGVVSF 460
A ++ G P+++ I + ++ F
Sbjct: 308 AVFCARIMEL-----AGFDVLPKYNDKRTDIIQAIKFNDEKKLIDF 348
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 1e-55
Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 34/288 (11%)
Query: 194 FKEKRRASFEYGRYGNPTTVVVEEKMSAL-------EGAESTVIMASGMSASTVMLLALV 246
F + Y + EK++ + + V SA +LAL
Sbjct: 40 FLIDEKDKALLNTYIGSS--YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK 97
Query: 247 PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 306
P I + I + + A + + + ++ + + T S
Sbjct: 98 P-KKVIHYLPELPGHPSIERSCKI----VNAKYFESDKVGEILNKIDKD-TLVIITGSTM 151
Query: 307 N-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG 360
+ + + K V + K AIV +D + AL LGADLV+ S K +
Sbjct: 152 DLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 211
Query: 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALR 419
G G ++G +LV +I G P I R +K +L R+++ A
Sbjct: 212 GP---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 268
Query: 420 MA----KILEAHPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
+ L K + + P + + + +
Sbjct: 269 FDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVY----KDDTINI 312
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 6e-51
Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 26/279 (9%)
Query: 187 KTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV 246
+ + + + + YG G + V ++ E A +G A L +
Sbjct: 53 QEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL 112
Query: 247 PAGGHIV--------TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALN 293
G ++ T D T L + GI +D ++E +E L
Sbjct: 113 RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK 172
Query: 294 NN-NVSLFFTESPTN----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLN-QKALS 345
+ +++L + T L D+K + D +K I +D + ++ ++
Sbjct: 173 EDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD 232
Query: 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT 405
+GADL+ S K IGG G ++G+ + + V G + + ++R M
Sbjct: 233 VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQ 292
Query: 406 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 444
+ AL+ A + + G + P++
Sbjct: 293 GLFLAPHISMEALKGAILCSRI-----MELAGFEVMPKY 326
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 42/270 (15%), Positives = 77/270 (28%), Gaps = 37/270 (13%)
Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 253
+ Y G T V + E A + SG A + +L ++ ++
Sbjct: 53 GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112
Query: 254 -TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTES--- 304
T + + + L I + + D + + + S
Sbjct: 113 DTLEEIVGIRKQGQGS-LKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGY 171
Query: 305 PTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGG 361
P +K + IV +D + + Q+ +GAD++ S K GG
Sbjct: 172 ADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGG 231
Query: 362 HNDVLAGSISGSGKLVTQIRN------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNS 415
G I+G LV + G +L + +G Q
Sbjct: 232 GLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFFLAPHVTAQAIK 289
Query: 416 TALRMAKILEAHPKVKRVHYPGLKSHPEHH 445
A A +L G+++ P
Sbjct: 290 GARFTAAMLAEF---------GVEADPVWD 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 54/452 (11%), Positives = 119/452 (26%), Gaps = 148/452 (32%)
Query: 62 RFPPNFV-R-QLSTKARRNCSNIGVAQIVAASWSNSV----GSGSNSAAATAASAAP--- 112
F V R Q K R+ + A+ V + GSG A +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGVLGSGKTWVALDVCLSYKVQC 178
Query: 113 APPAPVE-ITSG---DDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAG-ERLGRG 167
+ + +++ L+ + + + + + SS+ L IH+ L R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRL 237
Query: 168 ----------IVTDAITTPVVNTSAYFFKKTAELIDFKEK-----RRAS-FEYGRYGNPT 211
+V + K + K R ++ T
Sbjct: 238 LKSKPYENCLLVLLNVQNA----------KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 212 TVVVEEKMSALEGAESTVIMAS--GMSASTV---------MLLALVPAGGHI-VTTTDCY 259
+ ++ L E ++ + L+++ + T D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGL--EAALNNNNV-------SLFFTESPTNPFL 310
+ + + + + + V++PA+ + ++ + SL + + +
Sbjct: 348 KH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--- 402
Query: 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI 370
DV +V + HK + K ++
Sbjct: 403 ---DVMVVVNKLHKYSLVEK---------QPKESTIS----------------------- 427
Query: 371 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 430
+ + L L+V+ +N AL I++ +
Sbjct: 428 ------------IPSIY------------------LELKVKLENEYALH-RSIVDHYNIP 456
Query: 431 KRVHYPGLK---------SHPEHHIATQQMTG 453
K L SH HH+ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 32/199 (16%), Positives = 55/199 (27%), Gaps = 54/199 (27%)
Query: 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA 343
D E E ++ F + F+ D K V D+ K + + K
Sbjct: 8 DFETGEHQYQYKDILSVFED----AFVDNFDCKDVQDM--PKSILS--KEEIDHIIMSKD 59
Query: 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM 403
G + L L Q + + L N +L M
Sbjct: 60 AVSGTLRLF-----------WTL---------LSKQEEMVQKFVEEVLRINYKFL----M 95
Query: 404 KTLHLRVQQQNSTALRMAKILEAH----------PK--VKRVH-YPGLKSH-----PEHH 445
+ +Q ++ +E K V R+ Y L+ P +
Sbjct: 96 SPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 446 IATQQMTGFG-GVVSFEVC 463
+ + G G V+ +VC
Sbjct: 153 VLIDGVLGSGKTWVALDVC 171
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 16/158 (10%)
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+ ++ G + + A ++ +L +V +C+ + + E + G
Sbjct: 59 IHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE----RAG 114
Query: 275 ITATVIDPAD-------MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCH 323
+ ++ D E + V L P + DVK ++ +C
Sbjct: 115 LNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS 174
Query: 324 KKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG 360
+ + ++G +A + +GAD ++ S K +
Sbjct: 175 EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-05
Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 38/182 (20%)
Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------I 264
E+ + + GA+ + + G S S ++ A + +V +C++ +
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270
Query: 265 FIETVLPKMGITATVIDPADM--EGLEAALNNN---------NVSLFFTESPTNPFLRCV 313
++ + GI I P +M E L+ ++ + S + T C
Sbjct: 271 YMVPSRNRYGIIGP-IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCY 328
Query: 314 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 359
+ K DL K + D +A + HS K +
Sbjct: 329 NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL 388
Query: 360 GG 361
Sbjct: 389 NA 390
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 27/171 (15%)
Query: 209 NPTTVVVE-EKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR--- 263
+P V+++ K + +G ++ ++ + G I+ + ++
Sbjct: 54 HPEEVILKSMKQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL 113
Query: 264 -------IFIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV 315
FIET P V + LNN+ L P + +V
Sbjct: 114 DISQQEGHFIETHQSPLTNHYNKV--------NLSRLNNDGHKLVVLTYPN-YYGETFNV 164
Query: 316 KLVSDLCHKKGAIVCID---GTFAT--PLNQKALSLGADLVLHSATKFIGG 361
+ V H+ V ID G L+ AD V+ S K +
Sbjct: 165 EEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPA 215
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 29/173 (16%)
Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYR----------KTRI 264
E+ ++ + A+ + ++ +G S + ++ + PAG I+ +C++ T I
Sbjct: 201 EQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI 260
Query: 265 FIETVLPKMGITATVIDPADMEG------LEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318
+ GI I ++ + ++ N + T + +
Sbjct: 261 YFRPTRNAYGI-LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFI 318
Query: 319 SDLCHKKGAIV-CIDGTFA---------TPLNQKALSLGADLVLHSATKFIGG 361
K + ++ + S K +
Sbjct: 319 KKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA 371
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 23/182 (12%), Positives = 48/182 (26%), Gaps = 37/182 (20%)
Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------- 263
E+ + + A+ T + G S + + ALV G ++ + ++
Sbjct: 179 EKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238
Query: 264 IFIETVLPKMGITATVIDPADME----------GLEAALNNNNVSLFFTESPTNPFLRCV 313
++++T G + D E E A L + T
Sbjct: 239 VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIY 297
Query: 314 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 359
+ V + D + ++ +V+ S K
Sbjct: 298 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ 357
Query: 360 GG 361
G
Sbjct: 358 AG 359
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 100.0 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 100.0 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 100.0 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 100.0 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 100.0 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 100.0 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 100.0 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 100.0 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 100.0 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 100.0 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 100.0 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 100.0 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 100.0 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 100.0 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 100.0 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 100.0 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 100.0 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 100.0 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.95 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.93 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.92 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.92 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.92 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.92 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.92 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.92 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.92 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.92 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.91 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.91 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.91 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.91 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.91 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.91 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.91 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.91 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.91 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.91 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.9 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.9 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.9 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.9 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.9 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.9 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.9 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.9 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.9 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.9 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.9 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.9 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.9 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.9 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.9 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.9 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.89 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.89 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.89 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.89 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.89 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.89 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.89 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.89 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.89 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.89 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.89 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.89 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.89 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.89 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.89 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.89 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.89 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.89 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.89 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.89 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.88 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.88 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.88 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.88 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.88 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.88 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.88 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.88 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.88 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.88 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.88 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.88 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.88 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.87 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.87 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.87 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.87 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.87 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.87 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.87 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.87 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.87 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.87 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.87 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.87 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.87 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.86 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.86 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.86 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.86 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.86 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.86 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.86 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.86 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.86 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.86 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.86 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.86 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.86 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.86 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.86 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.85 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.85 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.85 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.85 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.85 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.85 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.85 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.84 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.84 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.84 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.84 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.84 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.84 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.84 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.84 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.84 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.84 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.83 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.83 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.83 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.83 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.83 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.83 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.83 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.83 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.83 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.83 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.82 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.82 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.82 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.82 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.82 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.82 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.82 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.82 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.82 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.82 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.81 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.81 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.81 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.81 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.81 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.81 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.81 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.81 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.81 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.81 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.8 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.8 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.8 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.68 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.8 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.8 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.79 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.79 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.79 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.79 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.79 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.79 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.78 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.78 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.78 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.77 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.77 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.76 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.76 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.76 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.76 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.75 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.75 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.75 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.75 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.74 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.74 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.74 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.74 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.73 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.73 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.73 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.73 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.73 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.73 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.72 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.72 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.72 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.71 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.71 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.71 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.71 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.71 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.71 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.71 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.7 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.69 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.69 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.69 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.69 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.68 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.68 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.67 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.66 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.63 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.58 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.36 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.57 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.51 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.5 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.41 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.39 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.38 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.36 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.19 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.15 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.96 |
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-54 Score=450.71 Aligned_cols=309 Identities=30% Similarity=0.470 Sum_probs=245.7
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|+.++ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.++||++|++++|.+.++++
T Consensus 26 ~~~t~~~h~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~ 103 (430)
T 3ri6_A 26 GFTTRALHVPKAKR--DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLAL 103 (430)
T ss_dssp CHHHHHHCCC----------------------------------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcchhheeCCCCCC--CCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 37899999997653 3478999999999999999998887777777778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+.+++.+++++||+|+++++.|++++..+...+...|+++.+++..|+++|+++++++ |++|++|+|+||+|.
T Consensus 104 ~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~-t~~v~~e~p~NptG~ 182 (430)
T 3ri6_A 104 GSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQLQ 182 (430)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCC-CeEEEEECCCCCCCe
Confidence 9999999999999999999999999999999887766777889999999999999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe--ChHH-------------
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG--SGKL------------- 376 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg--~~el------------- 376 (466)
+.|+++|.++|+++|++||+|++|+.+..+++..+|+|++++|+||+++||++++||+++. +.++
T Consensus 183 ~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~ 262 (430)
T 3ri6_A 183 VADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKA 262 (430)
T ss_dssp CCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHH
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhh
Confidence 9999999999999999999999999998899999999999999999999999999999994 3222
Q ss_pred -----HHHHHH-HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhh
Q 012321 377 -----VTQIRN-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450 (466)
Q Consensus 377 -----i~~l~~-~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~ 450 (466)
+.+++. ....+|..++++.+|+++++++++..|++++.+|+++++++|+++|.|++|+||+|++||+|+++++|
T Consensus 263 g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~ 342 (430)
T 3ri6_A 263 GPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQ 342 (430)
T ss_dssp GGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHH
T ss_pred chhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHh
Confidence 333332 34567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcce-EEEEEece
Q 012321 451 MTGFGG-VVSFEVCV 464 (466)
Q Consensus 451 ~~g~Gg-l~sfel~~ 464 (466)
| |+|| ||+|+|++
T Consensus 343 ~-g~Gg~~lsf~l~~ 356 (430)
T 3ri6_A 343 F-RYAGSILTFELES 356 (430)
T ss_dssp C-SSCCSEEEEECSS
T ss_pred C-CCCceEEEEEECC
Confidence 9 9999 99999974
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-53 Score=444.42 Aligned_cols=319 Identities=87% Similarity=1.283 Sum_probs=294.7
Q ss_pred hhhccCCCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhC
Q 012321 145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG 224 (466)
Q Consensus 145 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g 224 (466)
++++|++..+|+++|+|+..+.+..++++.+|||+|+||.|++.++..+.+.++..+|.|+|+++|+.++||++|++++|
T Consensus 49 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g 128 (445)
T 1qgn_A 49 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG 128 (445)
T ss_dssp CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred cccccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhC
Confidence 55666654499999999865311357899999999999999999888877777777899999999999999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCc-eEEEEe
Q 012321 225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV-SLFFTE 303 (466)
Q Consensus 225 ~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~t-klV~le 303 (466)
.+++++++||++|+.+++.+++++||+||++++.|++++.++...++..|+++.+++..|+++|+++++++ | ++|++|
T Consensus 129 ~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tv~lV~le 207 (445)
T 1qgn_A 129 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE 207 (445)
T ss_dssp CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-CCCEEEEe
Confidence 99999999999999999999999999999999999998887766678889999999988999999999875 8 999999
Q ss_pred CCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH
Q 012321 304 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL 383 (466)
Q Consensus 304 sPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~ 383 (466)
+|+||+|.+.|+++|.++|+++|+++|+|++|+.++...++.+|+|++++|+||+++|++|+++|+++++++++++++..
T Consensus 208 ~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~ 287 (445)
T 1qgn_A 208 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 287 (445)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888889999999999999999988899999999999999888
Q ss_pred HHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEec
Q 012321 384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463 (466)
Q Consensus 384 ~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~ 463 (466)
...+|..++++.+|+++++++++..|++++.+++++++++|+++|.|.+|+||++++||+|+++++||+|+|+|++|+++
T Consensus 288 ~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 288 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred HHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 88889889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred e
Q 012321 464 V 464 (466)
Q Consensus 464 ~ 464 (466)
+
T Consensus 368 ~ 368 (445)
T 1qgn_A 368 G 368 (445)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=435.66 Aligned_cols=309 Identities=34% Similarity=0.553 Sum_probs=290.1
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|... +.++++.||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.++|++++++++|.++++++
T Consensus 26 ~~~t~~~~~~~~~---~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~ 102 (414)
T 3ndn_A 26 SQATVGVRGGMLR---SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFAT 102 (414)
T ss_dssp CHHHHHHHTTCCC---CTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeeecCCCC---CCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEE
Confidence 5899999999764 2478999999999999999999888888887788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+.+++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++|+++++++ |++|++|+|+||+|.
T Consensus 103 ~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~-t~~v~le~p~NptG~ 181 (414)
T 3ndn_A 103 ASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQS 181 (414)
T ss_dssp SSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSC-CSEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence 9999999999999999999999999999998887776677789999999999999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|++||+|++|+++....++.+|+|++++|+||+++++|++++|+++++++.+. .++.....+|..
T Consensus 182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~ 261 (414)
T 3ndn_A 182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA 261 (414)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999887788889999999999999999999888999999998876 777777888999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++++++..|++++.+++++++++|+++|.|.+|+||+++++|+|+++++|++|+|+||+|+|++
T Consensus 262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~ 335 (414)
T 3ndn_A 262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC 335 (414)
T ss_dssp CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=435.28 Aligned_cols=310 Identities=27% Similarity=0.462 Sum_probs=289.4
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcc-cCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
+++|+++|+|..++ ..+++++||||+|+||.|++.+++.+.+.+. .++|.|+|+++|+.++||+++|+++|.+++++
T Consensus 25 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~ 102 (415)
T 2fq6_A 25 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL 102 (415)
T ss_dssp CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcCceeEeCCCCCC--CCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence 58899999997642 2478999999999999999999888877655 56799999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++||++|+.+++.+++++||+||++++.|++++..+...++..|+++++++..|+++|+++++++ |++|++|+|+||+|
T Consensus 103 ~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~-tklV~~e~~~NptG 181 (415)
T 2fq6_A 103 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM 181 (415)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTT-EEEEEEESSCTTTC
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccC-CcEEEEECCCCCCC
Confidence 99999999999999999999999999999999888877778889999999999999999999875 99999999999999
Q ss_pred ccccHHHHHHHHHh--cCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC
Q 012321 311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG 388 (466)
Q Consensus 311 ~v~dl~~I~ela~~--~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G 388 (466)
.+.|+++|+++|++ +|+++|+|++|+.++...++.+|+|++++|+||++++++++++|+++++++++++++......|
T Consensus 182 ~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G 261 (415)
T 2fq6_A 182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG 261 (415)
T ss_dssp CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred EeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcC
Confidence 99999999999999 9999999999999888888899999999999999999998889999999989999888877788
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++++.+|+++++++++..|++++.+|+..++++|+++|.|.+|+||+++++|+|+++++++.++|+|++|++++
T Consensus 262 ~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g 337 (415)
T 2fq6_A 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK 337 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999986
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=428.15 Aligned_cols=301 Identities=39% Similarity=0.665 Sum_probs=279.0
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|..++ ..+++++||||+++||.|++.+ ...+|.|+|+++|+.++|+++|++++|.+.++++
T Consensus 19 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~--------~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~ 88 (400)
T 3nmy_A 19 SLATLAIHGGQSPD--PSTGAVMPPIYATSTYAQSSPG--------EHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAF 88 (400)
T ss_dssp CHHHHHHHTTCCCC--TTTCBSSCCBCCCSBBBCSBTT--------BSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcchheeeCCCCCC--CCCCCcCCCccccceeeccCcc--------ccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 58899999998753 3578999999999999998753 3458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhh-cccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~-l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
+||++|+.+ +..++++||+|++.++.|++++..+... ++..|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus 89 ~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~e~~~np~G 166 (400)
T 3nmy_A 89 ASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPML 166 (400)
T ss_dssp SSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred cCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccC-CCEEEEECCCCCCC
Confidence 999999988 5778999999999999999988877766 77789999999999999999999874 99999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEE-EEE-eChHHHHHHHHHHHHhC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SIS-GSGKLVTQIRNLHHVLG 388 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG-~vv-g~~eli~~l~~~~~~~G 388 (466)
.+.|+++|.++|+++|+++|+|++|++++.+.++.+|+|++++|+||+++||++.++| +++ .+++++++++.....+|
T Consensus 167 ~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g 246 (400)
T 3nmy_A 167 KLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIG 246 (400)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHC
T ss_pred eeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988888899999999999999999999998999 555 57788999998888899
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++++.+|+++++++++..|++++.+|+++++++|+++|.|.+|+||++++||+|+++++||+|+|+|++|+|++
T Consensus 247 ~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~ 322 (400)
T 3nmy_A 247 GVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG 322 (400)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=406.45 Aligned_cols=303 Identities=38% Similarity=0.605 Sum_probs=282.8
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|..++ ..++++.||||++++|.+++.+ ....+|.|+|+++|+.++|+++|++++|.++++++
T Consensus 17 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~ 87 (392)
T 3qhx_A 17 GLATRAIHSGYRPD--PATGAVNAPIYASSTFAQDGVG-------GLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAF 87 (392)
T ss_dssp CHHHHHHHSSCCCC--TTTCBSSCCBCCCSBBCCSSTT-------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CcchhheeCCCCCC--CCCCCccCCcccCcceEecCcc-------cccCCccccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 37899999997653 3578999999999999998753 33457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus 88 ~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~ 166 (392)
T 3qhx_A 88 SSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLS 166 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCC-CeEEEEECCCCCCcE
Confidence 9999999999999999999999999999998888777778889999999999999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|+.++...+..+|+|++++|+||++++++++++|+++++ +++++.++......|..
T Consensus 167 ~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 246 (392)
T 3qhx_A 167 IADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAV 246 (392)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred EecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999888889999999999999999999998889999997 68889998888888999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.+++.+|+++++++++..|++++.+++++++++|+++|.|.+|+||+++++|+|+++++|++|+|+|++|+|++
T Consensus 247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~ 320 (392)
T 3qhx_A 247 PGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA 320 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-48 Score=397.53 Aligned_cols=308 Identities=35% Similarity=0.572 Sum_probs=285.6
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+| .. ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|...+|+++|++++|.++++++
T Consensus 5 ~~~t~~~~~~-~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~ 80 (389)
T 3acz_A 5 DITTTLLHPK-GD---HVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF 80 (389)
T ss_dssp CHHHHHHSCS-SC---CSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcceeEEecC-CC---CCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence 4789999999 32 2478999999999999999998888888776678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+..++.+++++||+|+++++.|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus 81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~ 159 (389)
T 3acz_A 81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCK 159 (389)
T ss_dssp SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTT-EEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCe
Confidence 9999999999999999999999999999998877666667789999999999999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|+.+....++.+++|++++|+||+++++++.++|++++++ +++++++.....+|..
T Consensus 160 ~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 239 (389)
T 3acz_A 160 VSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL 239 (389)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988777788889999999999999999987779999998 9999998887778888
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.+++.+|+++++++++..|++++.++++.++++|+++|.+.++.||+|+++|++.+++++++++|++++|++++
T Consensus 240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~ 313 (389)
T 3acz_A 240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS 313 (389)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=392.89 Aligned_cols=301 Identities=35% Similarity=0.603 Sum_probs=267.0
Q ss_pred CccccccccCCcCCCCCCC-CCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 152 SDGSLAIHAGERLGRGIVT-DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~-~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
+++|+++|+|...+ ..+ +++.+|||+++||.+++..+ ..+|.|+|+++|+..+||++|++++|.+++++
T Consensus 18 ~~~t~~~h~g~~~~--~~~~~~~~~pi~~stt~~~~~~~~--------~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~ 87 (403)
T 3cog_A 18 HFATQAIHVGQDPE--QWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLA 87 (403)
T ss_dssp THHHHHHHTTCCGG--GSTTCBSSCCBCCCSCBCCC----------------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcccEEEeCCCCCC--cCCCCCccCCeeccceeecCCccc--------cCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 47899999997643 245 79999999999999987532 13588999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++||++|+.+++. ++++||+|+++++.|++++..+...++..|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus 88 ~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~-t~~v~~~~p~nptG 165 (403)
T 3cog_A 88 FASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQ 165 (403)
T ss_dssp ESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred ECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCC
Confidence 9999999999998 899999999999999998877766778889999999988999999999874 99999999999999
Q ss_pred ccccHHHHHHHHHhcC-CEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhC
Q 012321 311 RCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG 388 (466)
Q Consensus 311 ~v~dl~~I~ela~~~g-illIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G 388 (466)
.+.|+++|.++|+++| +++|+|++|+.+....++.+++|++++|+||+++||+++++|+++++ ++++++++.....+|
T Consensus 166 ~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g 245 (403)
T 3cog_A 166 KVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG 245 (403)
T ss_dssp CCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_pred eeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC
Confidence 9999999999999999 99999999999887788888999999999999999998788999985 789999988888888
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
...+++.+|+++++++++..|++++.+|+..++++|+++|.|+++.||+|+++|++++++++++++|+|++|++++
T Consensus 246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~ 321 (403)
T 3cog_A 246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG 321 (403)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999975
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=382.80 Aligned_cols=309 Identities=30% Similarity=0.440 Sum_probs=274.7
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|+|...+ ..++++.+|||+++||.+++.++..+.+.++..+|.|+|+.+|..++|++++++++|.+.+++++
T Consensus 3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~ 80 (421)
T 2ctz_A 3 FETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATA 80 (421)
T ss_dssp HHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cceeeeeCCCCCC--cCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEec
Confidence 6799999997643 24789999999999999999988887776666789999999999999999999999998899999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe-CCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-DPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v-d~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
||++|+..++.+++++||+|+++.+.|+++...+...++..|+++.++ +..|+++|+++++++ +++|++++|+||+|.
T Consensus 81 sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~n~~G~ 159 (421)
T 2ctz_A 81 SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEK-TRAWWVESIGNPALN 159 (421)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccC-CeEEEEECCCCCCCc
Confidence 999999999999999999999999999998776655566789999999 888999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCC-CCCCccchhccCCcEEEeccccccccccCceEEEEEeC--hHH----HHHHH---
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS--GKL----VTQIR--- 381 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~-a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~--~el----i~~l~--- 381 (466)
+.|+++|.++|+++|+++|+|+++ +.++..+++..++|++++|++|+++++++.+||+++.+ +++ ++.++
T Consensus 160 ~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~ 239 (421)
T 2ctz_A 160 IPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239 (421)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCB
T ss_pred ccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhcccc
Confidence 999999999999999999999999 87766678888999999999999999988778888873 222 11221
Q ss_pred ----------------------H-HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 382 ----------------------N-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 382 ----------------------~-~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
. ....+|..++++.+|+++++++++..|++++.+++++++++|+++|.|+.|.||++
T Consensus 240 ~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~ 319 (421)
T 2ctz_A 240 PGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGL 319 (421)
T ss_dssp GGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTS
T ss_pred chhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCC
Confidence 0 12346778899999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHhhc-CCcceEEEEEece
Q 012321 439 KSHPEHHIATQQM-TGFGGVVSFEVCV 464 (466)
Q Consensus 439 ~s~p~~~l~~~~~-~g~Ggl~sfel~~ 464 (466)
+++|+|+++++++ ++.|+|++|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~ivsf~l~~ 346 (421)
T 2ctz_A 320 PHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp TTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred CCCCCHHHHHHhccCCCceEEEEEeCC
Confidence 9999999999999 7999999999975
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=374.19 Aligned_cols=310 Identities=35% Similarity=0.546 Sum_probs=249.3
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|...+ ..++++.+|+|+++||.+++.++....+.++..+|.|+|+++|..+++++++++++|.++++++
T Consensus 9 ~~~t~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~ 86 (398)
T 1gc0_A 9 GFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86 (398)
T ss_dssp CHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcCceeEeCCCCCC--CCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 47899999997642 3478999999999999999987766656666678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+..++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++++++++++ +++|++++|+||+|.
T Consensus 87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~ 165 (398)
T 1gc0_A 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMH 165 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCcc
Confidence 9999999999999999999999999999998877765567789999999988999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHH-hCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHV-LGG 389 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~-~G~ 389 (466)
+.|+++|.++|+++|+++|+|++|+.+....++..++|+++.|+||+++++++.++|++++++++++ .++..... +|.
T Consensus 166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~ 245 (398)
T 1gc0_A 166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA 245 (398)
T ss_dssp CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999998876666777899999999999999999877899999988776 56666666 778
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.+++..+++++++++++..|++++.++++.+.++|+++|.+.++.||+|+++|+|+++.+++.+.|++++|++++
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (398)
T 1gc0_A 246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 320 (398)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999974
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=365.20 Aligned_cols=309 Identities=32% Similarity=0.553 Sum_probs=279.7
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|.. + ..++++.+|+|+++++.++..++..+.+.+..+.|.|++.++|+.++|++++++++|.++++++
T Consensus 7 ~~~t~~~~~~~~-~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~ 83 (404)
T 1e5e_A 7 TPATACIHANPQ-K--DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 83 (404)
T ss_dssp CHHHHHHHSSCC-C--CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeeecCCC-C--CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEe
Confidence 468999999875 2 2367899999999999999987776666666678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++|+..++.+++++||+|+++++.|+++...+...++..|+++.+++..|+++|+++++++ +++|++|+|+||||.
T Consensus 84 ~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-t~~v~l~~p~NptG~ 162 (404)
T 1e5e_A 84 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLK 162 (404)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CcEEEEECCCCCCCc
Confidence 9999999999999999999999999999998776555567789999999988999999999874 999999999999999
Q ss_pred cccHHHHHHHHHh-cCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHHh-C
Q 012321 312 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-G 388 (466)
Q Consensus 312 v~dl~~I~ela~~-~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~~-G 388 (466)
+.|+++|.++|++ +|+++|+|++|+.+....++.+|+|+++.|+||+++++++.++|++++++++++ +++.....+ |
T Consensus 163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g 242 (404)
T 1e5e_A 163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG 242 (404)
T ss_dssp CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC
Confidence 9999999999999 999999999999887667778899999999999999999766799999999888 887766666 7
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
...+++.+++++++++++..|++++.++++.++++|++++.+.++.||+|.++|++.+++.++++.|++++|++++
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~ 318 (404)
T 1e5e_A 243 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS 318 (404)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999864
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=367.86 Aligned_cols=300 Identities=33% Similarity=0.573 Sum_probs=271.0
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ .++++.||||+++||.|++.+ ...++|.|+|+.++..++|+++|++++|.++.+++
T Consensus 7 ~~~t~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~ 76 (393)
T 1n8p_A 7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF 76 (393)
T ss_dssp CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEecCCCcc---CCCCcCCCcccccceeecccc-------ccccCcceecCCChhHHHHHHHHHHHhCCCcEEEE
Confidence 46899999997642 478999999999999998742 12257999999999999999999999999899999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+||++|+.+++. ++++||+|+++.+.|++++..+...++..|+++.+++..| ++|+++++++ |++|++++|+||+|.
T Consensus 77 ~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~-t~lv~~~~~~nptG~ 153 (393)
T 1n8p_A 77 SSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKEN-TKLVWIETPTNPTLK 153 (393)
T ss_dssp SCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSS-EEEEEECSSCTTTCC
T ss_pred CChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccC-ceEEEEECCCCCcce
Confidence 999999999999 8999999999999999887766666778899999998778 9999999874 999999999999999
Q ss_pred cccHHHHHHHHHhc----CCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHH
Q 012321 312 CVDVKLVSDLCHKK----GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV 386 (466)
Q Consensus 312 v~dl~~I~ela~~~----gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~ 386 (466)
+.|+++|.++|+++ |+++|+|++|+.+...++..+|+|++++|+||+++++|+.++|+++++ ++++++++..+..
T Consensus 154 ~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~ 233 (393)
T 1n8p_A 154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA 233 (393)
T ss_dssp CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999 999999999987665577778999999999999999998888999985 7899999888777
Q ss_pred hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEeCCCCCCCcchHHHHhhcCC-c-ceEEEEEec
Q 012321 387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQMTG-F-GGVVSFEVC 463 (466)
Q Consensus 387 ~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~-V~~V~~PgL~s~p~~~l~~~~~~g-~-Ggl~sfel~ 463 (466)
+|..+++..+++++++++++..|++++.++++.+.++|+++|. +.++.||++.++|+|+++.+++++ . |++++|+++
T Consensus 234 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~ 313 (393)
T 1n8p_A 234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK 313 (393)
T ss_dssp HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred cCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence 8888889999999999999999999999999999999999998 999999999999999999999877 7 999999997
Q ss_pred e
Q 012321 464 V 464 (466)
Q Consensus 464 ~ 464 (466)
+
T Consensus 314 ~ 314 (393)
T 1n8p_A 314 G 314 (393)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-43 Score=360.94 Aligned_cols=304 Identities=32% Similarity=0.513 Sum_probs=271.7
Q ss_pred ccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012321 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (466)
Q Consensus 153 ~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~ 232 (466)
++|+++|+|...+ .+++++||||+++||.|++.+++.+.+. ...+|.|+|+.++..+++++++++++|.+++++++
T Consensus 3 ~~t~~~~~~~~~~---~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~ 78 (412)
T 2cb1_A 3 YTTLAVLAGLPED---PHGAVGLPIYAVAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVLA 78 (412)
T ss_dssp HHHHHHHTTCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred ccceeeecCCCcC---CCCCcCCCccccceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence 6799999997642 4789999999999999999988877665 45679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccc
Q 012321 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (466)
Q Consensus 233 SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v 312 (466)
+|++|+..++.+++++||+|+++.+.|++++..+...++..|+++.+++. |+++|+++++++ +++|++++|+||+|.+
T Consensus 79 ~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~i~~~-~~~v~~~~~~n~~G~~ 156 (412)
T 2cb1_A 79 SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSAK-TRAVFVETVANPALLV 156 (412)
T ss_dssp SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-SHHHHHHHCCTT-EEEEEEESSCTTTCCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-CHHHHHHHhccC-CeEEEEeCCCCCCccc
Confidence 99999999999999999999999999998877666557778999998886 499999999874 9999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeCCCCCC-CccchhccCCcEEEeccccccccccCceEEEEEeCh-----------------
Q 012321 313 VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------------- 374 (466)
Q Consensus 313 ~dl~~I~ela~~~gillIvD~t~a~~-~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~----------------- 374 (466)
.|+++|.++|+++|+++|+|++|+.+ ....+...+.|+++.|+||+++++++.+||+++.++
T Consensus 157 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 236 (412)
T 2cb1_A 157 PDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236 (412)
T ss_dssp CCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred ccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999887 666777889999999999999999877788888773
Q ss_pred ----------HHHHHHHHHH-HHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcc
Q 012321 375 ----------KLVTQIRNLH-HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 443 (466)
Q Consensus 375 ----------eli~~l~~~~-~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~ 443 (466)
++.++++... ...|..+.+..+|+++.+++++..+++++.++++++.++|.++|.|..|++|++.+||+
T Consensus 237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~ 316 (412)
T 2cb1_A 237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA 316 (412)
T ss_dssp ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence 4555665544 44566778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcCCcceEEEEEe
Q 012321 444 HHIATQQMTGFGGVVSFEV 462 (466)
Q Consensus 444 ~~l~~~~~~g~Ggl~sfel 462 (466)
|+++++++++.|++++|++
T Consensus 317 ~~~~~~~~~~~~~iv~~~~ 335 (412)
T 2cb1_A 317 HRNARKYLASGGPILTLDL 335 (412)
T ss_dssp HHHHHHHCSSSCSEEEEEC
T ss_pred HHHHHHhCCCCceEEEEEe
Confidence 9999999999999999998
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=344.28 Aligned_cols=310 Identities=37% Similarity=0.645 Sum_probs=275.3
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
++.|+++|+|...+ ..+.++.+|++.++++.++...+....+.+....|.|+|+.++..+++++++++++|.++.+++
T Consensus 8 ~~~t~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~ 85 (398)
T 2rfv_A 8 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT 85 (398)
T ss_dssp CHHHHHHHTTCCCC--TTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCceeEeecCCcCc--cCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 46799999997642 2467899999999999999987766555555668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++|+..++.+++++||+|+++++.|+++...+...+...|+++..++..|+++++++++++ +++|++++|+||+|.
T Consensus 86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~ 164 (398)
T 2rfv_A 86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLS 164 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSBTTTTB
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence 9999999999999999999999999999998776655556779999999988999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHHh-CC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-GG 389 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~~-G~ 389 (466)
+.|+++|.++|+++|+++|+|++|+.+....++.+++|+++.|+||+++++++.++|++++++++++ .++.....+ |.
T Consensus 165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 244 (398)
T 2rfv_A 165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG 244 (398)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999877667778899999999999999998766799999998887 677666666 77
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..+++.++.+++.++.+..|++++.++++.+.++|++++.+..+.||+|+++|++.+...++++.|++++|++++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~ 319 (398)
T 2rfv_A 245 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG 319 (398)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 888999999999999999999999999999999999999999999999999999999999888899999999874
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=339.35 Aligned_cols=302 Identities=32% Similarity=0.548 Sum_probs=270.1
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|.|...+ ..++++.||||++++|.+++. +...+|.|+|+++|...+|+++|+++++.++.+++
T Consensus 4 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~ 73 (386)
T 1cs1_A 4 KQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGF--------NEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT 73 (386)
T ss_dssp CHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBT--------TBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcceeEEecCCCcc--ccCCCCCCCccccceeecccc--------CCCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence 36799999997542 347899999999999999764 22357999999999999999999999999899999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++|+..++.+++++||+|++..+.|++++..+...++..|+++..++..|+++|+++++++ +++|++++|+||+|.
T Consensus 74 ~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~ 152 (386)
T 1cs1_A 74 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLR 152 (386)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTC-CSEEEEECSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccC-CcEEEEeCCCCCCCc
Confidence 9999999999999999999999999999987776655567789999999988999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|..+....+...+.|+++.|++|++++++++++|++++++ +++++++.....++..
T Consensus 153 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~ 232 (386)
T 1cs1_A 153 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT 232 (386)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887666667789999999999999998876679999876 8889988877777777
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.++..++.++++++++..++++..++++.+.++|++++.+..+.+|+|.++|++.+...++++.|++++|++++
T Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (386)
T 1cs1_A 233 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC
Confidence 88888888888999999999999999999999999999999999999999999999999888999999999874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=339.10 Aligned_cols=300 Identities=34% Similarity=0.602 Sum_probs=266.6
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|.++|.+... +..+++.+||++++++.+++. ...+.|.|+++++|.++++++++++++|.++++++
T Consensus 86 ~~~~~~i~l~~g~---~~~~~~~~~i~~a~~~~~~~~--------~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~ 154 (464)
T 1ibj_A 86 SVSTLLVNLDNKF---DPFDAMSTPLYQTATFKQPSA--------IENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF 154 (464)
T ss_dssp CHHHHHTCCCCSS---CTTCCSSCCCCCCSBCCCSSS--------SCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcCCeEEECCCCC---CCCCCCCccHHhhhhhhhhcc--------cccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3678889987531 135678999999999987653 12346889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
++|++|+.+++. ++++||+|+++++.|+++...+....+..|+++.+++..|+++|+++++++ +++|++++|+||+|.
T Consensus 155 ~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~-tk~v~l~~p~NptG~ 232 (464)
T 1ibj_A 155 TSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQ 232 (464)
T ss_dssp SSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSS-EEEEEECSSCTTTCC
T ss_pred CCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-ceEEEEeCCCCCCCE
Confidence 999999988775 789999999999999998766656677789999999988999999999874 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~~ 390 (466)
+.|+++|.++|+++|+++|+|++|..+....++.+|+|++++|+||+++|++++++|++++++ +++++++......|..
T Consensus 233 v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~ 312 (464)
T 1ibj_A 233 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG 312 (464)
T ss_dssp CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred eecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887766677789999999999999998777889999984 8888888877778888
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++++.+|+++++++++..|++++.+++..++++|++++.+..+.|++|.++|++.++..+.+++|++++|++++
T Consensus 313 ~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~ 386 (464)
T 1ibj_A 313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS 386 (464)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred CCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999998888899999999864
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=306.71 Aligned_cols=249 Identities=18% Similarity=0.269 Sum_probs=218.6
Q ss_pred cCCCccCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCccchHHHH-------H
Q 012321 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFI-------E 267 (466)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~---~~SG~aAi~~al~all~pGD~VLv~~-~~y~~t~~~~-------~ 267 (466)
..+|.|+|. .+++||+++|+++|.+.+++ ++||++|+..++.+++++||+|++.+ +.|+++..++ .
T Consensus 65 ~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 141 (427)
T 3i16_A 65 SSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM 141 (427)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred CCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence 346777765 59999999999999998888 89999999999999999999999999 9999987665 2
Q ss_pred hhcccCCcEEEEeCC-----CCHHHHHHhccC-CCceEEEEeC----CCCCCcccccHHHHHHHHHh--cCCEEEEeCCC
Q 012321 268 TVLPKMGITATVIDP-----ADMEGLEAALNN-NNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTF 335 (466)
Q Consensus 268 ~~l~~~gi~v~~vd~-----~D~e~Le~ai~~-~~tklV~les----PsNPtG~v~dl~~I~ela~~--~gillIvD~t~ 335 (466)
..++..|+++.+++. .|+++|++++++ .++++|++++ |+||+|.+.|+++|+++|++ +|+++++|++|
T Consensus 142 ~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~ 221 (427)
T 3i16_A 142 GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCY 221 (427)
T ss_dssp CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred HHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 456677999999886 689999999982 2599999999 99999999999999999999 99999999999
Q ss_pred CCCC-ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH--HHhCCCchH-HH-HHHHHHhhHHHHHHH
Q 012321 336 ATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNP-NA-AYLIIRGMKTLHLRV 410 (466)
Q Consensus 336 a~~~-~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~~~G~~ls~-~~-A~l~lrgL~tl~~R~ 410 (466)
+.+. ...+...|+|++++|+||+++|+++.+||+++++++++++++... ..+|..+++ +. +|+++++++++..|+
T Consensus 222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~ 301 (427)
T 3i16_A 222 GEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHIS 301 (427)
T ss_dssp TTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHH
Confidence 9887 678888999999999999999999888999999999999988743 344444444 55 899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
+++.+++..++++|++++. +| ||+ ++||+|++ |++|++++
T Consensus 302 ~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~----------i~~i~l~~ 341 (427)
T 3i16_A 302 MEALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI----------IQSIKFND 341 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CEEEECSS
T ss_pred HHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE----------EEEEEECC
Confidence 9999999999999999987 77 899 89998876 88888753
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=299.25 Aligned_cols=247 Identities=17% Similarity=0.253 Sum_probs=216.3
Q ss_pred cCCCccCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH-------
Q 012321 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------- 267 (466)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~---~~SG~aAi~~al~all~pGD~VLv~~-~~y~~t~~~~~------- 267 (466)
..+|.|+|+ .+++||+++++++|.+.+++ ++||++|+.+++.++++|||+|++.+ +.|+++..++.
T Consensus 66 ~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 66 SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 346777775 48999999999999999998 89999999999999999999999999 99998876552
Q ss_pred hhcccCCcEEEEeCC----CCHHHHHHhcc--CCCceEEEEeC----CCCCCcccccHHHHHHHHHh--cCCEEEEeCCC
Q 012321 268 TVLPKMGITATVIDP----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTF 335 (466)
Q Consensus 268 ~~l~~~gi~v~~vd~----~D~e~Le~ai~--~~~tklV~les----PsNPtG~v~dl~~I~ela~~--~gillIvD~t~ 335 (466)
..++..|+++..++. .|+++|+++++ + +||+|++++ |+||+|.+.|+++|+++|++ +|+++++|++|
T Consensus 143 ~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~ 221 (427)
T 3hvy_A 143 GSLREYGVKYKMVDLKDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY 221 (427)
T ss_dssp CCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred hHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 456678999999987 79999999998 5 599999999 99999999999999999999 89999999999
Q ss_pred CCCC-ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchH--HHHHHHHHhhHHHHHHH
Q 012321 336 ATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNP--NAAYLIIRGMKTLHLRV 410 (466)
Q Consensus 336 a~~~-~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~--~~A~l~lrgL~tl~~R~ 410 (466)
+.+. ...|...|+|++++|+||+++|+++.+||+++++++++++++.... .+|..+++ ..++++++++++++.|+
T Consensus 222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~ 301 (427)
T 3hvy_A 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVT 301 (427)
T ss_dssp CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHH
Confidence 9887 6788889999999999999999988889999999999999987543 33322222 34899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEec
Q 012321 411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~ 463 (466)
+++.+|+..++++|++++. +| ||+ +++|.|++ +++|+++
T Consensus 302 ~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~l----------i~~~~l~ 340 (427)
T 3hvy_A 302 IEAVKGAVFCARIMELAGF--DV-LPK-YNDKRTDI----------IQAIKFN 340 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------EEEEECS
T ss_pred HHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCceE----------EEEEeCC
Confidence 9999999999999999986 77 898 88888876 7888775
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=294.29 Aligned_cols=245 Identities=16% Similarity=0.205 Sum_probs=212.6
Q ss_pred cCCCccCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH------h
Q 012321 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------T 268 (466)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~---~~SG~aAi~~al~all~pGD~VLv~~-~~y~~t~~~~~------~ 268 (466)
..+|.|+| +.++.||+++|+++|.+.+++ ++||++|+.+++.+++++||+|++++ +.|..+...+. .
T Consensus 51 ~~~~~y~~---~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~ 127 (409)
T 3jzl_A 51 STGYGYDD---EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQG 127 (409)
T ss_dssp CCTTCTTC---HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSS
T ss_pred CcCCCCCh---hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhh
Confidence 34676765 458999999999999999988 88999999999999999999999998 99998776553 4
Q ss_pred hcccCCcEEEEeCC-----CCHHHHHHhccCCCceEEEEeC----CCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCC
Q 012321 269 VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFAT 337 (466)
Q Consensus 269 ~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~tklV~les----PsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~ 337 (466)
.++..|+++.+++. .|+++|+++++++ |++|++++ |+||+|.+.|+++|+++|++ +|+++++|++|+.
T Consensus 128 ~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~-tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~ 206 (409)
T 3jzl_A 128 SLKDFHIGYSSVPLLENGDVDFPRIAKKMTPK-TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE 206 (409)
T ss_dssp CTGGGTCEEEECCCCTTSCCCHHHHHHHCCTT-EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred HHHHcCCEEEEeCCCCCCCcCHHHHHHhccCC-CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence 56778999999987 6999999999874 99999999 99999999999999999999 9999999999998
Q ss_pred CC-ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH------hCCCchHHHHHHHHHhhHHHHHHH
Q 012321 338 PL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRV 410 (466)
Q Consensus 338 ~~-~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~------~G~~ls~~~A~l~lrgL~tl~~R~ 410 (466)
++ ...+...|+|++++|+||+++|+++.+||+++++++++++++..... .|..+. .++++++++++++.|+
T Consensus 207 ~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~--~~~~~l~gl~~~~~r~ 284 (409)
T 3jzl_A 207 FVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLY--SLLEMYQGFFLAPHVT 284 (409)
T ss_dssp TTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHH
T ss_pred ccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHH--HHHHHHHHHhhHHHHH
Confidence 87 57788899999999999999999988899999999999998875432 222222 2566899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEec
Q 012321 411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~ 463 (466)
+++.+++..++++|++++. +| ||+ ++||+|++ |++|+++
T Consensus 285 ~~~~~~a~~la~~L~~~g~--~v-~p~-~~~~~~~~----------i~~i~l~ 323 (409)
T 3jzl_A 285 AQAIKGARFTAAMLAEFGV--EA-DPV-WDAPRTDL----------IQSVSFH 323 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CCEEECS
T ss_pred HHHHHHHHHHHHHHHhCCC--cc-cCC-CCCCCccE----------EEEEEeC
Confidence 9999999999999999987 67 888 88888775 7777764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=277.13 Aligned_cols=249 Identities=36% Similarity=0.592 Sum_probs=223.8
Q ss_pred HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhcc
Q 012321 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 293 (466)
Q Consensus 214 ~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~ 293 (466)
+|++++++++|.++.+++++|++|+..++.+++++||+|+++.+.|+++...+...++..|+++.+++..|+++++++++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~ 81 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999977665544556799999999889999999998
Q ss_pred CCCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe
Q 012321 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372 (466)
Q Consensus 294 ~~~tklV~lesPsNPtG~v~dl~~I~ela~~-~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg 372 (466)
++ +++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.+....++..+.|+++.|+||+++++++.++|++++
T Consensus 82 ~~-~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~ 160 (331)
T 1pff_A 82 PN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS 160 (331)
T ss_dssp TT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred CC-CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEe
Confidence 74 9999999999999999999999999999 999999999998765555667889999999999999988655899999
Q ss_pred Ch-HHHHHHHHHHHH-hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhh
Q 012321 373 SG-KLVTQIRNLHHV-LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450 (466)
Q Consensus 373 ~~-eli~~l~~~~~~-~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~ 450 (466)
++ +++++++..... .+...++..++.+.++++++..|+++..++.+.+.++|++++.+..+.+++|.+.|++.+...+
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 240 (331)
T 1pff_A 161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240 (331)
T ss_dssp CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhh
Confidence 98 898888876665 5667888888888889999999999999999999999999999999999999999999999988
Q ss_pred cCCcceEEEEEec
Q 012321 451 MTGFGGVVSFEVC 463 (466)
Q Consensus 451 ~~g~Ggl~sfel~ 463 (466)
..+.|++++|+++
T Consensus 241 ~~~~~~~~~~~~~ 253 (331)
T 1pff_A 241 MKMFGSMIAFDVD 253 (331)
T ss_dssp CSSCCSEEEEECS
T ss_pred CCCCceEEEEEEC
Confidence 8889999999875
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-28 Score=251.44 Aligned_cols=232 Identities=18% Similarity=0.223 Sum_probs=192.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH------hhcccCCcEE
Q 012321 208 GNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGITA 277 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~---~~SG~aAi~~al~all~pGD~VLv~~-~~y~~t~~~~~------~~l~~~gi~v 277 (466)
+++.+++|++++++++|.+..++ ++||++|+..++.+++++||+|++.+ +.|+.+...+. ..++..|+++
T Consensus 63 ~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 63 DDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp SCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred ChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence 35679999999999999987776 88999999999999999999999998 99998765542 3456689999
Q ss_pred EEeCC-----CCHHHHHHhccCCCceEEEEeC-CCCCC---cccccHHHHHHHHHh--cCCEEEEeCCCCCCC-ccchhc
Q 012321 278 TVIDP-----ADMEGLEAALNNNNVSLFFTES-PTNPF---LRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKALS 345 (466)
Q Consensus 278 ~~vd~-----~D~e~Le~ai~~~~tklV~les-PsNPt---G~v~dl~~I~ela~~--~gillIvD~t~a~~~-~~~pl~ 345 (466)
.+++. .|+++|+++++++ +++|++++ |+||+ |.+.|+++|+++|++ +|+++|+|++|+.+. ..++..
T Consensus 143 ~~v~~~~~~~~d~e~l~~~l~~~-tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~ 221 (431)
T 3ht4_A 143 NAVPLTEGGLVDFEAVAAAIHSN-TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCH 221 (431)
T ss_dssp EECCBCTTSSBCHHHHHHHCCTT-EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGG
T ss_pred EEeCCCCCCCcCHHHHHhhcCCC-CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccc
Confidence 99886 4899999999874 99999995 55555 555678999999999 999999999999876 367888
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchH--HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~--~~A~l~lrgL~tl~~R~e~~~~na~~La 421 (466)
.|+|+++.|++|+++|+....||+++++++++++++..... +|....+ ..++++++++++++.|++++.+++..++
T Consensus 222 ~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~ 301 (431)
T 3ht4_A 222 VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTA 301 (431)
T ss_dssp TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999997666789999999999998875543 2322222 2367788999999999999999999999
Q ss_pred HHHHcCCCcEEEeCCCCCCCcch
Q 012321 422 KILEAHPKVKRVHYPGLKSHPEH 444 (466)
Q Consensus 422 ~~L~~~p~V~~V~~PgL~s~p~~ 444 (466)
++|++++. .| +|+ ++++.+
T Consensus 302 ~~L~~~g~--~v-~p~-~~~~~~ 320 (431)
T 3ht4_A 302 AFLEKLGM--NT-SPA-WNAPRT 320 (431)
T ss_dssp HHHHHHTC--CE-ESC-TTSCCS
T ss_pred HHHHhCcC--Ee-cCC-CCCCCc
Confidence 99999875 45 676 555543
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=217.97 Aligned_cols=219 Identities=12% Similarity=0.169 Sum_probs=171.7
Q ss_pred chhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 209 NPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.+...+|++.++++++ .++++++++|++|+..++.+++++||+|+++.+.|.+....+ ...|.++..++.
T Consensus 62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIP----KSLGAEVDLWQIEEE 137 (375)
T ss_dssp TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHH----HHTTCEEEEEEEEGG
T ss_pred CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEecccc
Confidence 4456799999999874 267888888889999999999999999999999999866443 345766666542
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---c-hhccCCcEE
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K-ALSLGADLV 351 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~---~-pl~~gaDiv 351 (466)
.|+++|+++++++ +++|++++|+||+|.+.| +++|.++|++||+++|+|++|+..... . ....+.+++
T Consensus 138 ~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 216 (375)
T 3op7_A 138 NGWLPDLEKLRQLIRPT-TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA 216 (375)
T ss_dssp GTTEECHHHHHHHCCTT-CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred CCCCCCHHHHHHhhccC-CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence 3899999999874 999999999999999999 999999999999999999998763321 1 112356799
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHcC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH----LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~----~R~e~~~~na~~La~~L~~~ 427 (466)
+.|+||.++.+| .++|++++++++++.++..+...+...++..++++...++..+ .+.++..++++.+.+.|+++
T Consensus 217 ~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (375)
T 3op7_A 217 VNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE 295 (375)
T ss_dssp EEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998666 4579999999999999877766665666666665555554433 33444578888999999998
Q ss_pred CCcEEE
Q 012321 428 PKVKRV 433 (466)
Q Consensus 428 p~V~~V 433 (466)
|.+..+
T Consensus 296 ~~~~~~ 301 (375)
T 3op7_A 296 PLVSYI 301 (375)
T ss_dssp TTEEEC
T ss_pred CCceEe
Confidence 877654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=210.99 Aligned_cols=213 Identities=11% Similarity=0.099 Sum_probs=172.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+...+|++++++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+... +...|.++..++..|+++
T Consensus 82 ~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~ 157 (384)
T 1bs0_A 82 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTH 157 (384)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHH
T ss_pred ChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHH----HHHcCCCEEEeCCCCHHH
Confidence 3478899999999999998999999999999999999999999999999999976543 344688888898889999
Q ss_pred HHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------chhccCCcEEEeccccc
Q 012321 288 LEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLGADLVLHSATKF 358 (466)
Q Consensus 288 Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-------~pl~~gaDivv~S~sK~ 358 (466)
|++++++. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|+++.|+||+
T Consensus 158 l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~ 237 (384)
T 1bs0_A 158 LARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKG 237 (384)
T ss_dssp HHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSST
T ss_pred HHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccch
Confidence 99998753 3799999999999999999999999999999999999999765421 11223589999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~lrgL~-----tl~~R~e~~~~na~~La~~L~~~p 428 (466)
++.+ ||+++++++++++++..... .+...++..+..+...++ .++.+.++..++++.+.+.|++++
T Consensus 238 ~~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 310 (384)
T 1bs0_A 238 FGVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP 310 (384)
T ss_dssp TSSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhcc----CcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 9854 49999999999888765322 223456665554444443 344667778889999999999873
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=217.74 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=174.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCC
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
+.|+....+...++++++++++|. ++.+++++|++|+.+++.++ +++||+|+++.++|+++...+.......|
T Consensus 64 ~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g 143 (420)
T 1t3i_A 64 HQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG 143 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC
Confidence 345433356788999999999998 67888888899999999999 89999999999999996543434445567
Q ss_pred cEEEEeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-chhccCC
Q 012321 275 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGA 348 (466)
Q Consensus 275 i~v~~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-~pl~~ga 348 (466)
+++..++. .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+... .....+.
T Consensus 144 ~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~ 222 (420)
T 1t3i_A 144 AVLKFVQLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDC 222 (420)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred cEEEEeccCCCCCcCHHHHHHhhCCC-ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCC
Confidence 88877764 5899999999874 999999999999999999999999999999999999998865432 3345689
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH--------------------hCCCchHHHHHHH----HHhhH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------LGGALNPNAAYLI----IRGMK 404 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--------------------~G~~ls~~~A~l~----lrgL~ 404 (466)
|+++.|+||.++++| +|+++++++++++++..... +....++..++++ ++.++
T Consensus 223 di~~~s~sK~~~~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 223 DWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp SEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEehhhhcCCCc---eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 999999999887765 68999999988877543321 1111223333332 23333
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 405 T--LHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 405 t--l~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
. ++.+.++..++++.+.+.|++.|+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 329 (420)
T 1t3i_A 300 DLGMENIHNYEVELTHYLWQGLGQIPQLRL 329 (420)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 2 455667788899999999999887643
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=216.30 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=170.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
.|.|++...+..+++++++++++|.+ +.+++++|++++.+++.++ +++||+|+++.+.|+++...+....+..|.
T Consensus 60 ~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~ 139 (406)
T 3cai_A 60 AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGA 139 (406)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCC
Confidence 35555445678899999999999974 5666677779999998887 789999999999999876555443344588
Q ss_pred EEEEeCCC------CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCC
Q 012321 276 TATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA 348 (466)
Q Consensus 276 ~v~~vd~~------D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~ga 348 (466)
++.+++.. |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....++.
T Consensus 140 ~v~~v~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~ 218 (406)
T 3cai_A 140 KVKWAEVDIETGELPTWQWESLISKS-TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDA 218 (406)
T ss_dssp EEEEECCCTTTCCCCGGGHHHHCCTT-EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCC
T ss_pred eEEEEecCcccCCcCHHHHHHHhCCC-ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCC
Confidence 88887654 889999999874 99999999999999999999999999999999999999986543 33334689
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH--------h-CCCchHHHHH---HHHHhhH------------
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------L-GGALNPNAAY---LIIRGMK------------ 404 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--------~-G~~ls~~~A~---l~lrgL~------------ 404 (466)
|+++.|++|++++ + +||+++++++++++++..... + .++.+..... .+++.+.
T Consensus 219 d~~~~s~~K~~g~-~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 295 (406)
T 3cai_A 219 DVVTVNAHAWGGP-P--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE 295 (406)
T ss_dssp SEEEEEGGGGTSC-S--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHH
T ss_pred CEEEeehhhhcCC-C--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhh
Confidence 9999999998763 3 333999999888776543211 1 2223332221 1222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 405 ----TLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 405 ----tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
.++...++..++++.+.+.|++.|+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (406)
T 3cai_A 296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVM 326 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 245566677788999999999988763
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=210.84 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=172.6
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+...+|++++++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+.. .++..|.++..++..|+++
T Consensus 86 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~ 161 (399)
T 3tqx_A 86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID----GIRLCKAQRYRYKNNAMGD 161 (399)
T ss_dssp CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHSCCSEEEEECTTCTTH
T ss_pred CchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH----HHHHcCCceeEeCCCCHHH
Confidence 467789999999999999999999999999999999999999999999999998654 3445688888888888899
Q ss_pred HHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-------hhc--cCCcEEEe
Q 012321 288 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------ALS--LGADLVLH 353 (466)
Q Consensus 288 Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~-------pl~--~gaDivv~ 353 (466)
|++.+++. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.++... ... .+.|+++.
T Consensus 162 l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~ 241 (399)
T 3tqx_A 162 LEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTG 241 (399)
T ss_dssp HHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEE
T ss_pred HHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEe
Confidence 99888651 48999999999999999999999999999999999999996543211 111 25799999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~t----l~~R~e~~~~na~~La~~L~~~ 427 (466)
|+||+++|. .||++++++++++.++.... .+....++..+..++..++. +....++..++++.+.+.|+++
T Consensus 242 s~sK~~~g~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (399)
T 3tqx_A 242 TLGKALGGA---SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL 318 (399)
T ss_dssp ESSSSSCSS---CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhcccC---ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 999999944 36999999999998887533 23445666655544444443 4566677888889999999875
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=210.15 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=165.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A 283 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----~ 283 (466)
.++...+|++++++++|.++.+++++|++|+.+++.+++++||+|+++++.|..++... ......|+++.+++. .
T Consensus 36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 114 (347)
T 1jg8_A 36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM 114 (347)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCcc
Confidence 57889999999999999999999999999999999999999999999999997654211 112335666666521 3
Q ss_pred CHHHHHHhccC-----CCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC------CCccchhccCC
Q 012321 284 DMEGLEAALNN-----NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGA 348 (466)
Q Consensus 284 D~e~Le~ai~~-----~~tklV~lesPsNPt-G~v~d---l~~I~ela~~~gillIvD~t~a~------~~~~~pl~~ga 348 (466)
|+++|++++++ .++++|++++|+||| |.+.+ +++|.++|+++|+++|+|+++.. +.....+..+.
T Consensus 115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~ 194 (347)
T 1jg8_A 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA 194 (347)
T ss_dssp CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc
Confidence 89999999975 149999999999999 99876 57889999999999999998632 22222333468
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l--s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~ 426 (466)
|.++.|+||+++++ +||+++++++++++++.++..++... ....++++..+++....++++..++++.+.+.|++
T Consensus 195 d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~ 271 (347)
T 1jg8_A 195 DSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE 271 (347)
T ss_dssp SEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98889999999875 46678889999998887777666443 44555555556665444566666788888888877
Q ss_pred C
Q 012321 427 H 427 (466)
Q Consensus 427 ~ 427 (466)
+
T Consensus 272 ~ 272 (347)
T 1jg8_A 272 I 272 (347)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=215.17 Aligned_cols=223 Identities=18% Similarity=0.230 Sum_probs=169.6
Q ss_pred CCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhcc----CCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 206 RYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~----pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
+...+..+++++++++++|.+ +++++++|++|+.+++.+++. +||+|+++.+.|++....+.. +...|+++..
T Consensus 64 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~ 142 (423)
T 3lvm_A 64 WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTY 142 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEEEE
Confidence 334566789999999999985 788888889999999988874 799999999999987655533 3556888888
Q ss_pred eCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEe
Q 012321 280 IDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLH 353 (466)
Q Consensus 280 vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~ 353 (466)
++.. |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. ......+.|+++.
T Consensus 143 v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~ 221 (423)
T 3lvm_A 143 LAPQRNGIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSF 221 (423)
T ss_dssp ECCCTTSCCCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEE
T ss_pred eccCCCCccCHHHHHHhcCCC-cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEe
Confidence 8753 899999999874 99999999999999999999999999999999999999876544 3444568899999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHH-------HhCCCchHHHHHHH---HHhh-HHHHHHHHHHHHHHHHHHH
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLI---IRGM-KTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-------~~G~~ls~~~A~l~---lrgL-~tl~~R~e~~~~na~~La~ 422 (466)
|+||++++++ .|++++++++++.++.... ....+.+......+ ++.+ +.++...++..++++.+.+
T Consensus 222 s~sK~~g~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~ 298 (423)
T 3lvm_A 222 SGHKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWN 298 (423)
T ss_dssp ESTTTTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhcCCCC---eEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887765 5788888766555433221 11122233322222 2222 2245667778888999999
Q ss_pred HHHcCCCcEEE
Q 012321 423 ILEAHPKVKRV 433 (466)
Q Consensus 423 ~L~~~p~V~~V 433 (466)
.|+++|.+..+
T Consensus 299 ~L~~~~~~~~~ 309 (423)
T 3lvm_A 299 GIKDIEEVYLN 309 (423)
T ss_dssp HHTTSTTEEEE
T ss_pred HHhcCCCEEEe
Confidence 99988877544
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=211.68 Aligned_cols=212 Identities=18% Similarity=0.180 Sum_probs=173.9
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+..... +...|+++..++..|+++|
T Consensus 89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l 164 (401)
T 1fc4_A 89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMQEL 164 (401)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHH----HHTSCSEEEEECTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHH----HHHcCCceEEECCCCHHHH
Confidence 688999999999999998899999999999999999999999999999999876543 4467888888888899999
Q ss_pred HHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------chhccCCcEEEec
Q 012321 289 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHS 354 (466)
Q Consensus 289 e~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---------~pl~~gaDivv~S 354 (466)
++++++. ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.++.. ..+..+.|+++.|
T Consensus 165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s 244 (401)
T 1fc4_A 165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT 244 (401)
T ss_dssp HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence 9988641 4899999999999999999999999999999999999999643321 1112357999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
+||+++++. ||++++++++++.++.... .+....++..++.+...++.+ ..+.++..++++.+.+.|+++
T Consensus 245 ~sK~~~~~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (401)
T 1fc4_A 245 LGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp SSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhccCCC---CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 999995443 4999999999998876542 235566777776666666655 466778888999999999886
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=214.59 Aligned_cols=220 Identities=14% Similarity=0.226 Sum_probs=166.7
Q ss_pred ccCCCCchhHHHHHHH-HHhhhCCCcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 203 EYGRYGNPTTVVVEEK-MSALEGAESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~-lA~l~g~e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.++++..+...+++++ +++++|.+ .+++++| ++|+..++.+++++||+|++++++|.+.... +...|+++..+
T Consensus 46 ~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v 120 (371)
T 2e7j_A 46 RLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALV 120 (371)
T ss_dssp -------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEe
Confidence 3455567889999999 99999988 5555555 7999999999999999999999999987644 34568888887
Q ss_pred C--CC-----CHHHHHHhcc-----CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccC
Q 012321 281 D--PA-----DMEGLEAALN-----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG 347 (466)
Q Consensus 281 d--~~-----D~e~Le~ai~-----~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~g 347 (466)
+ .. |+++|+++++ + ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.. .....++
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 121 PKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG 199 (371)
T ss_dssp CCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred ecccCCCCCcCHHHHHHHHHhhcccC-CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence 7 43 7999999997 5 499999999999999999999999999999999999999987654 3344568
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHH-HHHHHH--Hh-----CCCchHHHHHHHHHhhHHHH-HHHHHH--HHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH--VL-----GGALNPNAAYLIIRGMKTLH-LRVQQQ--NST 416 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~-l~~~~~--~~-----G~~ls~~~A~l~lrgL~tl~-~R~e~~--~~n 416 (466)
.|+++.|+||+++++. .+|+++++++++++ ++.... .. ....++...+.+...++.+. ...++. .++
T Consensus 200 ~di~~~s~sK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 277 (371)
T 2e7j_A 200 ADFIVGSGHKSMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK 277 (371)
T ss_dssp CSEEEEEHHHHSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred CCEEEecCCcCCCCCC--CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998875 56999999888776 654332 11 22334443433334444444 344556 788
Q ss_pred HHHHHHHHHcCCCcE
Q 012321 417 ALRMAKILEAHPKVK 431 (466)
Q Consensus 417 a~~La~~L~~~p~V~ 431 (466)
++++.+.|+++ ++.
T Consensus 278 ~~~l~~~L~~~-~~~ 291 (371)
T 2e7j_A 278 ARRFAAEMEKL-GIK 291 (371)
T ss_dssp HHHHHHHHHHT-TCE
T ss_pred HHHHHHHHHHc-CcE
Confidence 89999999987 554
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=204.79 Aligned_cols=227 Identities=19% Similarity=0.175 Sum_probs=172.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.+.|+....+..+++++.+++.+| .++.+++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.+
T Consensus 57 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~----~~~g~~ 132 (391)
T 3dzz_A 57 AFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVI----EGNGRR 132 (391)
T ss_dssp CCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHH----HHTTCE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHH----HHcCCE
Confidence 456776666778888888888877 356777777789999999999999999999999999866443 346777
Q ss_pred EEEeCC--------CCHHHHHHhccCCCceEEEEeCCCCCCccc---ccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012321 277 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----- 340 (466)
Q Consensus 277 v~~vd~--------~D~e~Le~ai~~~~tklV~lesPsNPtG~v---~dl~~I~ela~~~gillIvD~t~a~~~~----- 340 (466)
+..++. .|+++|++++++.++++|++++|+||||.+ .++++|.++|+++|+++|+|++|+....
T Consensus 133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 212 (391)
T 3dzz_A 133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI 212 (391)
T ss_dssp EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence 777654 689999999984459999999999999999 5789999999999999999999875322
Q ss_pred cchhccC---Cc--EEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhC-CCchHHHHHHHHHh----hHHHHHH
Q 012321 341 QKALSLG---AD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRG----MKTLHLR 409 (466)
Q Consensus 341 ~~pl~~g---aD--ivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G-~~ls~~~A~l~lrg----L~tl~~R 409 (466)
.....++ .| +++.|+||+++.+| .+.|+++++ +++++.++......+ ...++...+.+... .+.++.+
T Consensus 213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 291 (391)
T 3dzz_A 213 TPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL 291 (391)
T ss_dssp CCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred eehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence 1122222 45 99999999997666 357888886 889998887655333 23333333333222 3336677
Q ss_pred HHHHHHHHHHHHHHHHc-CCCcEE
Q 012321 410 VQQQNSTALRMAKILEA-HPKVKR 432 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~-~p~V~~ 432 (466)
.++..++++.+.+.|++ .|.+..
T Consensus 292 ~~~~~~~~~~l~~~l~~~~~~~~~ 315 (391)
T 3dzz_A 292 KQVLRDNFAYAREFLAKEVPEVKV 315 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEE
Confidence 77888899999999998 777643
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-23 Score=205.57 Aligned_cols=220 Identities=12% Similarity=0.148 Sum_probs=171.3
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++...++++++++++|. ++.+++++|++|+.+++.+++++||+|+++.+.|.+.... +...|.++..++
T Consensus 61 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~ 136 (363)
T 3ffh_A 61 TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQN----ALIEGAEVREIP 136 (363)
T ss_dssp CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHH----HHHHTCEEEEEE
T ss_pred hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHH----HHHcCCEEEEec
Confidence 4455677789999999999985 5677788888999999999999999999999999885543 344577777776
Q ss_pred CC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCc-------cchhccC
Q 012321 282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-------QKALSLG 347 (466)
Q Consensus 282 ~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~-------~~pl~~g 347 (466)
.. |+++++++++++ +++|++++|+||||.+.|+++|.++++.+ |+++|+|++|+.... ......+
T Consensus 137 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (363)
T 3ffh_A 137 LLQDGEHDLEGMLNAIDEK-TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK 215 (363)
T ss_dssp CCTTSCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred CCCCCCcCHHHHHHhcccC-CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence 54 899999999874 99999999999999999999999999887 999999999873221 1111234
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L 424 (466)
.++++.|+||.++.+| .+.|+++++++++++++.....+ ..++..++.+...+ +.+..+.++..++++.+.+.|
T Consensus 216 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 292 (363)
T 3ffh_A 216 NLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVRPPF--NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA 292 (363)
T ss_dssp TEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTCCSC--CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998776 45788889999999888765533 44555555444444 566777788889999999999
Q ss_pred HcCCCcE
Q 012321 425 EAHPKVK 431 (466)
Q Consensus 425 ~~~p~V~ 431 (466)
++++++.
T Consensus 293 ~~~~g~~ 299 (363)
T 3ffh_A 293 KRFEKVK 299 (363)
T ss_dssp HHCTTCE
T ss_pred hhCCCce
Confidence 9977664
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-24 Score=216.68 Aligned_cols=200 Identities=22% Similarity=0.194 Sum_probs=165.1
Q ss_pred hHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 211 TTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+.+++.+++++|. ++++++++|++|+..++.++ +||+|+++.+.|+++...+. .++..|+++..+ .|+++
T Consensus 59 ~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~ 133 (374)
T 2aeu_A 59 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGE 133 (374)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHH
T ss_pred HHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHH
Confidence 345777778888898 77888999999999999877 99999999999988766554 455678888877 68999
Q ss_pred HHHhccCCCceE-EEEeCCCCCCc-ccccHHHHHHHHHhcCCEEEEeCCCCCCC---c-cc-hhccCCcEEEeccccccc
Q 012321 288 LEAALNNNNVSL-FFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGTFATPL---N-QK-ALSLGADLVLHSATKFIG 360 (466)
Q Consensus 288 Le~ai~~~~tkl-V~lesPsNPtG-~v~dl~~I~ela~~~gillIvD~t~a~~~---~-~~-pl~~gaDivv~S~sK~lg 360 (466)
|+++ ++ ++++ |++++|+||+| ...|+++|.++|+++|+++|+|++|+... . .. +...+.|+++.|+||+++
T Consensus 134 l~~~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~ 211 (374)
T 2aeu_A 134 ILNK-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 211 (374)
T ss_dssp HHTT-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS
T ss_pred HHhc-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc
Confidence 9988 65 5999 99999999999 88899999999999999999999987543 1 11 556788999999999988
Q ss_pred cccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH-HHHHHHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRM 420 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~-R~e~~~~na~~L 420 (466)
|. ++|+++++++++++++.....++...++..++.+...++.+.. +++++.++++.+
T Consensus 212 g~---~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 269 (374)
T 2aeu_A 212 GP---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNF 269 (374)
T ss_dssp SC---SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred Cc---ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 75 4799999999999998887777777788888877777777644 667777777666
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=205.21 Aligned_cols=215 Identities=15% Similarity=0.097 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 209 NPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.+..+++++++++++|.+ + .+++++|++|+..++.+++++||+|+++++.|.+.. +...+...|+++..++.
T Consensus 52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 129 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPG 129 (386)
T ss_dssp HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCC
Confidence 678899999999999975 5 455677779999999999999999999999998731 22334556777777754
Q ss_pred --CCHHHHHHhccC-CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccccc
Q 012321 283 --ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKF 358 (466)
Q Consensus 283 --~D~e~Le~ai~~-~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~ 358 (466)
.|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ......++|+++.|+||+
T Consensus 130 ~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~ 209 (386)
T 2dr1_A 130 KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKA 209 (386)
T ss_dssp CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTST
T ss_pred CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEecccc
Confidence 689999999942 2489999999999999999999999999999999999999886543 233345789999999999
Q ss_pred cccccCceEEEEEeChHHHHHHH----------------HHH--HHhCCCchHHHHHHHHHhhHH------HHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIR----------------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQN 414 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~----------------~~~--~~~G~~ls~~~A~l~lrgL~t------l~~R~e~~~ 414 (466)
++++.+ .|+++++++++++++ ... .....+.++...+.+...++. ++.+.++..
T Consensus 210 ~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~ 287 (386)
T 2dr1_A 210 FGVPPG--LAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYE 287 (386)
T ss_dssp TCCCSS--CEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCc--eEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998743 599999999888763 121 122234444444433333432 456677888
Q ss_pred HHHHHHHHHHHcC
Q 012321 415 STALRMAKILEAH 427 (466)
Q Consensus 415 ~na~~La~~L~~~ 427 (466)
++++.+.+.|+++
T Consensus 288 ~~~~~l~~~L~~~ 300 (386)
T 2dr1_A 288 KRAKMVREGVREI 300 (386)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 8999999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=210.62 Aligned_cols=220 Identities=15% Similarity=0.240 Sum_probs=169.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+.+|+++...+|++++++++|. ++.+++++|++|+.+++.+++++||+|+++.+.|.+.... +...|.++..+
T Consensus 61 ~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v 136 (367)
T 3euc_A 61 LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGV 136 (367)
T ss_dssp TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHH----HHTTTCEEEEE
T ss_pred hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEe
Confidence 3445556789999999999997 4555556666999999999999999999999999986543 34567777776
Q ss_pred C-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhc--CCEEEEeCCCCCCCcc----chhcc
Q 012321 281 D-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKK--GAIVCIDGTFATPLNQ----KALSL 346 (466)
Q Consensus 281 d-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~--gillIvD~t~a~~~~~----~pl~~ 346 (466)
+ ..|+++|++++++.++++|++++|+||||.+. ++++|+++|+++ |+++|+|++|+..... .....
T Consensus 137 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 216 (367)
T 3euc_A 137 PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDF 216 (367)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTC
T ss_pred cCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhC
Confidence 5 34899999999873499999999999999997 477888889999 9999999998753221 11223
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg---L~tl~~R~e~~~~na~~La~~ 423 (466)
+.++++.|+||+ +++| .+.|+++++++++++++.....++ .++..++.+... .+.+..+.++..++++.+.+.
T Consensus 217 ~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 292 (367)
T 3euc_A 217 GNLLVMRTVSKL-GLAG-IRLGYVAGDPQWLEQLDKVRPPYN--VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEG 292 (367)
T ss_dssp TTEEEEEECCCT-TSCS-CCEEEEEECHHHHHHHGGGCCSSC--CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecchhh-cccc-cCceeeeeCHHHHHHHHHhCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 566999999999 6655 568999999999988876554333 445444444333 344677788888999999999
Q ss_pred HHcCCCcE
Q 012321 424 LEAHPKVK 431 (466)
Q Consensus 424 L~~~p~V~ 431 (466)
|+++|++.
T Consensus 293 l~~~~g~~ 300 (367)
T 3euc_A 293 MAAHGGVT 300 (367)
T ss_dssp HHTSTTCE
T ss_pred HHhCCCcE
Confidence 99998876
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=207.58 Aligned_cols=216 Identities=12% Similarity=0.182 Sum_probs=169.8
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++...+|++++++++|. ++.+++++|++|+.+++.+++++||+|+++.+.|...... +...|.++..++
T Consensus 59 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~ 134 (365)
T 3get_A 59 AHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIY----AKQCGAKCYKTQ 134 (365)
T ss_dssp TTSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHHHTCEEEECS
T ss_pred hccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEe
Confidence 3444555557999999999995 5777888888999999999999999999999999986543 344688888887
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHH--hcCCEEEEeCCCCCCC---c----cchh---
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL---N----QKAL--- 344 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~--~~gillIvD~t~a~~~---~----~~pl--- 344 (466)
. .|+++|++++++ ++++|++++|+||||.+.++++|.++++ ++|+++|+|++|+... . ....
T Consensus 135 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 213 (365)
T 3get_A 135 SITHNLDEFKKLYETHKD-EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELI 213 (365)
T ss_dssp SSSCCHHHHHHHHHHTTT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHH
T ss_pred cCCCCCCCHHHHHHHhCC-CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHh
Confidence 5 578999999986 4999999999999999999999888888 6799999999987322 1 1111
Q ss_pred -ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHH
Q 012321 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 345 -~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l---rgL~tl~~R~e~~~~na~~L 420 (466)
..+.++++.|+||+++.+| .+.|+++++++++++++.....++ .++..++.+. +..+.+..+.+++.++++.+
T Consensus 214 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 290 (365)
T 3get_A 214 KEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAFYKLRAPFN--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELY 290 (365)
T ss_dssp HHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHHHHhcCCCC--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2367799999999998676 357888899999999887766554 4444444333 33355777788888999999
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 291 ~~~l~~~ 297 (365)
T 3get_A 291 KEFAKKH 297 (365)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9999987
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=211.53 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=174.8
Q ss_pred CCCCchhHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.+...+..+++++++++++|. ++.+++++|++|+..++.+++++||+|+++.+.|.+....+ ...|.++..
T Consensus 77 ~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~ 152 (407)
T 3nra_A 77 YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLV----EFFEGEMVP 152 (407)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHH----HHTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHH----HHcCCEEEE
Confidence 334467788999999999886 56777777779999999999999999999999999865433 345666665
Q ss_pred eCC-----------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----c
Q 012321 280 IDP-----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----Q 341 (466)
Q Consensus 280 vd~-----------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~ 341 (466)
++. .|+++|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.... .
T Consensus 153 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~ 231 (407)
T 3nra_A 153 VQLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASY 231 (407)
T ss_dssp EEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCC
T ss_pred eecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 543 389999999987 4899999999999999998 89999999999999999999875321 1
Q ss_pred ch---h---ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHH
Q 012321 342 KA---L---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQ 411 (466)
Q Consensus 342 ~p---l---~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e 411 (466)
.+ + ..+.++++.|+||.++.+| .+.|++++++++++.++.....+....++..++.+...+ +.+..+.+
T Consensus 232 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 310 (407)
T 3nra_A 232 THLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIA 310 (407)
T ss_dssp CCGGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHH
T ss_pred CChhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHH
Confidence 11 1 1345699999999998665 457899999999999988877776666666555444433 34677788
Q ss_pred HHHHHHHHHHHHHHcCCCcEE
Q 012321 412 QQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~~ 432 (466)
+..++++.+.+.|+++|.+..
T Consensus 311 ~~~~~~~~l~~~L~~~~~~~~ 331 (407)
T 3nra_A 311 RHQAIRDELLHVLRGCEGVFA 331 (407)
T ss_dssp HHHHHHHHHHHHHHTSTTCBC
T ss_pred HHHHHHHHHHHHHhcCCCcee
Confidence 888999999999999876643
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=206.00 Aligned_cols=216 Identities=15% Similarity=0.144 Sum_probs=171.0
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
+.....+..+++++++++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+... +...|.++..++..
T Consensus 82 ~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~----~~~~g~~~~~v~~~ 157 (398)
T 3a2b_A 82 FLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDG----SRLSFSKVIKYGHN 157 (398)
T ss_dssp TTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHH----HHHSSSEEEEECTT
T ss_pred cccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHH----HHHcCCceEEeCCC
Confidence 33334688999999999999999899999999999999999999999999999999986644 34468888888888
Q ss_pred CHHHHHHhccCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----chhc-c----CCcEE
Q 012321 284 DMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS-L----GADLV 351 (466)
Q Consensus 284 D~e~Le~ai~~~---~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~----~pl~-~----gaDiv 351 (466)
|+++|++++++. ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.+... .... . ++|++
T Consensus 158 d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~ 237 (398)
T 3a2b_A 158 NMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLI 237 (398)
T ss_dssp CHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEE
T ss_pred CHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEE
Confidence 999999999762 4899999999999999999999999999999999999999765321 1112 1 26999
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHH-HH-HhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HH-VLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-~~-~~G~~ls~~~A~l---~lrgL~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+.|+||+++.+| |++++++++++.++.. .. ......++..... +++.++.+..+.++..++++.+.+.|++
T Consensus 238 ~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 313 (398)
T 3a2b_A 238 MGTFSKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLD 313 (398)
T ss_dssp EEESSSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999654 8999999999988774 22 2233344443322 2333333445677788889999999987
Q ss_pred C
Q 012321 427 H 427 (466)
Q Consensus 427 ~ 427 (466)
.
T Consensus 314 ~ 314 (398)
T 3a2b_A 314 H 314 (398)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=204.57 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=173.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.+.|+.+..+..+++++++++++| .++.+++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.+
T Consensus 62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~ 137 (391)
T 4dq6_A 62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVV----KNNNRE 137 (391)
T ss_dssp CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHH----HHTTCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHH----HHcCCe
Confidence 467887778889999999999988 356778888889999999999999999999999999866443 346777
Q ss_pred EEEeCCC---------CHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012321 277 ATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 277 v~~vd~~---------D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~--- 341 (466)
+..++.. |+++|++++++ +++|++++|+||||.+. ++++|.++|+++|+++|+|++|+.....
T Consensus 138 ~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 215 (391)
T 4dq6_A 138 LIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK 215 (391)
T ss_dssp EEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred EEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC
Confidence 7776543 89999999976 89999999999999994 6889999999999999999998753221
Q ss_pred --chhcc-----CCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCC-CchHHHHHHHHHhh----HHHHH
Q 012321 342 --KALSL-----GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG-ALNPNAAYLIIRGM----KTLHL 408 (466)
Q Consensus 342 --~pl~~-----gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~-~ls~~~A~l~lrgL----~tl~~ 408 (466)
..... +..+++.|+||.++.+| .+.|++++++ ++++.++......+. +.++..+..+...+ +.+..
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 294 (391)
T 4dq6_A 216 HIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLES 294 (391)
T ss_dssp CCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred ccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHH
Confidence 11122 23489999999998666 4578888775 888888877654432 44555444333333 33666
Q ss_pred HHHHHHHHHHHHHHHHHc-CCCcEE
Q 012321 409 RVQQQNSTALRMAKILEA-HPKVKR 432 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~-~p~V~~ 432 (466)
+.++..++++.+.+.|++ .|.+..
T Consensus 295 ~~~~~~~~~~~l~~~l~~~~~~~~~ 319 (391)
T 4dq6_A 295 FLEYLESNIDFAIKYINENMPKLKV 319 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEe
Confidence 677888899999999988 577643
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=204.43 Aligned_cols=217 Identities=15% Similarity=0.196 Sum_probs=170.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++...+|++++++++|. ++.+++++|++|+..++.+++++||+|+++.++|.+.... +...|+++..++
T Consensus 45 ~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~ 120 (354)
T 3ly1_A 45 ANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHF----AKIAGMKVTKVK 120 (354)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEEC
T ss_pred CcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHH----HHHcCCEEEEec
Confidence 3455678889999999999985 5667777777999999999999999999999999986543 345688888887
Q ss_pred CC-----CHHHHHHhccC-CCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----chh----c
Q 012321 282 PA-----DMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----S 345 (466)
Q Consensus 282 ~~-----D~e~Le~ai~~-~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~~----~pl----~ 345 (466)
.. |+++|++++++ .++++|++++|+||||.+.++++|.++++. +|+++|+|++|+..... ... .
T Consensus 121 ~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 200 (354)
T 3ly1_A 121 MLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQ 200 (354)
T ss_dssp CCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHT
T ss_pred CCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhh
Confidence 55 89999999983 259999999999999999999888888887 99999999998753321 111 2
Q ss_pred c-CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 012321 346 L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 ~-gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La 421 (466)
. +.++++.|+||+++.+| .+.|+++++++++++++.....+ ..++...+.+...+ +.+..+.+++.++++.+.
T Consensus 201 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 277 (354)
T 3ly1_A 201 GAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVAGE--KINFSGVDAALASMNDSAFITYSKKSNDVSRQILL 277 (354)
T ss_dssp TCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTTCS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2 56799999999997665 45799999999999887765543 44555444444333 456677788888999999
Q ss_pred HHHHcC
Q 012321 422 KILEAH 427 (466)
Q Consensus 422 ~~L~~~ 427 (466)
+.|+++
T Consensus 278 ~~l~~~ 283 (354)
T 3ly1_A 278 KALEDL 283 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 999875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=210.52 Aligned_cols=221 Identities=16% Similarity=0.175 Sum_probs=168.6
Q ss_pred CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
..+...++++++++++|. ++.+++++|++|+.+++.++ +++||+|+++.++|++....+.......|+++..+
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 144 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 144 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence 456788999999999997 45677777789999999999 89999999999999987655545555568888777
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
+. .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ......+.|+++.|
T Consensus 145 ~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s 223 (406)
T 1kmj_A 145 PLNPDGTLQLETLPTLFDEK-TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS 223 (406)
T ss_dssp CBCTTSCBCGGGHHHHCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred ecCCCCCcCHHHHHHHhccC-CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEE
Confidence 64 3789999999874 99999999999999999999999999999999999999876533 22234579999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHH---------------------HhCCCchHHHHHHHH-HhhHH-----HH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLII-RGMKT-----LH 407 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~---------------------~~G~~ls~~~A~l~l-rgL~t-----l~ 407 (466)
++|.++++| .|+++++++++++++.... .+....++..++.++ ..++. ++
T Consensus 224 ~~K~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 300 (406)
T 1kmj_A 224 GHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN 300 (406)
T ss_dssp GGGTTSCTT---CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred chhccCCCC---cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 999997665 5899999998887754321 011111222222222 22332 33
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 408 LRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
...++..++++.+.+.|++.|++..
T Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~~~ 325 (406)
T 1kmj_A 301 NIAEYEQNLMHYALSQLESVPDLTL 325 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 4566677889999999999877643
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-22 Score=201.29 Aligned_cols=208 Identities=15% Similarity=0.271 Sum_probs=165.5
Q ss_pred HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 212 ~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
...|++.++++++ .++.+++++|++|+.+++.+++++||+|++++++|++.... +...|.++..++ .
T Consensus 68 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~-~ 142 (370)
T 2z61_A 68 ILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD-F 142 (370)
T ss_dssp CHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-S
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-C
Confidence 4567777776653 25677888888999999999999999999999999986543 345688888887 7
Q ss_pred CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----cchhc----cCCcEEEecc
Q 012321 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHSA 355 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~----~~pl~----~gaDivv~S~ 355 (466)
|+++|++++++ ++++|++++|+||||.+.+++ |.++|+++|+++|+|++|..+.. ..... .+.|+++.|+
T Consensus 143 d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~ 220 (370)
T 2z61_A 143 TVESLEEALSD-KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGF 220 (370)
T ss_dssp SHHHHHHHCCS-SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEES
T ss_pred CHHHHHHhccc-CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecC
Confidence 89999999987 499999999999999999999 99999999999999999876432 11222 3678999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~-----tl~~R~e~~~~na~~La~~L~~~ 427 (466)
||+++.+| .+.|++++++++++.++........+.++...+.+...++ .++...++..++++.+.+.|+++
T Consensus 221 sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 296 (370)
T 2z61_A 221 SKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF 296 (370)
T ss_dssp TTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998666 4679999999999999887766655666666655554444 34455666778888999999876
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=209.33 Aligned_cols=212 Identities=16% Similarity=0.178 Sum_probs=172.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+...+|+++|++++|.++.++++||++|+..++.+++++||+|+++.+.|++....+ ...|.++..++..|+++
T Consensus 107 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~----~~~g~~~~~~~~~d~~~ 182 (427)
T 2w8t_A 107 TFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGC----QQGNAEIVRFRHNSVED 182 (427)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHH----HHSCSEEEEECTTCHHH
T ss_pred CcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHH----HHcCCeeEEeCCCCHHH
Confidence 45788999999999999999999999999999999999999999999999999865443 34578888888889999
Q ss_pred HHHhccCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------chhccCCcEEEecc
Q 012321 288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSA 355 (466)
Q Consensus 288 Le~ai~~~---~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---------~pl~~gaDivv~S~ 355 (466)
|++++++. ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+... ..+..++|+++.|+
T Consensus 183 le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~ 262 (427)
T 2w8t_A 183 LDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262 (427)
T ss_dssp HHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred HHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecc
Confidence 99999762 4899999999999999999999999999999999999998865432 11123579999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
+|+++.+ ||++++++++++.++... ..++...++..+..+...++.+ +.+.++..++++++.+.|++.
T Consensus 263 sK~~g~~----gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (427)
T 2w8t_A 263 SKSVGTV----GGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM 335 (427)
T ss_dssp SSTTCSC----CEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccC----CCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999854 499999998888776542 2334556666555554555544 667788888999999999876
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=209.01 Aligned_cols=211 Identities=11% Similarity=0.117 Sum_probs=169.4
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~L 288 (466)
.+..++|++++++++|.+..+++++|++|+..++.+++++||+|+++++.|+.+...+ ...|.++..++..|+++|
T Consensus 103 ~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~l 178 (409)
T 3kki_A 103 DYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGA----RYANAQAHPFMHNNCDHL 178 (409)
T ss_dssp TTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHH----HHTTCEEEEECTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHH----HHcCCeEEEecCCCHHHH
Confidence 3567789999999999999999999999999999999999999999999999866443 345788888888899999
Q ss_pred HHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------c--hhccCCcEEEecccccc
Q 012321 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--ALSLGADLVLHSATKFI 359 (466)
Q Consensus 289 e~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-------~--pl~~gaDivv~S~sK~l 359 (466)
+++++++++++|++++|+||||.+.++++|.++|+++|++||+|++|+.+... . ....+.|+++.|++|++
T Consensus 179 e~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~ 258 (409)
T 3kki_A 179 RMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTF 258 (409)
T ss_dssp HHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred HHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhh
Confidence 99997644899999999999999999999999999999999999998764321 1 11225789999999999
Q ss_pred ccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl---~~R~e~~~~na~~La~~L~~~ 427 (466)
+++ +|++++++++++.++.... .++...++..+..++..++.+ ..+.++..++++.+.+.|++.
T Consensus 259 ~~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~ 327 (409)
T 3kki_A 259 AYR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL 327 (409)
T ss_dssp CSS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 976 4999999988887765332 344445665544444444433 456667788899999999876
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=203.73 Aligned_cols=210 Identities=13% Similarity=0.161 Sum_probs=156.3
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...|++.+++++ |. ++.+++++|++|+.+++.+++++||+|+++.|+|......+ +..|.++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 145 (385)
T 1b5p_A 70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMV----RFAGGVVVEVETL 145 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeecC
Confidence 345555555544 42 45666666679999999999999999999999998755433 345777666643
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chhcc--C
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL--G 347 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl~~--g 347 (466)
.|+++|+++++++ +++|++++|+||||.+++ +++|+++|+++|+++|+|++|+..... ....+ +
T Consensus 146 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 224 (385)
T 1b5p_A 146 PEEGFVPDPERVRRAITPR-TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE 224 (385)
T ss_dssp GGGTTCCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred cccCCCCCHHHHHHhcCCC-CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCC
Confidence 4789999999874 999999999999999976 889999999999999999998764321 11222 5
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh-------hHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-------MKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg-------L~tl~~R~e~~~~na~~L 420 (466)
.++++.|+||.++.+| .+.|+++++++++++++..+.....+.+....+.+... .+.++...+++.++++.+
T Consensus 225 ~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 303 (385)
T 1b5p_A 225 HTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLL 303 (385)
T ss_dssp TEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 6799999999999777 45799999999999888776544434444444433222 334555667777888888
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 304 ~~~L~~~ 310 (385)
T 1b5p_A 304 LEGLTAL 310 (385)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 8888865
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=204.27 Aligned_cols=218 Identities=17% Similarity=0.245 Sum_probs=163.9
Q ss_pred CCCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 205 GRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e-~~v~~~SG-~aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.+|+++...+|++++++++|.+ +.+++++| ++++..++.+++++| |+|+++.|+|.+....+ ...|.++..++
T Consensus 53 ~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~----~~~g~~~~~v~ 128 (356)
T 1fg7_A 53 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA----ETIGVECRTVP 128 (356)
T ss_dssp TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHH----HHHTCEEEECC
T ss_pred ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHH----HHcCCEEEEee
Confidence 4455556789999999999863 44555555 599999999999999 99999999999866443 34577777765
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHH---HHHHHhcCCEEEEeCCCCCCCc-cchh----ccCC
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV---SDLCHKKGAIVCIDGTFATPLN-QKAL----SLGA 348 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I---~ela~~~gillIvD~t~a~~~~-~~pl----~~ga 348 (466)
. .|+++++++++ ++++|++++|+||||.+.+.++| +++|+ +|+++|+|++|..... .... ..+.
T Consensus 129 ~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~ 205 (356)
T 1fg7_A 129 TLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPH 205 (356)
T ss_dssp CCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred CCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCC
Confidence 3 47899999987 49999999999999999986555 55555 8999999999875431 1111 2356
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t-----l~~R~e~~~~na~~La~~ 423 (466)
++++.|+||+++.+| .+.|++++++++++.++.....+ +.++..++.+...++. +..+.++..++++.+.+.
T Consensus 206 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (356)
T 1fg7_A 206 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 282 (356)
T ss_dssp EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998766 45789999999999888765544 3455555544444433 566677788889999999
Q ss_pred HHcCCCcEE
Q 012321 424 LEAHPKVKR 432 (466)
Q Consensus 424 L~~~p~V~~ 432 (466)
|++++.+..
T Consensus 283 L~~~~~~~~ 291 (356)
T 1fg7_A 283 LKEIPCVEQ 291 (356)
T ss_dssp HHHSTTEEE
T ss_pred HHhCCCceE
Confidence 999886533
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=206.82 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=165.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCC
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all----~pGD~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
.|.|++...+..+++++++++++|.+ +.+++++|++|+.+++.+++ ++||+|+++++.|++....+. .+...|
T Consensus 34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g 112 (382)
T 4hvk_A 34 VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQG 112 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcC
Confidence 35555666788899999999999974 45666677799999999887 999999999999998766543 334568
Q ss_pred cEEEEeCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCC
Q 012321 275 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA 348 (466)
Q Consensus 275 i~v~~vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~ga 348 (466)
+++.+++.. |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+ +|+|++++.+.. ......++
T Consensus 113 ~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~ 190 (382)
T 4hvk_A 113 FEVEYIPVGKYGEVDVSFIDQKLRDD-TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGA 190 (382)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTC
T ss_pred CEEEEeccCCCCCcCHHHHHHHhccC-ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCC
Confidence 888888643 899999999874 9999999999999999999999999999999 999999876544 23334589
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHH-------HHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA 417 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-------~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na 417 (466)
|+++.|+||+++++| .|+++.+++. .++... .....+.+....+.+...+ +.++.+.++..+++
T Consensus 191 d~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 265 (382)
T 4hvk_A 191 DMLTISSNDIYGPKG---VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLR 265 (382)
T ss_dssp SEEEEESGGGTSCTT---CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeHHHhcCCCc---eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999887665 3555554432 111111 0112223333332222222 34556677788889
Q ss_pred HHHHHHHHcCCCcEE
Q 012321 418 LRMAKILEAHPKVKR 432 (466)
Q Consensus 418 ~~La~~L~~~p~V~~ 432 (466)
+.+.+.|+++|.+..
T Consensus 266 ~~l~~~L~~~~~~~~ 280 (382)
T 4hvk_A 266 DRIIDNVLKIEESYL 280 (382)
T ss_dssp HHHHHHHTTSTTEEE
T ss_pred HHHHHHHhcCCCeEE
Confidence 999999998887643
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=202.30 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=161.9
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...+++.+++++ |. ++.+++++|++|+..++.+++++||+|+++++.|++.... ++..|+++..++.
T Consensus 69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~ 144 (388)
T 1j32_A 69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM----VKLAEGTPVILPTT 144 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCEEEEecCC
Confidence 445555555554 42 4556666667999999999999999999999999986543 3446777777653
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chh----
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL---- 344 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl---- 344 (466)
.|+++|+++++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..... ...
T Consensus 145 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 223 (388)
T 1j32_A 145 VETQFKVSPEQIRQAITPK-TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP 223 (388)
T ss_dssp GGGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred cccCCCCCHHHHHHhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccc
Confidence 3789999999874 999999999999999964 899999999999999999998754321 111
Q ss_pred -ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012321 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR 419 (466)
Q Consensus 345 -~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~ 419 (466)
..+.|+++.|+||+++.+| .+.|+++++++++++++..........++..++.+...+ +.+..+.+++.++++.
T Consensus 224 ~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (388)
T 1j32_A 224 EAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRY 302 (388)
T ss_dssp HHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1457899999999998666 457999999999998887766544455555544433333 3466667788889999
Q ss_pred HHHHHHcCCCcE
Q 012321 420 MAKILEAHPKVK 431 (466)
Q Consensus 420 La~~L~~~p~V~ 431 (466)
+.+.|++.|++.
T Consensus 303 l~~~L~~~~g~~ 314 (388)
T 1j32_A 303 MLDALNAMPGLE 314 (388)
T ss_dssp HHHHHHTCTTCB
T ss_pred HHHHHhhCCCCc
Confidence 999999887664
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=203.02 Aligned_cols=219 Identities=13% Similarity=0.100 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+...++++++++++|.+ +.+++++|++|+.+++.++ +++||+|+++.+.|++....+....+..|.++..++.
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 138 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL 138 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence 67889999999999974 6778888899999999999 8999999999999998765444444556788877764
Q ss_pred ---CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHH----hcCCEEEEeCCCCCCCcc-chhccCCcEEEec
Q 012321 283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLNQ-KALSLGADLVLHS 354 (466)
Q Consensus 283 ---~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~----~~gillIvD~t~a~~~~~-~pl~~gaDivv~S 354 (466)
.|+++|+++++++ +++|++++|+||||.+.|+++|.++|+ ++|+++|+|++|+.+... .....+.|+++.|
T Consensus 139 ~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s 217 (390)
T 1elu_A 139 NQGDAAAVLANHLGPK-TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFT 217 (390)
T ss_dssp SSSCHHHHHHTTCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEE
T ss_pred CccchHHHHHHhcCCC-ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEcc
Confidence 3689999999874 999999999999999999999999999 999999999998754321 1124578999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHH----------------------HHhCCCchHHHHH---HHHHhhHH---H
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAY---LIIRGMKT---L 406 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~----------------------~~~G~~ls~~~A~---l~lrgL~t---l 406 (466)
++|++.++.. .|+++++++++++++... ....++.+..... .+++.++. +
T Consensus 218 ~~K~~~~~~g--~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~ 295 (390)
T 1elu_A 218 GHKWFAGPAG--VGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA 295 (390)
T ss_dssp SSSTTCCCTT--CEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred ccccccCCCc--eEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 9996655532 589999988877664321 1111233333222 23333333 5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 407 HLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
..+.++..++++.+.+.|+++|++.
T Consensus 296 ~~~~~~~~~~~~~l~~~L~~~~g~~ 320 (390)
T 1elu_A 296 EERYQAICQRSEFLWRGLNQLPHVH 320 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 6677888899999999999987764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=205.99 Aligned_cols=210 Identities=15% Similarity=0.211 Sum_probs=159.0
Q ss_pred HHHHHHHHHhhhC--------C-CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALEG--------A-ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~g--------~-e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...+++.++++++ . ++.+++++|++|+..++.+++++||+|+++.|.|.+....+ ...|.++..++.
T Consensus 63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 138 (410)
T 3e2y_A 63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMV----RMAGAVPVFIPL 138 (410)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEec
Confidence 4556666666544 2 45666666669999999999999999999999999866443 335666555542
Q ss_pred ----------------CCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc--
Q 012321 283 ----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (466)
Q Consensus 283 ----------------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~-- 341 (466)
.|+++++++++++ +++|++++|+||||.++ ++++|+++|+++|+++|+|++|......
T Consensus 139 ~~~~~~g~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 217 (410)
T 3e2y_A 139 RSKPTDGMKWTSSDWTFDPRELESKFSSK-TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH 217 (410)
T ss_dssp EECCCCSSCCBGGGEECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred cccccccccccccCCcCCHHHHHhhcCCC-ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC
Confidence 3899999999874 99999999999999995 6899999999999999999998753211
Q ss_pred ---chhc----cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----------
Q 012321 342 ---KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---------- 404 (466)
Q Consensus 342 ---~pl~----~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~---------- 404 (466)
.... .+.++++.|+||.++.+| .+.|++++++++++.++..........++..++.+...++
T Consensus 218 ~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 296 (410)
T 3e2y_A 218 THVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPE 296 (410)
T ss_dssp CCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred CCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchH
Confidence 1111 234599999999998666 4679999999999998877765555556655554444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 -TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 -tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+..+.+++.++++.+.+.|+++
T Consensus 297 ~~~~~~~~~~~~~~~~l~~~L~~~ 320 (410)
T 3e2y_A 297 CYFNSLPKELEVKRDRMVRLLNSV 320 (410)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35666777888999999999987
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=205.84 Aligned_cols=211 Identities=20% Similarity=0.274 Sum_probs=175.5
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~--- 283 (466)
.++...++|+.+++++|.+++++++||++|+..++.++ +++||+|+++.++|.++...+ ...|+++.+++..
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~----~~~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV----ALLGAKPVYVDIDPRT 108 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH----HHcCCEEEEEecCCcc
Confidence 56889999999999999999999999999999999999 899999999999999876543 4468888877632
Q ss_pred ---CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCC--cEEEecc--c
Q 012321 284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--T 356 (466)
Q Consensus 284 ---D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~ga--Divv~S~--s 356 (466)
|+++|+++++++ +++|+ |+||+|.+.|+++|.++|+++|+++|+|++++.+........+. |+++.|+ +
T Consensus 109 ~~~d~~~l~~~i~~~-~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~ 184 (367)
T 3nyt_A 109 YNLDPQLLEAAITPR-TKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPS 184 (367)
T ss_dssp CSBCGGGTGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTT
T ss_pred CCcCHHHHHHhcCcC-CcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCC
Confidence 789999999874 89888 78999999999999999999999999999988655433333333 9999996 8
Q ss_pred cccccccCceEEEEEe-ChHHHHHHHHHHHH------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg-~~eli~~l~~~~~~------------~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~ 423 (466)
|++++.|. +|++++ ++++.++++..+.. ++..+++..+.+++..++.++.+.++..++++++.+.
T Consensus 185 K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~ 262 (367)
T 3nyt_A 185 APLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLS 262 (367)
T ss_dssp SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998663 788887 57788887765432 2345778888888888888888888899999999999
Q ss_pred HHcCC
Q 012321 424 LEAHP 428 (466)
Q Consensus 424 L~~~p 428 (466)
|++.+
T Consensus 263 L~~~~ 267 (367)
T 3nyt_A 263 LKQVG 267 (367)
T ss_dssp HHHTT
T ss_pred hccCC
Confidence 99874
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=209.93 Aligned_cols=211 Identities=16% Similarity=0.168 Sum_probs=174.1
Q ss_pred chhHHHHHHHH-HhhhC-CCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 209 NPTTVVVEEKM-SALEG-AESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 209 ~p~~~~Lee~l-A~l~g-~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.|...+||+++ ++++| .+++++++||++|+.+++.++ +++||+||++.+.|.++...+ ...|+++.+++.
T Consensus 35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~----~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAA----IWCGLEPYFIDISID 110 (377)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTT
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCc
Confidence 48899999999 99999 789999999999999999998 899999999999999876443 456888888763
Q ss_pred ---CCHHHHHHhccCCC--ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhcc---CCcEEEec
Q 012321 283 ---ADMEGLEAALNNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL---GADLVLHS 354 (466)
Q Consensus 283 ---~D~e~Le~ai~~~~--tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~---gaDivv~S 354 (466)
.|+++|++++...+ |++|+ |+||+|.+.|+++|.++|+ +|++||+|++++.+........ ..|+.++|
T Consensus 111 ~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S 186 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYS 186 (377)
T ss_dssp TCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEE
T ss_pred cCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEE
Confidence 28999999883224 88887 7889999999999999999 9999999999886644332233 26888888
Q ss_pred c--ccccccccCceEEEEEe-ChHHHHHHHHHHHH------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012321 355 A--TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419 (466)
Q Consensus 355 ~--sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~------------~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~ 419 (466)
+ +|++++ + .||+++. +++++++++.++.. ++..++++.+++.+..+++++.+++++++++++
T Consensus 187 ~~~~K~l~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~ 263 (377)
T 3ju7_A 187 FHATKPFGI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEW 263 (377)
T ss_dssp CBTTSSSCC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCCCcCCC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 699997 4 3677776 56788888776542 235578899999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 012321 420 MAKILEAHPKV 430 (466)
Q Consensus 420 La~~L~~~p~V 430 (466)
+.+.|++++.+
T Consensus 264 ~~~~L~~~~~~ 274 (377)
T 3ju7_A 264 YKQLLQSNGLM 274 (377)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHhcCCCCc
Confidence 99999998754
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=205.84 Aligned_cols=217 Identities=16% Similarity=0.204 Sum_probs=172.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
|+++..+...+|++++++++|.++.++++||++|+.+++.++ +++||+|+++.+.|.++...+ ...|+++.+++.
T Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~v~~ 107 (388)
T 1b9h_A 32 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA----QRLGAVTVPVDV 107 (388)
T ss_dssp CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECB
T ss_pred eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHH----HHcCCEEEEEec
Confidence 445567889999999999999989999999999999999999 899999999999999876443 456788777753
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---chhccCCcEEEe
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALSLGADLVLH 353 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~---~pl~~gaDivv~ 353 (466)
.|+++|+++++++ +++|+ |+||+|.+.|+++|.++|+++|+++|+|++++.+... ....++ |+++.
T Consensus 108 ~~~~~~~d~~~l~~~i~~~-~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~ 182 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAVTPR-TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF 182 (388)
T ss_dssp CTTTCCBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred CCCcCCCCHHHHHHhcCcC-ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence 3899999999874 88887 9999999999999999999999999999999875432 222333 67777
Q ss_pred ccc--cccccccCceEEEEEeChH-H--HHHHHHHHHH-------------hCC--CchHHHHHHHHHhhHHHHHHHHHH
Q 012321 354 SAT--KFIGGHNDVLAGSISGSGK-L--VTQIRNLHHV-------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQ 413 (466)
Q Consensus 354 S~s--K~lgG~gdv~gG~vvg~~e-l--i~~l~~~~~~-------------~G~--~ls~~~A~l~lrgL~tl~~R~e~~ 413 (466)
|++ |+++|+ ++|+++++++ + +++++..... .|. .+++..+++++..++.+..+++++
T Consensus 183 S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~ 259 (388)
T 1b9h_A 183 SFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR 259 (388)
T ss_dssp ECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred EccCCCcccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 776 777663 4799998875 5 5655443211 022 256677777777888888888999
Q ss_pred HHHHHHHHHHHHcCCCcEE
Q 012321 414 NSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V~~ 432 (466)
.++++.+.+.|+++|++..
T Consensus 260 ~~~~~~l~~~L~~~~~~~~ 278 (388)
T 1b9h_A 260 DERWTLLSRLLGAIDGVVP 278 (388)
T ss_dssp HHHHHHHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHhccCCCccc
Confidence 9999999999999887643
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=198.76 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=161.4
Q ss_pred HHHHHHHHHhh----hC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSAL----EG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l----~g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...+++.++++ +| .++.+++++|++|+.+++.+++++||+|++..|+|.+....+ ...|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~ 143 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAI----KNQERKIIECELL 143 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHH----HTTTCEEEECCCE
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHH----HHcCCEEEecccc
Confidence 45566666665 46 256777777789999999999999999999999999866443 345777766643
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhc--
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-- 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-----~~pl~-- 345 (466)
.|+++|++++++.++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... .....
T Consensus 144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (399)
T 1c7n_A 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (399)
T ss_dssp EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred cCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence 57999999997435999999999999999998 89999999999999999999875322 11111
Q ss_pred ---cCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCC-CchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012321 346 ---LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGM----KTLHLRVQQQNST 416 (466)
Q Consensus 346 ---~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~-~ls~~~A~l~lrgL----~tl~~R~e~~~~n 416 (466)
.+.++++.|+||+++.+| .+.|+++++ ++++++++.....++. +.++..++.+...+ +.++.+.++..++
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (399)
T 1c7n_A 224 EQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKN 302 (399)
T ss_dssp HHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 356799999999998666 356888886 6799988877666542 34555444443333 3455666777888
Q ss_pred HHHHHHHHHc-CCCcE
Q 012321 417 ALRMAKILEA-HPKVK 431 (466)
Q Consensus 417 a~~La~~L~~-~p~V~ 431 (466)
++.+.+.|++ +|.+.
T Consensus 303 ~~~l~~~L~~~~~~~~ 318 (399)
T 1c7n_A 303 QRIVKDFFEVNHPEIK 318 (399)
T ss_dssp HHHHHHHHHHHCTTSB
T ss_pred HHHHHHHHHhhCCCCe
Confidence 9999999988 66653
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-22 Score=200.36 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=164.8
Q ss_pred hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------
Q 012321 211 TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~------ 282 (466)
...+|++.++++.+. ++.+++++|++|+.+++.+++++||+|+++++.|++.... ++..|+++..++.
T Consensus 62 ~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~ 137 (381)
T 1v2d_A 62 GLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPD----AFLAGAKARLVRLDLTPEG 137 (381)
T ss_dssp CCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEECEEETTE
T ss_pred CCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeCCCCCcc
Confidence 467999999999986 4677778888999999999999999999999999986543 3445777666543
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cchh--ccCCcEE
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL--SLGADLV 351 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~pl--~~gaDiv 351 (466)
.|+++|+++++++ +++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... .... ..+.|++
T Consensus 138 ~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~ 216 (381)
T 1v2d_A 138 FRLDLSALEKALTPR-TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216 (381)
T ss_dssp EECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEE
T ss_pred CCcCHHHHHHhcCcC-CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEE
Confidence 3799999999764 999999999999999986 88999999999999999999875432 1122 3478999
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHH
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na~~La~~L~ 425 (466)
+.|+||+++.+| .+.|++++++++++.++........+.++...+.+...++ .++...+++.++++.+.+.|+
T Consensus 217 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (381)
T 1v2d_A 217 VGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLR 295 (381)
T ss_dssp EEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998666 4579999999999988876654444445544433333333 345566777888999999998
Q ss_pred cC
Q 012321 426 AH 427 (466)
Q Consensus 426 ~~ 427 (466)
+.
T Consensus 296 ~~ 297 (381)
T 1v2d_A 296 AM 297 (381)
T ss_dssp HT
T ss_pred HC
Confidence 74
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-22 Score=199.65 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=158.6
Q ss_pred HHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l----~g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.++++ +|. + +.+++++|++|+..++.+++++||+|+++++.|++.... ++..|.++..++.
T Consensus 69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~ 144 (386)
T 1u08_A 69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA----IALSGGIVKRMAL 144 (386)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeec
Confidence 34555555555 463 4 677778888999999999999999999999999986543 3445777666542
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-------cchh--
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL-- 344 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-------~~pl-- 344 (466)
.|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ...+
T Consensus 145 ~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 223 (386)
T 1u08_A 145 QPPHFRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ 223 (386)
T ss_dssp CTTTCCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH
T ss_pred CcccCcCCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC
Confidence 589999999976 4999999999999999985 68999999999999999999875321 1111
Q ss_pred ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHH
Q 012321 345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRM 420 (466)
Q Consensus 345 ~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~L 420 (466)
..+.|+++.|+||+++++| .+.|+++++++++++++..........++..+..+...++ .+....++..++++.+
T Consensus 224 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (386)
T 1u08_A 224 LRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL 302 (386)
T ss_dssp HHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred ccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3478999999999998766 4579999999999988876654444444444433333333 3555667777888899
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 303 ~~~L~~~ 309 (386)
T 1u08_A 303 VNALNES 309 (386)
T ss_dssp HHHTTSS
T ss_pred HHHHHHC
Confidence 9999876
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=206.96 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=163.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCC-EEEEcCCCccchHHHHHhhcccC
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all----~pGD-~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.|.|+++..+..+++++++++++|.+ +.+++++|++|+.+++.+++ ++|| +|+++++.|+++...+.. +...
T Consensus 54 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~ 132 (400)
T 3vax_A 54 RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGR 132 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTT
T ss_pred cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhc
Confidence 35566666788899999999999974 67777788899999999987 8999 999999999987665543 3557
Q ss_pred CcEEEEeCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-hhccC
Q 012321 274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-ALSLG 347 (466)
Q Consensus 274 gi~v~~vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~-pl~~g 347 (466)
|+++..++.. |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.... ....
T Consensus 133 g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~- 210 (400)
T 3vax_A 133 GFEVDFLTPGPSGRISVEGVMERLRPD-TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP- 210 (400)
T ss_dssp TCEEEEECCCTTCCCCHHHHHTTCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-
T ss_pred CCeEEEEccCCCCCcCHHHHHHhcCCC-ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-
Confidence 8888888743 899999999874 9999999999999999999999999999999999999998654322 2233
Q ss_pred CcEEEeccccccccccCceEEEEE-eCh-HHH---HHHHHHH-------HHhCCCchHHHHHHHHHhhHH----HHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSIS-GSG-KLV---TQIRNLH-------HVLGGALNPNAAYLIIRGMKT----LHLRVQ 411 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vv-g~~-eli---~~l~~~~-------~~~G~~ls~~~A~l~lrgL~t----l~~R~e 411 (466)
.|+++.|++|.+++.+ .|+++ .++ ++. ..++... .....+.+....+.+...++. ++...+
T Consensus 211 ~d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 287 (400)
T 3vax_A 211 IDMISISGHKIGAPKG---VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQV 287 (400)
T ss_dssp CSEEEEETGGGTSCSS---CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CcEEEEeHHHhCCCCc---eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8999999999766544 35555 544 111 1111111 111223344333333333332 455667
Q ss_pred HHHHHHHHHHHHHHcCCCcE
Q 012321 412 QQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~ 431 (466)
+..++++++.+.|+ .+++.
T Consensus 288 ~~~~~~~~l~~~L~-~~~~~ 306 (400)
T 3vax_A 288 AAQDLRSRLLAGLA-STSFQ 306 (400)
T ss_dssp HHHHHHHHHHHHHT-TTTCE
T ss_pred HHHHHHHHHHHhhC-CCCEE
Confidence 77788888999998 77664
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-22 Score=201.05 Aligned_cols=211 Identities=15% Similarity=0.173 Sum_probs=161.8
Q ss_pred hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
....|++.+++++ |. ++.+++++|++|+..++.+++++||+|++++++|.+....+ ...|.++..++.
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~ 154 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVET 154 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEec
Confidence 3566777777665 53 45666677779999999999999999999999999866443 345777666642
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chhc---
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS--- 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl~--- 345 (466)
.|+++|+++++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+... ....
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLLVGK-TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhcccC-ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence 3799999999874 999999999999999987 899999999999999999998764321 1122
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t-l~~R~e~~~~na~~La~~ 423 (466)
.+.|+++.|+||+++.+| .+.|++++++++++.++..........++..++.+...++. +....++..++++.+.+.
T Consensus 234 ~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~ 312 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVER 312 (389)
T ss_dssp SSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 367999999999998666 45799999999999888776655445566655555444432 445566777888889998
Q ss_pred HHcC
Q 012321 424 LEAH 427 (466)
Q Consensus 424 L~~~ 427 (466)
|+++
T Consensus 313 L~~~ 316 (389)
T 1o4s_A 313 LKKM 316 (389)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-22 Score=202.11 Aligned_cols=215 Identities=16% Similarity=0.226 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 210 PTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~-----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
+.++.+.+.+.+.+|. ++.+++++|++|+..++.+++++||+|++..|.|.+....+ ...|.++..++.
T Consensus 71 ~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~ 146 (422)
T 3fvs_A 71 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSLKP 146 (422)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBC
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHH----HHcCCEEEEEeccc
Confidence 3445555555554443 35666666679999999999999999999999999866443 345666655532
Q ss_pred ---------------CCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012321 283 ---------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 283 ---------------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~--- 341 (466)
.|+++|+++++++ +++|++++|+||||.+. ++++|.++|+++|+++|+|++|+.....
T Consensus 147 ~~~~~G~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 225 (422)
T 3fvs_A 147 GPIQNGELGSSSNWQLDPMELAGKFTSR-TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225 (422)
T ss_dssp CCCCSSSCCBGGGSBCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred ccccccccccccCCCCCHHHHHhhcCCC-ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCC
Confidence 4899999999874 99999999999999999 6899999999999999999998753211
Q ss_pred --chhc----cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-----------
Q 012321 342 --KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----------- 404 (466)
Q Consensus 342 --~pl~----~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----------- 404 (466)
.... .+.++++.|+||.++.+| .+.|++++++++++.+...........++..++.+...++
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 304 (422)
T 3fvs_A 226 HISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSS 304 (422)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHH
Confidence 1111 245699999999998666 4579999999999998877665555555655554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 405 TLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 405 tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
.+..+.+++.++++.+.+.|+++ ++.
T Consensus 305 ~~~~~~~~~~~~~~~l~~~L~~~-g~~ 330 (422)
T 3fvs_A 305 YFVQFPQAMQRCRDHMIRSLQSV-GLK 330 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence 35666778888999999999987 443
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-22 Score=199.58 Aligned_cols=210 Identities=12% Similarity=0.159 Sum_probs=160.0
Q ss_pred HHHHHHHHHhhh----CC----Cc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSALE----GA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.+++++ |. ++ .+++++|++|+..++.+++++||+|++++++|++....+ ...|+++..++.
T Consensus 65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~ 140 (389)
T 1gd9_A 65 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPT 140 (389)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEEEecc
Confidence 456666666655 62 56 777778889999999999999999999999999866443 345666666542
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhc--
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS-- 345 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~~-----~pl~-- 345 (466)
.|+++|++++++ ++++|++++|+||||.+. ++++|.++|+++|+++|+|++|..+... ....
T Consensus 141 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 219 (389)
T 1gd9_A 141 YEEDEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD 219 (389)
T ss_dssp CGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred CCccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhcc
Confidence 379999999987 499999999999999998 5899999999999999999998765321 1122
Q ss_pred --cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHH
Q 012321 346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTA 417 (466)
Q Consensus 346 --~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na 417 (466)
.+.|+++.|+||+++.+| .+.|+++++++++++++........+.++...+.+...++ .+..+.+++.+++
T Consensus 220 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (389)
T 1gd9_A 220 GMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR 298 (389)
T ss_dssp TCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 356899999999998666 4579999999999998876655444555554444433333 3455566778888
Q ss_pred HHHHHHHHcC
Q 012321 418 LRMAKILEAH 427 (466)
Q Consensus 418 ~~La~~L~~~ 427 (466)
+.+.+.|+++
T Consensus 299 ~~l~~~L~~~ 308 (389)
T 1gd9_A 299 KLVWKRLNEM 308 (389)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999999886
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=201.45 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+....|++.+++++ |. + +.+++++|++|+.+++.+++++||+|+++.|.|++....+ ...|.++..+
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~ 138 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAA----RVASLRTFLI 138 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHH----HHcCCEEEEe
Confidence 45778888888877 75 3 5666666679999999999999999999999999865443 3457777776
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cchhc---
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--- 345 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~pl~--- 345 (466)
+. .|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ...+.
T Consensus 139 ~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 217 (376)
T 2dou_A 139 PLREDGLADLKAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG 217 (376)
T ss_dssp CBCTTSSBCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT
T ss_pred eCCCCCCCCHHHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 53 477888888865 4899999999999999986 67899999999999999999875321 11222
Q ss_pred -cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHH
Q 012321 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRM 420 (466)
Q Consensus 346 -~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~L 420 (466)
.+.++++.|+||+++.+| .+.|+++++++++++++......+.+.++..++.+...++ .+..+.+++.++++.+
T Consensus 218 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 296 (376)
T 2dou_A 218 AKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGM 296 (376)
T ss_dssp GGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 256799999999998666 4578999999999999887766655555655544444443 3555666778889999
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 297 ~~~L~~~ 303 (376)
T 2dou_A 297 AEALKGV 303 (376)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 9999876
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=202.60 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=173.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~--- 283 (466)
.++...+|+++++++++.++++++++|++|+..++.++ +++||+|+++.++|+++... +...|+++.+++..
T Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~ 111 (374)
T 3uwc_A 36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA----IVQAGATPVLVDSENGY 111 (374)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTS
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCC
Confidence 57889999999999999999999999999999999999 99999999999999986643 34568888888754
Q ss_pred --CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEeccc--c
Q 012321 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--K 357 (466)
Q Consensus 284 --D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~s--K 357 (466)
|+++++++++++ +++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|+| |
T Consensus 112 ~~d~~~l~~~~~~~-~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K 187 (374)
T 3uwc_A 112 VIDPEKIEAAITDK-TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLK 187 (374)
T ss_dssp SBCGGGTGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred CcCHHHHHHhCCCC-ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCC
Confidence 899999999874 88888 8999999999999999999999999999999876443322233 799999977 9
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHH------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~------------~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L 424 (466)
++++++. +|+++++ +++.++++..... ....+.++.+.+.+..++.++.+.++..++++.+.+.|
T Consensus 188 ~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 188 NLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp SSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988663 7888765 4677777665421 11224667777767677777888888889999999999
Q ss_pred HcCCC-cE
Q 012321 425 EAHPK-VK 431 (466)
Q Consensus 425 ~~~p~-V~ 431 (466)
++.+. +.
T Consensus 266 ~~~~~~~~ 273 (374)
T 3uwc_A 266 VDLSEFID 273 (374)
T ss_dssp GGGTTTEE
T ss_pred ccCCCeEE
Confidence 98876 54
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=201.70 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=164.2
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++...+|++++++++|. ++.+++++|++|+.+++.+++++||+|+++.++|.+.... +...|.++..++
T Consensus 59 ~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~ 134 (360)
T 3hdo_A 59 LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTL----AEVQGARVRTFG 134 (360)
T ss_dssp GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHHTCEEEEEC
T ss_pred hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHH----HHHCCCEEEEee
Confidence 4455566678999999999984 6788888888999999999999999999999999986643 344578888776
Q ss_pred CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch----hccCCcEEEecccc
Q 012321 282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSLGADLVLHSATK 357 (466)
Q Consensus 282 ~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p----l~~gaDivv~S~sK 357 (466)
..+...+++..+..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+....... ...+.++++.|+||
T Consensus 135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK 214 (360)
T 3hdo_A 135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK 214 (360)
T ss_dssp BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence 53321222222222367999999999999999999999999999999999999875221111 12356699999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.++.+| .+.|++++++++++.++.....+ ..++..++.+ ++..+.+..+.++..++++.+.+.|+++
T Consensus 215 ~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 284 (360)
T 3hdo_A 215 SYSLAG-MRIGLAIARPEVIAALDKIRDHY--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI 284 (360)
T ss_dssp TTSCTT-SCCEEEECCHHHHHHHHHHSCSC--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCc-cceeeEeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 998666 45789999999999888766443 3445444443 3334456677788888999999999987
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=204.27 Aligned_cols=228 Identities=19% Similarity=0.156 Sum_probs=172.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.+.|+....+..+++.+++++.+|. ++.+++++|++|+..++.+++++||+|++..+.|.+....+ ...|.+
T Consensus 91 ~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~----~~~g~~ 166 (421)
T 3l8a_A 91 IFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTI----RLNDHR 166 (421)
T ss_dssp CSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHH----HHTTEE
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHCCCE
Confidence 4678777778888999999988872 45667777779999999999999999999999999866444 334666
Q ss_pred EEEeCC--------CCHHHHHHhccCCCceEEEEeCCCCCCccc---ccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012321 277 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----- 340 (466)
Q Consensus 277 v~~vd~--------~D~e~Le~ai~~~~tklV~lesPsNPtG~v---~dl~~I~ela~~~gillIvD~t~a~~~~----- 340 (466)
+..++. .|+++|++++++.++++|++++|+||+|.+ .++++|.++|+++|++||+|++|.....
T Consensus 167 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 246 (421)
T 3l8a_A 167 LVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH 246 (421)
T ss_dssp EEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 555542 489999999983359999999999999998 4689999999999999999999865321
Q ss_pred cchhc-----cCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCC-CchHHHHHHHHH----hhHHHHHH
Q 012321 341 QKALS-----LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIR----GMKTLHLR 409 (466)
Q Consensus 341 ~~pl~-----~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~-~ls~~~A~l~lr----gL~tl~~R 409 (466)
..... .+.++++.|++|+++.+| ...|+++++ +++++.++......+. +.+++.+..+.. ..+.++.+
T Consensus 247 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~ 325 (421)
T 3l8a_A 247 HSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEEL 325 (421)
T ss_dssp CCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence 11111 245699999999998666 457888887 8898888876644432 445544333322 33446677
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 410 VQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~p~V~~V 433 (466)
.++..++++.+.+.|+++|.+..+
T Consensus 326 ~~~~~~~~~~l~~~L~~~~~i~~~ 349 (421)
T 3l8a_A 326 KTVIEGNIKLVIKELEAKTKIKVM 349 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceEe
Confidence 778888999999999887776544
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=203.21 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=160.2
Q ss_pred CCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all----~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
++...+..+++++++++++|.+ +.+++++|++|+.+++.++. ++||+|+++++.|++....+. .+...|+++.
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~ 116 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVE 116 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEE
Confidence 3334567899999999999975 56666778899999999987 899999999999998765553 3445688888
Q ss_pred EeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEE
Q 012321 279 VIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVL 352 (466)
Q Consensus 279 ~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv 352 (466)
.++. .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|++ |+|++|+.+.. .....++.|+++
T Consensus 117 ~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~ 194 (382)
T 4eb5_A 117 YIPVGKYGEVDVSFIDQKLRDD-TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLT 194 (382)
T ss_dssp EECBCTTSCBCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEE
T ss_pred EeccCCCCccCHHHHHHHhcCC-CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEE
Confidence 8764 4899999999874 99999999999999999999999999999999 99999875432 122234789999
Q ss_pred eccccccccccCceEEEEEeChHH-HHHHHH----HHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~----~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~La~~ 423 (466)
.|+||+++..| .|+++++++. +..+.. ......++.+....+.+...+ +.++.+.++..++++.+.+.
T Consensus 195 ~s~sK~~g~~g---~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4eb5_A 195 ISSNDIYGPKG---VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp EETGGGTCCSS---CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHhcCCCc---eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999876544 3666665542 111100 011111223333222222222 23456677788899999999
Q ss_pred HHcCCCcE
Q 012321 424 LEAHPKVK 431 (466)
Q Consensus 424 L~~~p~V~ 431 (466)
|++.|.+.
T Consensus 272 L~~~~~~~ 279 (382)
T 4eb5_A 272 VLKIEESY 279 (382)
T ss_dssp HTTSTTEE
T ss_pred HhhCCCeE
Confidence 99887764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=200.90 Aligned_cols=215 Identities=17% Similarity=0.180 Sum_probs=163.5
Q ss_pred CchhHHHHHHHHHhhhCCCc----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 208 GNPTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~----~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
..+..+++++++++++|.+. .+++++|++|+. ++.+++++||+|+++++.|.+.. +...+...|+++..++.
T Consensus 33 ~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~ 109 (384)
T 3zrp_A 33 FVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKRYPVNVKVLRPS 109 (384)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTTSSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHHcCCcEEEecCC
Confidence 35678899999999999753 667777889999 99999999999999999987632 33445667888888864
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK 357 (466)
.|+++|+++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ......+.|+++.|+||
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 189 (384)
T 3zrp_A 110 PGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQK 189 (384)
T ss_dssp TTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTS
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcc
Confidence 3899999999874599999999999999999999999999999999999999876543 23334579999999999
Q ss_pred ccccccCceEEEEEeChHHHHHH-------------HHHHHHh-------C---CCchHHHHHHHHHhhHH-----HHHH
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQI-------------RNLHHVL-------G---GALNPNAAYLIIRGMKT-----LHLR 409 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l-------------~~~~~~~-------G---~~ls~~~A~l~lrgL~t-----l~~R 409 (466)
+++|+.+ .|++++++++++++ ..+.... + ++.+......+...++. ++..
T Consensus 190 ~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~ 267 (384)
T 3zrp_A 190 ALGSAAG--LGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENR 267 (384)
T ss_dssp TTCCCSS--EEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccCCCc--eEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 9976542 68999999988877 3322211 0 13333322222222222 4566
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 012321 410 VQQQNSTALRMAKILEAH 427 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~ 427 (466)
.++..++++.+.+.|+++
T Consensus 268 ~~~~~~~~~~l~~~L~~~ 285 (384)
T 3zrp_A 268 IKRHTMVASAIRAGLEAL 285 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 777888899999999886
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=203.26 Aligned_cols=211 Identities=14% Similarity=0.181 Sum_probs=171.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~--- 283 (466)
.++..+++|+.+++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...+ ...|.++.+++..
T Consensus 34 ~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~ 109 (373)
T 3frk_A 34 LGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAV----SYTGAKPIFVEPDIRT 109 (373)
T ss_dssp SSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHH----HHHSCEEEEECEETTT
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEeccccc
Confidence 56889999999999999999999999999999999999 899999999999999976443 3457787777643
Q ss_pred ---CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEeccc--
Q 012321 284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT-- 356 (466)
Q Consensus 284 ---D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~s-- 356 (466)
|+++|+++++++ +++|+ |+||+|.+.|+++|.++|+++|+++|+|++++.+........| .|+++.|++
T Consensus 110 ~~~d~~~l~~~l~~~-~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 185 (373)
T 3frk_A 110 YNIDPSLIESAITEK-TKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPA 185 (373)
T ss_dssp TEECGGGTGGGCCTT-EEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred cCcCHHHHHHhcCCC-CeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCC
Confidence 889999999874 99988 6889999999999999999999999999999876544333444 799999966
Q ss_pred cccccccCceEEEEEeC-hHHHHHHHHHHHHh------------CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~------------G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~ 423 (466)
|++++++ .+|+++++ ++++++++...... ...+.++.+.+.+..++.++.+.++..++++++.+.
T Consensus 186 K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (373)
T 3frk_A 186 KNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAG 263 (373)
T ss_dssp SSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CccCccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998855 37888876 56777777654311 123467777777667777777888888999999999
Q ss_pred HHcCC
Q 012321 424 LEAHP 428 (466)
Q Consensus 424 L~~~p 428 (466)
|++.+
T Consensus 264 l~~~~ 268 (373)
T 3frk_A 264 INNPN 268 (373)
T ss_dssp CCCTT
T ss_pred hccCc
Confidence 98876
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-22 Score=199.04 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=163.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEE
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v 277 (466)
+.|+..+...++.+.+.+.+.+| .++.+++++|++|+..++.+++++||+|+++.+.|.+....+ ...|.++
T Consensus 54 ~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~ 129 (377)
T 3fdb_A 54 FGYQPDGSLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLL----SATQREG 129 (377)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHH----HHHTCCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHH----HHcCCEE
Confidence 44554223444444454444433 357788888889999999999999999999999999866443 3457777
Q ss_pred EEeCCC---CHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----hh--
Q 012321 278 TVIDPA---DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL-- 344 (466)
Q Consensus 278 ~~vd~~---D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~-----pl-- 344 (466)
..++.. |+++|+++++++ +++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....... ++
T Consensus 130 ~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 208 (377)
T 3fdb_A 130 IFIDATGGINLHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS 208 (377)
T ss_dssp EEEECTTSCCHHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSC
T ss_pred EEccCCCCCCHHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHH
Confidence 777654 899999999875 899999999999999985 6778888999999999999987532211 11
Q ss_pred --ccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 012321 345 --SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA 417 (466)
Q Consensus 345 --~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na 417 (466)
..+.++++.|+||.++.+|. +.|+++. ++++++.++........+.++..++.+...++ .+..+.++..+++
T Consensus 209 ~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 287 (377)
T 3fdb_A 209 DTAASVCITITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNH 287 (377)
T ss_dssp HHHHHHEEEEECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 12345999999999977763 4676554 78898888876655545556655554444333 3566777888899
Q ss_pred HHHHHHHHc-CCCcE
Q 012321 418 LRMAKILEA-HPKVK 431 (466)
Q Consensus 418 ~~La~~L~~-~p~V~ 431 (466)
+.+.+.|++ .|.+.
T Consensus 288 ~~l~~~L~~~~~~~~ 302 (377)
T 3fdb_A 288 DFLLHEIPKRIPGAK 302 (377)
T ss_dssp HHHHHHHHHHSTTCE
T ss_pred HHHHHHHHhhCCCce
Confidence 999999988 66654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=200.35 Aligned_cols=221 Identities=16% Similarity=0.157 Sum_probs=166.1
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCC--EEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD--~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+|...+|++++++++|.+..+++++|++|+.+++.+++.+|| .|+++.+.|...+... ......|+++..++.
T Consensus 46 ~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 124 (357)
T 3lws_A 46 GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLKELHPIETILVGAADRL 124 (357)
T ss_dssp ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHSSCEEEECSCTTSC
T ss_pred ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhhhccCcEEEEecCCCCC
Confidence 588999999999999999899999999999999999999998 6777666655432210 012234777777753
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC------CCccchhccCCcEEE
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVL 352 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPt-G~v~d---l~~I~ela~~~gillIvD~t~a~------~~~~~pl~~gaDivv 352 (466)
.|+++|+++. + +++|++++|+||+ |.+.+ +++|.++|+++|++||+|++|.. +.....+..+.|+++
T Consensus 125 ~d~~~l~~~~--~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~ 201 (357)
T 3lws_A 125 MTLDEIKALP--D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIY 201 (357)
T ss_dssp CCHHHHHTCC--S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEE
T ss_pred cCHHHHhcCc--C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEE
Confidence 4899999873 3 8999999999998 98874 88999999999999999999751 111222334579999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l--s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V 430 (466)
.|+||+++++. ||+++++++++++++.++..++... ....+..++..++....++++..++++++.+.|+++|++
T Consensus 202 ~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~ 278 (357)
T 3lws_A 202 ISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGV 278 (357)
T ss_dssp EESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTE
T ss_pred EeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999997764 5999999999999988777665432 122233334556665566777888999999999999888
Q ss_pred EEEeCC
Q 012321 431 KRVHYP 436 (466)
Q Consensus 431 ~~V~~P 436 (466)
+.+..|
T Consensus 279 ~~~~~~ 284 (357)
T 3lws_A 279 HTTPEV 284 (357)
T ss_dssp EEESSS
T ss_pred eeccCC
Confidence 543333
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=202.16 Aligned_cols=213 Identities=18% Similarity=0.261 Sum_probs=173.6
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.+...++++++++++|.++.+++++|++|+..++.++ +++||+|+++.+.|+++...+ ...|+++..++.
T Consensus 62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~ 137 (399)
T 2oga_A 62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAV----SATGATPVPVEPHEDHP 137 (399)
T ss_dssp SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCSSSS
T ss_pred chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH----HHCCCEEEEEecCCCCC
Confidence 4778999999999999989999999999999999999 899999999999999865433 446778777652
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEecc--cc
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK 357 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~--sK 357 (466)
.|+++|+++++++ +++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|+ +|
T Consensus 138 ~~d~~~l~~~i~~~-~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK 213 (399)
T 2oga_A 138 TLDPLLVEKAITPR-TRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGK 213 (399)
T ss_dssp SBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTS
T ss_pred CcCHHHHHHhcCCC-CeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCc
Confidence 3799999999874 89887 5789999999999999999999999999999866432222233 69999999 69
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHHh----------C--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~----------G--~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L 424 (466)
+++++| .+|+++++ ++++++++...... | ..+++..++++...++.+....++..++++++.+.|
T Consensus 214 ~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L 291 (399)
T 2oga_A 214 NLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGL 291 (399)
T ss_dssp SSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999877 47888875 88888887654321 1 245778888877888888878888888999999999
Q ss_pred HcCCCcE
Q 012321 425 EAHPKVK 431 (466)
Q Consensus 425 ~~~p~V~ 431 (466)
++.|+++
T Consensus 292 ~~~~g~~ 298 (399)
T 2oga_A 292 AGLPGIG 298 (399)
T ss_dssp TTCTTCB
T ss_pred ccCCCcc
Confidence 9877653
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-22 Score=198.34 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=163.6
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA- 283 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~- 283 (466)
|+++....|++++++++|. ++.+++++|++++.+++.++ +||+|++..|.|.+....+ ...|.++..++..
T Consensus 56 y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~ 129 (364)
T 1lc5_A 56 YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWSLRE 129 (364)
T ss_dssp CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHH----HHTTCEEEEEECCG
T ss_pred CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHH----HHcCCeEEEEeCCc
Confidence 3445678999999999986 35666677779999999888 7899999999999865443 3457777666532
Q ss_pred ----C-HHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc--cchh----ccCCc
Q 012321 284 ----D-MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--QKAL----SLGAD 349 (466)
Q Consensus 284 ----D-~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~--~~pl----~~gaD 349 (466)
+ ++++.+.+++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ...+ ..+.+
T Consensus 130 ~~~~~~l~~~~~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 208 (364)
T 1lc5_A 130 ADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHI 208 (364)
T ss_dssp GGTTCCCTTHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTE
T ss_pred ccccchhHHHHHhccC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCE
Confidence 2 3556666655 4899999999999999998 89999999999999999999875331 1111 24678
Q ss_pred EEEeccccccccccCceEEEEE-eChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vv-g~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t---l~~R~e~~~~na~~La~~L~ 425 (466)
+++.|+||+++.+| .+.|+++ ++++++++++.....+ ..++..++.+...++. ++.+.+++.++++.+.+.|+
T Consensus 209 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 285 (364)
T 1lc5_A 209 WVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMPW--SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALC 285 (364)
T ss_dssp EEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCTT--CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECchhhcCCc-cceEEEEECCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998666 4578998 9999998887765433 4566666666555543 55666777888999999999
Q ss_pred cCCCcE
Q 012321 426 AHPKVK 431 (466)
Q Consensus 426 ~~p~V~ 431 (466)
++|++.
T Consensus 286 ~~~~~~ 291 (364)
T 1lc5_A 286 QLPLLT 291 (364)
T ss_dssp TSTTEE
T ss_pred cCCCCE
Confidence 888764
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=198.61 Aligned_cols=219 Identities=18% Similarity=0.194 Sum_probs=163.0
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCE--EEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~--VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.++...+|++++++++|.+..+++++|++|+.+++.+++.+||+ |+++.+.|...+... ......|+++..++.
T Consensus 46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~ 124 (359)
T 3pj0_A 46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGTANQ 124 (359)
T ss_dssp BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSCTTS
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHHHhcCceEEecCCcCC
Confidence 46889999999999999988899999999999999999989987 555555443321100 011224777777764
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCC-cccccHHH---HHHHHHhcCCEEEEeCCCCCCC------ccchhccCCcEE
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKL---VSDLCHKKGAIVCIDGTFATPL------NQKALSLGADLV 351 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPt-G~v~dl~~---I~ela~~~gillIvD~t~a~~~------~~~pl~~gaDiv 351 (466)
.|+++|+++ .+ ++++|++|+|+||+ |.+.++++ |.++|+++|++||+|+++.... ....+..+.|++
T Consensus 125 ~~d~~~l~~~-~~-~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~ 202 (359)
T 3pj0_A 125 LLTIDDIKSL-RE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSV 202 (359)
T ss_dssp CCCHHHHHTC-SS-CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEE
T ss_pred CcCHHHHHhc-cC-CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEE
Confidence 389999988 55 59999999999998 78887554 5999999999999999875322 122233578999
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc---hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL---NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l---s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
+.|+||+++++. +|+++++++++++++..+...+... .... ..+...++....++++..++++++.+.|+++|
T Consensus 203 ~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~ 278 (359)
T 3pj0_A 203 YVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYGGDLISLYPYI-LSADYYFEKRIGKMAEYFEAAKGLAERFNSCS 278 (359)
T ss_dssp EEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHGGGHHHHHHHHHHHHHHHHTST
T ss_pred EEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhCCCcchhHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCC
Confidence 999999998874 5899999999999988776655332 2222 22233455545677788889999999999998
Q ss_pred CcEEE
Q 012321 429 KVKRV 433 (466)
Q Consensus 429 ~V~~V 433 (466)
++...
T Consensus 279 g~~~~ 283 (359)
T 3pj0_A 279 GVKTV 283 (359)
T ss_dssp TEEEE
T ss_pred Cceee
Confidence 87543
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=198.84 Aligned_cols=213 Identities=15% Similarity=0.148 Sum_probs=158.0
Q ss_pred HHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g--~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...+++.+++++ | . ++.+++++|++|+.+++.+++++||+|++++++|.+....+ ...|+++..++.
T Consensus 80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~ 155 (406)
T 1xi9_A 80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTI 155 (406)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecC
Confidence 345666666554 3 2 46666677779999999999999999999999998865433 345666665542
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cchhc--cC
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LG 347 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~pl~--~g 347 (466)
.|+++|+++++++ +++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.... ..... .+
T Consensus 156 ~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 234 (406)
T 1xi9_A 156 EEEDWQPDIDDIRKKITDR-TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD 234 (406)
T ss_dssp GGGTSEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred CCcCCcCCHHHHHHhhCcC-ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCC
Confidence 3899999999874 999999999999999876 89999999999999999999876432 11122 35
Q ss_pred C-cEEEeccccccccccCceEEEEE--eCh----HHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012321 348 A-DLVLHSATKFIGGHNDVLAGSIS--GSG----KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST 416 (466)
Q Consensus 348 a-Divv~S~sK~lgG~gdv~gG~vv--g~~----eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~n 416 (466)
. |+++.|+||+++++|. +.|+++ +++ +++++++...... ...++..++.+...+ +.+....++..++
T Consensus 235 ~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 312 (406)
T 1xi9_A 235 VPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKER 312 (406)
T ss_dssp SCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeccccccCCCcc-EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6 8999999999986663 468888 888 9999888766543 333444333333333 3455566777888
Q ss_pred HHHHHHHHHcCCCcE
Q 012321 417 ALRMAKILEAHPKVK 431 (466)
Q Consensus 417 a~~La~~L~~~p~V~ 431 (466)
++.+.+.|++.|.+.
T Consensus 313 ~~~l~~~L~~~~~~~ 327 (406)
T 1xi9_A 313 RDYIYKRLNEIPGIS 327 (406)
T ss_dssp HHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHhCCCCe
Confidence 899999999887654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=199.86 Aligned_cols=218 Identities=17% Similarity=0.122 Sum_probs=161.8
Q ss_pred CchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 208 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all----~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
..+...+|++++++++|.+ +.+++++|++|+..++.++. ++||+|+++.+.|++....+. .+...|+++..++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~ 120 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVP 120 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEc
Confidence 3456789999999999974 67777888899999999987 799999999999998655443 2345688888776
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC--CEEEEeCCCCCCCc-cchhccCCcEEEe
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLH 353 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~g--illIvD~t~a~~~~-~~pl~~gaDivv~ 353 (466)
. .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++| +++|+|++|+.+.. .....++.|+++.
T Consensus 121 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~ 199 (384)
T 1eg5_A 121 VDSRGVVKLEELEKLVDED-TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASF 199 (384)
T ss_dssp BCTTSCBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEE
T ss_pred cCCCCccCHHHHHHHhCCC-CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEe
Confidence 4 4899999999874 999999999999999999999999999999 99999999763321 1222347899999
Q ss_pred ccccccccccCceEEEEEeChHH--HHHHHHH---HHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Q 012321 354 SATKFIGGHNDVLAGSISGSGKL--VTQIRNL---HHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~el--i~~l~~~---~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~La~~L 424 (466)
|+||+++.+| .|++++++++ ...+... ......+.+....+.+...++ .+....++..++++.+.+.|
T Consensus 200 s~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 276 (384)
T 1eg5_A 200 SAHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL 276 (384)
T ss_dssp EGGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999987665 4888888775 2221110 001122344443333333333 34566777888999999999
Q ss_pred HcCCCcE
Q 012321 425 EAHPKVK 431 (466)
Q Consensus 425 ~~~p~V~ 431 (466)
++ ++++
T Consensus 277 ~~-~g~~ 282 (384)
T 1eg5_A 277 MN-LGAH 282 (384)
T ss_dssp HT-TTCE
T ss_pred CC-CCeE
Confidence 87 5553
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=203.03 Aligned_cols=211 Identities=9% Similarity=0.078 Sum_probs=160.0
Q ss_pred hHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g~-----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
....|++.+++++ |. ++.+++++|++|+.+++.+++++||+|+++.|.|.+....+ ...|.++..++
T Consensus 86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~ 161 (404)
T 2o1b_A 86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGV----LLADGKPVPLN 161 (404)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHH----HHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHCCCEEEEec
Confidence 3456777777766 75 34566666679999999999999999999999999966543 34566666554
Q ss_pred C------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cchhcc--
Q 012321 282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL-- 346 (466)
Q Consensus 282 ~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~pl~~-- 346 (466)
. .|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ......
T Consensus 162 ~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 240 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN 240 (404)
T ss_dssp CCTTTCCCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT
T ss_pred cCcccCcCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 2 467888888875 4899999999999999985 78899999999999999999876432 112222
Q ss_pred --CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 012321 347 --GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM 420 (466)
Q Consensus 347 --gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t----l~~R~e~~~~na~~L 420 (466)
+.++++.|+||+++.+| .+.|+++++++++++++........+.++...+.+...++. ++.+.++..++++.+
T Consensus 241 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 319 (404)
T 2o1b_A 241 GKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRF 319 (404)
T ss_dssp HHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecchhccCch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45799999999998666 45789999999999998877666555666655555444433 555566677888899
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|+++
T Consensus 320 ~~~L~~~ 326 (404)
T 2o1b_A 320 EAMLAKA 326 (404)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999876
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=201.24 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=164.4
Q ss_pred chhHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 209 NPTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g-------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
.+...++++.++++++ .++.+++++|++|+.+++..++++||+|+++.|.|.+.... +...|+++..++
T Consensus 95 ~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~ 170 (427)
T 3dyd_A 95 SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTL----AESMGIEVKLYN 170 (427)
T ss_dssp TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEe
Confidence 3457789999999987 35677788888999999999999999999999999885533 344577766654
Q ss_pred C-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhcc
Q 012321 282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL 346 (466)
Q Consensus 282 ~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~ 346 (466)
. .|+++|+++++++ +++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... .....+
T Consensus 171 ~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~ 249 (427)
T 3dyd_A 171 LLPEKSWEIDLKQLEYLIDEK-TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL 249 (427)
T ss_dssp EEGGGTTEECHHHHHSSCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred cccccCCCCCHHHHHHHhccC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence 2 3899999999875 999999999999999999 99999999999999999999875321 111223
Q ss_pred CCc---EEEeccccccccccCceEEEEEeC-------hHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012321 347 GAD---LVLHSATKFIGGHNDVLAGSISGS-------GKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ 411 (466)
Q Consensus 347 gaD---ivv~S~sK~lgG~gdv~gG~vvg~-------~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e 411 (466)
+.| +++.|+||.++++|. +.|+++++ +++++.+....... ...++..+..+...+ +.+..+.+
T Consensus 250 ~~~~~vi~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~ 327 (427)
T 3dyd_A 250 STDVPILSCGGLAKRWLVPGW-RLGWILIHDRRDIFGNEIRDGLVKLSQRI-LGPCTIVQGALKSILCRTPGEFYHNTLS 327 (427)
T ss_dssp CSSCCEEEEEESTTTSSCGGG-CCEEEEEECSTTSSHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCCcEEEEeeccccCCCcCc-ceEEEEecCcchhhHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333 778999999988874 45777765 46777776654332 233444444333333 44667778
Q ss_pred HHHHHHHHHHHHHHcCCCcEEE
Q 012321 412 QQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~~V 433 (466)
++.++++.+.+.|+++|.+..+
T Consensus 328 ~~~~~~~~l~~~L~~~~g~~~~ 349 (427)
T 3dyd_A 328 FLKSNADLCYGALAAIPGLRPV 349 (427)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceec
Confidence 8888999999999999887543
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-22 Score=197.41 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=164.7
Q ss_pred CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
.+|+++...+++++++++++. ++.+++++|++|+.+++..+ |+|+++.+.|.+....+ ...|+++..++
T Consensus 56 ~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~----~~~g~~~~~~~~ 127 (361)
T 3ftb_A 56 GVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINA----KKHGVSVVFSYL 127 (361)
T ss_dssp GSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHH----HHTTCEEEEEEC
T ss_pred cCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHH----HHcCCeEEEeec
Confidence 344567789999999999985 45666677779999988776 99999999999865443 34577777765
Q ss_pred ----CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc---cchh----ccC
Q 012321 282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---QKAL----SLG 347 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~---~~pl----~~g 347 (466)
..+++++++++++ +++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... .... ..+
T Consensus 128 ~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 205 (361)
T 3ftb_A 128 DENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYS 205 (361)
T ss_dssp CTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCS
T ss_pred CcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCC
Confidence 3467999999976 899999999999999985 67788888899999999999874332 1111 223
Q ss_pred CcEEEeccccccccccCceEEEEE-eChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vv-g~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~ 423 (466)
.++++.|+||.++.+| .+.|+++ +++++++.++.....+ +.++..++.+...+ +.+..+.++..++++.+.+.
T Consensus 206 ~~i~~~s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (361)
T 3ftb_A 206 CLFIIRAMTKFFAMPG-IRFGYGITNNKEIAAKIKAKQNPW--NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEE 282 (361)
T ss_dssp SEEEEEESSSTTSCGG-GCCEEEEESCHHHHHHHHTTSCTT--CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeChhhcCCCC-cceeEEEeCCHHHHHHHHhhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999998666 3567777 8999998887655443 34555555444443 45667778888999999999
Q ss_pred HHcCCCcEEEeC
Q 012321 424 LEAHPKVKRVHY 435 (466)
Q Consensus 424 L~~~p~V~~V~~ 435 (466)
|+++|.+.++..
T Consensus 283 l~~~~~~~~~~~ 294 (361)
T 3ftb_A 283 LNKIGFIKRVFS 294 (361)
T ss_dssp HHHSSSEEEEEC
T ss_pred HHhCCCCceecC
Confidence 999988863443
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=198.82 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~-----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
+....|++.+++++ |. ++.+++++|++|+.+++.+++++||+|+++.+.|++....+ ...|.++..+
T Consensus 75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~ 150 (412)
T 2x5d_A 75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGA----VIAGAQVRSV 150 (412)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHHTCEEEEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEe
Confidence 33567777777776 73 36777788889999999999999999999999999866443 3356666665
Q ss_pred CC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhc
Q 012321 281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS 345 (466)
Q Consensus 281 d~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~ 345 (466)
+. .|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... ....
T Consensus 151 ~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 229 (412)
T 2x5d_A 151 PLVPGIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ 229 (412)
T ss_dssp ECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred ecCCccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh
Confidence 43 257889999986 4899999999999999986 688999999999999999998764321 1111
Q ss_pred ----cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 012321 346 ----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA 417 (466)
Q Consensus 346 ----~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na 417 (466)
.+.|+++.|+||+++.+| .+.|++++++++++.++......+.+.++...+.+...++ .+....+++.+++
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 308 (412)
T 2x5d_A 230 VPGAKDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRR 308 (412)
T ss_dssp STTGGGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred ccCccCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 367899999999998666 3579999999999998877766555556655554444333 3566667778888
Q ss_pred HHHHHHHHcC
Q 012321 418 LRMAKILEAH 427 (466)
Q Consensus 418 ~~La~~L~~~ 427 (466)
+.+.+.|+++
T Consensus 309 ~~l~~~L~~~ 318 (412)
T 2x5d_A 309 DVLVKGLREA 318 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 8899988864
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=196.36 Aligned_cols=209 Identities=14% Similarity=0.144 Sum_probs=160.8
Q ss_pred HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...|++.+++++ | .++.+++++|++|+.+++.+++++||+|+++.|.|.+....+ ...|+++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~ 145 (391)
T 3h14_A 70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQIL----RALGLVPVDLPTA 145 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecC
Confidence 455666666554 3 266778888889999999999999999999999999866443 456777777653
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cchhcc-CC
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL-GA 348 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~pl~~-ga 348 (466)
.|+++|+++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... ...... +.
T Consensus 146 ~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 221 (391)
T 3h14_A 146 PENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE 221 (391)
T ss_dssp GGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred cccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence 278888766 3899999999999999987 88899999999999999999875332 122222 45
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrgL~tl~~R~e~~~~na~~La~~L~ 425 (466)
++++.|+||.++.+| .+.|++++++++++.++........+.++..++.+ ++..+.+..+.+++.++++.+.+.|+
T Consensus 222 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 300 (391)
T 3h14_A 222 CYVINSFSKYFSMTG-WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLP 300 (391)
T ss_dssp SEEEEESSSTTCCTT-SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhccCCcc-ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999998666 45799999999999998877766666666554443 33445677777888889999999998
Q ss_pred cCCC
Q 012321 426 AHPK 429 (466)
Q Consensus 426 ~~p~ 429 (466)
+++.
T Consensus 301 ~~~~ 304 (391)
T 3h14_A 301 KAGF 304 (391)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 7643
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=197.10 Aligned_cols=210 Identities=15% Similarity=0.187 Sum_probs=154.1
Q ss_pred HHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 212 TVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 212 ~~~Lee~lA~l----~g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
...|++.++++ +|. + +.+++++|++|+.+++.+++++||+|+++.+.|++....+ ...|+++..++.
T Consensus 64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~----~~~g~~~~~v~~ 139 (411)
T 2o0r_A 64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVV----AMAGAHRVTVPL 139 (411)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEeec
Confidence 34555555555 463 3 5666666779999999999999999999999999865443 345666665542
Q ss_pred --------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ch--h
Q 012321 283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA--L 344 (466)
Q Consensus 283 --------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~p--l 344 (466)
.|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... .. +
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence 589999999987 4999999999999999986 589999999999999999998754321 11 1
Q ss_pred --ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHH---HHHH-hhHHHHHHHHHHHHHHH
Q 012321 345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY---LIIR-GMKTLHLRVQQQNSTAL 418 (466)
Q Consensus 345 --~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~---l~lr-gL~tl~~R~e~~~~na~ 418 (466)
..+.|+++.|++|+++.+| .+.|++++++++++.++......+.+.++.... .+++ +.+.+....++..++++
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 297 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRD 297 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 1457999999999998776 467999999999998887665433333332222 2232 22335555667778888
Q ss_pred HHHHHHHcC
Q 012321 419 RMAKILEAH 427 (466)
Q Consensus 419 ~La~~L~~~ 427 (466)
.+.+.|+++
T Consensus 298 ~l~~~L~~~ 306 (411)
T 2o0r_A 298 RLAAGLTEI 306 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888888765
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=204.25 Aligned_cols=211 Identities=17% Similarity=0.165 Sum_probs=159.7
Q ss_pred HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhc--cCCC--EEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALV--PAGG--HIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 212 ~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all--~pGD--~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
...+++.++++++ .++.+++++|++|+.+++.+++ ++|| +|+++.++|.+....+ ...|+++..
T Consensus 84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~----~~~g~~~~~ 159 (437)
T 3g0t_A 84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC----RILGQKFES 159 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH----HHHTCCCEE
T ss_pred hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH----HHcCCEEEE
Confidence 4677777777665 3566667777799999999998 9999 9999999999866444 334666666
Q ss_pred eCC------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---------
Q 012321 280 IDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--------- 341 (466)
Q Consensus 280 vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~--------- 341 (466)
++. .|+++|+++++..++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.....
T Consensus 160 v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 239 (437)
T 3g0t_A 160 FDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEP 239 (437)
T ss_dssp EEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSS
T ss_pred EeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccccc
Confidence 543 27899999994335999999999999999986 777899999999999999998753221
Q ss_pred ---chh--ccCCcEEEeccccccccccCceEEEEEeChHHHH-H-----------------HHHHHHHhCCCchHHHHHH
Q 012321 342 ---KAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-Q-----------------IRNLHHVLGGALNPNAAYL 398 (466)
Q Consensus 342 ---~pl--~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~-----------------l~~~~~~~G~~ls~~~A~l 398 (466)
..+ ..+.++++.|+||+++.+| .+.|++++++++++ . ++........+.++..++.
T Consensus 240 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 318 (437)
T 3g0t_A 240 LYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWG 318 (437)
T ss_dssp CCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHH
T ss_pred chhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHH
Confidence 111 2466799999999998666 45799999999888 7 6665554444555655555
Q ss_pred HHHhhHH-------HHHHHHHHHHHHHHHHHHHHcC
Q 012321 399 IIRGMKT-------LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 399 ~lrgL~t-------l~~R~e~~~~na~~La~~L~~~ 427 (466)
+...++. +..+.+++.++++.+.+.|+++
T Consensus 319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 354 (437)
T 3g0t_A 319 MAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN 354 (437)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5444443 5667788888999999999987
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=196.17 Aligned_cols=213 Identities=16% Similarity=0.120 Sum_probs=161.4
Q ss_pred chhHHHHHHHHHhhhC-----CC-cEEEeCCHHHHHHHHHHHhccCC-----CEEEEcCCCccchHHHHHhhcccCCcEE
Q 012321 209 NPTTVVVEEKMSALEG-----AE-STVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGITA 277 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g-----~e-~~v~~~SG~aAi~~al~all~pG-----D~VLv~~~~y~~t~~~~~~~l~~~gi~v 277 (466)
.+.++++.+.+.+.+| .+ +.+++++|++|+.+++.+++++| |+|+++.|.|.+.... +...|.++
T Consensus 69 ~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~----~~~~g~~~ 144 (396)
T 3jtx_A 69 PELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGA----TLLGGGEI 144 (396)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHH----HHHTTCEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHH----HHHcCCEE
Confidence 3445555565555556 34 67777777799999999999997 7999999999886543 34467777
Q ss_pred EEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCCccc--h---
Q 012321 278 TVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQK--A--- 343 (466)
Q Consensus 278 ~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~---~I~ela~~~gillIvD~t~a~~~~~~--p--- 343 (466)
..++. .|+++|+++++++ +++|++++|+||||.+++.+ +|.++|+++|+++|+|++|....... +
T Consensus 145 ~~v~~~~~g~~~d~~~l~~~~~~~-~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 223 (396)
T 3jtx_A 145 HFANCPAPSFNPDWRSISEEVWKR-TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGC 223 (396)
T ss_dssp EEEECCTTTCCCCGGGSCHHHHHT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCH
T ss_pred EEeecCCCCCccCHHHHHHhhccC-cEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchH
Confidence 66643 3778888888774 99999999999999998755 59999999999999999987643211 1
Q ss_pred h--------ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHH
Q 012321 344 L--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQ 412 (466)
Q Consensus 344 l--------~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~ 412 (466)
+ ..+.++++.|+||.++.+| .+.|++++++++++.++......+.+.++..++.+...+ +.+..+.++
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 302 (396)
T 3jtx_A 224 LQAAAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRL 302 (396)
T ss_dssp HHHHHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HhhhhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 2567899999999988776 457899999999999988777766666666555544433 456667777
Q ss_pred HHHHHHHHHHHHHcC
Q 012321 413 QNSTALRMAKILEAH 427 (466)
Q Consensus 413 ~~~na~~La~~L~~~ 427 (466)
+.++.+.+.+.|+++
T Consensus 303 ~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 303 YQEKFERVIPILQQV 317 (396)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888999999875
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-21 Score=196.77 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=155.1
Q ss_pred HHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 212 TVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 212 ~~~Lee~lA~l----~g~----e-~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
...|++.++++ +|. + +.+++++|++|+.+++.+++++||+|++..|.|++....+ ...|.++..++
T Consensus 79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~ 154 (429)
T 1yiz_A 79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPL 154 (429)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeC
Confidence 34555555555 462 4 5666666679999999999999999999999999866443 34566665553
Q ss_pred --------------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012321 282 --------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (466)
Q Consensus 282 --------------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~---- 340 (466)
..|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.....
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 233 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE 233 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC
T ss_pred CcccccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence 2579999999976 4999999999999999984 89999999999999999999875321
Q ss_pred ---cchh--ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-----------
Q 012321 341 ---QKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----------- 404 (466)
Q Consensus 341 ---~~pl--~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~----------- 404 (466)
...+ ..+.|+++.|+||.++++| .+.|++++++++++.++........+.++..+..+...++
T Consensus 234 ~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 312 (429)
T 1yiz_A 234 HIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPEC 312 (429)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTS
T ss_pred CcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHH
Confidence 1111 2467899999999998776 4579999999999988876654444444444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+....++..++++.+.+.|+++
T Consensus 313 ~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 313 YFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555566777888888888875
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=196.19 Aligned_cols=215 Identities=9% Similarity=0.021 Sum_probs=158.2
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.+....+++++++++|.+ +.+++++|++|+.+++.+++++||+|+++++.|.+.. +...+...|+++..++.
T Consensus 41 ~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 118 (392)
T 2z9v_A 41 QLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNE 118 (392)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCC
Confidence 345789999999999973 5666677789999999999999999999999998753 22333445777666643
Q ss_pred -CCHHHHHHhccC-CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 283 -ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 283 -~D~e~Le~ai~~-~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
.|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......+.|+++.|+||++
T Consensus 119 ~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~ 198 (392)
T 2z9v_A 119 AIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCL 198 (392)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTT
T ss_pred CCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccc
Confidence 589999999942 2489999999999999999999999999999999999999875432 2223457899999999987
Q ss_pred ccccCceEEEEEeChHHHHHHHHHH--------------------HHhCCCchHHHHH---HHHHhhHH--HHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAY---LIIRGMKT--LHLRVQQQN 414 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~~~--------------------~~~G~~ls~~~A~---l~lrgL~t--l~~R~e~~~ 414 (466)
+++.. .|+++++++++++++... ....++.+..... .+++.+.. ++...++..
T Consensus 199 ~~~~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 276 (392)
T 2z9v_A 199 GAPPG--LTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHA 276 (392)
T ss_dssp CCCSC--CEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCCCc--eeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76532 389999999888876421 0111223333222 22222222 455667778
Q ss_pred HHHHHHHHHHHcC
Q 012321 415 STALRMAKILEAH 427 (466)
Q Consensus 415 ~na~~La~~L~~~ 427 (466)
++++++.+.|++.
T Consensus 277 ~~~~~l~~~L~~~ 289 (392)
T 2z9v_A 277 LTAKAMRAGVTAM 289 (392)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 8888898888875
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=196.06 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=160.2
Q ss_pred hhHHHHHHHHHhhhCCC----------cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 210 PTTVVVEEKMSALEGAE----------STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e----------~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
+.++++.+.+++.+|.+ +.+++++| ++|+.+++.+++++||+|++++|+|.+.... +...|.++.
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~ 157 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS----LHPLGCNII 157 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HGGGTCEEE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEE
Confidence 45667777777766742 35555555 5999999999999999999999999986543 445677777
Q ss_pred EeCC----CCHHHHHHhccC-----------CCceEEEE-eCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCC
Q 012321 279 VIDP----ADMEGLEAALNN-----------NNVSLFFT-ESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPL 339 (466)
Q Consensus 279 ~vd~----~D~e~Le~ai~~-----------~~tklV~l-esPsNPtG~v~dl~---~I~ela~~~gillIvD~t~a~~~ 339 (466)
.++. .|+++|+++++. .++++|++ ++|+||||.+++.+ +|.++|+++|+++|+|++|....
T Consensus 158 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 158 NVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp EECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred EeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 6653 478999998862 24889877 68999999999755 99999999999999999986321
Q ss_pred c-----cchhc---cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------
Q 012321 340 N-----QKALS---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------ 405 (466)
Q Consensus 340 ~-----~~pl~---~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t------ 405 (466)
. ..... .+.++++.|+||+++ +| .+.|+++++++++++++........+.+++.++.+...++.
T Consensus 238 ~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~ 315 (425)
T 2r2n_A 238 FNKFRVPTFLSMDVDGRVIRADSFSKIIS-SG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGF 315 (425)
T ss_dssp SSSSCCCCTGGGCTTSCEEEEEESTTTTC-ST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCCCCCEEEEccchhhcc-Cc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchH
Confidence 1 11112 245699999999997 65 46799999999999998877665555666655554444433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHc-CCCcEEEeCC
Q 012321 406 ---LHLRVQQQNSTALRMAKILEA-HPKVKRVHYP 436 (466)
Q Consensus 406 ---l~~R~e~~~~na~~La~~L~~-~p~V~~V~~P 436 (466)
+....+++.++++.+.+.|++ .|.+..+..|
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p 350 (425)
T 2r2n_A 316 MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP 350 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC
Confidence 334445667788888888887 4665433333
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=198.45 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=164.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
|+....+..+++++++++++|.+ +.+++++|++|+..++.+++++||+|+++++.|.+.. +...++..|.++..+
T Consensus 61 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v 138 (393)
T 1vjo_A 61 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTI 138 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHH--HHHHHHHcCCceEEE
Confidence 43323467889999999999974 4566677779999999999999999999999998721 223344567777776
Q ss_pred CC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 281 d~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
+. .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ......+.|+++.|
T Consensus 139 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s 218 (393)
T 1vjo_A 139 SKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSC 218 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECC
T ss_pred ecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEc
Confidence 52 6899999999761389999999999999999999999999999999999999884321 12223578999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHH--------------------HHhCCCchHHHHHHHHHhhHH-----HHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLR 409 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--------------------~~~G~~ls~~~A~l~lrgL~t-----l~~R 409 (466)
+||++++++ ..|+++++++++++++... ....++.+....+.+...++. +...
T Consensus 219 ~sK~l~~~~--~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~ 296 (393)
T 1vjo_A 219 SQKGLGCSP--GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANC 296 (393)
T ss_dssp SSSTTCSCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcccccCCC--ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHH
Confidence 999999887 3599999999888774320 001114455444433334433 3456
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 012321 410 VQQQNSTALRMAKILEAH 427 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~ 427 (466)
.++..++++.+.+.|++.
T Consensus 297 ~~~~~~~~~~l~~~L~~~ 314 (393)
T 1vjo_A 297 WQRHQKNVEYLWERLEDI 314 (393)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 677888899999999876
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=200.90 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=154.6
Q ss_pred HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--
Q 012321 212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-- 281 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-- 281 (466)
...|++.+++++ |. ++.+++++|++|+.+++.+++++||+|++.+|.|.+....+ ...|.++..++
T Consensus 97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 172 (447)
T 3b46_A 97 RPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPIN 172 (447)
T ss_dssp CHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeCC
Confidence 345555555554 43 34566666679999999999999999999999999866543 33455554442
Q ss_pred ---------------CCCHHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012321 282 ---------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN--- 340 (466)
Q Consensus 282 ---------------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~--- 340 (466)
..|+++|++++++ ++++|++++|+||||.++ ++++|+++|+++|+++|+|++|.....
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~ 251 (447)
T 3b46_A 173 PPKELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS 251 (447)
T ss_dssp CCGGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred CccccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC
Confidence 2479999999986 499999999999999996 588999999999999999999875322
Q ss_pred ---cchh---ccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------HH
Q 012321 341 ---QKAL---SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LH 407 (466)
Q Consensus 341 ---~~pl---~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t------l~ 407 (466)
...+ ..+.|+++.|+||+++.+|+ +.|++++ ++++++.++........+.++...+.+...++. +.
T Consensus 252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~ 330 (447)
T 3b46_A 252 FTRIATLSPEIGQLTLTVGSAGKSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFE 330 (447)
T ss_dssp CCCGGGSCHHHHTTEEEEEEHHHHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred CcCHHHcCCCCCCcEEEEecCchhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHH
Confidence 1111 34789999999999987774 5799999 999999888766544444444444333333332 44
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 012321 408 LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~ 427 (466)
...+++.++++.+.+.|+++
T Consensus 331 ~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 331 KMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 45566778888888888875
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=196.59 Aligned_cols=223 Identities=16% Similarity=0.127 Sum_probs=166.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC----------CCEEEEcCCCccchHHHHHhhc
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA----------GGHIVTTTDCYRKTRIFIETVL 270 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~p----------GD~VLv~~~~y~~t~~~~~~~l 270 (466)
.+.+..+.++..+++++++++++|.++++++++|++|+..++..+..+ ||+|++..+.|++.........
T Consensus 69 ~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 148 (392)
T 3ruy_A 69 TLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMS 148 (392)
T ss_dssp SCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred cccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhcc
Confidence 344455678999999999999999888999999999999999877654 6899999999976543322211
Q ss_pred cc---------CCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC
Q 012321 271 PK---------MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT 337 (466)
Q Consensus 271 ~~---------~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~ 337 (466)
.. ....+..++..|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 227 (392)
T 3ruy_A 149 SNEEYKRGFGPMLPGIIVIPYGDLEALKAAITP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227 (392)
T ss_dssp SCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCT-TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred CChhhccccCCCCCCCeeeCcccHHHHHHHhcc-CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 11 1123555666799999999986 4999999999999999998 99999999999999999999853
Q ss_pred C-C-----ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHH
Q 012321 338 P-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLR 409 (466)
Q Consensus 338 ~-~-----~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R 409 (466)
. . .........|++ ++||.++| |..++|++++++++++.++..........++..+..+...++.+ +..
T Consensus 228 ~~~~g~~~~~~~~~~~~d~~--~~SK~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 304 (392)
T 3ruy_A 228 LGRTGKVFACDWDNVTPDMY--ILGKALGG-GVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKL 304 (392)
T ss_dssp TTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CCccccchhhhccCCCCCEE--EEchhhhC-ChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 2 1 112223346776 45699887 32457999999988877765444334455676666666666554 345
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 012321 410 VQQQNSTALRMAKILEAH 427 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~~ 427 (466)
.++..++++++.+.|++.
T Consensus 305 ~~~~~~~~~~l~~~L~~~ 322 (392)
T 3ruy_A 305 TERSLQLGEKLVGQLKEI 322 (392)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 667788889999999876
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=199.76 Aligned_cols=170 Identities=10% Similarity=0.090 Sum_probs=139.4
Q ss_pred chhHHHHHHHHHhhhCCCc--EE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC--
Q 012321 209 NPTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~--~v-~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~-- 283 (466)
.+..+++++++++++|.+. .+ +++||++|+..++.+++++||+|+++++.|.+.. +...+...|+++..++..
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 120 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWG 120 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCC
Confidence 5668899999999999743 34 5678889999999999999999999999998732 234455678888777643
Q ss_pred ---CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 284 ---D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|++|++
T Consensus 121 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l 200 (416)
T 3isl_A 121 TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCL 200 (416)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCcccc
Confidence 899999999832489999999999999999999999999999999999999875543 2334567999999999987
Q ss_pred ccccCceEEEEEeChHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRN 382 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~ 382 (466)
.|+. ..|+++.+++++++++.
T Consensus 201 ~g~~--g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 201 SVPS--GMAPITYNERVADVIAA 221 (416)
T ss_dssp CCCS--SEEEEEECHHHHHHHHT
T ss_pred CCCC--CeEEEEECHHHHHHhhc
Confidence 6654 26899999999888763
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=191.08 Aligned_cols=210 Identities=17% Similarity=0.108 Sum_probs=153.9
Q ss_pred HHHHHHhh----hC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 215 VEEKMSAL----EG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 215 Lee~lA~l----~g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
|++.++++ +| .++.+++++|++|+.+++.+++++||+|+++.|.|++....+ ...|.++..++.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~~ 144 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVALEKQA 144 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECEECS
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeecccCC
Confidence 55555554 45 256677777779999999999999999999999999866443 345666665542
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccC--C
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLG--A 348 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~g--a 348 (466)
.|+++|++++++.++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... .....+. .
T Consensus 145 ~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 224 (390)
T 1d2f_A 145 DGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGD 224 (390)
T ss_dssp SSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSS
T ss_pred CccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhh
Confidence 58999999997645999999999999999987 89999999999999999999876432 1112222 2
Q ss_pred -cEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHH-HhC-CCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHH
Q 012321 349 -DLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH-VLG-GALNPNAAYLIIRGM----KTLHLRVQQQNSTALRM 420 (466)
Q Consensus 349 -Divv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~-~~G-~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~L 420 (466)
|. +.|+||+++.+| .+.|+++++ +++++.++.... ... .+.++...+.+...+ +.++.+.++..++++.+
T Consensus 225 ~d~-~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (390)
T 1d2f_A 225 WAL-LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI 302 (390)
T ss_dssp EEE-EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 77 999999998666 457888874 788888877665 333 244555444433333 34555666778888899
Q ss_pred HHHHHc-CCCc
Q 012321 421 AKILEA-HPKV 430 (466)
Q Consensus 421 a~~L~~-~p~V 430 (466)
.+.|++ +|.+
T Consensus 303 ~~~L~~~~~~~ 313 (390)
T 1d2f_A 303 ADKMNAAFPEL 313 (390)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHhhCCCC
Confidence 999988 6654
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=197.69 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---
Q 012321 210 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~--- 283 (466)
+..+++++++++++|.+ + .++++||++|+..++.+++++||+|+++++.|.+.. +...+...|+++..++..
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 123 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE 123 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence 55789999999999873 3 345567889999999999999999999999997732 223455668887777543
Q ss_pred --CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccccccc
Q 012321 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 284 --D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~lg 360 (466)
|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|++|+++
T Consensus 124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~ 203 (411)
T 3nnk_A 124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG 203 (411)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence 899999999753499999999999999999999999999999999999999865433 33345579999999999876
Q ss_pred cccCceEEEEEeChHHHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIRNL 383 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~~~ 383 (466)
++. ..|+++.+++++++++..
T Consensus 204 ~~~--g~g~~~~~~~~~~~~~~~ 224 (411)
T 3nnk_A 204 GPS--GTSPITLSARMEEAIRRR 224 (411)
T ss_dssp CCS--SEEEEEECHHHHHHHHTT
T ss_pred CCC--ceEEEEECHHHHHHHhhc
Confidence 654 268999999998887754
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=191.47 Aligned_cols=211 Identities=15% Similarity=0.177 Sum_probs=159.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e-~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++....|++++++++|.+ +.+++++|+ +++.+++..+ +||+|+++.|+|.+... .++..|+++..++
T Consensus 45 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~ 118 (337)
T 3p1t_A 45 INRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA----RIAVSGLRHFEIG 118 (337)
T ss_dssp TTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH----HHTTSCCEEEEEC
T ss_pred hccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH----HHHHcCCEEEEec
Confidence 45567788999999999999974 355555555 8888888776 99999999999998553 3456788888776
Q ss_pred C-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---hhccCCcEEEe
Q 012321 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLH 353 (466)
Q Consensus 282 ~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---pl~~gaDivv~ 353 (466)
. .|+++|+++ . ++++|++++|+||||.+.|+++|.++|+++++ +|+|++|....... ....+.++++.
T Consensus 119 ~~~~~~~d~~~l~~~--~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~ 194 (337)
T 3p1t_A 119 LTDDLLLDPNDLAQV--S-RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFR 194 (337)
T ss_dssp BCTTSSBCHHHHTTC--C-TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEE
T ss_pred CCCCCCCCHHHHHhh--c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEe
Confidence 3 378888876 2 38999999999999999999999999999996 66699987432211 11235679999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY---LIIRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~---l~lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
|+||+++.+| .+.|++++++++++.++.....++ .+..... .+++..+.+..+++++.++++.+.+.|+++
T Consensus 195 S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 268 (337)
T 3p1t_A 195 SFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFCN--VGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL 268 (337)
T ss_dssp ESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eCchhccCcc-hheEEEEeCHHHHHHHHhhcCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999998666 357899999999998876544333 2333322 233334456677788888899999999886
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=191.22 Aligned_cols=212 Identities=18% Similarity=0.136 Sum_probs=162.2
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
..+...++++++++++|.++.+++++|+.++..++..+. .+||+|+++.+.|++....+ ...|+++..++..|+
T Consensus 89 ~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~ 164 (401)
T 2bwn_A 89 TTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDV 164 (401)
T ss_dssp CBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCH
T ss_pred ChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCH
Confidence 356789999999999999899999999987777766654 58999999999999866443 346888888887789
Q ss_pred HHHHHhccC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------chhc--cCCcEEEe
Q 012321 286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS--LGADLVLH 353 (466)
Q Consensus 286 e~Le~ai~~---~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-------~pl~--~gaDivv~ 353 (466)
++|++.++. .++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... .... .+.|+++.
T Consensus 165 ~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~ 244 (401)
T 2bwn_A 165 AHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNG 244 (401)
T ss_dssp HHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEE
T ss_pred HHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEe
Confidence 999988861 24899999999999999999999999999999999999998844321 0111 13589999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHc
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl-----~~R~e~~~~na~~La~~L~~ 426 (466)
|++|.++++| |++++++++++.++.... .+....++..+..+...++.+ ....++..++++.+.+.|++
T Consensus 245 s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (401)
T 2bwn_A 245 TLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA 320 (401)
T ss_dssp ESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999764 899999998888775432 222223344443333333332 45667778888899998887
Q ss_pred C
Q 012321 427 H 427 (466)
Q Consensus 427 ~ 427 (466)
.
T Consensus 321 ~ 321 (401)
T 2bwn_A 321 L 321 (401)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=197.07 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=159.7
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccC-------------CCEEEEcCCCccchHHHHHhhcccC
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~p-------------GD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.+..+++++++++++|.+ +.+++++|++|+..++.++..+ ||+|+++.+.|++....+ ...
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~ 143 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGR----EMM 143 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHH----HHc
Confidence 455678899999999874 4577888889999999998776 999999999999866443 345
Q ss_pred CcEEEEeCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--------
Q 012321 274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------- 340 (466)
Q Consensus 274 gi~v~~vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-------- 340 (466)
|+++..++.. |+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+..
T Consensus 144 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 144 DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence 7888887653 899999999872389999999999999999999999999999999999999874321
Q ss_pred -------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHh---------CC--CchHHHHHHHHH-
Q 012321 341 -------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL---------GG--ALNPNAAYLIIR- 401 (466)
Q Consensus 341 -------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~---------G~--~ls~~~A~l~lr- 401 (466)
..... ++|+++.|++|+++++.. +|++++.++.+++.++.....+ +. ..+....+.+++
T Consensus 224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 301 (397)
T 3f9t_A 224 KKGVNYKFDFSL-GVDSITIDPHKMGHCPIP-SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY 301 (397)
T ss_dssp CTTCCCCCSGGG-TCSEEECCTTTTTCCCSS-CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred cccccccccccc-cCCeEEEccccccCCCCC-ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence 11122 789999999999976652 3444445555555443211111 11 123344444443
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 402 -GMKTLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 402 -gL~tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
....+..++++..++++++.+.|+++ ++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 331 (397)
T 3f9t_A 302 LGREGQRKIVNECMENTLYLYKKLKEN-NFK 331 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 34456677888889999999999987 443
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=194.20 Aligned_cols=212 Identities=14% Similarity=0.163 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~------ 282 (466)
+..+++++++++++|.++.+++++|++|+..++.++ +++||+|+++.+.|.+....+ ...|.++.+++.
T Consensus 42 ~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~ 117 (418)
T 2c81_A 42 SMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAV----LNVNALPVFVDVEADTYC 117 (418)
T ss_dssp CHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCS
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHH----HHcCCEEEEEecCCCCCC
Confidence 448999999999999989999999999999999999 899999999999999876443 356778777753
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--cchhccCCcEEEecc--ccc
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSA--TKF 358 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~--~~pl~~gaDivv~S~--sK~ 358 (466)
.|+++|+++++++ +++|++ +||+|.+.|+++|.++|+++|+++|+|++|+.+.. ..+...-.|+++.|+ +|+
T Consensus 118 ~d~~~l~~~i~~~-~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~ 193 (418)
T 2c81_A 118 IDPQLIKSAITDK-TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKV 193 (418)
T ss_dssp BCHHHHGGGCCTT-EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred cCHHHHHHhhCCC-CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcc
Confidence 2799999999874 999986 56899999999999999999999999999987642 122222247888888 999
Q ss_pred cccccCceEEEEEe-ChHHHHHHHHHHHHh--------------C------------CCchHHHHHHHHHhhHHHHHHHH
Q 012321 359 IGGHNDVLAGSISG-SGKLVTQIRNLHHVL--------------G------------GALNPNAAYLIIRGMKTLHLRVQ 411 (466)
Q Consensus 359 lgG~gdv~gG~vvg-~~eli~~l~~~~~~~--------------G------------~~ls~~~A~l~lrgL~tl~~R~e 411 (466)
+++ | .+|++++ +++++++++...... . ..+.++.+.+.+..++.++.+++
T Consensus 194 ~~~-g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~ 270 (418)
T 2c81_A 194 LTA-G--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNA 270 (418)
T ss_dssp SCS-S--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHH
T ss_pred cCC-C--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 988 5 5799998 478888877644321 0 01345556666667777888888
Q ss_pred HHHHHHHHHHHHHHcCCCcEE
Q 012321 412 QQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 412 ~~~~na~~La~~L~~~p~V~~ 432 (466)
+..++++++.+.|++.|+++.
T Consensus 271 ~~~~~~~~l~~~L~~~~g~~~ 291 (418)
T 2c81_A 271 IREKNAMFLNDALSKIDGIKV 291 (418)
T ss_dssp HHHHHHHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHHhccCCCccc
Confidence 888999999999998877643
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=192.57 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=169.2
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~------ 282 (466)
.+...+|++++++++|.++++++++|++|+.+++.++. +||+|+++++.|.+.... +...|+++.+++.
T Consensus 51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~ 125 (424)
T 2po3_A 51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHA----LRWIGLTPVFADIDPDTGN 125 (424)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTSS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCcCC
Confidence 47889999999999999989999999999999998875 789999999999986643 3446788877753
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--chhccCCcEEEeccc--cc
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--KF 358 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~--~pl~~gaDivv~S~s--K~ 358 (466)
.|+++|++++++ ++++|+++ ||+|.+.|+++|.++|+++|+++|+|++|+.+... .++....|+++.|++ |+
T Consensus 126 ~d~~~l~~~i~~-~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~ 201 (424)
T 2po3_A 126 LDPDQVAAAVTP-RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKA 201 (424)
T ss_dssp BCHHHHGGGCCT-TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred cCHHHHHHhhCc-CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCC
Confidence 279999999987 49999984 48999999999999999999999999999854322 222223589999998 87
Q ss_pred cccccCceEEEEEeC-hHHHHHHHHHHHHhC------------CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGS-GKLVTQIRNLHHVLG------------GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 359 lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G------------~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~ 425 (466)
+++ + ++|+++++ ++++++++....... ..+++..+++++..++.++.+.++..++++.+.+.|+
T Consensus 202 l~~-~--~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 278 (424)
T 2po3_A 202 VNA-F--EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLA 278 (424)
T ss_dssp SCC-S--SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccC-C--CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776 3 57999998 788888876554211 1345677777777777788888888889999999998
Q ss_pred cCCCcEE
Q 012321 426 AHPKVKR 432 (466)
Q Consensus 426 ~~p~V~~ 432 (466)
+.|++..
T Consensus 279 ~~~g~~~ 285 (424)
T 2po3_A 279 DLPGVLV 285 (424)
T ss_dssp SCTTEEE
T ss_pred cCCCccc
Confidence 8877643
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=194.84 Aligned_cols=220 Identities=15% Similarity=0.148 Sum_probs=161.3
Q ss_pred cCCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
|+.+..+...++++++++++|.+ +.+++++|++|+..++.+++++||+|+++++.|.+.. +...++..|.++..+
T Consensus 46 ~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 123 (393)
T 2huf_A 46 LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVV 123 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEE
Confidence 33334567899999999999974 2445577779999999999999999999999998742 223345568777777
Q ss_pred C-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 281 D-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 281 d-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
+ ..|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|+++..+.. .....++.|+++.|
T Consensus 124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 203 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTG 203 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEEC
Confidence 5 25899999999762389999999999999999999999999999999999999765432 12224578999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHH----H-H---------hC---------CCchHHHHHH---HHHhhH--HH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----H-V---------LG---------GALNPNAAYL---IIRGMK--TL 406 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~----~-~---------~G---------~~ls~~~A~l---~lrgL~--tl 406 (466)
+||+++|+... |+++++++++++++... . . ++ ++.+...... +++.+. .+
T Consensus 204 ~sK~l~g~~G~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 281 (393)
T 2huf_A 204 SQKVLGAPPGI--TPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL 281 (393)
T ss_dssp SSSTTCCCSSC--EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCcccccCCCe--EEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence 99987654322 88889999988876531 0 0 11 1223322221 233322 14
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 012321 407 HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~ 427 (466)
..+.++..++++++.+.|++.
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~ 302 (393)
T 2huf_A 282 PALIARHEDCAKRLYRGLQDA 302 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 556777888899999999875
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=196.01 Aligned_cols=209 Identities=15% Similarity=0.190 Sum_probs=157.6
Q ss_pred HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 212 ~~~Lee~lA~l~g--------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
...+++.++++++ .++.+++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++..
T Consensus 81 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~ 156 (409)
T 2gb3_A 81 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRR 156 (409)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECC
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeccC
Confidence 4567777776653 156777777789999999999999999999999999865433 3457777666543
Q ss_pred -----C-HHHHHHhccCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc----cchhc--cCC
Q 012321 284 -----D-MEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LGA 348 (466)
Q Consensus 284 -----D-~e~Le~ai~~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~----~~pl~--~ga 348 (466)
+ +++|++++++ ++++|++++|+||||.+. ++++|.++|+++|+++|+|++|+.... ...+. .+.
T Consensus 157 ~~~~~~~~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 235 (409)
T 2gb3_A 157 MEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK 235 (409)
T ss_dssp GGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred CCCCCccHHHHHHhhCc-CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCC
Confidence 2 6888888877 499999999999999987 489999999999999999999876432 11122 357
Q ss_pred cEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G~~ls~~~A~l~lrgL----~tl~~R~e~~~~na~~La~~ 423 (466)
|+++.|++|+++.+| .+.|++++++ ++++.++....... ..++...+.+...+ +.++...++..++++.+.+.
T Consensus 236 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 313 (409)
T 2gb3_A 236 VVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKK 313 (409)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998666 4579999988 89998887766554 45555444443333 33555566777888889999
Q ss_pred HHcC
Q 012321 424 LEAH 427 (466)
Q Consensus 424 L~~~ 427 (466)
|+++
T Consensus 314 L~~~ 317 (409)
T 2gb3_A 314 LEEH 317 (409)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9876
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=194.66 Aligned_cols=210 Identities=13% Similarity=0.083 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC
Q 012321 210 PTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~----e~~v~~~SG~aAi~~al~all~p--GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~ 283 (466)
+.++++.+.+++.+|. ++.+++++|++++.+++.+++++ ||+|+++.|+|.+.... +...|.++..++..
T Consensus 63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 138 (376)
T 3ezs_A 63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGA----AKFIKAKSLLMPLT 138 (376)
T ss_dssp HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHH----HHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHH----HHHcCCEEEEcccC
Confidence 3444444445444463 56777788889999999999999 99999999999986543 34567777776543
Q ss_pred CHH----HHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh--------
Q 012321 284 DME----GLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-------- 344 (466)
Q Consensus 284 D~e----~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl-------- 344 (466)
+.+ ++++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... ...
T Consensus 139 ~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 217 (376)
T 3ezs_A 139 KENDFTPSLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGN 217 (376)
T ss_dssp GGGTSCCCCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTC
T ss_pred CCCCcchhHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccc
Confidence 211 56666665 3899999999999999987 667888899999999999998763321 111
Q ss_pred -ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 012321 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM 420 (466)
Q Consensus 345 -~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~L 420 (466)
..+.++++.|+||+++.+| .+.|++++++++++.++......+.+.++..++.+...+ +.+..+.+++.++.+.+
T Consensus 218 ~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 296 (376)
T 3ezs_A 218 EAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLA 296 (376)
T ss_dssp TTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred cccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3567899999999997666 457899999999999988776655566666555444333 34566667777888888
Q ss_pred HHHHH
Q 012321 421 AKILE 425 (466)
Q Consensus 421 a~~L~ 425 (466)
.+.|+
T Consensus 297 ~~~l~ 301 (376)
T 3ezs_A 297 RKIFK 301 (376)
T ss_dssp HHHST
T ss_pred HHHhc
Confidence 88886
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=193.61 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=170.5
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
..+...++++.+++++|.++++++++|++|+.+++.++ +++||+|+++.++|+++...+ ...|+++..++.
T Consensus 37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI----VLLGANPVMVDVDRDT 112 (393)
T ss_dssp SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHH----HHCCCEEEEEeccCCc
Confidence 45889999999999999999999999999999999999 899999999999999866433 456888877752
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC-CcEEEeccc--c
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHSAT--K 357 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g-aDivv~S~s--K 357 (466)
.|+++|++++++ ++++|+++ ||+|.+.|+++|.++|+++|+++|+|++|+.+.......++ .|+++.|++ |
T Consensus 113 ~~~d~~~l~~~l~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 113 LMVTPEHIEAAITP-QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp CCBCHHHHHHHCCT-TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred CCCCHHHHHHhcCC-CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence 479999999987 49999874 57999999999999999999999999999865432222345 899999999 9
Q ss_pred ccccccCceEEEEEeC-hHHHHHHHHHHHHh----------------------C--CCchHHHHHHHHHhhHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------------------G--GALNPNAAYLIIRGMKTLHLRVQQ 412 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~----------------------G--~~ls~~~A~l~lrgL~tl~~R~e~ 412 (466)
++++. ++|+++++ ++++++++...... | ..++++.+.+++..++.++.+.++
T Consensus 189 ~l~~~---~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~ 265 (393)
T 1mdo_A 189 NITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR 265 (393)
T ss_dssp SSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccc---cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98763 47898886 78888877643210 1 124667777666777778888888
Q ss_pred HHHHHHHHHHHHHcCC
Q 012321 413 QNSTALRMAKILEAHP 428 (466)
Q Consensus 413 ~~~na~~La~~L~~~p 428 (466)
..++++.+.+.|++.+
T Consensus 266 ~~~~~~~l~~~L~~~~ 281 (393)
T 1mdo_A 266 RAAIAAQYHQAMADLP 281 (393)
T ss_dssp HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8889999999999876
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-21 Score=193.28 Aligned_cols=213 Identities=15% Similarity=0.134 Sum_probs=158.6
Q ss_pred CchhHHHHHHHHHhh------hCC-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 208 GNPTTVVVEEKMSAL------EGA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l------~g~-e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
+++...++++.++++ .+. ++.+++++| ++++.+++.+++++||+|+++++.|++.... +...|.++..
T Consensus 67 ~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~~ 142 (369)
T 3cq5_A 67 PERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPIL----AKGTHTEFIA 142 (369)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHH----HHHTTCEEEE
T ss_pred CCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHH----HHHcCCEEEE
Confidence 333335788888887 343 344555555 5999999999999999999999999986543 3445777666
Q ss_pred eC-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchh----ccC-C
Q 012321 280 ID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL----SLG-A 348 (466)
Q Consensus 280 vd-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl----~~g-a 348 (466)
++ ..|++++++++++.++++|++++|+||||.+.|++++.++++.+++++|+|++|+.+.. .... ..+ .
T Consensus 143 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 222 (369)
T 3cq5_A 143 VSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTK 222 (369)
T ss_dssp EECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTT
T ss_pred ecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCC
Confidence 64 34799999998762389999999999999999999999999999999999999875432 1112 234 6
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~ 425 (466)
++++.|+||+++.+| .+.|+++++++++++++.....++ .++..++.+...+ +.+..+.++..++++.+.+.|+
T Consensus 223 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (369)
T 3cq5_A 223 LVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVMLVRLPYH--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLE 299 (369)
T ss_dssp EEEEEESSSTTSCGG-GCCEEEEECTHHHHHHHTTSCTTC--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechHhcCCcc-cceEEEEeCHHHHHHHHHcCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999998666 457999999999888876554443 4555444444333 3466667778888999999998
Q ss_pred cC
Q 012321 426 AH 427 (466)
Q Consensus 426 ~~ 427 (466)
+.
T Consensus 300 ~~ 301 (369)
T 3cq5_A 300 EL 301 (369)
T ss_dssp HH
T ss_pred hC
Confidence 73
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=191.12 Aligned_cols=212 Identities=19% Similarity=0.226 Sum_probs=168.7
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.+...++++.|++++|.++++++++|++|+.+++.++ +++||+|+++.+.|+++...+. ..|+++.+++.
T Consensus 31 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~~~~ 106 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLL----ESGYTPVFAGIKND 106 (375)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH----HTTCEEEECCBCTT
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHH----HCCCEEEEeccCCC
Confidence 6788999999999999998889999999999999999 8999999999999998765433 46888887764
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEeccc--
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT-- 356 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~s-- 356 (466)
.|+++|+++++++ +++|++++| +|.+.|+++|.++|+++|+++|+|++++.+........+ .|+++.|++
T Consensus 107 ~~~d~~~l~~~i~~~-~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~ 182 (375)
T 2fnu_A 107 GNIDELALEKLINER-TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI 182 (375)
T ss_dssp SSBCGGGSGGGCCTT-EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred CCCCHHHHHhhcCcC-ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCC
Confidence 3789999999874 999888766 899999999999999999999999998765432211122 378888888
Q ss_pred cccccccCceEEEEEeC-hHHHHHHHHHHHHh--------------C--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~--------------G--~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~ 419 (466)
|++++ | +||+++.+ ++++++++...... + ..+.++.+.+.+..++.++.++++..+++++
T Consensus 183 K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
T 2fnu_A 183 KPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT 259 (375)
T ss_dssp SSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99976 5 46777654 77888877654211 1 1456676666666677788888999999999
Q ss_pred HHHHHHcCCCcE
Q 012321 420 MAKILEAHPKVK 431 (466)
Q Consensus 420 La~~L~~~p~V~ 431 (466)
+.+.|+++|++.
T Consensus 260 l~~~L~~~~~~~ 271 (375)
T 2fnu_A 260 YDRIFKDNPYFT 271 (375)
T ss_dssp HHHHHTTCSSEE
T ss_pred HHHHhhcCCCcc
Confidence 999999988764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=192.22 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=167.6
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC--
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~-- 283 (466)
..++...+|++.+++++|.++++++++|++|+..++.++ +++||+|+++.+.|.++...+ ...|+++.+++..
T Consensus 53 ~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 53 SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSV----TYCGATPVLVDNDPR 128 (391)
T ss_dssp SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTT
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHH----HHCCCEEEEEecCcc
Confidence 346889999999999999999999999999999999999 899999999999999876443 3468888777643
Q ss_pred ----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEeccc-
Q 012321 284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT- 356 (466)
Q Consensus 284 ----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~s- 356 (466)
|+++|+++++++ +++|+ |+||||.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|++
T Consensus 129 ~~~~d~~~l~~~~~~~-~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~ 204 (391)
T 3dr4_A 129 TFNLDAAKLEALITPR-TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFG 204 (391)
T ss_dssp TCSBCGGGSGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBT
T ss_pred ccCcCHHHHHHhcCCC-ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCC
Confidence 789999999874 89888 5789999999999999999999999999999876543322222 488888865
Q ss_pred -cccccccCceEEEEEeC-hHHHHHHHHHHHHh--------------CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012321 357 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 357 -K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~--------------G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~L 420 (466)
|++++ + .+|+++.+ ++++++++...... ...+.++.+.+.+..++.++...++..++++++
T Consensus 205 ~K~l~~-g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l 281 (391)
T 3dr4_A 205 NAIITT-G--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWY 281 (391)
T ss_dssp TSSSCC-B--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCcCCc-C--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 3 36777765 55777776554211 123456666666666677777788888899999
Q ss_pred HHHHHcCCCcE
Q 012321 421 AKILEAHPKVK 431 (466)
Q Consensus 421 a~~L~~~p~V~ 431 (466)
.+.|++. ++.
T Consensus 282 ~~~L~~~-g~~ 291 (391)
T 3dr4_A 282 EQKLARL-GNR 291 (391)
T ss_dssp HHHHGGG-TTS
T ss_pred HHHhhcC-Ccc
Confidence 9999887 443
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=194.91 Aligned_cols=210 Identities=10% Similarity=0.045 Sum_probs=159.7
Q ss_pred HHHHHHHHHhhh-----CC--Cc---EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhccc-CCcEEEEe
Q 012321 212 TVVVEEKMSALE-----GA--ES---TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-MGITATVI 280 (466)
Q Consensus 212 ~~~Lee~lA~l~-----g~--e~---~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~-~gi~v~~v 280 (466)
...|++.+++++ +. ++ .+++++|++|+.+++.+++++||+|+++.|.|++... .+.. .|.++..+
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~g~~~~~~ 165 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL----VFNTRNGANLQTY 165 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHTTTTCCEEEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH----HHHHhcCCeEEEE
Confidence 678888888887 54 45 5566666799999999999999999999999998653 3444 67777766
Q ss_pred CC------CCHHHHHHhccCC--CceEEEEeCCCCCCccccc---HHHHHHHHHh-----cCCEEEEeCCCCCCCcc---
Q 012321 281 DP------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 281 d~------~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d---l~~I~ela~~-----~gillIvD~t~a~~~~~--- 341 (466)
+. .|+++|++++++. ++++|++++|+||||.+.+ +++|.++|++ +|+++|+|++|......
T Consensus 166 ~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~ 245 (430)
T 2x5f_A 166 PIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY 245 (430)
T ss_dssp CCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSC
T ss_pred eccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCccc
Confidence 52 4789999988751 4899999999999999998 8899999999 99999999998754221
Q ss_pred -ch----h-c-cCC---cEEEeccccccccccCceEEEEEe---ChHHHHHHHHHHHH----hCCCchHHHHHHHHHhhH
Q 012321 342 -KA----L-S-LGA---DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV----LGGALNPNAAYLIIRGMK 404 (466)
Q Consensus 342 -~p----l-~-~ga---Divv~S~sK~lgG~gdv~gG~vvg---~~eli~~l~~~~~~----~G~~ls~~~A~l~lrgL~ 404 (466)
.+ + . .+. ++++.|+||+++.+|. +.|++++ ++++++.++..... ...+.++..++.+...++
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 324 (430)
T 2x5f_A 246 TQSLFTALTNLHSNAILPIRLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLK 324 (430)
T ss_dssp CSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred chHHHHHHhhccCCcceEEEEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHc
Confidence 11 1 1 345 6889999999987763 5688888 99999988876654 344456666555555554
Q ss_pred ----HHHH---HHHHHHHHHHHHHHHHHc
Q 012321 405 ----TLHL---RVQQQNSTALRMAKILEA 426 (466)
Q Consensus 405 ----tl~~---R~e~~~~na~~La~~L~~ 426 (466)
.++. +.+++.++++.+.+.|++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 353 (430)
T 2x5f_A 325 NNKQFDKEIEQNIQTLKERYEVTKEVVYA 353 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 666777888899999983
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-21 Score=192.36 Aligned_cols=219 Identities=12% Similarity=0.082 Sum_probs=160.8
Q ss_pred CCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHH---hc---cCC-CEEEEcCCCccchHHHHHhhccc----C
Q 012321 206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLA---LV---PAG-GHIVTTTDCYRKTRIFIETVLPK----M 273 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~a---ll---~pG-D~VLv~~~~y~~t~~~~~~~l~~----~ 273 (466)
+|.++...+|+++|++++|. ++.+++++|++|+.+++.. +. ++| |+|++.++.|++........... .
T Consensus 66 ~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~ 145 (375)
T 2eh6_A 66 LYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHK 145 (375)
T ss_dssp TBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred ccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccC
Confidence 34567788999999999998 7788888888999988865 34 678 99999999998754333222111 1
Q ss_pred Cc-----EEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-Ccc--
Q 012321 274 GI-----TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQ-- 341 (466)
Q Consensus 274 gi-----~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~-~~~-- 341 (466)
+. .+..++..|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.. ...
T Consensus 146 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 224 (375)
T 2eh6_A 146 GFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF 224 (375)
T ss_dssp TTCSCCSSEEEECTTCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCceeCCCchHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Confidence 22 2556666799999999986 4999999999999999988 999999999999999999998832 111
Q ss_pred -chhccC--CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012321 342 -KALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418 (466)
Q Consensus 342 -~pl~~g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~ 418 (466)
.....| .|++ |+||++++ + .+.|+++++++++++++..........++..+..+...++.+....++..++++
T Consensus 225 ~~~~~~~~~~d~~--s~SK~~~~-g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (375)
T 2eh6_A 225 YAYQHFNLKPDVI--ALAKGLGG-G-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGN 300 (375)
T ss_dssp SGGGGGTCCCSEE--EECGGGGT-T-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCCCEE--EEcccccC-C-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112335 7877 56699996 3 356888888888776654211122234566666666666666556677788899
Q ss_pred HHHHHHHcCCC
Q 012321 419 RMAKILEAHPK 429 (466)
Q Consensus 419 ~La~~L~~~p~ 429 (466)
.+.+.|++.+.
T Consensus 301 ~l~~~L~~~~~ 311 (375)
T 2eh6_A 301 YFKEKLKELGK 311 (375)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhc
Confidence 99999988653
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-21 Score=192.70 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=160.1
Q ss_pred cCCCCchhHHHHHHHHHhhhCCC-c--EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGAE-S--TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~e-~--~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
|+.+..+...++++++++++|.+ + .+++++|++|+..++.+++++||+|+++++.|.+.. ....++..|+++..+
T Consensus 45 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 45 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTI 122 (396)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEe
Confidence 44333456889999999999974 3 445566779999999999999999999999999853 112345568887777
Q ss_pred C-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 281 D-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 281 d-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
+ ..|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....+++|+++.|
T Consensus 123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s 202 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG 202 (396)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEc
Confidence 5 35899999999762389999999999999999999999999999999999999874322 12224568999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHH--------------HHHhC---------CCchHHHHHH---HHHhh--HHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL--------------HHVLG---------GALNPNAAYL---IIRGM--KTL 406 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~--------------~~~~G---------~~ls~~~A~l---~lrgL--~tl 406 (466)
++|+++++.. .|+++.++++++.++.. ...++ .+.+...... +++.+ +.+
T Consensus 203 ~~K~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 280 (396)
T 2ch1_A 203 AQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGL 280 (396)
T ss_dssp CC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCccccCCCC--eEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhH
Confidence 9998887653 38999999888776531 01111 1223322222 23332 224
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 012321 407 HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~ 427 (466)
+.+.++..++++.+.+.|+++
T Consensus 281 ~~~~~~~~~~~~~l~~~L~~~ 301 (396)
T 2ch1_A 281 ENQIKRRIECAQILYEGLGKM 301 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 556777888888999988865
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=195.52 Aligned_cols=216 Identities=13% Similarity=0.140 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C
Q 012321 210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----~ 283 (466)
+....|++.+++++|. ++.+++++|++|+.+++.+++++||+|++..|.|++....+ ...|.++..++. .
T Consensus 74 ~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 74 EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAF----RLQGPRFLTVPAGEEGP 149 (397)
T ss_dssp TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH----HHcCCEEEecCcCCCCC
Confidence 3467899999999985 34555555569999999999999999999999999866443 345766665542 4
Q ss_pred CHHHHHHhccCCCceEEE-EeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCc-----cchhcc------CC
Q 012321 284 DMEGLEAALNNNNVSLFF-TESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL------GA 348 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~-lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~------ga 348 (466)
|+++|++++++.++++|+ +++|+||||.+.+. ++|.++|+++|+++|+|++|..... .....+ +.
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG 229 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence 899999999753488884 79999999999875 4899999999999999999876432 111222 34
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----~tl~~R~e~~~~na~~La~~ 423 (466)
++++.|+||+++ +| .+.|++++++++++.++..........++..++.+...+ +.+..+.+++.++++.+.+.
T Consensus 230 ~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (397)
T 2zyj_A 230 VIYLGSFSKVLS-PG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA 307 (397)
T ss_dssp EEEEEESTTTTC-GG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccc-cc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999 55 467999999999998887655433333555444444433 33555566677888889999
Q ss_pred HHc-CC-CcE
Q 012321 424 LEA-HP-KVK 431 (466)
Q Consensus 424 L~~-~p-~V~ 431 (466)
|++ .| .+.
T Consensus 308 L~~~~~~g~~ 317 (397)
T 2zyj_A 308 LDREVPKEVR 317 (397)
T ss_dssp HHHHSCTTSE
T ss_pred HHHHCCCCeE
Confidence 987 46 354
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-21 Score=195.71 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=156.7
Q ss_pred CCCCchh-HHHHHHHHHhhhC--------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC
Q 012321 205 GRYGNPT-TVVVEEKMSALEG--------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 205 ~R~~~p~-~~~Lee~lA~l~g--------~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.+|+++. ..+|++.++++++ . ++.+++++|++++.+++.+++++||+|++++|+|++.... .....
T Consensus 77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~---~~~~~ 153 (428)
T 1iay_A 77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD---LRWRT 153 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH---TTTTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH---HHHhc
Confidence 4455554 6788888888775 2 3444444445999999999999999999999999985431 23356
Q ss_pred CcEEEEeCC-------CCHHHHHHhccC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012321 274 GITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP 338 (466)
Q Consensus 274 gi~v~~vd~-------~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~ 338 (466)
|+++..++. .|+++|++++++ .++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...
T Consensus 154 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 888777753 378999988863 24899999999999999999 899999999999999999998753
Q ss_pred Ccc-----c--hhccC-------Cc--EEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 012321 339 LNQ-----K--ALSLG-------AD--LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR 401 (466)
Q Consensus 339 ~~~-----~--pl~~g-------aD--ivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lr 401 (466)
... . .+..+ .| +++.|+||+++.+| .+.|++++ ++++++.++.....++ .++..+..+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~ 310 (428)
T 1iay_A 234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFGL--VSTQTQYFLAA 310 (428)
T ss_dssp CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTTSC--CCHHHHHHHHH
T ss_pred ccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHHHHhccc--CCHHHHHHHHH
Confidence 211 1 11112 57 89999999998766 45688887 6888888876554332 33443333333
Q ss_pred hhH-------HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 402 GMK-------TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 402 gL~-------tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.++ .+....+++.++++.+.+.|+++
T Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (428)
T 1iay_A 311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV 343 (428)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 23445566778888899999876
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=192.44 Aligned_cols=215 Identities=14% Similarity=0.160 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
.+...++++++++++|.+ ..+++++|++|+..++.+++++||+|+++.+.|.+.. +...+...|.++..++
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~ 132 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPG 132 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCC
Confidence 466789999999999874 2456677789999999999999999999988875432 2234455677777664
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~l 359 (466)
..|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. .......++|+++.|+||++
T Consensus 133 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~ 212 (393)
T 3kgw_A 133 EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVL 212 (393)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTT
T ss_pred CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccc
Confidence 2589999999986349999999999999999999999999999999999999987442 23333457899999999988
Q ss_pred ccccCceEEEEEeChHHHHHHHHHHH--------------Hh---------CCCchHHHHHHHHHhhH---H--HHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRNLHH--------------VL---------GGALNPNAAYLIIRGMK---T--LHLRVQ 411 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~~~~--------------~~---------G~~ls~~~A~l~lrgL~---t--l~~R~e 411 (466)
+|+.. .|+++++++++++++.... .+ ..+.+....+.+...++ . ++.+.+
T Consensus 213 ~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 290 (393)
T 3kgw_A 213 NAPPG--ISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR 290 (393)
T ss_dssp CCCSS--CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCCc--eeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 65542 5899999999888764221 11 12233333222222222 2 466677
Q ss_pred HHHHHHHHHHHHHHcC
Q 012321 412 QQNSTALRMAKILEAH 427 (466)
Q Consensus 412 ~~~~na~~La~~L~~~ 427 (466)
+..++++.+.+.|+++
T Consensus 291 ~~~~~~~~l~~~L~~~ 306 (393)
T 3kgw_A 291 RHREATAHLHKHLQEM 306 (393)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8888999999999886
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-20 Score=194.21 Aligned_cols=215 Identities=16% Similarity=0.133 Sum_probs=157.5
Q ss_pred HHHHHHHHHhhh----CC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 212 TVVVEEKMSALE----GA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~----g~---e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
...|++++++++ |. ++.+++++|++|+..++.+++++||+|+++.|.|.+....+ ...|.++..++.
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~ 195 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAF----NFYEPQYIQIPLDD 195 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEET
T ss_pred cHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHH----HHcCCEEEEeccCC
Confidence 456777777766 75 45556666679999999999999999999999999866443 345776666543
Q ss_pred --CCHHHHHHhcc----C-CCceEEE-EeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhc-
Q 012321 283 --ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS- 345 (466)
Q Consensus 283 --~D~e~Le~ai~----~-~~tklV~-lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~- 345 (466)
.|+++|+++++ + .++++|+ +++|+||||.+++ +++|.++|+++|+++|+|++|...... ....
T Consensus 196 ~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~ 275 (448)
T 3aow_A 196 EGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKAL 275 (448)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGG
T ss_pred CCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhc
Confidence 48999999987 5 2489985 6899999999986 568999999999999999998764321 1112
Q ss_pred --cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHH
Q 012321 346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTA 417 (466)
Q Consensus 346 --~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na 417 (466)
.+.++++.|+||+++ +| .+.|++++++++++++.........+.+++.++.+...|+ .+....+++.+++
T Consensus 276 ~~~~~vi~~~S~SK~~~-~G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~ 353 (448)
T 3aow_A 276 DNEGRVIYLGTFSKILA-PG-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRR 353 (448)
T ss_dssp CTTSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEccchhhcc-cc-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 246799999999998 55 4689999999999998876654433335554444433333 3445556667888
Q ss_pred HHHHHHHHc-CC-CcEE
Q 012321 418 LRMAKILEA-HP-KVKR 432 (466)
Q Consensus 418 ~~La~~L~~-~p-~V~~ 432 (466)
+.+.+.|++ .| .+..
T Consensus 354 ~~l~~~L~~~~~~g~~~ 370 (448)
T 3aow_A 354 DAMLEALEEFMPEGVKW 370 (448)
T ss_dssp HHHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHhCCCCeEE
Confidence 889999987 46 4543
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=190.78 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=155.0
Q ss_pred hHHHHHHHHHhhhC--------------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 211 TTVVVEEKMSALEG--------------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 211 ~~~~Lee~lA~l~g--------------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
....|++.++++++ .++.+++++|++|+.+++.+++++||+|+++.|.|++.... +...|++
T Consensus 76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~ 151 (416)
T 1bw0_A 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETV----CKAYGIG 151 (416)
T ss_dssp CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCE
T ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHH----HHHcCcE
Confidence 45677778877776 35666666677999999999999999999999999986543 3445766
Q ss_pred EEEeCC-------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012321 277 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----- 341 (466)
Q Consensus 277 v~~vd~-------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----- 341 (466)
+..++. .|+++|+++++++ +++|++++|+||||.+.+ +++|.++|+++|+++|+|++|......
T Consensus 152 ~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 152 MHFYNCRPENDWEADLDEIRRLKDDK-TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN 230 (416)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred EEEeecCcccCCCCCHHHHHHHhccC-CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence 665531 4799999999874 899999999999999998 899999999999999999998763211
Q ss_pred ---chh-cc---CCcEEEeccccccccccCceEEEEEeCh--HHHHHHH----HHHHHhCCCchHHHHHHHHHhh-----
Q 012321 342 ---KAL-SL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIR----NLHHVLGGALNPNAAYLIIRGM----- 403 (466)
Q Consensus 342 ---~pl-~~---gaDivv~S~sK~lgG~gdv~gG~vvg~~--eli~~l~----~~~~~~G~~ls~~~A~l~lrgL----- 403 (466)
.++ .+ +.++++.|+||+++++| .+.|++++++ ++++.+. ..... ..+.++..++.+...+
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~ 308 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTPQ 308 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSCH
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHhcccH
Confidence 111 11 23588999999998776 3467887654 3444333 32211 1233444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 404 KTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 404 ~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
+.+..+.++..++++.+.+.|+++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 337 (416)
T 1bw0_A 309 EHLDQIVAKIEESAMYLYNHIGECIGLAP 337 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34566777888899999999998877653
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=188.32 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
+...++++++++++|.+ +.+++++|++|+.+++.+++++||+|+++++.|++.. +...+...|.++..++.
T Consensus 34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~ 111 (352)
T 1iug_A 34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT 111 (352)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCC
Confidence 45789999999999975 5566678889999999999999999999999999865 22334556888777653
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
.|+++|++ + ++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+.. ......+.|+++.|+||++
T Consensus 112 ~d~~~l~~---~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 187 (352)
T 1iug_A 112 PRPEDVAK---E-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGL 187 (352)
T ss_dssp CCTTTSCC---S-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTT
T ss_pred CCHHHHhc---c-CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccc
Confidence 35666655 3 489999999999999999999999999999 999999999874432 1222357899999999977
Q ss_pred ccccCceEEEEEeChHHHHH---------HHHHH-----HHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQ---------IRNLH-----HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA 421 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~---------l~~~~-----~~~G~~ls~~~A~l~lrgL~----tl~~R~e~~~~na~~La 421 (466)
.++.+ .|+++.+++++++ ++... .....+.+......+...++ .++.+.++..++++.+.
T Consensus 188 ~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 265 (352)
T 1iug_A 188 MCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLY 265 (352)
T ss_dssp CCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCc--eeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76642 4888888887755 33111 11122333333222222222 25566777888999999
Q ss_pred HHHHcCCCc
Q 012321 422 KILEAHPKV 430 (466)
Q Consensus 422 ~~L~~~p~V 430 (466)
+.|++. ++
T Consensus 266 ~~L~~~-g~ 273 (352)
T 1iug_A 266 GVGEEG-GL 273 (352)
T ss_dssp HHHHHT-TC
T ss_pred HHHHHC-CC
Confidence 999886 44
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=189.32 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 210 PTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g----~e~~v~~~SG~aAi~~al~all~pG-D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
..++++.+.+.+.+| .++.+++++|++|+..++.+++++| |+|+++.|.|.+....+ ...|+++..++.
T Consensus 80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~ 155 (398)
T 3ele_A 80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFV----NAAGARLVEVPADT 155 (398)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCT
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEecCC
Confidence 445555555555555 2567777777899999999999999 99999999999865433 456788777753
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHh------cCCEEEEeCCCCCCCcc------ch
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ------KA 343 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~------~gillIvD~t~a~~~~~------~p 343 (466)
.|+++|+++++++ +++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|...... ..
T Consensus 156 ~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 234 (398)
T 3ele_A 156 EHFQIDFDALEERINAH-TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT 234 (398)
T ss_dssp TTSSCCHHHHHHTCCTT-EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG
T ss_pred cCCcCCHHHHHHHhCcC-CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChH
Confidence 3899999999874 999999999999999998 6777789998 99999999998753321 11
Q ss_pred hccCCcEEEeccccccccccCceEEEEEeChHH------HHHHHHHHHHhC-CCchHHHHHHHHHhhHHHHHHHHHHHHH
Q 012321 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------VTQIRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQNST 416 (466)
Q Consensus 344 l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el------i~~l~~~~~~~G-~~ls~~~A~l~lrgL~tl~~R~e~~~~n 416 (466)
...+.++++.|+||+++.+| .+.|++++++++ .+.+.......+ ...+...++.+...++... ..+++.++
T Consensus 235 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~ 312 (398)
T 3ele_A 235 KYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKEN 312 (398)
T ss_dssp GTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHHH
T ss_pred hhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 12356799999999998666 457888888763 334444433332 3344555555444444322 34566778
Q ss_pred HHHHHHHHHcC
Q 012321 417 ALRMAKILEAH 427 (466)
Q Consensus 417 a~~La~~L~~~ 427 (466)
++.+.+.|+++
T Consensus 313 ~~~l~~~L~~~ 323 (398)
T 3ele_A 313 RDLLYEGLTRI 323 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888888764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-20 Score=182.86 Aligned_cols=219 Identities=17% Similarity=0.159 Sum_probs=159.3
Q ss_pred CchhHHHHHHHHHhhhCCCc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC--CcEEEEeCC--
Q 012321 208 GNPTTVVVEEKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDP-- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~--gi~v~~vd~-- 282 (466)
..+..+++++++++++|.+. .+++++|++|+.+++.+++++||+|+++.+.|+.++.. ..+... |.++..++.
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~ 118 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPA 118 (356)
T ss_dssp CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGG
T ss_pred cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCC
Confidence 46888999999999999655 57778999999999999999999999999998775432 002333 777777764
Q ss_pred --CCHHHHHH-hccCC------CceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCC------Cccchh
Q 012321 283 --ADMEGLEA-ALNNN------NVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATP------LNQKAL 344 (466)
Q Consensus 283 --~D~e~Le~-ai~~~------~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~------~~~~pl 344 (466)
.|+++|++ ++++. ++++|++++|+| ||.++ ++++|.++|++||+++|+|++|..+ ......
T Consensus 119 ~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 197 (356)
T 1v72_A 119 AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM 197 (356)
T ss_dssp GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT
T ss_pred CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh
Confidence 38999999 88751 489999999987 99954 5889999999999999999998532 111111
Q ss_pred --ccCCcEEEeccccccccccCceE-EEEEeChHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhH--HHHHHHHHHHHHH
Q 012321 345 --SLGADLVLHSATKFIGGHNDVLA-GSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMK--TLHLRVQQQNSTA 417 (466)
Q Consensus 345 --~~gaDivv~S~sK~lgG~gdv~g-G~vvg~~eli~~l~~~~~~~G~~l--s~~~A~l~lrgL~--tl~~R~e~~~~na 417 (466)
..+.|+++.|+||+ +++ .| |+++++++++++++......|... ....+..+++.++ ....++++..+++
T Consensus 198 ~~~~~~d~~~~s~sK~-g~~---~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 273 (356)
T 1v72_A 198 TWKAGVDALSFGATKN-GVL---AAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAA 273 (356)
T ss_dssp TGGGTCCEEEECCGGG-TCS---SCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred hhhhcCCEEEEecccC-CCc---CccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23689999999999 443 34 789889999988876654444322 2222222233332 1234566778889
Q ss_pred HHHHHHHHcCCCcEEE
Q 012321 418 LRMAKILEAHPKVKRV 433 (466)
Q Consensus 418 ~~La~~L~~~p~V~~V 433 (466)
+++.+.|+++++++.+
T Consensus 274 ~~l~~~L~~~~g~~~~ 289 (356)
T 1v72_A 274 QRLAQGLEGLGGVEVL 289 (356)
T ss_dssp HHHHHHHTTCTTEEEE
T ss_pred HHHHHHHhhCCCcEEc
Confidence 9999999988877544
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=191.85 Aligned_cols=216 Identities=11% Similarity=0.111 Sum_probs=160.9
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
+.+|+++....|++++++++|. ++.+++++|++|+.+++.++. ||+|+++.|+|.+.... +...|+++..++
T Consensus 44 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~----~~~~g~~~~~v~ 117 (350)
T 3fkd_A 44 IRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDA----CRMYEHEVCFYP 117 (350)
T ss_dssp GGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHH----HHHTTCEEEEEE
T ss_pred HhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHH----HHHcCCeEEEEe
Confidence 4455556668999999999986 356666666799999998887 99999999999986543 445688888887
Q ss_pred C-CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC-CEEEEeCCCCCCCccc-----h-hccCCcEEEe
Q 012321 282 P-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQK-----A-LSLGADLVLH 353 (466)
Q Consensus 282 ~-~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~g-illIvD~t~a~~~~~~-----p-l~~gaDivv~ 353 (466)
. .+.+.+ ...++++|++++|+||||.+.++++|.++++.++ .++|+|++|....... . ...+.++++.
T Consensus 118 ~~~~~~~~----~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~ 193 (350)
T 3fkd_A 118 SNEDIGEA----DFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY 193 (350)
T ss_dssp TTSCGGGS----CCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred cCCccccC----ccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence 6 432322 2235899999999999999999999999998876 7999999987543211 1 1234569999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcCCCc
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t---l~~R~e~~~~na~~La~~L~~~p~V 430 (466)
|+||+++.+| .+.|+++++++++++++.....+ ..++..++.+...++. +..+++++.++++.+.+.|+++|.+
T Consensus 194 S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (350)
T 3fkd_A 194 SFSHAYGIPG-LRIGYIVANKDFMKRVAAFSTPW--AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGV 270 (350)
T ss_dssp ESHHHHSCGG-GCCEEEECCHHHHHHHHTTCCTT--CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTE
T ss_pred cCchhccCcc-hheEeEEeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999998666 45789999999999887765433 4456655555555443 3345666668899999999998876
Q ss_pred EE
Q 012321 431 KR 432 (466)
Q Consensus 431 ~~ 432 (466)
..
T Consensus 271 ~~ 272 (350)
T 3fkd_A 271 EV 272 (350)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=196.97 Aligned_cols=217 Identities=14% Similarity=0.144 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 210 PTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g----~e~~v~~~SG~aAi~~al~all-~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
..++.+.+.+.+..| .++.+++++|++++..++.+++ .+||+|+++.|.|......+ ...|.++..++
T Consensus 138 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~ 213 (500)
T 3tcm_A 138 GLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASI----ALHGGALVPYYLNE 213 (500)
T ss_dssp HHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHH----HHTTCEEEEEECBT
T ss_pred HHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEEeccc
Confidence 344444444444444 3567777777899999999998 89999999999999865443 34576666654
Q ss_pred ----CCCHHHHHHhccCC-----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chh
Q 012321 282 ----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL 344 (466)
Q Consensus 282 ----~~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl 344 (466)
..|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .++
T Consensus 214 ~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~ 293 (500)
T 3tcm_A 214 STGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSF 293 (500)
T ss_dssp TTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCH
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcH
Confidence 45899999998751 4899999999999999986 567777799999999999998764331 111
Q ss_pred -----ccC------CcEEEecccccc-ccccCceEEEEEe---ChHHHHHHHHHHHHhCCCchHHHHHHHHH--------
Q 012321 345 -----SLG------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIR-------- 401 (466)
Q Consensus 345 -----~~g------aDivv~S~sK~l-gG~gdv~gG~vvg---~~eli~~l~~~~~~~G~~ls~~~A~l~lr-------- 401 (466)
.++ ..++++|+||.| |.+| .++||+++ ++++++.+++.... ..+.+....+++..
T Consensus 294 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~ 371 (500)
T 3tcm_A 294 KKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILASLVMNPPKAS 371 (500)
T ss_dssp HHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHhcCcccc
Confidence 111 137789999999 4444 56888887 88999988876643 23334433333222
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 402 ------GMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 402 ------gL~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
..+.+..+.+++.++++.+.+.|+++|++..
T Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~ 408 (500)
T 3tcm_A 372 DESYASYKAEKDGILASLARRAKALEHAFNKLEGITC 408 (500)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 2244566677788899999999999887654
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=191.62 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=164.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHHHHhhc---
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVL--- 270 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~~~~~~l--- 270 (466)
+.+.++.++...++++++++++|.++++++++|++|+.+++..++. +| |+|++.++.|++.........
T Consensus 73 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~ 152 (406)
T 4adb_A 73 HTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP 152 (406)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCG
T ss_pred cccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCc
Confidence 3345667889999999999999999999999999999999988765 66 999999999988643322211
Q ss_pred ------ccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc-----cHHHHHHHHHhcCCEEEEeCCCCCC-
Q 012321 271 ------PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATP- 338 (466)
Q Consensus 271 ------~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~-----dl~~I~ela~~~gillIvD~t~a~~- 338 (466)
...+.++..++..|+++|++++++ ++++|+++ |+||+|.+. ++++|.++|+++|+++|+|++|...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 230 (406)
T 4adb_A 153 AYSQDFAPLPADIRHAAYNDINSASALIDD-STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVG 230 (406)
T ss_dssp GGTGGGCSCCSSEEEECTTCHHHHHTTCST-TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cccccCCCCCCCceEeCCCcHHHHHHHhcC-CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 122245666777899999999986 49999998 999999765 6899999999999999999998632
Q ss_pred Cc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHH
Q 012321 339 LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQ 411 (466)
Q Consensus 339 ~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R~e 411 (466)
.. ........|++ ++||.++ +| .++|++++++++++.++..........++..+..+...++.+ +...+
T Consensus 231 ~~g~~~~~~~~~~~~d~~--t~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 306 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLL--TTAKALG-GG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLN 306 (406)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGG-TT-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHH
T ss_pred ccchhHHHHhcCCCCCEE--Eechhhc-CC-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 11 12233446777 5799999 44 468999999999887765443334455666666666666554 45566
Q ss_pred HHHHHHHHHHHHHHcC
Q 012321 412 QQNSTALRMAKILEAH 427 (466)
Q Consensus 412 ~~~~na~~La~~L~~~ 427 (466)
+..++++.+.+.|++.
T Consensus 307 ~~~~~~~~l~~~l~~~ 322 (406)
T 4adb_A 307 GVKQRHDWFVERLNTI 322 (406)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777788887777654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-20 Score=195.50 Aligned_cols=225 Identities=12% Similarity=0.124 Sum_probs=160.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhC-----CCcEEEeCCHHHHHHHHHHHhccCCC----EEEEcCCCccchHHHHHhhccc
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG-----AESTVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPK 272 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g-----~e~~v~~~SG~aAi~~al~all~pGD----~VLv~~~~y~~t~~~~~~~l~~ 272 (466)
|.......+.++++.+.+.+..| .++.++++++++++.+++.+++.+|| +|+++.|.|+.....+ ..
T Consensus 125 Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~----~~ 200 (498)
T 3ihj_A 125 YSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVI----SE 200 (498)
T ss_dssp ---CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHH----HH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHH----HH
Confidence 44443334566777777776664 25677777777999999999998875 9999999999765433 34
Q ss_pred CCcEEEEeCC-------CCHHHHHHhccCC----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012321 273 MGITATVIDP-------ADMEGLEAALNNN----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP 338 (466)
Q Consensus 273 ~gi~v~~vd~-------~D~e~Le~ai~~~----~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~ 338 (466)
.|.++..++. .|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...
T Consensus 201 ~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~ 280 (498)
T 3ihj_A 201 LDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDN 280 (498)
T ss_dssp TTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred cCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcccc
Confidence 5766665542 3899999998752 3899999999999999976 667999999999999999998765
Q ss_pred Cccc-----hh-c----cC------C-cEEEecccccccc-ccCceEEEEE---eChHHHHHHHHHHHHhCCCchHHHHH
Q 012321 339 LNQK-----AL-S----LG------A-DLVLHSATKFIGG-HNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAY 397 (466)
Q Consensus 339 ~~~~-----pl-~----~g------a-Divv~S~sK~lgG-~gdv~gG~vv---g~~eli~~l~~~~~~~G~~ls~~~A~ 397 (466)
.... ++ . .+ . .++++|+||.+.| +| .++||++ +++++++.+....... .+.+....+
T Consensus 281 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~q~ 358 (498)
T 3ihj_A 281 VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLVKLLSVR-LCPPVSGQA 358 (498)
T ss_dssp BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHHHHHHHS-CCCCHHHHH
T ss_pred ccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 4321 11 0 11 1 3788999999954 44 5688887 6889999888776543 333333333
Q ss_pred HHHH--------------hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 398 LIIR--------------GMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 398 l~lr--------------gL~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
.+.. .++.+..+.+++.++++.+.+.|+++|++..
T Consensus 359 a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~ 407 (498)
T 3ihj_A 359 AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHC 407 (498)
T ss_dssp HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence 2222 2344556667888999999999999887653
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=193.07 Aligned_cols=211 Identities=14% Similarity=0.154 Sum_probs=155.1
Q ss_pred hHHHHHHHHHhhh----C---C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALE----G---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g---~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
....|++.+++++ | . ++.+++++|++|+.+++.+++++||+|+++.|.|.+....+ ...|.++..++
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~ 161 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAF----RQYLANFVVVP 161 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH----HHcCCEEEEec
Confidence 3456777777766 7 3 34555555569999999999999999999999999866443 34577666654
Q ss_pred C----CCHHHHHHhccC-------CCceEEE-EeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----c
Q 012321 282 P----ADMEGLEAALNN-------NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----Q 341 (466)
Q Consensus 282 ~----~D~e~Le~ai~~-------~~tklV~-lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-----~ 341 (466)
. .|+++|++++++ .++++|+ +++|+||||.+.+ +++|.++|+++|+++|+|++|..... .
T Consensus 162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 241 (425)
T 1vp4_A 162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD 241 (425)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence 3 489999998865 2489985 7999999999986 57899999999999999999876432 1
Q ss_pred ch--h-ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------HHHHHHH
Q 012321 342 KA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQ 412 (466)
Q Consensus 342 ~p--l-~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t------l~~R~e~ 412 (466)
.. + ..+.++++.|+||+++ +| .+.|++++++++++.++........+.++..++.+...++. +..+.++
T Consensus 242 ~~~~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 319 (425)
T 1vp4_A 242 PIFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIEL 319 (425)
T ss_dssp CHHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred CHHHhCCCCCEEEEeccccccc-cc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 1 1256799999999999 55 46899999999999888766554434456555555444443 3445566
Q ss_pred HHHHHHHHHHHHHcC
Q 012321 413 QNSTALRMAKILEAH 427 (466)
Q Consensus 413 ~~~na~~La~~L~~~ 427 (466)
+.++++.+.+.|+++
T Consensus 320 ~~~~~~~l~~~L~~~ 334 (425)
T 1vp4_A 320 YRRKRTVMLNALEEY 334 (425)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 677888888888874
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=187.04 Aligned_cols=213 Identities=11% Similarity=0.087 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+..+++++++++++|. ++.+++++|++|+.+++.+++++ +.+++..+.|. .. +...++..|+++..++.
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~~--~~~~~~~~g~~~~~v~~~~~~ 118 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-KR--FYEFAGELGREAYKEEAAFGK 118 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-HH--HHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-HH--HHHHHHHhCCCeEEEecCCCC
Confidence 5678899999999986 34666778889999999999987 55555555554 21 12344556888777653
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc-CCEEEEeCCCCCCCccchhccCCcEEEeccccccc
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~-gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lg 360 (466)
.|+++|+ +++ +|++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+........ +|+++.|+||+++
T Consensus 119 ~~d~~~l~--~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~ 194 (362)
T 3ffr_A 119 GFYPADIT--VPA-DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFG 194 (362)
T ss_dssp CCCGGGCC--CCT-TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTC
T ss_pred CCCHHHHh--ccC-CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccC
Confidence 3778887 555 499999999999999999999999999999 999999999876543222222 8999999999999
Q ss_pred cccCceEEEEEeChHHHHHHHHHHHH---------------------hCCCchHHHHHHHHHhhH---H--HHHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIRNLHHV---------------------LGGALNPNAAYLIIRGMK---T--LHLRVQQQN 414 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~~~~~~---------------------~G~~ls~~~A~l~lrgL~---t--l~~R~e~~~ 414 (466)
++.+ +|+++.+++++++++..... ...+.+....+.+...++ . ++.+++++.
T Consensus 195 ~~~G--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 272 (362)
T 3ffr_A 195 LPAG--LGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE 272 (362)
T ss_dssp CCSC--CEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCc--eEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 5442 47888899998888765430 022233333222222222 1 567788888
Q ss_pred HHHHHHHHHHHcCCCcEE
Q 012321 415 STALRMAKILEAHPKVKR 432 (466)
Q Consensus 415 ~na~~La~~L~~~p~V~~ 432 (466)
++++.+.+.|+++|++..
T Consensus 273 ~~~~~l~~~L~~~~g~~~ 290 (362)
T 3ffr_A 273 EKAALINTYIESSKVFSF 290 (362)
T ss_dssp HHHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHccCcee
Confidence 999999999999987754
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=191.74 Aligned_cols=214 Identities=17% Similarity=0.232 Sum_probs=156.3
Q ss_pred hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
....|++.+++++ |. ++.+++++|++|+.+++.+++++||+|+++.|+|.+.... +...|+++..++.
T Consensus 76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~ 151 (407)
T 2zc0_A 76 GIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLA----FEQLGAKIEGVPV 151 (407)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEccc
Confidence 3567777777777 72 4555555567999999999999999999999999986543 3445777666543
Q ss_pred ----CCHHHHHHhcc----C-CCceEE-EEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCCcc-----chh
Q 012321 283 ----ADMEGLEAALN----N-NNVSLF-FTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQ-----KAL 344 (466)
Q Consensus 283 ----~D~e~Le~ai~----~-~~tklV-~lesPsNPtG~v~dl~---~I~ela~~~gillIvD~t~a~~~~~-----~pl 344 (466)
.|+++|+++++ + .++++| ++++|+||||.+.+++ +|.++|+++|+++|+|++|+..... ...
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 231 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK 231 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence 48999999987 5 248987 4789999999999876 9999999999999999998764321 111
Q ss_pred cc---CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-------HHHHHHHHHH
Q 012321 345 SL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-------TLHLRVQQQN 414 (466)
Q Consensus 345 ~~---gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~-------tl~~R~e~~~ 414 (466)
.+ +.++++.|+||+++ +| .++|++++++++++.++......+...++...+.+...++ .+..+.+++.
T Consensus 232 ~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 309 (407)
T 2zc0_A 232 ALDNEGRVIVAGTLSKVLG-TG-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYK 309 (407)
T ss_dssp GGCSSCCEEEEEESTTTTC-TT-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHH
T ss_pred hcCCCCCEEEEcccccccC-CC-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 22 45689999999999 55 4589999999999988876655444445554444433333 2334455667
Q ss_pred HHHHHHHHHHHc-CCCc
Q 012321 415 STALRMAKILEA-HPKV 430 (466)
Q Consensus 415 ~na~~La~~L~~-~p~V 430 (466)
++++.+.+.|++ .|.+
T Consensus 310 ~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 310 EKRDIMLKALENHLPNA 326 (407)
T ss_dssp HHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 788888888876 3543
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=187.34 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
+..+++++++++++|.+ +.++ +++|++|+.+++.+++++||+|++.++.|.+.. .. ..+...|+++..++
T Consensus 52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~-~~-~~~~~~g~~~~~v~~~~~ 129 (376)
T 3f0h_A 52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR-FV-QLCEIHEIPYVALKLEHG 129 (376)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHHTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH-HH-HHHHHcCCceEEEeCCCC
Confidence 66788999999999874 4555 456689999999999999999999998777633 22 33445577666654
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
..|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|++
T Consensus 130 ~~~d~~~l~~~~~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l 208 (376)
T 3f0h_A 130 KKLTKEKLYEYDNQN-FTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVL 208 (376)
T ss_dssp CCCCHHHHHTTTTSC-CCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTT
T ss_pred CCCCHHHHHHhhccC-ceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccc
Confidence 25899999988764 99999999999999999999999999999999999999876433 2333458999999999999
Q ss_pred ccccCceEEEEEeChHHHHHHHHHHH------------H-----hCCCchHHH---HHHHHHhhH---HHHHHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRNLHH------------V-----LGGALNPNA---AYLIIRGMK---TLHLRVQQQNST 416 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~~~~------------~-----~G~~ls~~~---A~l~lrgL~---tl~~R~e~~~~n 416 (466)
+++.+ .|+++.+++++++++.... . .....+... +..+++.++ .++.+.++..++
T Consensus 209 ~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 286 (376)
T 3f0h_A 209 ACPPG--ISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQ 286 (376)
T ss_dssp CCCSS--CEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cCCCc--eEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 95432 4788999998887763210 0 011222211 122222222 245566777788
Q ss_pred HHHHHHHHHcCC
Q 012321 417 ALRMAKILEAHP 428 (466)
Q Consensus 417 a~~La~~L~~~p 428 (466)
++++.+.|++.+
T Consensus 287 ~~~l~~~L~~~~ 298 (376)
T 3f0h_A 287 AADFRAKIKDLP 298 (376)
T ss_dssp HHHHHHHTTTSS
T ss_pred HHHHHHHHHHcC
Confidence 888888888764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-21 Score=189.06 Aligned_cols=213 Identities=16% Similarity=0.174 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~pGD~VLv~~-~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
+...++++++++++|.+ +.+++++|++|+..++.+++++||+|++.. +.|+..+ ...+...|+++..++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~ 113 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE 113 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence 67889999999999842 477788888999999999999999988776 4454432 1233445666666542
Q ss_pred ---CCHHHHHHhccCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-chhccCCcEEEecccc
Q 012321 283 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATK 357 (466)
Q Consensus 283 ---~D~e~Le~ai~~~-~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-~pl~~gaDivv~S~sK 357 (466)
.|+++|+++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... .....+.|+++.|++|
T Consensus 114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K 193 (366)
T 1m32_A 114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK 193 (366)
T ss_dssp TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence 5899999999753 4899999999999999999999999999999999999998754322 2223468999999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHH------------H---HHhC---CCchHHHHHHHHHhhHH------HHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNL------------H---HVLG---GALNPNAAYLIIRGMKT------LHLRVQQQ 413 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~------------~---~~~G---~~ls~~~A~l~lrgL~t------l~~R~e~~ 413 (466)
+++++.+ .|+++++++++++++.. . ...+ .+.+....+.+...++. +....++.
T Consensus 194 ~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 271 (366)
T 1m32_A 194 CIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY 271 (366)
T ss_dssp TTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccCCCc--eEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence 8866542 49999998887665421 0 0001 23444433333333332 34566777
Q ss_pred HHHHHHHHHHHHcC
Q 012321 414 NSTALRMAKILEAH 427 (466)
Q Consensus 414 ~~na~~La~~L~~~ 427 (466)
.++++.+.+.|+++
T Consensus 272 ~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 272 QQNQRSLVAGMRAL 285 (366)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 88899999999875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=183.31 Aligned_cols=214 Identities=14% Similarity=0.157 Sum_probs=153.5
Q ss_pred hHHHHHHHHHhhhCC------CcEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCC-CccchHHHHHhhcccCCcEEEEe
Q 012321 211 TTVVVEEKMSALEGA------ESTVIMASGMSASTVMLLALV---PAGGHIVTTTD-CYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~------e~~v~~~SG~aAi~~al~all---~pGD~VLv~~~-~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
...+++++++++++. ++.+++++|++|+.+++.++. ++||+|++.++ .|+... ...+...|+++..+
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v 115 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVV 115 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEE
Confidence 356678888888775 345666777899999999987 89999988744 454432 12345568888887
Q ss_pred CC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCc-cchhccCCcEE
Q 012321 281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLV 351 (466)
Q Consensus 281 d~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~~-~~pl~~gaDiv 351 (466)
+. .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+.. .....+++|++
T Consensus 116 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~ 195 (385)
T 2bkw_A 116 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA 195 (385)
T ss_dssp CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred ecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEE
Confidence 65 4899999999763489999999999999999999999999999 999999999875432 22234578999
Q ss_pred EeccccccccccCceEEEEEeChHHHH-HHH------------------HHH--HHhC-----CCchHHHHHHHHHhhHH
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVT-QIR------------------NLH--HVLG-----GALNPNAAYLIIRGMKT 405 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~-~l~------------------~~~--~~~G-----~~ls~~~A~l~lrgL~t 405 (466)
+.|+||+++|+.+ .|++++++++++ +++ ... ...+ .+.+....+.+...++.
T Consensus 196 ~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 273 (385)
T 2bkw_A 196 LTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE 273 (385)
T ss_dssp EEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred EecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999998876432 388889988776 542 111 1111 23344333322223332
Q ss_pred -----HHHHHHHHHHHHHHHHHHH-HcCCCc
Q 012321 406 -----LHLRVQQQNSTALRMAKIL-EAHPKV 430 (466)
Q Consensus 406 -----l~~R~e~~~~na~~La~~L-~~~p~V 430 (466)
++.+.++..++++.+.+.| ++. ++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~ 303 (385)
T 2bkw_A 274 ILEEGLHKRWDLHREMSDWFKDSLVNGL-QL 303 (385)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTT-CC
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 4456677888999999999 776 44
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=189.85 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=152.4
Q ss_pred HHHHHHHHHhhhC----------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcc-cCCcEEEEe
Q 012321 212 TVVVEEKMSALEG----------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVI 280 (466)
Q Consensus 212 ~~~Lee~lA~l~g----------~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~-~~gi~v~~v 280 (466)
..+|+++++++++ .++++++++|++|+..++.+++++||+|+++.+.|++.... +. ..|.++..+
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~~~~~ 163 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRD----LKWRTGVEIVPI 163 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----TTTTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHH----HHHhcCCEEEEe
Confidence 5678888888776 46777777888999999999999999999999999986532 33 467777776
Q ss_pred CC-------CCHHHHHHhccC-----CCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012321 281 DP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN----- 340 (466)
Q Consensus 281 d~-------~D~e~Le~ai~~-----~~tklV~lesPsNPtG~v~dl---~~I~ela~~~gillIvD~t~a~~~~----- 340 (466)
+. .|+++|++++++ .++++|++++|+||||.+++. ++|.++|+++|+++|+|++|+....
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 53 489999999865 248999999999999999864 7888889999999999999865221
Q ss_pred cchh----c---------cCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCc-hHHHHHHHHHhhH-
Q 012321 341 QKAL----S---------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGAL-NPNAAYLIIRGMK- 404 (466)
Q Consensus 341 ~~pl----~---------~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~l-s~~~A~l~lrgL~- 404 (466)
.... + .+.++++.|+||.++.+| .+.|++++ ++++++.++......+... .+..+..++...+
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKL 322 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHH
Confidence 1111 1 122388999999998665 45788888 5677777776554433221 1222222233222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 ---TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 ---tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+..+.+++.++++.+.+.|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 348 (435)
T 3piu_A 323 TKNYIAENHKRLKQRQKKLVSGLQKS 348 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23445566778888899999876
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=185.56 Aligned_cols=214 Identities=13% Similarity=0.136 Sum_probs=155.8
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
+...++++++++++|.+ +.+++ ++|++|+..++.++++ |+|+++++.|++. . +...++..|+++..++.
T Consensus 33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~ 108 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-R-VAEMAALHGLDPEVLDFPPG 108 (353)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-H-HHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-H-HHHHHHHcCCceEEEeCCCC
Confidence 44789999999999973 44554 5667999999988876 8999999999875 2 22334556777777653
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
.|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....++.|+++.|++|++
T Consensus 109 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 188 (353)
T 2yrr_A 109 EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCL 188 (353)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTT
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccc
Confidence 5899999999762389999999999999999999999999999999999999864432 2223357899999999987
Q ss_pred ccccCceEEEEEeChHHHHHHHH----------H---H--HHhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIRN----------L---H--HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALR 419 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~~----------~---~--~~~G~~ls~~~A~l~lrgL~t-----l~~R~e~~~~na~~ 419 (466)
+++.+ .|+++++++++++++. . . .....+.+....+.+...++. ++...++..+++++
T Consensus 189 ~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 266 (353)
T 2yrr_A 189 SAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAW 266 (353)
T ss_dssp CCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66442 4899999998876641 0 0 111223344333322222222 45567778888999
Q ss_pred HHHHHHcCCCc
Q 012321 420 MAKILEAHPKV 430 (466)
Q Consensus 420 La~~L~~~p~V 430 (466)
+.+.|++. ++
T Consensus 267 l~~~L~~~-g~ 276 (353)
T 2yrr_A 267 VLEELKAR-GF 276 (353)
T ss_dssp HHHHHHHT-TC
T ss_pred HHHHHHHC-CC
Confidence 99999876 44
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-19 Score=181.72 Aligned_cols=211 Identities=12% Similarity=0.051 Sum_probs=143.5
Q ss_pred HHHHHHHHHhhhC--------CCcEEE--eCCHHHHHHHHHHHhc---cCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 212 TVVVEEKMSALEG--------AESTVI--MASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 212 ~~~Lee~lA~l~g--------~e~~v~--~~SG~aAi~~al~all---~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
...|++.++++++ .++.++ +++|++|+.+++..+. ++||+|++++|+|......+ +..|.++.
T Consensus 73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~ 148 (401)
T 7aat_A 73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQ 148 (401)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH----HHTTCEEE
T ss_pred CHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH----HHcCCeeE
Confidence 4456666666553 345554 5666699998876654 89999999999999876544 34566666
Q ss_pred EeCC-------CCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccch---
Q 012321 279 VIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA--- 343 (466)
Q Consensus 279 ~vd~-------~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~p--- 343 (466)
.++. .|++++++.+++ .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|........
T Consensus 149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 228 (401)
T 7aat_A 149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRD 228 (401)
T ss_dssp EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred eeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCcccc
Confidence 5542 267766666642 24899999999999998875 77889999999999999999876543211
Q ss_pred --------hccCCcEEEeccccccccccCceEEEEEe---ChH----HHHHHHHHHHHhCCCchHHHHHHHHHh------
Q 012321 344 --------LSLGADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRG------ 402 (466)
Q Consensus 344 --------l~~gaDivv~S~sK~lgG~gdv~gG~vvg---~~e----li~~l~~~~~~~G~~ls~~~A~l~lrg------ 402 (466)
......+++.|+||.++.+|.. .|+++. +++ +++.++..........+...+..+...
T Consensus 229 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~R-iG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (401)
T 7aat_A 229 AWALRHFIEQGIDVVLSQSYAKNMGLYGER-AGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPEL 307 (401)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCCcEEEEecCCcccccccCc-eEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHH
Confidence 1123568999999999988854 566554 565 445555544443333334433333221
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 403 ----MKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 403 ----L~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+.+....++..++++.+.+.|+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 336 (401)
T 7aat_A 308 RKEWLVEVKGMADRIISMRTQLVSNLKKE 336 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2335555667778888999999876
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=186.78 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=145.7
Q ss_pred hHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 211 TTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e---~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.++++.+.+....+.+ +.+++++|++|+..++.+++++||+|++++|+|...... +...|.++..++.
T Consensus 85 lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~ 160 (418)
T 3rq1_A 85 FLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVI----CSDTGRTLVTYSLFDEHN 160 (418)
T ss_dssp HHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECSBCTTS
T ss_pred HHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHH----HHHcCCEEEEEeeeCCCC
Confidence 3444444444444555 666666777999999999999999999999999886543 3456777777753
Q ss_pred -CCHHHHHHhccCC---Cce-EEEEeCC-CCCCcccccHHH---HHHHHH------hcCCEEEEeCCCCCCCccc----h
Q 012321 283 -ADMEGLEAALNNN---NVS-LFFTESP-TNPFLRCVDVKL---VSDLCH------KKGAIVCIDGTFATPLNQK----A 343 (466)
Q Consensus 283 -~D~e~Le~ai~~~---~tk-lV~lesP-sNPtG~v~dl~~---I~ela~------~~gillIvD~t~a~~~~~~----p 343 (466)
.|+++|++++++. +++ +|++++| +||||.+.+.++ |+++|+ ++|+++|+|++|....... +
T Consensus 161 ~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~ 240 (418)
T 3rq1_A 161 NFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRA 240 (418)
T ss_dssp SBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHG
T ss_pred CcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHH
Confidence 3789999988741 255 8999999 999999998654 555565 8999999999986432211 1
Q ss_pred -hc----cCCc---EEEeccccccccccCceEEEEEe---ChHHHHHHHHHHHHhC----CCchHHHHHHHHHhhH----
Q 012321 344 -LS----LGAD---LVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVLG----GALNPNAAYLIIRGMK---- 404 (466)
Q Consensus 344 -l~----~gaD---ivv~S~sK~lgG~gdv~gG~vvg---~~eli~~l~~~~~~~G----~~ls~~~A~l~lrgL~---- 404 (466)
.. ...| +++.|+||.++.+|. +.|++++ ++++++.++..+.... ...+...+..+...++
T Consensus 241 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 319 (418)
T 3rq1_A 241 FFNKFSHLPKEILTCVCYSLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAK 319 (418)
T ss_dssp GGGGGTTCCTTEEEEEEEESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhcCCCceEEEEEeCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHH
Confidence 11 1223 788999999987774 5688888 8999988877654321 2344444443333322
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 ------TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 ------tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+....++..++++.+.+.|+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 348 (418)
T 3rq1_A 320 FKEYEAERNCYYQLIRDRADIFKQEAAQV 348 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22233455667778888888765
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=185.19 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=166.9
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-------ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-------l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
..+...++++.+++++|.+++++++||++|+..++.++ +++||+|+++.++|.++...+ ...|.++.++
T Consensus 32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~ 107 (390)
T 3b8x_A 32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFV 107 (390)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEE
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence 46889999999999999999999999999999999998 789999999999999876543 3467787777
Q ss_pred CCC------CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCC--cEEE
Q 012321 281 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVL 352 (466)
Q Consensus 281 d~~------D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~ga--Divv 352 (466)
+.. |+++|+++++++ +++|+++ |++|...|+++|.++|+++|+++|+|++++.+........|. |+.+
T Consensus 108 ~~~~~~~~~d~~~l~~~i~~~-~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~ 183 (390)
T 3b8x_A 108 DIDINTLNIDIESLKEAVTDS-TKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT 183 (390)
T ss_dssp CBCTTTCSBCHHHHHHHCCTT-EEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred ecCccccCcCHHHHHHHhCcC-CeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence 532 899999999874 9999996 356777999999999999999999999998765444444565 4444
Q ss_pred ecc--ccccccccCceEEEEEeCh-HHHHHHHHHHHH-----------------------------hC--CCchHHHHHH
Q 012321 353 HSA--TKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----------------------------LG--GALNPNAAYL 398 (466)
Q Consensus 353 ~S~--sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~-----------------------------~G--~~ls~~~A~l 398 (466)
.|+ +|.++++ .||++++++ ++.++++..... .| ..+++..+++
T Consensus 184 ~s~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~ 260 (390)
T 3b8x_A 184 FSSFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI 260 (390)
T ss_dssp EECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred EEccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence 432 3444332 368998875 677766654321 11 1166778888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 399 IIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 399 ~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
++..++.++.++++..++++++.+.|+++|+++
T Consensus 261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 293 (390)
T 3b8x_A 261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLD 293 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 877888898889999999999999999988764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=189.83 Aligned_cols=211 Identities=13% Similarity=0.064 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHhhhCC--CcEEEeCCHHHHH--HHHHHHhcc--C----------CCEEEEcCCCccchHHHHHhhcccC
Q 012321 210 PTTVVVEEKMSALEGA--ESTVIMASGMSAS--TVMLLALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi--~~al~all~--p----------GD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.....|++.|+++++. ++.++++++++++ .+++.+++. + ||+|++++|+|......+ +..
T Consensus 78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~----~~~ 153 (427)
T 3ppl_A 78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSIT----ERF 153 (427)
T ss_dssp SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHT
T ss_pred CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHH----HHc
Confidence 3467899999999886 3455555555888 478888877 6 999999999999866443 345
Q ss_pred CcEEEEeCC----CCHHHHHHhccCCCceEEEEe-CCCCCCcccccHH---HHHHHH-HhcCCEEEEeCCCCCCCcc---
Q 012321 274 GITATVIDP----ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 274 gi~v~~vd~----~D~e~Le~ai~~~~tklV~le-sPsNPtG~v~dl~---~I~ela-~~~gillIvD~t~a~~~~~--- 341 (466)
|.++..++. .|+++|+++++..++++|++. +|+||||.+++.+ +|+++| +++|+++|+|++|....+.
T Consensus 154 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~ 233 (427)
T 3ppl_A 154 GFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF 233 (427)
T ss_dssp TCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence 766666542 489999999954459999876 7899999999876 888888 9999999999998753211
Q ss_pred ----chh-------ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-----
Q 012321 342 ----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----- 405 (466)
Q Consensus 342 ----~pl-------~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t----- 405 (466)
... ..+.++++.|+||+ +++| .+.|++++++++++.++......+...+.+.++.+...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 311 (427)
T 3ppl_A 234 PEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVR 311 (427)
T ss_dssp CCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred CCccchhhhhhccCCCCcEEEEechhhc-cCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHH
Confidence 111 23567999999999 5555 46799999999999998887766666666655544433332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHc
Q 012321 406 --LHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 406 --l~~R~e~~~~na~~La~~L~~ 426 (466)
+....+...++.+.+.+.|.+
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~L~~ 334 (427)
T 3ppl_A 312 AVMRKHAASLAPKFNKVLEILDS 334 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334445566666666644
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=194.30 Aligned_cols=215 Identities=12% Similarity=0.068 Sum_probs=159.9
Q ss_pred HHHHHHHHHhhhCCC----cE--EEeCCHHHHHHHHHHHhccCC--------CEEEEcCCCccchHHHHHhhcccCCcEE
Q 012321 212 TVVVEEKMSALEGAE----ST--VIMASGMSASTVMLLALVPAG--------GHIVTTTDCYRKTRIFIETVLPKMGITA 277 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e----~~--v~~~SG~aAi~~al~all~pG--------D~VLv~~~~y~~t~~~~~~~l~~~gi~v 277 (466)
.+++++++++++|.+ +. +++++|++|+..++.++..+| |+|+++.+.|.+.... +...|+++
T Consensus 141 e~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~----~~~~G~~v 216 (514)
T 3mad_A 141 EAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA----AQYFGIKL 216 (514)
T ss_dssp HHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH----HHHHTCEE
T ss_pred HHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH----HHHcCCee
Confidence 345566778888875 44 788888899999999998776 9999999999986543 33457888
Q ss_pred EEeCCC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc------------
Q 012321 278 TVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------------ 340 (466)
Q Consensus 278 ~~vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~------------ 340 (466)
..++.. |+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+..
T Consensus 217 ~~v~~~~~~~~d~~~Le~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~ 295 (514)
T 3mad_A 217 VRTPLDADYRADVAAMREAITPN-TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 295 (514)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTT-EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCC
T ss_pred EEeeeCCCCCCCHHHHHHHhccC-CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCc
Confidence 877643 899999999874 99999999999999999999999999999999999999876432
Q ss_pred cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH------------HhCCCc--hHHHHHHHHHh--hH
Q 012321 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH------------VLGGAL--NPNAAYLIIRG--MK 404 (466)
Q Consensus 341 ~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~------------~~G~~l--s~~~A~l~lrg--L~ 404 (466)
......|+|+++.|++|++.++. ..|+++.+++.+.+...... ..|... ....+|.+++. ..
T Consensus 296 ~~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~ 373 (514)
T 3mad_A 296 FDFRLEGVTSVSADTHKYGYGAK--GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373 (514)
T ss_dssp CSTTSTTCCEEEECTTTTTCCCS--SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhccCCCC--CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence 22234578999999999966554 24777666554433211000 011111 12345555543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 405 TLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 405 tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
.+..++++..++++++.+.|++.|+++.+
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 402 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKIL 402 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEES
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Confidence 56778889999999999999998877543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=190.57 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=149.8
Q ss_pred HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCCC--------------EEEEc-CCCccchHHHHH-
Q 012321 212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGG--------------HIVTT-TDCYRKTRIFIE- 267 (466)
Q Consensus 212 ~~~Lee~lA~l~----g----~e~~v~~~SG~aAi~~al~all~pGD--------------~VLv~-~~~y~~t~~~~~- 267 (466)
...|++.+++++ | .++.+++++|++|+.+++.+++++|| +|+++ .|.|........
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~ 164 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVE 164 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSS
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccc
Confidence 456777777665 2 36788888888999999999999998 88876 889987542210
Q ss_pred -hhcccCCcEEEEeC----------CCCHHHHHHh---ccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEE
Q 012321 268 -TVLPKMGITATVID----------PADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVC 330 (466)
Q Consensus 268 -~~l~~~gi~v~~vd----------~~D~e~Le~a---i~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillI 330 (466)
..+...+..+..++ ..|+++|+++ +++ ++++|++++|+||||.+++ +++|.++|+++|+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li 243 (444)
T 3if2_A 165 GQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLI 243 (444)
T ss_dssp SCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEE
Confidence 02344566665544 3589999988 565 4999999999999999998 8889999999999999
Q ss_pred EeCCCCCCCc------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012321 331 IDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK 404 (466)
Q Consensus 331 vD~t~a~~~~------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~ 404 (466)
+|++|+.+.. ..+...+.++++.|+||+ +++| .+.|++++++++++.++......+...++..+..+...++
T Consensus 244 ~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 321 (444)
T 3if2_A 244 IDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVA 321 (444)
T ss_dssp EECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred EECCCCCcccccccccccccCCCCEEEEechhhc-cCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 9999975322 111224678999999997 5555 4679999999999998877665443333333333222222
Q ss_pred H------HHH-HHHHHHHHHHHHHHHHHc-CCC
Q 012321 405 T------LHL-RVQQQNSTALRMAKILEA-HPK 429 (466)
Q Consensus 405 t------l~~-R~e~~~~na~~La~~L~~-~p~ 429 (466)
. +.. ..+.+.++.+.+.+.|.+ .+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 354 (444)
T 3if2_A 322 NDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD 354 (444)
T ss_dssp TSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 111 233455666777777765 343
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=187.45 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=154.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhh-CCC-------cEEE--eCCHHHHHHH--HHHHhccCCCEEEEcCCCccchHHHHHh
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALE-GAE-------STVI--MASGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIET 268 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~-g~e-------~~v~--~~SG~aAi~~--al~all~pGD~VLv~~~~y~~t~~~~~~ 268 (466)
.+.|. ..+....+++.+++++ |.+ +.++ +++|++|+.+ .+.+++.+||+|++++|+|......+..
T Consensus 87 ~~~Y~--~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~ 164 (448)
T 3meb_A 87 NKEYP--PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDK 164 (448)
T ss_dssp CCSCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHH
T ss_pred CCCCC--CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHh
Confidence 34454 2334567888888876 643 4555 6677799977 5567788999999999999987665542
Q ss_pred hcccCCcEEEEeCC---C-----CHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012321 269 VLPKMGITATVIDP---A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF 335 (466)
Q Consensus 269 ~l~~~gi~v~~vd~---~-----D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~ 335 (466)
.++..|.++..++. . |++++++++++ .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|
T Consensus 165 ~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay 244 (448)
T 3meb_A 165 VFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY 244 (448)
T ss_dssp HHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred hHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 23356766665543 2 89999999874 24789999999999999987 456999999999999999998
Q ss_pred CCCCccc------hh----ccC-CcEEEeccccccccccCceEEEE--Ee---------Ch----HHHHHHHHHHHHhCC
Q 012321 336 ATPLNQK------AL----SLG-ADLVLHSATKFIGGHNDVLAGSI--SG---------SG----KLVTQIRNLHHVLGG 389 (466)
Q Consensus 336 a~~~~~~------pl----~~g-aDivv~S~sK~lgG~gdv~gG~v--vg---------~~----eli~~l~~~~~~~G~ 389 (466)
....... .+ ..+ ..+++.|+||.++.+|.. .|++ ++ ++ ++++.++........
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R-iG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 323 (448)
T 3meb_A 245 QGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGER-IGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWS 323 (448)
T ss_dssp TTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC-CEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccc-ceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccC
Confidence 7543221 11 223 347899999999988754 5665 55 45 556666655444444
Q ss_pred CchHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 390 ALNPNAAYLIIRGM----------KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 390 ~ls~~~A~l~lrgL----------~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
..+...++.+...+ +.+....+++.++++.+.+.|+++
T Consensus 324 ~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 324 MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445444433332 235555667788888999999886
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=192.78 Aligned_cols=216 Identities=10% Similarity=0.087 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCE---EEEcCCCccchHHHHHhhcccCCcEE-----EE
Q 012321 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGH---IVTTTDCYRKTRIFIETVLPKMGITA-----TV 279 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~pGD~---VLv~~~~y~~t~~~~~~~l~~~gi~v-----~~ 279 (466)
+..+++++++++++|++ +.++++++++++.+++.+++++||+ ||++.+.|++....+...++..|+++ ..
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~ 190 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI 190 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence 45678999999999973 5666667779999999999876655 99999999987665555555566552 22
Q ss_pred eC-----CCCHHHHHHhccC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEE
Q 012321 280 ID-----PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLV 351 (466)
Q Consensus 280 vd-----~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDiv 351 (466)
.+ ..|+++|+++|++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|++
T Consensus 191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~ 270 (465)
T 3e9k_A 191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFA 270 (465)
T ss_dssp CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEE
T ss_pred ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEE
Confidence 22 2379999999962 2499999999999999999999999999999999999999887654 23335689999
Q ss_pred Eeccccccc-cccCceEEEEEeChHHHHHHHHHHH---------H----------------hCCCchHHHHHHHHHhhHH
Q 012321 352 LHSATKFIG-GHNDVLAGSISGSGKLVTQIRNLHH---------V----------------LGGALNPNAAYLIIRGMKT 405 (466)
Q Consensus 352 v~S~sK~lg-G~gdv~gG~vvg~~eli~~l~~~~~---------~----------------~G~~ls~~~A~l~lrgL~t 405 (466)
+.|++|+++ |++ ..|+++.++++++.+..... . ..++.+......+..+++.
T Consensus 271 ~~s~~K~l~~gp~--~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~ 348 (465)
T 3e9k_A 271 CWCSYKYLNAGAG--GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI 348 (465)
T ss_dssp EECSSSTTCCCTT--CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred EECcccccccCCC--ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH
Confidence 999999995 554 23677778877654431100 0 0013333333332333333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHcC
Q 012321 406 -----LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 406 -----l~~R~e~~~~na~~La~~L~~~ 427 (466)
++...++..++++++.+.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 349 FKQATMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566677788888888874
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=183.56 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.|...+|++++++++|.++++++++|++|+.+++.++ +++||+|+++.+.|.++...+. ..|+++.+++.
T Consensus 31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~ 106 (394)
T 1o69_A 31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC----YLKAKPVFIDCDETYN 106 (394)
T ss_dssp THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH----HTTCEEEEECBCTTSS
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH----HcCCEEEEEEeCCCCC
Confidence 4779999999999999988999999999999999999 8999999999999999765443 36778777763
Q ss_pred CCHHHHHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchh---c-cCCcEEEeccc
Q 012321 283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---S-LGADLVLHSAT 356 (466)
Q Consensus 283 ~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl---~-~gaDivv~S~s 356 (466)
.|+++|++++++. ++++|++++ |+|...|+++|.++|+++|+++|+|++|+.+...... . .++|+...|.+
T Consensus 107 ~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~ 183 (394)
T 1o69_A 107 IDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN 183 (394)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred cCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCC
Confidence 4899999998752 489999975 7899999999999999999999999999854322111 1 23556666668
Q ss_pred cccccccCceEEEEEeC-hHHHHHHHHHHHHhCC--------------CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG--------------ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~--------------~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La 421 (466)
|.++|.+ +|+++++ ++++++++........ .+++..+.+++..++.++.++++..++++++.
T Consensus 184 K~l~~~~---~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~ 260 (394)
T 1o69_A 184 KIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK 260 (394)
T ss_dssp SSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ccCCCCC---ceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888653 7999995 7888888765332100 04556666666667778888899999999999
Q ss_pred HHHHcC
Q 012321 422 KILEAH 427 (466)
Q Consensus 422 ~~L~~~ 427 (466)
+.|++.
T Consensus 261 ~~L~~~ 266 (394)
T 1o69_A 261 EFLGEY 266 (394)
T ss_dssp HHHTTT
T ss_pred HHhccc
Confidence 999875
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=187.33 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=156.1
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc------cCCCE-EEEcCCCccchHHHHHhhcccC--CcEE
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGH-IVTTTDCYRKTRIFIETVLPKM--GITA 277 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all------~pGD~-VLv~~~~y~~t~~~~~~~l~~~--gi~v 277 (466)
.+..+++++++++++|.+ +.+++++|++++.+++.+++ ++||+ |+++.+.|+.+...+....... |+++
T Consensus 70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (416)
T 1qz9_A 70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL 149 (416)
T ss_dssp GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceE
Confidence 367789999999999974 56666777789988888776 89997 5555567776554433322223 8888
Q ss_pred EEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-chhccCCcEEEeccc
Q 012321 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSAT 356 (466)
Q Consensus 278 ~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-~pl~~gaDivv~S~s 356 (466)
..++. +++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... ....+++|+++.|++
T Consensus 150 ~~v~~--~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~ 226 (416)
T 1qz9_A 150 RLVDS--PEELPQAIDQ-DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTY 226 (416)
T ss_dssp EEESS--GGGHHHHCST-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred EEeCc--HHHHHHHhCC-CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCc
Confidence 88876 7899999987 4999999999999999999999999999999999999998754332 222457899999999
Q ss_pred cccccccCceE-EEEEeChHHHHHHHHHH-----------------------HHhCCCchHHHHHHHHHhhH-----HHH
Q 012321 357 KFIGGHNDVLA-GSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMK-----TLH 407 (466)
Q Consensus 357 K~lgG~gdv~g-G~vvg~~eli~~l~~~~-----------------------~~~G~~ls~~~A~l~lrgL~-----tl~ 407 (466)
|+++++. .+ |+++++++++++++... ....++.+......+...++ .++
T Consensus 227 K~l~~g~--~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 304 (416)
T 1qz9_A 227 KYLNGGP--GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMA 304 (416)
T ss_dssp STTCCCT--TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccCCCCC--CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 9985432 24 88888888776554321 01112233333222222222 345
Q ss_pred HHHHHHHHHHHHHHHHHHcC-C--CcE
Q 012321 408 LRVQQQNSTALRMAKILEAH-P--KVK 431 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~-p--~V~ 431 (466)
...++..++++.+.+.|++. | ++.
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~ 331 (416)
T 1qz9_A 305 SLRRKSLALTDLFIELVEQRCAAHELT 331 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeE
Confidence 56777888889999999875 5 553
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=181.39 Aligned_cols=224 Identities=13% Similarity=0.079 Sum_probs=160.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
.|.++++..+..+++++++++++|.+ +.+++++|++|+..++.+++++||+|+++++.|++.... ..+...|+++.
T Consensus 40 ~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~ 117 (359)
T 1svv_A 40 TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVV 117 (359)
T ss_dssp CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEE
T ss_pred hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeE
Confidence 46666667889999999999999863 467778888999999999999999999999999885431 02344677777
Q ss_pred EeCCC----CHHHHHHhccCC------CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC---CCC---C
Q 012321 279 VIDPA----DMEGLEAALNNN------NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATP---L 339 (466)
Q Consensus 279 ~vd~~----D~e~Le~ai~~~------~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~---a~~---~ 339 (466)
.++.. |+++|+++++++ ++++|++++| ||||.+.+ +++|.++|+++|+++|+|++| ..+ .
T Consensus 118 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 196 (359)
T 1svv_A 118 TAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN 196 (359)
T ss_dssp EECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC
T ss_pred EEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc
Confidence 77643 699999998764 2899999999 79999998 889999999999999999998 311 1
Q ss_pred ccchh--ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCC----CchHHHHHHHHHhhHHHHHHHHHH
Q 012321 340 NQKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG----ALNPNAAYLIIRGMKTLHLRVQQQ 413 (466)
Q Consensus 340 ~~~pl--~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~----~ls~~~A~l~lrgL~tl~~R~e~~ 413 (466)
..... ..+.|+++.|++|+.+ +. ..|+++.+++++++++......+. ......++.....-..+....++.
T Consensus 197 ~~~~~~~~~~~d~~~~s~~K~g~-~~--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (359)
T 1svv_A 197 DLTLADIARLTDMFYIGATKAGG-MF--GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHS 273 (359)
T ss_dssp CCCHHHHHHHCSEEEEECTTTTC-SS--CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred chhhhhhhhcCCEEEEecccCCC-CC--ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHH
Confidence 11211 1357999999999743 32 258899999888777654332232 111222211110112345566777
Q ss_pred HHHHHHHHHHHHcCCCcE
Q 012321 414 NSTALRMAKILEAHPKVK 431 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V~ 431 (466)
.++++.+.+.| +.+++.
T Consensus 274 ~~~~~~l~~~L-~~~~~~ 290 (359)
T 1svv_A 274 NKMAAILKAGL-EACGIR 290 (359)
T ss_dssp HHHHHHHHHHH-HHTTCC
T ss_pred HHHHHHHHHHh-ccCCeE
Confidence 88889999999 556553
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=183.53 Aligned_cols=228 Identities=12% Similarity=0.110 Sum_probs=162.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc-------cCCCEEEEcCCCccchHHHH-------
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIFI------- 266 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all-------~pGD~VLv~~~~y~~t~~~~------- 266 (466)
.|.|+++.++..++|++++++++|.++++++++|++|+..++..+. .++|+||+.++.|++.....
T Consensus 69 ~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~ 148 (395)
T 3nx3_A 69 LHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANE 148 (395)
T ss_dssp SCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred cccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCc
Confidence 4566777899999999999999998889999999999999988765 35799999999998743221
Q ss_pred --HhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC--
Q 012321 267 --ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-- 338 (466)
Q Consensus 267 --~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~-- 338 (466)
...+...+.++..++..|+++|+++++++ +++|+++.++|++|.+.+ +++|.++|++||++||+||+|...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~ 227 (395)
T 3nx3_A 149 KYQKPFKPLISGVKFAKYNDISSVEKLVNEK-TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227 (395)
T ss_dssp HHHGGGCSCCSCEEEECTTCHHHHHTTCCTT-EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ccccccCCCCCCcEEeCCCCHHHHHHhccCC-eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 12223344567777778999999999864 999999999999998876 999999999999999999998632
Q ss_pred ----CccchhccCCcEEEeccccccccccCceEEEEEeChHH-HHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHH
Q 012321 339 ----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQ 411 (466)
Q Consensus 339 ----~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R~e 411 (466)
..........|++ +++|.+++ | ...|++++++++ ++.++..........+++.+..++..++.+ +..++
T Consensus 228 ~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~ 303 (395)
T 3nx3_A 228 SGKFFAYEHAQILPDIM--TSAKALGC-G-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILE 303 (395)
T ss_dssp TSSSSGGGGGTCCCSEE--EECGGGTT-T-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCcchhHHhcCCCCCEE--EecccccC-C-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHH
Confidence 1122222335655 57899986 4 467899999988 777654322222345666666555555543 22344
Q ss_pred HHHHHHHHHHHHH----HcCCCcEEE
Q 012321 412 QQNSTALRMAKIL----EAHPKVKRV 433 (466)
Q Consensus 412 ~~~~na~~La~~L----~~~p~V~~V 433 (466)
+..++.+++.+.| ..+|.+..+
T Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 329 (395)
T 3nx3_A 304 NVNKLTPYLEQSLDELINEFDFCKKR 329 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4445544444444 445655443
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=189.81 Aligned_cols=217 Identities=15% Similarity=0.033 Sum_probs=159.3
Q ss_pred HHHHHHHHhhhCCC-------cEEEeCCHHHHHHHHHHHhccC--------CC-----EEEEcCCCccchHHHHHhhccc
Q 012321 213 VVVEEKMSALEGAE-------STVIMASGMSASTVMLLALVPA--------GG-----HIVTTTDCYRKTRIFIETVLPK 272 (466)
Q Consensus 213 ~~Lee~lA~l~g~e-------~~v~~~SG~aAi~~al~all~p--------GD-----~VLv~~~~y~~t~~~~~~~l~~ 272 (466)
+++++++++++|.+ ..+++++|++|+.+++.++..+ || +|+++.+.|..... .+..
T Consensus 98 ~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~----~~~~ 173 (502)
T 3hbx_A 98 NRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEK----FARY 173 (502)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHH----HHHH
T ss_pred HHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHH----HHHH
Confidence 35566688888876 3556888999999988887655 77 99999999987543 3445
Q ss_pred CCcEEEEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc------CCEEEEeCCCCCCCc
Q 012321 273 MGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPLN 340 (466)
Q Consensus 273 ~gi~v~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~------gillIvD~t~a~~~~ 340 (466)
.|++++.++. .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+..
T Consensus 174 ~G~~~~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~ 252 (502)
T 3hbx_A 174 FEVELKEVKLSEGYYVMDPQQAVDMVDEN-TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA 252 (502)
T ss_dssp TTCEEEEECCBTTBCSCCHHHHHHHCCTT-EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred cCceeEEEecCCCcCcCCHHHHHHHHhhC-CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhh
Confidence 6888887763 2899999999885 99999999999999999999999999999 999999999974321
Q ss_pred ---cchh-----ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-HHHhCCC------------chHHHHHHH
Q 012321 341 ---QKAL-----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVLGGA------------LNPNAAYLI 399 (466)
Q Consensus 341 ---~~pl-----~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-~~~~G~~------------ls~~~A~l~ 399 (466)
.... ..++|++..|++|++.++.++ |++++.+++++...... ...++.. ......|.+
T Consensus 253 p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~a 331 (502)
T 3hbx_A 253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ 331 (502)
T ss_dssp HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHH
T ss_pred hhhCcccccccCCCCceEEEECcccccCCCCCe-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHH
Confidence 1111 237899999999999777643 33444455544221110 1111111 133455555
Q ss_pred HH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeC
Q 012321 400 IR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY 435 (466)
Q Consensus 400 lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~ 435 (466)
++ +.+.+..+++++.+++++|.+.|++++.++.+..
T Consensus 332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (502)
T 3hbx_A 332 LIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK 369 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 54 5567888999999999999999999998766544
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=179.86 Aligned_cols=203 Identities=13% Similarity=0.131 Sum_probs=150.9
Q ss_pred CCchhHHHHHHHHHhhhC---C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 207 YGNPTTVVVEEKMSALEG---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g---~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
|+++....+++.++++++ . ++.+++++|++++..++.++ ||+|+++ |.|++.... ++..|.++..++
T Consensus 53 y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~----~~~~g~~~~~v~ 124 (335)
T 1uu1_A 53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIF----AKAVGAKFLEVP 124 (335)
T ss_dssp CCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHH----HHHHTCEEEECC
T ss_pred CCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHH----HHHcCCeEEEec
Confidence 344457899999999998 4 45666667779999998877 8999999 999886543 344577777765
Q ss_pred CC-----CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---cc-hhccCCcEEE
Q 012321 282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK-ALSLGADLVL 352 (466)
Q Consensus 282 ~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~---~~-pl~~gaDivv 352 (466)
.. |+++| + ++++|++++|+||||.+.+.++|.++++..| ++|+|++|..... .. ....+.++++
T Consensus 125 ~~~~~~~d~~~l-----~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~ 197 (335)
T 1uu1_A 125 LTKDLRIPEVNV-----G-EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVI 197 (335)
T ss_dssp CCTTSCCCCCCC-----C-TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEE
T ss_pred cCCCCCCCHHHc-----C-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEE
Confidence 32 34433 3 4899999999999999999999999999889 9999999864211 11 1123568999
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL---~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.|+||+++.+| .+.|+++++++++++++.....+ +.++..++.+...+ +.+..+.++..++++.+.+.|+++
T Consensus 198 ~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 272 (335)
T 1uu1_A 198 RTFSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPF--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM 272 (335)
T ss_dssp EESTTTTTCGG-GCCEEEEECHHHHHHHHHHSCTT--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhcCCcc-cCeEEEEeCHHHHHHHHHhcCCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999998666 45799999999998887765443 34454444443333 346667777888899999999876
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=188.42 Aligned_cols=212 Identities=12% Similarity=0.092 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE-------
Q 012321 210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT------- 276 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~------- 276 (466)
+...+|++++++++ +. ++.++++++++++..+ .+++++||+|++++|+|.+....+.. .|.+
T Consensus 111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~g~~~~~~ 185 (449)
T 3qgu_A 111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVM----MGMTGDHNGTG 185 (449)
T ss_dssp TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHH----HTCSCCBCSSS
T ss_pred CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHH----cCCcccccccc
Confidence 44678999999987 33 4566666666898887 88899999999999999987654432 3433
Q ss_pred ---EEEeCCCCHHHHHHhccC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chh
Q 012321 277 ---ATVIDPADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL 344 (466)
Q Consensus 277 ---v~~vd~~D~e~Le~ai~~-~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl 344 (466)
+..++..+.+.+...+.+ .++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~ 265 (449)
T 3qgu_A 186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIY 265 (449)
T ss_dssp BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGG
T ss_pred cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHh
Confidence 444443221122111211 24899999999999999986 778888899999999999998753221 111
Q ss_pred ----ccCCcEEEeccccccccccCceEEEEEeChHHHH--------HHHHHHHHhCCCchHHHHHHHHHh-----hHHHH
Q 012321 345 ----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT--------QIRNLHHVLGGALNPNAAYLIIRG-----MKTLH 407 (466)
Q Consensus 345 ----~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~--------~l~~~~~~~G~~ls~~~A~l~lrg-----L~tl~ 407 (466)
..+.++++.|+||.++.+| .+.|++++++++++ .+...........++..+..+... .+.+.
T Consensus 266 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 344 (449)
T 3qgu_A 266 EIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMN 344 (449)
T ss_dssp GSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred hccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHH
Confidence 1346799999999998666 35789999887764 344433333334455444433333 34466
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 012321 408 LRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~ 427 (466)
.+.+++.++++.+.+.|+++
T Consensus 345 ~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 345 AMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 67778888999999999876
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=188.30 Aligned_cols=214 Identities=13% Similarity=-0.039 Sum_probs=155.7
Q ss_pred HHHHHHHHHhhhCCC--c-----EEEeCCHHHHHHHHHHHhcc--------CC-----CEEEEcCCCccchHHHHHhhcc
Q 012321 212 TVVVEEKMSALEGAE--S-----TVIMASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVLP 271 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e--~-----~v~~~SG~aAi~~al~all~--------pG-----D~VLv~~~~y~~t~~~~~~~l~ 271 (466)
.+++++++++++|.+ . ++++++|++|+.+++.++.. +| ++|++++ .|..... .+.
T Consensus 83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~----~~~ 157 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHK----FAR 157 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHH----HHH
T ss_pred HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHH----HHH
Confidence 456677778999874 2 67888888999998887754 55 5999998 7766443 344
Q ss_pred cCCcEEEEeCCC------CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc------CCEEEEeCCCCCCC
Q 012321 272 KMGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPL 339 (466)
Q Consensus 272 ~~gi~v~~vd~~------D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~------gillIvD~t~a~~~ 339 (466)
..|++++.++.. |+++|+++|+++ |++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+.
T Consensus 158 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~ 236 (452)
T 2dgk_A 158 YWDVELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL 236 (452)
T ss_dssp HTTCEEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred HcCceEEEEecCCCCCeECHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence 568888887642 799999999875 99999999999999999999999999995 99999999997643
Q ss_pred c---cc--hh---ccCCcEEEeccccccccccCceEEEEEeCh-HHH-HHHHHHHHHhCC----------C--chHHHHH
Q 012321 340 N---QK--AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLV-TQIRNLHHVLGG----------A--LNPNAAY 397 (466)
Q Consensus 340 ~---~~--pl---~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli-~~l~~~~~~~G~----------~--ls~~~A~ 397 (466)
. .. +. ..++|+++.|+||++.++. ..|+++.++ +++ +.+......++. . ......|
T Consensus 237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 314 (452)
T 2dgk_A 237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQY 314 (452)
T ss_dssp HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHH
T ss_pred HHhhCccchhhcCCCCCcEEEECcccccCCCC--CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHH
Confidence 2 11 11 2378999999999886654 357777754 333 333211111111 1 1334455
Q ss_pred HHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 398 LIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 398 l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
.+++ +.+.+..++++..++++++.+.|+++|.++.+
T Consensus 315 aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 352 (452)
T 2dgk_A 315 YEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI 352 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 5554 44567788889999999999999999877544
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-19 Score=181.30 Aligned_cols=214 Identities=14% Similarity=0.154 Sum_probs=147.4
Q ss_pred hHHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCCC-----EEEEc-CCCccchHHHHHh--hcccCC
Q 012321 211 TTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGG-----HIVTT-TDCYRKTRIFIET--VLPKMG 274 (466)
Q Consensus 211 ~~~~Lee~lA~l~----g----~e~~v~~~SG~aAi~~al~all~pGD-----~VLv~-~~~y~~t~~~~~~--~l~~~g 274 (466)
....|++.+++++ | .++.+++++|++|+.+++.+++++|| +|+++ .|.|.+....... .+...+
T Consensus 76 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~ 155 (417)
T 3g7q_A 76 GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSAR 155 (417)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcccc
Confidence 3567777777765 3 25777777888999999999999988 99997 9999875533211 122334
Q ss_pred cEEEEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012321 275 ITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----- 340 (466)
Q Consensus 275 i~v~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----- 340 (466)
..+..++. .|+++|+ +++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+..
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~ 232 (417)
T 3g7q_A 156 PNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFS 232 (417)
T ss_dssp CEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCS
T ss_pred CcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccc
Confidence 45544432 3777777 555 4999999999999999998 88999999999999999999975321
Q ss_pred -cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------HHH-HHHH
Q 012321 341 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQQ 412 (466)
Q Consensus 341 -~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t------l~~-R~e~ 412 (466)
..+...+.++++.|+|| ++++| .+.|+++++++++++++......+...+++.+..+...++. +.. ..+.
T Consensus 233 ~~~~~~~~~~i~~~s~sK-~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 310 (417)
T 3g7q_A 233 EARPLWNPNIILCMSLSK-LGLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPF 310 (417)
T ss_dssp CCCCCCCTTEEEEEESGG-GTCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHH
T ss_pred ccccCCCCCEEEEEechh-ccCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 11223467899999999 46665 46789999999999998877766654444444433332221 111 2344
Q ss_pred HHHHHHHHHHHHHc-CCC
Q 012321 413 QNSTALRMAKILEA-HPK 429 (466)
Q Consensus 413 ~~~na~~La~~L~~-~p~ 429 (466)
..++.+.+.+.|++ .+.
T Consensus 311 ~~~~~~~~~~~l~~~l~~ 328 (417)
T 3g7q_A 311 YYQRVQQTIAIIRRYLSE 328 (417)
T ss_dssp HHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 56677777777766 343
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=182.20 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=142.8
Q ss_pred HHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEeCC-----CCHH
Q 012321 214 VVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP-----ADME 286 (466)
Q Consensus 214 ~Lee~lA~l~g~e~~-v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~-~l~~~gi~v~~vd~-----~D~e 286 (466)
.+++++++++|.+.. +++++|++|+.+++.+++++||+|++..+.|++....... .....++.+..++. .|++
T Consensus 75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 154 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE 154 (417)
T ss_dssp HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence 344588999998655 8899999999999999999999999999999875431111 11113344444432 5899
Q ss_pred HHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCCcEEEecccccccc
Q 012321 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGG 361 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~gaDivv~S~sK~lgG 361 (466)
+|++++++.++++|++++|+| |.+.|+++|.++|+++|+++|+|+++..+.. ..++. +.|+++.|+||+|+|
T Consensus 155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g 231 (417)
T 3n0l_A 155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG 231 (417)
T ss_dssp HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence 999999733489999888776 8899999999999999999999999643322 11222 479999999999976
Q ss_pred ccCceEEEEEeC-hHHHHHHHHHHHHh--CCCchHH-HH-HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 362 HNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPN-AA-YLIIRG--MKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 362 ~gdv~gG~vvg~-~eli~~l~~~~~~~--G~~ls~~-~A-~l~lrg--L~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+ ++|+++++ +++++.++...... ++..... .+ ..++.. .+.+..+.++..++++.+.+.|++
T Consensus 232 ~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 300 (417)
T 3n0l_A 232 P---RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD 300 (417)
T ss_dssp C---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5 37999998 78888887654422 1212221 11 112222 245667778888899999999987
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=184.45 Aligned_cols=211 Identities=11% Similarity=0.104 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHH--HHHHHhcc--C---------CCEEEEcCCCccchHHHHHhhcccCC
Q 012321 210 PTTVVVEEKMSALEGA--ESTVIMASGMSAST--VMLLALVP--A---------GGHIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~--~al~all~--p---------GD~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
+...+|++.++++++. ++.+++++|++++. +++.+++. + ||+|+++.|+|......+ ...|
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g 145 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL----QTLG 145 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH----HHHT
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH----HHcC
Confidence 3467899999999986 34555555668997 88888887 7 599999999998866544 3346
Q ss_pred cEEEEeCC----CCHHHHHHhcc-CCCceEEEEe-CCCCCCcccccHH---HHHHHH-HhcCCEEEEeCCCCCCCcc---
Q 012321 275 ITATVIDP----ADMEGLEAALN-NNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 275 i~v~~vd~----~D~e~Le~ai~-~~~tklV~le-sPsNPtG~v~dl~---~I~ela-~~~gillIvD~t~a~~~~~--- 341 (466)
.++..++. .|+++|+++++ ..++++|++. +|+||||.+++.+ +|+++| +++|+++|+|++|....+.
T Consensus 146 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~ 225 (423)
T 3ez1_A 146 FELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED 225 (423)
T ss_dssp CEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred CEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence 66655542 48999999994 2359999865 8999999999876 888888 8999999999998742111
Q ss_pred -----chh-------ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----
Q 012321 342 -----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---- 405 (466)
Q Consensus 342 -----~pl-------~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t---- 405 (466)
... ..+.++++.|+||+ .++| .+.|++++++++++.++......+...++..++.+...++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 303 (423)
T 3ez1_A 226 RAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG 303 (423)
T ss_dssp CCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH
T ss_pred CCCCcchhhhhhccCCCCeEEEEeCchhh-ccCC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch
Confidence 111 23567999999998 4444 45789999999999998887776666666655544443333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHc
Q 012321 406 ----LHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 406 ----l~~R~e~~~~na~~La~~L~~ 426 (466)
+....+...++.+.+.+.|.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (423)
T 3ez1_A 304 LEGLMRDHAAIIAPKFRAVDEVLRA 328 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233334455555555543
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=184.58 Aligned_cols=216 Identities=15% Similarity=0.120 Sum_probs=156.2
Q ss_pred CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHH-HHHhhcc---------c
Q 012321 207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETVLP---------K 272 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~-~~~~~l~---------~ 272 (466)
+..+..++++++++++++ .++++++++|++|+.+++.++. .+||+||+.++.|++... .+. ... .
T Consensus 84 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~~p 162 (395)
T 1vef_A 84 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLP 162 (395)
T ss_dssp SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCS
T ss_pred cCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCcccccccCC
Confidence 467889999999999995 4677888889999999998764 689999999999876432 222 111 1
Q ss_pred CCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC-c-----cc
Q 012321 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N-----QK 342 (466)
Q Consensus 273 ~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~-~-----~~ 342 (466)
...++..++..|+++|++++++ ++++|+++.++||||.+.+ +++|.++|+++|+++|+|++|+... . ..
T Consensus 163 ~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~ 241 (395)
T 1vef_A 163 LVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFE 241 (395)
T ss_dssp CSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred CCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhh
Confidence 1112555666799999999986 4999999877899999888 9999999999999999999988321 1 12
Q ss_pred hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHH
Q 012321 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRM 420 (466)
Q Consensus 343 pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~L 420 (466)
....+.|++ |++|++++ | .+.|+++++++++++++..........++..++.+...++.+. ...++..++++.+
T Consensus 242 ~~~~~~d~~--s~sK~~~~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l 317 (395)
T 1vef_A 242 HFGIVPDIL--TLAKALGG-G-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF 317 (395)
T ss_dssp HHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcCCCCCEE--EEcccccC-C-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233457866 78999997 4 3468888888877766542111223345666655555555543 2456677888889
Q ss_pred HHHHHcCC
Q 012321 421 AKILEAHP 428 (466)
Q Consensus 421 a~~L~~~p 428 (466)
.+.|++.+
T Consensus 318 ~~~l~~~~ 325 (395)
T 1vef_A 318 MEKLRAIP 325 (395)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHhh
Confidence 99998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=186.72 Aligned_cols=215 Identities=11% Similarity=0.072 Sum_probs=150.4
Q ss_pred CCCchh-HHHHHHHHHhhhCCC-cEEEeCCH-HHHH--HHHHHHhccC------------CCEEEEcCCCccchHHHHHh
Q 012321 206 RYGNPT-TVVVEEKMSALEGAE-STVIMASG-MSAS--TVMLLALVPA------------GGHIVTTTDCYRKTRIFIET 268 (466)
Q Consensus 206 R~~~p~-~~~Lee~lA~l~g~e-~~v~~~SG-~aAi--~~al~all~p------------GD~VLv~~~~y~~t~~~~~~ 268 (466)
+|+++. ...|++.++++++.+ +.|++++| ++++ .+++..+.++ +|+|++++|+|.+....+
T Consensus 71 ~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~-- 148 (422)
T 3d6k_A 71 NYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT-- 148 (422)
T ss_dssp SSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH--
T ss_pred CCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH--
Confidence 344443 678999999999863 44555555 4776 5666777666 348999999999866444
Q ss_pred hcccCCcEEEEeCC----CCHHHHHHhccCCCceEEE-EeCCCCCCcccccHH---HHHHHHH-hcCCEEEEeCCCCC--
Q 012321 269 VLPKMGITATVIDP----ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFAT-- 337 (466)
Q Consensus 269 ~l~~~gi~v~~vd~----~D~e~Le~ai~~~~tklV~-lesPsNPtG~v~dl~---~I~ela~-~~gillIvD~t~a~-- 337 (466)
+..|.++..++. .|+++|++++++.++++|+ +++|+||||.+++.+ +|.++|+ ++|+++|+|++|..
T Consensus 149 --~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~ 226 (422)
T 3d6k_A 149 --EHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT 226 (422)
T ss_dssp --HHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred --HHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence 334666655542 5899999999764589998 689999999999876 7777787 89999999999963
Q ss_pred CCc----cchh--------ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-
Q 012321 338 PLN----QKAL--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK- 404 (466)
Q Consensus 338 ~~~----~~pl--------~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~- 404 (466)
... ..++ ..+.++++.|+||+ +++| .+.|++++++++++.++......+.+.+++.++.+...++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 304 (422)
T 3d6k_A 227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGD 304 (422)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCS
T ss_pred cCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhC
Confidence 111 1122 23567999999998 5565 4579999999999999887776665556655554444332
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHc
Q 012321 405 ------TLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 405 ------tl~~R~e~~~~na~~La~~L~~ 426 (466)
.+....+.+.++.+.+.+.|.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 332 (422)
T 3d6k_A 305 VAGLKAHMLKHAASLAPKFERVLEILDS 332 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334455566666666654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=186.59 Aligned_cols=215 Identities=14% Similarity=0.127 Sum_probs=142.2
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCccc-------------hHHH
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRK-------------TRIF 265 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all--------~pGD~VLv~~~~y~~-------------t~~~ 265 (466)
.+..+++++++++++|.+ +.+++++|++|+.+++.+++ ++||+|++..|.|.. ....
T Consensus 60 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~ 139 (432)
T 3a9z_A 60 KDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLP 139 (432)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHH
Confidence 345689999999999973 56666677899999998876 589888877777754 2222
Q ss_pred HHhhcccCCcEEEEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC----------CEE
Q 012321 266 IETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----------AIV 329 (466)
Q Consensus 266 ~~~~l~~~gi~v~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~g----------ill 329 (466)
+....+..|.++..++. .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++| +++
T Consensus 140 ~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~l 218 (432)
T 3a9z_A 140 LEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT-TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLV 218 (432)
T ss_dssp HHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred HHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCC-ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEE
Confidence 33334456888877764 4799999999874 999999999999999999999999999999 999
Q ss_pred EEeCCCCCCCc-cchhccCCcEEEeccccccccccCceEEEEEeChHH-HHHHHHH-------HHHhCCCchHHHHHHHH
Q 012321 330 CIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNL-------HHVLGGALNPNAAYLII 400 (466)
Q Consensus 330 IvD~t~a~~~~-~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~~-------~~~~G~~ls~~~A~l~l 400 (466)
|+|++|+.+.. ......+.|+++.|+||++| + ..|++++++++ ..+++.. .....++.+....+.+.
T Consensus 219 ivDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 294 (432)
T 3a9z_A 219 HTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P---RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLG 294 (432)
T ss_dssp EEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C---SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHH
T ss_pred EEEchhhhCCcccChhhcCCCEEEEehhHhcC-C---cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHH
Confidence 99999976532 22234578999999999875 3 26888888765 2222211 11111233333333332
Q ss_pred HhhHH----HHHHHHHHHHHHHHHHHHHHcCC
Q 012321 401 RGMKT----LHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 401 rgL~t----l~~R~e~~~~na~~La~~L~~~p 428 (466)
..++. ++...++..++++++.+.|++.+
T Consensus 295 aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 326 (432)
T 3a9z_A 295 KAADLVSENCETYEAHMRDIRDYLEERLEAEF 326 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23332 34455666777888888887753
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=188.33 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHh----ccCCC-----EEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLAL----VPAGG-----HIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~-~SG~aAi~~al~al----l~pGD-----~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
...+++++++++++|.+..+++ ++|++|+..+++++ .++|| +|+++.+.|+.+... +...|+++..
T Consensus 107 ~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~----~~~~G~~vv~ 182 (474)
T 1wyu_B 107 RLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT----ASMAGYQVRE 182 (474)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH----HHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHH----HHHCCCEEEE
Confidence 3578889999999998766655 67778888766554 36888 999999999876643 3456888888
Q ss_pred eCCC-----CHHHHHHhccCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCC--ccchhccCCcEE
Q 012321 280 IDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLV 351 (466)
Q Consensus 280 vd~~-----D~e~Le~ai~~~~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~~~--~~~pl~~gaDiv 351 (466)
++.. |+++|+++++++ +++|++++| ||+|.+ .|+++|.++|+++|+++|+|++|+.+. ..++..+|+|++
T Consensus 183 v~~~~~~~~d~~~L~~~i~~~-t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~ 260 (474)
T 1wyu_B 183 IPSGPEGEVDLEALKRELGPH-VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVV 260 (474)
T ss_dssp ECBCTTSSBCHHHHHHHCSTT-EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEE
T ss_pred ecCCCCCCcCHHHHHHhhCCC-ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEE
Confidence 7753 899999999875 999999998 689998 699999999999999999999986443 234556789999
Q ss_pred Eeccccccccc-c--CceEEEEEeChHHHHHHHH-HH------------------HHhCCCchH---HHHHHHHH--hhH
Q 012321 352 LHSATKFIGGH-N--DVLAGSISGSGKLVTQIRN-LH------------------HVLGGALNP---NAAYLIIR--GMK 404 (466)
Q Consensus 352 v~S~sK~lgG~-g--dv~gG~vvg~~eli~~l~~-~~------------------~~~G~~ls~---~~A~l~lr--gL~ 404 (466)
+.|+||+|+++ | +..+|++++++++++++.. .. .....+.+. ..++..++ +.+
T Consensus 261 ~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~ 340 (474)
T 1wyu_B 261 HLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLE 340 (474)
T ss_dssp ECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHH
Confidence 99999999865 2 2346899999888766541 00 000011222 23333332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 405 TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 405 tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+..+.++..++++++.+.|++.
T Consensus 341 ~l~~~~~~~~~~~~~l~~~L~~~ 363 (474)
T 1wyu_B 341 GLKKAAALAVLNARYLKELLKEK 363 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 56667788889999999999886
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=178.42 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=149.3
Q ss_pred chhHHHHHHHHHhhh-CC-------CcEEE--eCCHHHHHHHHHH--HhccCC-----CEEEEcCCCccchHHHHHhhcc
Q 012321 209 NPTTVVVEEKMSALE-GA-------ESTVI--MASGMSASTVMLL--ALVPAG-----GHIVTTTDCYRKTRIFIETVLP 271 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~-g~-------e~~v~--~~SG~aAi~~al~--all~pG-----D~VLv~~~~y~~t~~~~~~~l~ 271 (466)
.+....|++.+++++ +. ++.++ +++|++|+.+++. .++.+| |+|+++.|.|++....+ .
T Consensus 73 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~----~ 148 (412)
T 1ajs_A 73 ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF----T 148 (412)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHH----H
T ss_pred CCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHH----H
Confidence 344678888888877 42 56666 7777799998853 556899 99999999999865433 3
Q ss_pred cCCcE-EEEeCC-------CCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012321 272 KMGIT-ATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP 338 (466)
Q Consensus 272 ~~gi~-v~~vd~-------~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~ 338 (466)
..|.+ +..++. .|+++|++++++ .++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 149 ~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~ 228 (412)
T 1ajs_A 149 TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGF 228 (412)
T ss_dssp HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTT
T ss_pred HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 35666 555543 278999998864 14789989999999999975 568999999999999999998654
Q ss_pred Ccc----c--hhc----c-CCcEEEeccccccccccCceEEEEEe---ChHH----HHHHHHHHHHhCCCchHHHHHHHH
Q 012321 339 LNQ----K--ALS----L-GADLVLHSATKFIGGHNDVLAGSISG---SGKL----VTQIRNLHHVLGGALNPNAAYLII 400 (466)
Q Consensus 339 ~~~----~--pl~----~-gaDivv~S~sK~lgG~gdv~gG~vvg---~~el----i~~l~~~~~~~G~~ls~~~A~l~l 400 (466)
... . ++. . ..++++.|+||.++++|. +.|++++ ++++ ++.++..........++..++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 307 (412)
T 1ajs_A 229 ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVA 307 (412)
T ss_dssp TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHH
T ss_pred cCCcccccchHHHHHhccCCcEEEEEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Confidence 321 1 111 1 234889999999998774 5688887 7774 444444332222222343333333
Q ss_pred HhhH----------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 401 RGMK----------TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 401 rgL~----------tl~~R~e~~~~na~~La~~L~~~p 428 (466)
..++ .+....+++.++++.+.+.|++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3332 445566677888889999998865
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=181.10 Aligned_cols=214 Identities=17% Similarity=0.159 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHhhh-CCC-------cE--EEeCCHHHHHHHH---HHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 210 PTTVVVEEKMSALE-GAE-------ST--VIMASGMSASTVM---LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 210 p~~~~Lee~lA~l~-g~e-------~~--v~~~SG~aAi~~a---l~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
+....|++.+++++ |.+ +. +.+.+|+.++..+ +.+++++||+|++++|+|.+....+ +..|.+
T Consensus 79 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~ 154 (409)
T 4eu1_A 79 TGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIF----AKAGME 154 (409)
T ss_dssp TCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHH----HHTTCE
T ss_pred CCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHcCCe
Confidence 44567888888865 432 23 3366666777654 4456789999999999999865443 446777
Q ss_pred EEEeCC-------CCHHHHHHhcc--CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc--
Q 012321 277 ATVIDP-------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-- 342 (466)
Q Consensus 277 v~~vd~-------~D~e~Le~ai~--~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~-- 342 (466)
+..++. .|+++|+++++ +.+++++++++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~ 234 (409)
T 4eu1_A 155 LTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLD 234 (409)
T ss_dssp EEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHH
T ss_pred EEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcc
Confidence 777653 27899999986 224678888999999999987 4559999999999999999987644321
Q ss_pred ----hh----cc-CCcEEEeccccccccccCceEEE---EEeChH----HHHHHHHHHHHhCCCchHHHHHHHHHhh---
Q 012321 343 ----AL----SL-GADLVLHSATKFIGGHNDVLAGS---ISGSGK----LVTQIRNLHHVLGGALNPNAAYLIIRGM--- 403 (466)
Q Consensus 343 ----pl----~~-gaDivv~S~sK~lgG~gdv~gG~---vvg~~e----li~~l~~~~~~~G~~ls~~~A~l~lrgL--- 403 (466)
+. .. ...+++.|+||.++.+|.. .|+ ++++++ +++.++..........+.+.++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r-iG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (409)
T 4eu1_A 235 YDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR-CGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDP 313 (409)
T ss_dssp HHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH
T ss_pred cchHHHHHHHhhCCcEEEEecCcccccCccCC-ceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCH
Confidence 11 11 2348899999999988754 566 466777 6666665544333334444444433332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 404 -------KTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 404 -------~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
+.+..+.+++.++++.+.+.|++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 345 (409)
T 4eu1_A 314 QLTALWKKELKQMSSRIAEVRKRLVSELKACG 345 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2355566777888899999998864
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=179.16 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=135.5
Q ss_pred cEEEeCCHHHHHHHH--HHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C---CHHHHHHhccC--C
Q 012321 227 STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A---DMEGLEAALNN--N 295 (466)
Q Consensus 227 ~~v~~~SG~aAi~~a--l~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----~---D~e~Le~ai~~--~ 295 (466)
+.+++++|++|+..+ +.+++.+||+|++++|+|.+....+ ...|.++..++. . |+++|++++++ .
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALF----DMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 345555566999988 4567899999999999999865443 345666666543 2 79999999973 2
Q ss_pred CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ch-----hccCCcEEEeccccccccc
Q 012321 296 NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA-----LSLGADLVLHSATKFIGGH 362 (466)
Q Consensus 296 ~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~p-----l~~gaDivv~S~sK~lgG~ 362 (466)
++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...... .+ ...+.++++.|+||.++.+
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 274 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLY 274 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCc
Confidence 4899999999999999975 668899999999999999998654321 11 1235679999999999977
Q ss_pred cCceEEEEE---eChHHHHHHH----HHHHHhCCCchHHHHHHH---HHh-------hHHHHHHHHHHHHHHHHHHHHHH
Q 012321 363 NDVLAGSIS---GSGKLVTQIR----NLHHVLGGALNPNAAYLI---IRG-------MKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 363 gdv~gG~vv---g~~eli~~l~----~~~~~~G~~ls~~~A~l~---lrg-------L~tl~~R~e~~~~na~~La~~L~ 425 (466)
|.. .|+++ .++++++++. ..........+...++.+ +.. .+.+....+++.++++.+.+.|+
T Consensus 275 G~R-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 353 (420)
T 4f4e_A 275 GER-VGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLK 353 (420)
T ss_dssp GGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 56654 2566665432 222212222233333322 221 23355666777888999999998
Q ss_pred cC
Q 012321 426 AH 427 (466)
Q Consensus 426 ~~ 427 (466)
++
T Consensus 354 ~~ 355 (420)
T 4f4e_A 354 AA 355 (420)
T ss_dssp HT
T ss_pred hc
Confidence 86
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=178.13 Aligned_cols=214 Identities=11% Similarity=0.084 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHhhh-C-------CCcEEE--eCCHHHHHHHH--HHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEE
Q 012321 210 PTTVVVEEKMSALE-G-------AESTVI--MASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (466)
Q Consensus 210 p~~~~Lee~lA~l~-g-------~e~~v~--~~SG~aAi~~a--l~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v 277 (466)
+....|++.+++++ + .++.++ +++|++|+.++ +..++.+||+|+++.|+|.+....+ ...|+++
T Consensus 73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~ 148 (412)
T 1yaa_A 73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF----ENQGLKT 148 (412)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH----HTTTCCE
T ss_pred CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH----HHcCceE
Confidence 33567777777766 2 355666 66777999887 3455679999999999999865433 3456666
Q ss_pred EEeCC-------CCHHHHHHhccCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----
Q 012321 278 TVIDP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---- 341 (466)
Q Consensus 278 ~~vd~-------~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~---- 341 (466)
..++. .|+++|++++++. ++.++++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 149 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 228 (412)
T 1yaa_A 149 ATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK 228 (412)
T ss_dssp EEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred EEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence 65543 3789999988653 2455556999999999975 667899999999999999998654221
Q ss_pred c--hh----ccC----CcEEEeccccccccccCceEEEEE--e-----ChH----HHHHHHHHHHHhCCCchHHHHHHHH
Q 012321 342 K--AL----SLG----ADLVLHSATKFIGGHNDVLAGSIS--G-----SGK----LVTQIRNLHHVLGGALNPNAAYLII 400 (466)
Q Consensus 342 ~--pl----~~g----aDivv~S~sK~lgG~gdv~gG~vv--g-----~~e----li~~l~~~~~~~G~~ls~~~A~l~l 400 (466)
. ++ ..+ .++++.|+||.++++|. +.|+++ + +++ ++++++..........+....+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 307 (412)
T 1yaa_A 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVA 307 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred hhHHHHHHHhcCCCCcceEEEeccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHH
Confidence 1 11 123 46889999999997674 467877 7 566 7777766443322333444333333
Q ss_pred HhhH----------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 401 RGMK----------TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 401 rgL~----------tl~~R~e~~~~na~~La~~L~~~p 428 (466)
..++ .+....+++.++++.+.+.|++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3222 345556677778888888888764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=189.14 Aligned_cols=218 Identities=12% Similarity=0.102 Sum_probs=159.7
Q ss_pred HHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc-----CC---CEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 212 TVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~-----pG---D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.+++++++++++|.+ ..+++++|++|+.+++.+++. +| |+|+++.+.|.+.... +...|+++..
T Consensus 109 ~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~----~~~~G~~~~~ 184 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKA----AYYFGMKLRH 184 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHH----HHHSCCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHH----HHHcCCeEEE
Confidence 446667788888865 577788888999999988865 56 8999999999986543 3445888877
Q ss_pred eCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-------------c
Q 012321 280 IDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-------------N 340 (466)
Q Consensus 280 vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-------------~ 340 (466)
++. .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+. .
T Consensus 185 v~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 185 VELDPTTYQVDLGKVKKFINKN-TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp ECBCTTTCSBCTTTTGGGCCSS-EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred EecCcccCcCCHHHHHHHHhhC-CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcc
Confidence 753 3689999999875 9999999999999999999999999999999999999987321 1
Q ss_pred cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-H-HhCC----------Cch--HHHHHHHHHhh--H
Q 012321 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H-VLGG----------ALN--PNAAYLIIRGM--K 404 (466)
Q Consensus 341 ~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~-~~G~----------~ls--~~~A~l~lrgL--~ 404 (466)
......|+|+++.|++|++.++. ..|+++.+++.+....... . ..+. ... ...+|.+++.+ .
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~ 341 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPK--GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCS--SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCC--CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence 23345689999999999986554 3577777766544321110 0 1111 001 33455555544 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCcEEEeCC
Q 012321 405 TLHLRVQQQNSTALRMAKILEA-HPKVKRVHYP 436 (466)
Q Consensus 405 tl~~R~e~~~~na~~La~~L~~-~p~V~~V~~P 436 (466)
.+..++++..++++++.+.|++ .|+++.+..|
T Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~ 374 (497)
T 3mc6_A 342 GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP 374 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 4567788899999999999999 5887654333
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=178.92 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=154.0
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHHHHhhcc-------
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP------- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~~~~~~l~------- 271 (466)
+.++...+|+++|+++.|.+++++++||++|+.+++..+.. +| ++||+.++.|++..........
T Consensus 96 ~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~ 175 (420)
T 2pb2_A 96 FTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG 175 (420)
T ss_dssp SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTT
T ss_pred cCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcccccc
Confidence 56788999999999999988899999999999999988765 77 5999999999774322111111
Q ss_pred --cCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc----cccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012321 272 --KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR----CVDVKLVSDLCHKKGAIVCIDGTFATPLN----- 340 (466)
Q Consensus 272 --~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~----v~dl~~I~ela~~~gillIvD~t~a~~~~----- 340 (466)
.....+..++..|+++|++++++ ++++|++|+++|++|. ..++++|.++|+++|++||+||+|.....
T Consensus 176 ~~p~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~ 254 (420)
T 2pb2_A 176 FGPKPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF 254 (420)
T ss_dssp SSSCCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH
Confidence 11123566666799999999987 4999999999888885 24689999999999999999999853211
Q ss_pred -cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHH
Q 012321 341 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTA 417 (466)
Q Consensus 341 -~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl--~~R~e~~~~na 417 (466)
........|++ |++|++++ | ...|++++++++++.++..........++..+..++..++.+ +...++..+++
T Consensus 255 ~~~~~~~~~dii--t~sK~l~~-G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~ 330 (420)
T 2pb2_A 255 AYMHYGVTPDIL--TSAKALGG-G-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKR 330 (420)
T ss_dssp HHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCeE--EecccccC-C-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 12223356877 67899994 4 356888888888776654222122234666666665555554 34566677777
Q ss_pred HHHHHHHHcC
Q 012321 418 LRMAKILEAH 427 (466)
Q Consensus 418 ~~La~~L~~~ 427 (466)
+++.+.|++.
T Consensus 331 ~~l~~~L~~~ 340 (420)
T 2pb2_A 331 QQFVQHLQAI 340 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=175.15 Aligned_cols=215 Identities=13% Similarity=0.083 Sum_probs=148.1
Q ss_pred chhHHHHHHHHHhhh---C-----CCcEEE--eCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 209 NPTTVVVEEKMSALE---G-----AESTVI--MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~---g-----~e~~v~--~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.+....|++++++++ + .++.++ +++|++|+.+++..+ +.+||+|+++.|+|++....+ ...|.+
T Consensus 68 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~ 143 (396)
T 2q7w_A 68 IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF----NSAGLE 143 (396)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH----HHTTCE
T ss_pred CCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH----HHcCCc
Confidence 344677888888876 2 245555 666779999988665 469999999999999865433 345777
Q ss_pred EEEeCC---C----CHHHHHHhccCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012321 277 ATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 277 v~~vd~---~----D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~--- 341 (466)
+..++. . |+++|++++++. +++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 144 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~ 223 (396)
T 2q7w_A 144 VREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEE 223 (396)
T ss_dssp EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHH
T ss_pred eEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccc
Confidence 666654 2 799999998752 3788999999999999985 568999999999999999998764321
Q ss_pred c--hh----cc-CCcEEEeccccccccccCceEEEEEe---ChH----HHHHHHHHHHHhCCCchHHHHHHHHHhhH---
Q 012321 342 K--AL----SL-GADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK--- 404 (466)
Q Consensus 342 ~--pl----~~-gaDivv~S~sK~lgG~gdv~gG~vvg---~~e----li~~l~~~~~~~G~~ls~~~A~l~lrgL~--- 404 (466)
. ++ .. ..++++.|+||.++.+|. +.|++++ +++ +++.+...........++..++.+...++
T Consensus 224 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 302 (396)
T 2q7w_A 224 DAEGLRAFAAMHKELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDA 302 (396)
T ss_dssp HTHHHHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred hhHHHHHHHhcCCcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChh
Confidence 1 11 12 346889999999987764 4677775 564 44444443322222335554444443332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 405 -------TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 405 -------tl~~R~e~~~~na~~La~~L~~~p 428 (466)
.+....+++.++++.+.+.|++++
T Consensus 303 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 303 LRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445566778888999998864
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=180.61 Aligned_cols=213 Identities=19% Similarity=0.162 Sum_probs=153.2
Q ss_pred CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCc--EEEEe
Q 012321 208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI 280 (466)
Q Consensus 208 ~~p~~~~Le----e~lA~l~g~e~~-v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi--~v~~v 280 (466)
+.+..+.++ +++++++|.+.. +++++|++|+..++.+++++||+|+++++.|++..... ..+...|. ....+
T Consensus 63 g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 141 (407)
T 2dkj_A 63 GCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSY 141 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEec
Confidence 556544555 489999998655 66899999999999999999999999999998753100 11222232 33333
Q ss_pred C------CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCCc
Q 012321 281 D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGAD 349 (466)
Q Consensus 281 d------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~gaD 349 (466)
+ ..|+++|++++++.++++|++++|+|| .+.|+++|.++|+++|+++|+|++|+.+.. ..++. ..|
T Consensus 142 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~d 218 (407)
T 2dkj_A 142 GVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAH 218 (407)
T ss_dssp CCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCS
T ss_pred CCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-ccc
Confidence 2 257999999997424899999999997 678999999999999999999999875221 11222 379
Q ss_pred EEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhC-CCchHHHH---HHHHHh--hHHHHHHHHHHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAA---YLIIRG--MKTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G-~~ls~~~A---~l~lrg--L~tl~~R~e~~~~na~~La~ 422 (466)
+++.|++|+++|+. +|+++++ ++++++++.....+. +..++... ..+++. .+.++.+.++..++++++.+
T Consensus 219 i~~~s~sK~l~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 295 (407)
T 2dkj_A 219 VVTSTTHKTLRGPR---GGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE 295 (407)
T ss_dssp EEEEESSGGGCCCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCCCC---ceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999998653 6999998 799988877654332 22333211 222222 24456677888889999999
Q ss_pred HHHcC
Q 012321 423 ILEAH 427 (466)
Q Consensus 423 ~L~~~ 427 (466)
.|+++
T Consensus 296 ~L~~~ 300 (407)
T 2dkj_A 296 ELARR 300 (407)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99887
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-19 Score=187.09 Aligned_cols=226 Identities=14% Similarity=0.164 Sum_probs=162.3
Q ss_pred CccCCCCchhHHHHHH----HHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc--------------CCCEEEEcCCCc
Q 012321 202 FEYGRYGNPTTVVVEE----KMSALEGAE----STVIMASGMSASTVMLLALVP--------------AGGHIVTTTDCY 259 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee----~lA~l~g~e----~~v~~~SG~aAi~~al~all~--------------pGD~VLv~~~~y 259 (466)
+.|. ..|....+|+ ++++++|.+ ..+++++|++|+..++.++.. +++.|+++...|
T Consensus 125 ~~~~--~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYE--IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTT--TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcc--cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 4444 4566666655 556677764 577888889998888877654 577899999999
Q ss_pred cchHHHHHhhcccCCc---EEEEeCC-----CCHHHHHHhccCCC-----ceEEEEeCCCCCCcccccHHHHHHHHHhcC
Q 012321 260 RKTRIFIETVLPKMGI---TATVIDP-----ADMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDVKLVSDLCHKKG 326 (466)
Q Consensus 260 ~~t~~~~~~~l~~~gi---~v~~vd~-----~D~e~Le~ai~~~~-----tklV~lesPsNPtG~v~dl~~I~ela~~~g 326 (466)
.+....+. ..|+ ++..++. .|+++|+++|++.+ +++|++++|+|++|.+.|+++|+++|+++|
T Consensus 203 ~s~~~~~~----~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~ 278 (511)
T 3vp6_A 203 YSIKKAGA----ALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 278 (511)
T ss_dssp THHHHHHH----HTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred HHHHHHHH----HcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence 88665442 3344 6666653 38999999996531 789999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCccch-----h--ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-H------------
Q 012321 327 AIVCIDGTFATPLNQKA-----L--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-V------------ 386 (466)
Q Consensus 327 illIvD~t~a~~~~~~p-----l--~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~------------ 386 (466)
+++++|++|+.+....+ + ..++|+++.++||+++++.+. +++++.+++++.++..... .
T Consensus 279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~ 357 (511)
T 3vp6_A 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC-SAILVKEKGILQGCNQMHASYLFQQDKHYDVSY 357 (511)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCC-EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGG
T ss_pred CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCe-EEEEEeCHHHHHHHhccCCccccCccccccccc
Confidence 99999999987654221 1 135799999999999887532 4444555555555321100 0
Q ss_pred --------hCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEe
Q 012321 387 --------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 434 (466)
Q Consensus 387 --------~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~ 434 (466)
.+.....+..|.+++ +.+.+..+++++.++++++.+.|+++|+++.+.
T Consensus 358 ~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~ 415 (511)
T 3vp6_A 358 DTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 415 (511)
T ss_dssp CCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESS
T ss_pred CccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 011123455555544 567788999999999999999999998876554
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-19 Score=181.23 Aligned_cols=212 Identities=11% Similarity=0.107 Sum_probs=144.6
Q ss_pred hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC---------
Q 012321 210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--------- 274 (466)
Q Consensus 210 p~~~~Lee~lA~l~----g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~g--------- 274 (466)
+....|++.+++++ +. ++.++++++++++.+ +..++++||+|++++|.|.+....+... ...+
T Consensus 98 ~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~ 175 (432)
T 3ei9_A 98 QGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKY 175 (432)
T ss_dssp TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEE
T ss_pred CCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHc-CCccccccccccc
Confidence 34578888888875 43 345555555588876 5788899999999999999876555332 2211
Q ss_pred cEEEEeCCCCH----HHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch
Q 012321 275 ITATVIDPADM----EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA 343 (466)
Q Consensus 275 i~v~~vd~~D~----e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p 343 (466)
.++.+++..+. .++++ .+ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+..... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~--~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~ 252 (432)
T 3ei9_A 176 GNIEYMRCTPENGFFPDLST--VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSI 252 (432)
T ss_dssp TTCEEEECCGGGTTSCCGGG--CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSG
T ss_pred CceEEeccCcccCCcCChhh--CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCCh
Confidence 13333332211 12222 23 4899999999999999986 667777799999999999998743221 11
Q ss_pred h----ccCCcEEEeccccccccccCceEEEEEeChHH--------HHHHHHHHHHhCCCchHHHHHHHH-----HhhHHH
Q 012321 344 L----SLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------VTQIRNLHHVLGGALNPNAAYLII-----RGMKTL 406 (466)
Q Consensus 344 l----~~gaDivv~S~sK~lgG~gdv~gG~vvg~~el--------i~~l~~~~~~~G~~ls~~~A~l~l-----rgL~tl 406 (466)
. ..+.++++.|+||.++.+|. +.|++++++++ ++.+...........++.....+. .+.+.+
T Consensus 253 ~~~~~~~~~~i~~~S~SK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 331 (432)
T 3ei9_A 253 FEIPGAEEVAMETASFSNYAGFTGV-RLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAM 331 (432)
T ss_dssp GGSTTGGGTEEEEEESHHHHCTTTT-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHH
T ss_pred hhcCCCCCeEEEEecchhccCCccc-ceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHH
Confidence 1 12457999999999987763 57899988877 677776655444444554433332 234556
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 012321 407 HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~ 427 (466)
..+.+++.++++.+.+.|+++
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~ 352 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL 352 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 777788889999999999876
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=181.26 Aligned_cols=210 Identities=19% Similarity=0.175 Sum_probs=152.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCc-cchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY-RKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y-~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.++...+|+++|+++++.++++++++|++|+.+++.+++++|| +++.+.| +.+... +...|.++..++.
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~----~~~~G~~~~~v~~~~~~ 146 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYH----QEKNGAVFVDIVRDEAH 146 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHH----HHHTTCEEEECBCGGGG
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHH----HHHcCCEEEEecccccc
Confidence 4678899999999999999999999999999999999999999 7778888 543332 3345777666532
Q ss_pred -----------CCHHHHHHhccCCC---ceEEEEeCCCC-CCccccc---HHHHHHHHHhcCCEEEEeCCCCCC------
Q 012321 283 -----------ADMEGLEAALNNNN---VSLFFTESPTN-PFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------ 338 (466)
Q Consensus 283 -----------~D~e~Le~ai~~~~---tklV~lesPsN-PtG~v~d---l~~I~ela~~~gillIvD~t~a~~------ 338 (466)
.|+++|+++++++. +++|++++|+| |+|.+.+ +++|.++|+++|+++|+|++|+.+
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~ 226 (456)
T 2ez2_A 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIK 226 (456)
T ss_dssp CTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccc
Confidence 37899999997641 39999999999 9999887 999999999999999999998752
Q ss_pred -----Cccch-------hccCCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHh-C------CCchHHHHHH
Q 012321 339 -----LNQKA-------LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G------GALNPNAAYL 398 (466)
Q Consensus 339 -----~~~~p-------l~~gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~-G------~~ls~~~A~l 398 (466)
+...+ .....|+++.|++|+++ .+ ++|++++ +++++++++..+... | .......+ +
T Consensus 227 ~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~ 302 (456)
T 2ez2_A 227 EQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEA-M 302 (456)
T ss_dssp HHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH-H
T ss_pred ccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHH-H
Confidence 21121 12346888889888765 43 4799998 688888887655432 1 11112222 1
Q ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHHcC
Q 012321 399 IIRGMKTL-HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 399 ~lrgL~tl-~~R~e~~~~na~~La~~L~~~ 427 (466)
++..++.+ ...+++..++.+.+.+.|++.
T Consensus 303 a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (456)
T 2ez2_A 303 AIGLREAMQYEYIEHRVKQVRYLGDKLKAA 332 (456)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 22222333 355666677788888888763
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=177.79 Aligned_cols=218 Identities=16% Similarity=0.120 Sum_probs=155.8
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---------cCC-CEEEEcCCCccchHHHHHhhcc-----
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP----- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all---------~pG-D~VLv~~~~y~~t~~~~~~~l~----- 271 (466)
+.++...+|+++|++++|.+.+++++||++|+..++..+. .+| |+||+.++.|++..........
T Consensus 115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 4577899999999999998888999999999999988764 357 8999999999774322211111
Q ss_pred ----cCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012321 272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN--- 340 (466)
Q Consensus 272 ----~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~----dl~~I~ela~~~gillIvD~t~a~~~~--- 340 (466)
....++..++..|+++|+++++..++++|++|..+|++|.+. ++++|.++|++||++||+||++.....
T Consensus 195 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~ 274 (439)
T 2oat_A 195 DGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR 274 (439)
T ss_dssp TTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred cCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc
Confidence 111355667777999999999533589999877777889876 799999999999999999999843111
Q ss_pred ---cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012321 341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS 415 (466)
Q Consensus 341 ---~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~ 415 (466)
........|++ |++|.+++ |...+|++++++++++.++..........++..+..++..++.+. ...++..+
T Consensus 275 ~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 351 (439)
T 2oat_A 275 WLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK 351 (439)
T ss_dssp SSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 12222346876 88999997 323579999999888766542211222345666665555555543 34567778
Q ss_pred HHHHHHHHHHcC
Q 012321 416 TALRMAKILEAH 427 (466)
Q Consensus 416 na~~La~~L~~~ 427 (466)
+.+++.+.|++.
T Consensus 352 ~~~~l~~~L~~l 363 (439)
T 2oat_A 352 LGIILRNELMKL 363 (439)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHh
Confidence 888888888774
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=182.30 Aligned_cols=205 Identities=12% Similarity=0.122 Sum_probs=142.6
Q ss_pred HHHHHHHHhhhC-------CCcEEEeCCHH-HHHHHHHHHhccCCC----EEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 213 VVVEEKMSALEG-------AESTVIMASGM-SASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 213 ~~Lee~lA~l~g-------~e~~v~~~SG~-aAi~~al~all~pGD----~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
..|++.++++++ .++.+++++|+ +++.+++.+++++|| +|++++|+|......+ +..|+++..+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~ 146 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKW 146 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEe
Confidence 788888888876 23466666666 999999999999999 9999999999866544 3345444433
Q ss_pred CCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchh--ccCCcEEEeccccc
Q 012321 281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSATKF 358 (466)
Q Consensus 281 d~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl--~~gaDivv~S~sK~ 358 (466)
+. |.+.++ .+ ++++|++++|+||||.+++ +|++.++.+++++|+|++|..+. ..++ ..+.+|++.|+||.
T Consensus 147 ~~-d~~~l~---~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 147 EG-DAWGFD---KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EE-ESTTCC---CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHH
T ss_pred cC-CHHHcC---CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-CCccccCCCCeEEEEechhh
Confidence 32 122222 23 5899999999999999986 55543233349999999987421 1122 34678999999999
Q ss_pred cccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH--------------HHHHHHHHHHHHHHHHHHH
Q 012321 359 IGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--------------TLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 359 lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~--------------tl~~R~e~~~~na~~La~~ 423 (466)
++.+|. +.|++++ +++++++++..+.....+.+.+.++.+...++ .+....+...++++.+.+.
T Consensus 219 ~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (391)
T 3bwn_A 219 TGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREV 297 (391)
T ss_dssp HSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 998874 4688886 88999999887764444445554444433333 3445566677888999999
Q ss_pred HHcCCCc
Q 012321 424 LEAHPKV 430 (466)
Q Consensus 424 L~~~p~V 430 (466)
|+++|.+
T Consensus 298 L~~~~~~ 304 (391)
T 3bwn_A 298 VKESDAF 304 (391)
T ss_dssp HHTCSSE
T ss_pred HHhCCCc
Confidence 9998754
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-19 Score=184.32 Aligned_cols=210 Identities=14% Similarity=0.151 Sum_probs=153.6
Q ss_pred hHHHHHHHHHhhhCCCc-EEEeCCHH-HHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 211 TTVVVEEKMSALEGAES-TVIMASGM-SASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~-~v~~~SG~-aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
..+++++++++++|.+. ++++++|+ .++.+++.++.. +|++||++++.|.+.... ++..|+++..++.
T Consensus 134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~----~~~~G~~~~~v~~~~~~ 209 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKA----VSFVGMNMRLVETVLDG 209 (456)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH----HHHTTCEEEEECCEEET
T ss_pred HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHH----HHHcCCCceEEEEeccC
Confidence 45678999999999864 56666777 566656665543 778899999999885533 3446888776653
Q ss_pred ----CCHHHHHHhc-cC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchh---cc--CC
Q 012321 283 ----ADMEGLEAAL-NN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL--GA 348 (466)
Q Consensus 283 ----~D~e~Le~ai-~~---~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl---~~--ga 348 (466)
.|+++|+++| ++ .++.+|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... ..+. .+ ++
T Consensus 210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~ 289 (456)
T 2z67_A 210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV 289 (456)
T ss_dssp TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence 4899999999 52 2588899999999999999999999999999999999999876543 2121 12 79
Q ss_pred cEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCC--chHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA--LNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~--ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~ 423 (466)
|+++.|+||+++++. .+|+++. ++++++++... ..|.. ......|.++. +.+.+..+.++..++++++.+.
T Consensus 290 D~~~~s~hK~~~~p~--g~G~l~~~~~~~~~~l~~~--~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~ 365 (456)
T 2z67_A 290 DAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 365 (456)
T ss_dssp SEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCCC--CeEEEEEcCHHHHhhcCcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999977664 3688888 57787776322 22321 22334444443 3355677788888999999999
Q ss_pred HHcCC
Q 012321 424 LEAHP 428 (466)
Q Consensus 424 L~~~p 428 (466)
|++.|
T Consensus 366 L~~~~ 370 (456)
T 2z67_A 366 LNDLS 370 (456)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 98874
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=183.77 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=152.4
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc------C-CCEEEEcCCCccchHH-HHHhhcccC----C
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKTRI-FIETVLPKM----G 274 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~------p-GD~VLv~~~~y~~t~~-~~~~~l~~~----g 274 (466)
+.++..++|++++++++|.++++++++|++|+.+++.++.. + +|+|++.++.|++... .+.. .... +
T Consensus 79 ~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-~g~~~~~~~ 157 (397)
T 2ord_A 79 FWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA-TGQPKYQKP 157 (397)
T ss_dssp SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH-SBCHHHHGG
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc-cCChhhccc
Confidence 45788999999999999988889999999999999988763 5 4789999999976433 2221 1110 0
Q ss_pred -----cEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc-c---ccHHHHHHHHHhcCCEEEEeCCCCCCCc-cch-
Q 012321 275 -----ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-C---VDVKLVSDLCHKKGAIVCIDGTFATPLN-QKA- 343 (466)
Q Consensus 275 -----i~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~-v---~dl~~I~ela~~~gillIvD~t~a~~~~-~~p- 343 (466)
..+..++..|+++|++++++ ++++|++++|+||||. + .++++|.++|+++|+++|+|++|..... ..+
T Consensus 158 ~~p~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 236 (397)
T 2ord_A 158 FEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF 236 (397)
T ss_dssp GCSCCTTEEEECTTCHHHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCCCCCCeeEecCCCHHHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccch
Confidence 11566777799999999986 4999999999999999 4 4689999999999999999999863211 111
Q ss_pred --hccC--CcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHH
Q 012321 344 --LSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTA 417 (466)
Q Consensus 344 --l~~g--aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na 417 (466)
..++ .|++ |++|++++ | .+.|+++++++++ .++..........++..++.+...++.+. ...++..+++
T Consensus 237 ~~~~~~~~~d~~--s~sK~~~~-G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 311 (397)
T 2ord_A 237 AYQKYGVVPDVL--TTAKGLGG-G-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKG 311 (397)
T ss_dssp HHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred hhhhhCCCCCee--eeccccCC-C-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1223 6866 77899994 3 3568888887776 55432222223446666666665665543 3456677778
Q ss_pred HHHHHHHHcC
Q 012321 418 LRMAKILEAH 427 (466)
Q Consensus 418 ~~La~~L~~~ 427 (466)
+.+.+.|++.
T Consensus 312 ~~l~~~L~~~ 321 (397)
T 2ord_A 312 NYLMKKLQEM 321 (397)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=174.78 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC--cEEEEeC-----
Q 012321 210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVID----- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~g--i~v~~vd----- 281 (466)
...+++++++++++|.++.+++ +||++|+.+++. ++.+||+||+.++.|.+.. +...+...| .++.+++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g 111 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTE 111 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccc
Confidence 5678889999999998766655 688899998874 4579999999999987743 112233333 3444442
Q ss_pred ---------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCc
Q 012321 282 ---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349 (466)
Q Consensus 282 ---------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaD 349 (466)
..|++++++++++.++++|++.+++|++|.+.| +++|.++|+++|+++|+|++++.........+|+|
T Consensus 112 ~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d 191 (379)
T 3ke3_A 112 DTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGID 191 (379)
T ss_dssp CCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCS
T ss_pred cccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCC
Confidence 368999999995424899999999999999999 99999999999999999999873233444556899
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHHH-----------------HHhC-----CCchHHHHHHHHHhhHH--
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----------------HVLG-----GALNPNAAYLIIRGMKT-- 405 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-----------------~~~G-----~~ls~~~A~l~lrgL~t-- 405 (466)
+++.|++|+++++. .+|++++++++++++.... ...| .+.+....+.+...++.
T Consensus 192 ~~~~s~~K~l~~~~--g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~ 269 (379)
T 3ke3_A 192 VLISAPQKGWSSTP--CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK 269 (379)
T ss_dssp EEEECTTTTTCSCC--CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred EEEecchhhcCCCC--ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998875 3689999999888775310 0011 13344333333233332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Q 012321 406 ---LHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 406 ---l~~R~e~~~~na~~La~~L~~~ 427 (466)
++.+.++..++++++.+.|++.
T Consensus 270 ~~g~~~~~~~~~~l~~~l~~~l~~~ 294 (379)
T 3ke3_A 270 EIGFDILRDAQWELGNRVRKVLTDK 294 (379)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455667778888888888876
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=177.69 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=147.6
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---------cCC-CEEEEcCCCccchHHHHHhhcc-----
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP----- 271 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all---------~pG-D~VLv~~~~y~~t~~~~~~~l~----- 271 (466)
+.++...+|+++|+++.|.+.+++++||++|+..++..+. .+| |+||+.++.|++..........
T Consensus 104 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 104 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 4678899999999999998889999999999999988753 367 9999999999874321111111
Q ss_pred ----cCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012321 272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN--- 340 (466)
Q Consensus 272 ----~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~----dl~~I~ela~~~gillIvD~t~a~~~~--- 340 (466)
....++..++..|+++|+++++..++++|++|..+|++|.+. ++++|.++|+++|++||+||++.....
T Consensus 184 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~ 263 (433)
T 1z7d_A 184 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 263 (433)
T ss_dssp --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred ccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc
Confidence 011345566667999999999433589999887777889876 799999999999999999999863211
Q ss_pred ---cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012321 341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS 415 (466)
Q Consensus 341 ---~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~ 415 (466)
........|++ |++|.+++ |...+|++++++++++.++..........++..+..++..++.+. ...++..+
T Consensus 264 ~~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 340 (433)
T 1z7d_A 264 LLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK 340 (433)
T ss_dssp SSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhhHhcCCCCCEE--EECccccC-CCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12222346776 78899995 323579999999888766532111122345666665555555543 24556667
Q ss_pred HHHHHHHHHHc
Q 012321 416 TALRMAKILEA 426 (466)
Q Consensus 416 na~~La~~L~~ 426 (466)
+.+++.+.|++
T Consensus 341 ~~~~l~~~L~~ 351 (433)
T 1z7d_A 341 LGGPFLENLKR 351 (433)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-18 Score=171.89 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=143.8
Q ss_pred HHHHHHHHHhhhC-------C-C--cEEEeCCHHHHHHHHH--HHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 212 TVVVEEKMSALEG-------A-E--STVIMASGMSASTVML--LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 212 ~~~Lee~lA~l~g-------~-e--~~v~~~SG~aAi~~al--~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
...+++.++++++ . + +.+++++|++|+..++ .+++++||+|+++.|+|.+.... ++..|.++..
T Consensus 72 ~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~ 147 (397)
T 3fsl_A 72 LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI----FAGAGFEVST 147 (397)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHH----HHHTTCCEEE
T ss_pred hHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH----HHHcCCceEE
Confidence 4456666666542 2 3 3455555569999884 56689999999999999986543 3446777777
Q ss_pred eCC----C---CHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----c
Q 012321 280 IDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K 342 (466)
Q Consensus 280 vd~----~---D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~ 342 (466)
++. . |+++|++++++ .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...... .
T Consensus 148 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 227 (397)
T 3fsl_A 148 YPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAY 227 (397)
T ss_dssp ECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGH
T ss_pred EeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccH
Confidence 764 2 79999999973 24899999999999999975 558999999999999999998765432 1
Q ss_pred hh-----ccCCcEEEeccccccccccCceEEEEEe---ChHHHHHHHHH-HH---HhCCCchHHHHHH---HHHh-----
Q 012321 343 AL-----SLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNL-HH---VLGGALNPNAAYL---IIRG----- 402 (466)
Q Consensus 343 pl-----~~gaDivv~S~sK~lgG~gdv~gG~vvg---~~eli~~l~~~-~~---~~G~~ls~~~A~l---~lrg----- 402 (466)
++ ..+.++++.|+||.++.+|. +.|++++ ++++++++... .. ......+...+.. ++..
T Consensus 228 ~~~~~~~~~~~~i~~~S~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 306 (397)
T 3fsl_A 228 AIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKA 306 (397)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHhcCCCEEEEecccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHH
Confidence 11 23456999999999987764 4677753 56666554322 11 1111222222222 1221
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 403 --MKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 403 --L~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
.+.+..+.+++.++++.+.+.|++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 334 (397)
T 3fsl_A 307 SWLKEVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456667778888999999998764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=178.12 Aligned_cols=212 Identities=16% Similarity=0.163 Sum_probs=144.6
Q ss_pred hhHHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEe--C---C
Q 012321 210 PTTVVVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI--D---P 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~-v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~-~l~~~gi~v~~v--d---~ 282 (466)
+..+.+++++++++|.+.. +++++|++|+..++.+++++||+|++..+.|++....... .+...++....+ + .
T Consensus 76 ~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 155 (420)
T 3gbx_A 76 VVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGK 155 (420)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCC
Confidence 3344556899999998654 5589999999999999999999999999999873311111 111112222222 2 2
Q ss_pred CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCCcEEEecccc
Q 012321 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~gaDivv~S~sK 357 (466)
.|+++|+++++++++++|++++|+||+ +.|+++|.++|+++|+++|+|+++..+.. ..... ..|+++.|+||
T Consensus 156 ~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK 232 (420)
T 3gbx_A 156 IDYDEMAKLAKEHKPKMIIGGFSAYSG--VVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHK 232 (420)
T ss_dssp CCHHHHHHHHHHHCCSEEEECCTTCCS--CCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSG
T ss_pred cCHHHHHHHHHhcCCeEEEEecCccCC--ccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeeccc
Confidence 689999999976458999999999864 78999999999999999999999754322 22222 37999999999
Q ss_pred ccccccCceEEEEEeCh---HHHHHHHHHHHH--hCCCchHHH--HHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 358 FIGGHNDVLAGSISGSG---KLVTQIRNLHHV--LGGALNPNA--AYLII-RG-MKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~---eli~~l~~~~~~--~G~~ls~~~--A~l~l-rg-L~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+++|+. ||++++++ ++.+.++..... .+....+.. +..++ .. .+.+..+.++..++++.+.+.|++.
T Consensus 233 ~~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 308 (420)
T 3gbx_A 233 TLAGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR 308 (420)
T ss_dssp GGCSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 998653 69999987 777777654332 222222221 12222 22 2456677888889999999999873
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=181.81 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=150.0
Q ss_pred HHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEeC------CCCHHHH
Q 012321 217 EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID------PADMEGL 288 (466)
Q Consensus 217 e~lA~l~g~e~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~-~l~~~gi~v~~vd------~~D~e~L 288 (466)
+++++++|.+...+ ++||++|+..++.+++++||+|++.++.|++....... .+...+..+..++ ..|+++|
T Consensus 98 ~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l 177 (447)
T 3h7f_A 98 DRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAV 177 (447)
T ss_dssp HHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHH
T ss_pred HHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHH
Confidence 99999999987777 89999999999999999999999999998772211000 0111123333332 2589999
Q ss_pred HHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-----CccchhccCCcEEEecccccccccc
Q 012321 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLVLHSATKFIGGHN 363 (466)
Q Consensus 289 e~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~-----~~~~pl~~gaDivv~S~sK~lgG~g 363 (466)
++++++.++++|++++|+||++. |+++|.++|+++|++||+|+++..+ ....++ .++|+++.|++|+++|+
T Consensus 178 ~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~- 253 (447)
T 3h7f_A 178 RATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGG- 253 (447)
T ss_dssp HHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCC-
T ss_pred HHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCC-
Confidence 99986434899999999998876 9999999999999999999997543 222333 35799999999999875
Q ss_pred CceEEEEEeChHHHHHHHHHHHH--hCCCchHHH--HHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 364 DVLAGSISGSGKLVTQIRNLHHV--LGGALNPNA--AYLIIRG-M-KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 364 dv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~--A~l~lrg-L-~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++|++++++++++.++..... .|+...+.. +..++.. + +.+..+.++..++++++.+.|++.
T Consensus 254 --~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 254 --RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp --SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred --CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999998888765432 233333211 1222222 2 356778888999999999999876
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-21 Score=196.65 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=150.4
Q ss_pred HHHHHHHHHhh----hC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 212 TVVVEEKMSAL----EG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 212 ~~~Lee~lA~l----~g----~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...+++.++++ +| .++.+++++|++|+.+++.+++++||+|++..+.|.+.... +...|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 143 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARS----VRLNNRKLVSNSLK 143 (392)
Confidence 45566666654 34 24455555566999999999999999999999999986543 3344555554432
Q ss_pred -------CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh----
Q 012321 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---- 344 (466)
Q Consensus 283 -------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl---- 344 (466)
.|+++|++++++.++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... .++
T Consensus 144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (392)
T 3b1d_A 144 EENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVS 223 (392)
Confidence 47888998887335899999999999999975 889999999999999999998754321 011
Q ss_pred c--cCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHHHHhC-CCchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012321 345 S--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLG-GALNPNAAYLIIRGM----KTLHLRVQQQNST 416 (466)
Q Consensus 345 ~--~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~~~~G-~~ls~~~A~l~lrgL----~tl~~R~e~~~~n 416 (466)
. .+.++++.|+||.++.+| .+.|++++++ ++++.++.....++ ...++..++.+...+ +.+....++..++
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (392)
T 3b1d_A 224 PDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEEN 302 (392)
Confidence 1 345689999999998666 3578888764 58888877665543 123444333333232 3344555666778
Q ss_pred HHHHHHHHHc-CCCcE
Q 012321 417 ALRMAKILEA-HPKVK 431 (466)
Q Consensus 417 a~~La~~L~~-~p~V~ 431 (466)
++.+.+.|++ +|.+.
T Consensus 303 ~~~l~~~l~~~~~~~~ 318 (392)
T 3b1d_A 303 IQFAVEYFAQEAPRLK 318 (392)
Confidence 8888888887 56553
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=183.76 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=109.8
Q ss_pred cEEEeCCHHHHHHHHHHH-----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---------CCHHHHHHhc
Q 012321 227 STVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---------ADMEGLEAAL 292 (466)
Q Consensus 227 ~~v~~~SG~aAi~~al~a-----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---------~D~e~Le~ai 292 (466)
+.+++++|++|+..++.+ ++++||+|+++.|+|.+.. ..+...|.++..++. .|+++|++++
T Consensus 166 ~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l 241 (533)
T 3f6t_A 166 DLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLK 241 (533)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGGSEEEEECCCEETTTTSEECHHHHHHHS
T ss_pred eEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHh
Confidence 455555556999999988 7899999999999998854 334445666666653 2799999999
Q ss_pred cCCCceEEEEeCCCCCCcccccHH---HHHHHHH-hcCCEEEEeCCCCCCCcc--ch--hccCCcEEEeccccccccccC
Q 012321 293 NNNNVSLFFTESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFATPLNQ--KA--LSLGADLVLHSATKFIGGHND 364 (466)
Q Consensus 293 ~~~~tklV~lesPsNPtG~v~dl~---~I~ela~-~~gillIvD~t~a~~~~~--~p--l~~gaDivv~S~sK~lgG~gd 364 (466)
+++ +++|++++|+||||.+++.+ +|+++|+ ++|+++|+|++|+..... .. ...+.++++.|+||.++.+|.
T Consensus 242 ~~~-~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 242 DPS-IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp CTT-EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred CCC-CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 874 99999999999999998765 7888888 689999999998753321 11 122356999999999997774
Q ss_pred ceEEEEEeChH
Q 012321 365 VLAGSISGSGK 375 (466)
Q Consensus 365 v~gG~vvg~~e 375 (466)
+.|+++++++
T Consensus 321 -RiG~l~~~~~ 330 (533)
T 3f6t_A 321 -RLGVIALNEK 330 (533)
T ss_dssp -CEEEEEEESS
T ss_pred -ceEEEEECcH
Confidence 4678887654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=174.26 Aligned_cols=213 Identities=15% Similarity=0.104 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHhhh-CC----CcEEE--eCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 210 PTTVVVEEKMSALE-GA----ESTVI--MASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 210 p~~~~Lee~lA~l~-g~----e~~v~--~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
.....|++.+++++ +. ++.++ +++|++|+.+++..+.. +||+|+++.|+|.+....+ ...|.++..+
T Consensus 69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~ 144 (394)
T 2ay1_A 69 SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTY 144 (394)
T ss_dssp SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEE
T ss_pred CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCceEEE
Confidence 33567888888875 42 45666 77777999999877754 9999999999999865443 3346666555
Q ss_pred CC-------CCHHHHHHhccCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-------
Q 012321 281 DP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------- 341 (466)
Q Consensus 281 d~-------~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~------- 341 (466)
+. .|++++++++++. +++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 145 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 224 (394)
T 2ay1_A 145 RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAG 224 (394)
T ss_dssp ECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHH
T ss_pred ecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHH
Confidence 43 2799999998753 3678888999999999986 568899999999999999998764331
Q ss_pred -chh-ccC-CcEEEeccccccccccCceEEEEEe---ChHHHHHHHH----HHHHhCCCchHHHHHHHHHhh--------
Q 012321 342 -KAL-SLG-ADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRN----LHHVLGGALNPNAAYLIIRGM-------- 403 (466)
Q Consensus 342 -~pl-~~g-aDivv~S~sK~lgG~gdv~gG~vvg---~~eli~~l~~----~~~~~G~~ls~~~A~l~lrgL-------- 403 (466)
..+ ..+ .++++.|+||+++.+| .+.|++++ ++++++.+.. .........++..++.+...+
T Consensus 225 ~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~ 303 (394)
T 2ay1_A 225 TRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRAD 303 (394)
T ss_dssp HHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHH
T ss_pred HHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHH
Confidence 111 123 3478999999998666 35688877 6766544332 222211222333333332222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 404 --KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 404 --~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
+.+....+++.++++.+.+.|+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (394)
T 2ay1_A 304 WMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234455566677788888888765
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=175.27 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHhh--hC-C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE-EEEeCCC
Q 012321 210 PTTVVVEEKMSAL--EG-A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPA 283 (466)
Q Consensus 210 p~~~~Lee~lA~l--~g-~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~-v~~vd~~ 283 (466)
+....|++.++++ .| . ++.++++++++++..++ .++.+||+|+++.|.|.+....+ ...|.+ +..++..
T Consensus 75 ~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~ 149 (400)
T 3asa_A 75 FGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDIA----RLTGAKEIIALPCL 149 (400)
T ss_dssp TCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHHH----HHTTCSEEEEEECC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHHH----HHcCCcceEecccc
Confidence 4467899999998 56 3 45566666668888754 56689999999999999865433 345666 6665432
Q ss_pred CHHHHHHhccC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhcc----CCcE
Q 012321 284 DMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL----GADL 350 (466)
Q Consensus 284 D~e~Le~ai~~-~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~----gaDi 350 (466)
+.+.+...+++ .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... .....+ +.++
T Consensus 150 ~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (400)
T 3asa_A 150 QENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAI 229 (400)
T ss_dssp GGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEE
T ss_pred hhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceE
Confidence 11111111111 24899999999999999987 56788999999999999999874211 112222 2458
Q ss_pred EEeccccccccccCceEEEEEeChHH-------HHHHHHHHH-HhCCCchHHHHHHHHHhhHH--HHHHHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKL-------VTQIRNLHH-VLGGALNPNAAYLIIRGMKT--LHLRVQQQNSTALRM 420 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~el-------i~~l~~~~~-~~G~~ls~~~A~l~lrgL~t--l~~R~e~~~~na~~L 420 (466)
++.|+||+++.+| .+.|++++++++ ++.+..... ....+.++.....+...++. +....+++.++++.+
T Consensus 230 ~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 308 (400)
T 3asa_A 230 EINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLL 308 (400)
T ss_dssp EEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred EEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999998766 457899998887 666643222 21123344433333333332 444556677888889
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|++.
T Consensus 309 ~~~L~~~ 315 (400)
T 3asa_A 309 RKALLAT 315 (400)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9999875
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-19 Score=185.95 Aligned_cols=221 Identities=17% Similarity=0.155 Sum_probs=138.8
Q ss_pred CCccCCC--CchhHHHHH----HHHHhhhCCCc----E-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHH--HH-
Q 012321 201 SFEYGRY--GNPTTVVVE----EKMSALEGAES----T-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI--FI- 266 (466)
Q Consensus 201 ~~~Y~R~--~~p~~~~Le----e~lA~l~g~e~----~-v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~--~~- 266 (466)
+|...|+ ++++..+|| +++++++|.+. + ++++||++|+.+++.++++|||+|++.++.|++... .+
T Consensus 85 G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~ 164 (490)
T 2a7v_A 85 GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMS 164 (490)
T ss_dssp C------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC---------------
T ss_pred CCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhh
Confidence 3444443 456666777 99999999875 4 445699999999999999999999999999876421 10
Q ss_pred H-hhcccCCc--EEEEe--C----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC
Q 012321 267 E-TVLPKMGI--TATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337 (466)
Q Consensus 267 ~-~~l~~~gi--~v~~v--d----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~ 337 (466)
. ..+...|. .+..+ + ..|+++|++++.+.++++|+++.++|| .+.|+++|.++|+++|++|++|+++..
T Consensus 165 ~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp ----------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGH
T ss_pred cchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEcccccc
Confidence 0 01111232 22222 2 358999999986434899999888886 467999999999999999999999643
Q ss_pred -----CCccchhccCCcEEEeccccccccccCceEEEEEeChH---------------HHHHHHHHHHH--hCCCchH-H
Q 012321 338 -----PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHHV--LGGALNP-N 394 (466)
Q Consensus 338 -----~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e---------------li~~l~~~~~~--~G~~ls~-~ 394 (466)
+....++. ++|+++.|+||+|+|+. ||+++++++ +.++++..... .|+.... .
T Consensus 243 glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp~---GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~i 318 (490)
T 2a7v_A 243 GLVAAKVIPSPFK-HADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 318 (490)
T ss_dssp HHHHTTSSCCGGG-TCSEEEEESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHH
T ss_pred ccccCCcCCCCCC-CCCEEEECCcccCcccc---chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHH
Confidence 22334554 69999999999998773 799988763 55666654332 1222222 2
Q ss_pred HHHH-HHH-hh-HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 395 AAYL-IIR-GM-KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 395 ~A~l-~lr-gL-~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+.. ++. .+ +.++.+.++..+|+++|++.|++.
T Consensus 319 aAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~ 354 (490)
T 2a7v_A 319 AAVAVALKQACTPMFREYSLQVLKNARAMADALLER 354 (490)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 2211 222 22 345677888999999999999986
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=189.92 Aligned_cols=218 Identities=12% Similarity=0.038 Sum_probs=158.6
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.++...++|+.+|+++|.+.++++++|+ +|+.+++.+++++||+||++.++|.+.+.. .+...|+++.+++.
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~ 247 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNP 247 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECT
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccc
Confidence 4567899999999999999999999998 899999999999999999999999886643 14456777766542
Q ss_pred ------CCHHHH-----HHhccCCC-----c----eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-
Q 012321 283 ------ADMEGL-----EAALNNNN-----V----SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ- 341 (466)
Q Consensus 283 ------~D~e~L-----e~ai~~~~-----t----klV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~- 341 (466)
.|+++| ++++++++ + ++|++++| |++|.+.|+++|+++|+++|++|++|++|+..+..
T Consensus 248 ~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~ 326 (730)
T 1c4k_A 248 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI 326 (730)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred cCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence 266777 88887631 4 89999999 58999999999999999999999999998753211
Q ss_pred ------chhcc---CCc----EEEeccccccccccCceEEEEEeChHH---------HHHHHHHHHHhC-CCchHHHHH-
Q 012321 342 ------KALSL---GAD----LVLHSATKFIGGHNDVLAGSISGSGKL---------VTQIRNLHHVLG-GALNPNAAY- 397 (466)
Q Consensus 342 ------~pl~~---gaD----ivv~S~sK~lgG~gdv~gG~vvg~~el---------i~~l~~~~~~~G-~~ls~~~A~- 397 (466)
.++.. |+| +++.|+||+++|+. .+|+++.+++. ..+++.....+. +..+.....
T Consensus 327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaa 404 (730)
T 1c4k_A 327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 404 (730)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred cccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHH
Confidence 23433 788 99999999999875 46777543322 123333332232 222222111
Q ss_pred --HHHHhhH--HHHHHHHHHHHHHHHHHHHHHc-CCCcE
Q 012321 398 --LIIRGMK--TLHLRVQQQNSTALRMAKILEA-HPKVK 431 (466)
Q Consensus 398 --l~lrgL~--tl~~R~e~~~~na~~La~~L~~-~p~V~ 431 (466)
.+.+.++ ....++++..++++.+.+.|++ .++++
T Consensus 405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~ 443 (730)
T 1c4k_A 405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR 443 (730)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence 1122222 2455778888999999999998 67764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-18 Score=179.37 Aligned_cols=221 Identities=14% Similarity=0.143 Sum_probs=155.3
Q ss_pred chhHHHHH----HHHHhhhCCCc-----------EEEeCCHHHHHHHHHHHhccC---------CC--------E--EEE
Q 012321 209 NPTTVVVE----EKMSALEGAES-----------TVIMASGMSASTVMLLALVPA---------GG--------H--IVT 254 (466)
Q Consensus 209 ~p~~~~Le----e~lA~l~g~e~-----------~v~~~SG~aAi~~al~all~p---------GD--------~--VLv 254 (466)
.|....+| +++++++|.+. .+++++|++|+..++.++..+ || + |++
T Consensus 108 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~ 187 (486)
T 1js3_A 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (486)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred ChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEE
Confidence 35555554 45677778652 688889999998888765321 43 3 778
Q ss_pred cCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCc------eEEEEeCCCCCCcccccHHHHHHHHH
Q 012321 255 TTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNV------SLFFTESPTNPFLRCVDVKLVSDLCH 323 (466)
Q Consensus 255 ~~~~y~~t~~~~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~t------klV~lesPsNPtG~v~dl~~I~ela~ 323 (466)
+.+.|.+.... +...|++++.++. .|+++|+++|+++ + .+|++++|+||+|.+.|+++|+++|+
T Consensus 188 s~~~h~s~~~~----~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~-~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~ 262 (486)
T 1js3_A 188 SDQAHSSVERA----GLIGGVKLKAIPSDGKFAMRASALQEALERD-KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262 (486)
T ss_dssp ETTCCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHH-HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred CCCCcHHHHHH----HHhCCCceEEeecCCCCCCCHHHHHHHHHHH-HhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 99999875543 3345788877764 4899999999764 5 38999999999999999999999999
Q ss_pred hcCCEEEEeCCCCCCCccch-h------ccCCcEEEeccccccccccCceEEEEEeC-hHH-HHHHHH---HHHH-----
Q 012321 324 KKGAIVCIDGTFATPLNQKA-L------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKL-VTQIRN---LHHV----- 386 (466)
Q Consensus 324 ~~gillIvD~t~a~~~~~~p-l------~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~el-i~~l~~---~~~~----- 386 (466)
++|+++++|++|+.+....+ . -.++|+++.++||+++++. ..|+++.+ +++ .+.+.. +...
T Consensus 263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~--~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 340 (486)
T 1js3_A 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (486)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc--ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence 99999999999986543211 1 1268999999999999764 35777665 443 333311 1100
Q ss_pred ------------hCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCC
Q 012321 387 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 436 (466)
Q Consensus 387 ------------~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~P 436 (466)
.+........|.+++ +.+.+..++++..++++++.+.|++.|+++.+..|
T Consensus 341 ~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 404 (486)
T 1js3_A 341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV 404 (486)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC
T ss_pred cCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC
Confidence 111223455555544 55678888899999999999999999887654333
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-18 Score=171.73 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=140.4
Q ss_pred HHHHHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHH-HHHhhcccCCcEEEEeC------CC
Q 012321 212 TVVVEEKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI-FIETVLPKMGITATVID------PA 283 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e~~v-~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~-~~~~~l~~~gi~v~~vd------~~ 283 (466)
.+..++++++++|.+... ++++|++|+..++.+++++||+|++..+.|++... .........++....++ ..
T Consensus 80 ~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (425)
T 3ecd_A 80 EALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLI 159 (425)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSC
T ss_pred HHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCcc
Confidence 333458889999987764 48999999999999999999999999999987321 11111122233444444 23
Q ss_pred CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-----ccchhccCCcEEEeccccc
Q 012321 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKF 358 (466)
Q Consensus 284 D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-----~~~pl~~gaDivv~S~sK~ 358 (466)
|+++|++++++.++++|++++|+|| ...++++|.++|+++|+++|+|+++..+. ...++. .+|+++.|+||+
T Consensus 160 d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~ 236 (425)
T 3ecd_A 160 DYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKT 236 (425)
T ss_dssp CHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGG
T ss_pred CHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcc
Confidence 8999999997434899999999985 57899999999999999999999954322 122333 379999999999
Q ss_pred cccccCceEEEEEeC-hHHHHHHHHHHHHh--CCCchHHHH--HHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 359 IGGHNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAA--YLII-RG-MKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 359 lgG~gdv~gG~vvg~-~eli~~l~~~~~~~--G~~ls~~~A--~l~l-rg-L~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++|+ ++|+++++ +++.+.++...... +....+..+ ..++ .. .+.+....++..++++.+.+.|++.
T Consensus 237 l~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (425)
T 3ecd_A 237 LRGP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309 (425)
T ss_dssp GCCC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9765 37999887 56777666543321 122222222 2222 22 2455677788888999999999874
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=176.89 Aligned_cols=212 Identities=16% Similarity=0.165 Sum_probs=148.1
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc----CCCE---EEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----AGGH---IVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~----pGD~---VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
..+...+|+++++++++.++++++++|++|+.+++.+++. +||+ |+++.+.|+.+...+ ...|.++..+
T Consensus 74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~ 149 (467)
T 1ax4_A 74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINI 149 (467)
T ss_dssp SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEEC
T ss_pred cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHH----hccCCceecc
Confidence 3567889999999999999899999999999999999988 9999 998855445434333 2234444332
Q ss_pred C---------------CCCHHHHHHhccC---CCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC-
Q 012321 281 D---------------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT- 337 (466)
Q Consensus 281 d---------------~~D~e~Le~ai~~---~~tklV~lesPsNPt-G~v~d---l~~I~ela~~~gillIvD~t~a~- 337 (466)
+ ..|+++|++++++ .++++|++++|+||+ |.+.+ +++|.++|++||++||+|+++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~ 229 (467)
T 1ax4_A 150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE 229 (467)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence 1 2489999999974 148999999999999 78765 67999999999999999998542
Q ss_pred ----------CCc-cchhc------cCCcEEEeccccccccccCceEEEEEeC-h-HHHHHHHHHHHHhCC-----CchH
Q 012321 338 ----------PLN-QKALS------LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLVTQIRNLHHVLGG-----ALNP 393 (466)
Q Consensus 338 ----------~~~-~~pl~------~gaDivv~S~sK~lgG~gdv~gG~vvg~-~-eli~~l~~~~~~~G~-----~ls~ 393 (466)
... ..... ..+|+++.|+||+++.+ +||+++++ + +++++++.....+++ ..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence 111 11111 24789999999999865 46888887 7 888887765543221 1122
Q ss_pred HHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012321 394 NAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 394 ~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~ 426 (466)
.....+..+++.+ ..++++..++++.+.+.|++
T Consensus 307 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 307 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1111111123322 22555666788889999987
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-18 Score=178.78 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=155.7
Q ss_pred HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc-------c-CCC------EEEEcCCCccchHHHHHhhcccCCc
Q 012321 212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-------P-AGG------HIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all-------~-pGD------~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
..++++++++++|.+ ..+++++|++|+..++.++. + +|| +|+++...|.+....+.. +. .|.
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~-~g-~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF-LG-LGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-SCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHH-cC-CCC
Confidence 456677899999974 67778888899888887763 2 576 899999999887654432 21 132
Q ss_pred -EEEEeCC-----CCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch-
Q 012321 276 -TATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA- 343 (466)
Q Consensus 276 -~v~~vd~-----~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p- 343 (466)
++..++. .|+++|+++|++. ++++|++++|+|++|.+.|+++|.++|+++|+++|+|++|+.+....+
T Consensus 228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~ 307 (515)
T 2jis_A 228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQT 307 (515)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTT
T ss_pred CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChh
Confidence 6666654 3899999998651 389999999999999999999999999999999999999886544322
Q ss_pred ----hc--cCCcEEEeccccccccccCceEEEEEeChH--HHHHHH----HHHHH-----------------hCCCchHH
Q 012321 344 ----LS--LGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIR----NLHHV-----------------LGGALNPN 394 (466)
Q Consensus 344 ----l~--~gaDivv~S~sK~lgG~gdv~gG~vvg~~e--li~~l~----~~~~~-----------------~G~~ls~~ 394 (466)
+. .++|+++.|+||+++++.+ .|+++.+++ ++++.. .+... .+.....+
T Consensus 308 ~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al 385 (515)
T 2jis_A 308 HRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCL 385 (515)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHH
T ss_pred hHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHH
Confidence 22 2689999999999987753 477776654 655421 11100 00112244
Q ss_pred HHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 395 AAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 395 ~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
..|.+++ +.+.+...+++..++++++.+.|++.|+++.+
T Consensus 386 ~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 426 (515)
T 2jis_A 386 KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELV 426 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 5555444 33456677888899999999999998876543
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=179.49 Aligned_cols=217 Identities=13% Similarity=0.120 Sum_probs=155.4
Q ss_pred HHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc--------CC-----C-EEEEcCCCccchHHHHHhhcccCC
Q 012321 213 VVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 213 ~~Lee~lA~l~g~e----~~v~~~SG~aAi~~al~all~--------pG-----D-~VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
+++.+++++++|.+ ..+++++|++|+..++.++.. +| + +|+++.+.|.+....+.. +. .|
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~-~g-~g 212 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA-LG-FG 212 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-SC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHH-cC-CC
Confidence 34446668888864 567778888999998887742 57 6 799999999886654432 21 23
Q ss_pred c-EEEEeCCC-----CHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--
Q 012321 275 I-TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (466)
Q Consensus 275 i-~v~~vd~~-----D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~-- 341 (466)
. ++..++.. |+++|+++|++. ++++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+...
T Consensus 213 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~ 292 (504)
T 2okj_A 213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSR 292 (504)
T ss_dssp GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCT
T ss_pred cccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCH
Confidence 3 66666543 899999998651 3899999999999999999999999999999999999998765432
Q ss_pred ---chhc--cCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHH-HHHh-CC-------------------CchHH
Q 012321 342 ---KALS--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNL-HHVL-GG-------------------ALNPN 394 (466)
Q Consensus 342 ---~pl~--~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~-~~~~-G~-------------------~ls~~ 394 (466)
..+. .++|+++.++||+++++. ..|+++.++ ++++..... ...+ +. .....
T Consensus 293 ~~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l 370 (504)
T 2okj_A 293 KHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIF 370 (504)
T ss_dssp TTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHH
T ss_pred hhHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHH
Confidence 1222 268999999999999775 357777665 565542211 1111 10 11245
Q ss_pred HHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 395 AAYLIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 395 ~A~l~lrg--L~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
..|.+++. .+.+..++++..++++++.+.|+++|+++.+
T Consensus 371 ~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 411 (504)
T 2okj_A 371 KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMV 411 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEES
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 55555443 3556777888999999999999998877543
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-18 Score=178.35 Aligned_cols=211 Identities=16% Similarity=0.118 Sum_probs=148.4
Q ss_pred HHHHHHHhhhCCC-----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh----hcccCC--cEEEEe--
Q 012321 214 VVEEKMSALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET----VLPKMG--ITATVI-- 280 (466)
Q Consensus 214 ~Lee~lA~l~g~e-----~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~----~l~~~g--i~v~~v-- 280 (466)
.+++++++++|.+ ..|+++||++|+.+++.++++|||+|++.++.|++....... .....| +....+
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 4448999999985 348999999999888999999999999999999875421100 011112 333333
Q ss_pred C----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-----CccchhccCCcEE
Q 012321 281 D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLV 351 (466)
Q Consensus 281 d----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~-----~~~~pl~~gaDiv 351 (466)
+ ..|+++|++++++.+||+|++ +++|++ .+.|+++|.++|+++|++||+|+++..+ ....++. ++|++
T Consensus 174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div 250 (483)
T 1rv3_A 174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVV 250 (483)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEE
T ss_pred ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEE
Confidence 3 258999999998335999999 999999 8999999999999999999999997643 2223333 68999
Q ss_pred EeccccccccccCceEEEEEeChH---------------HHHHHHHHHHH--hCCCchH-HHHH-HHHHhh--HHHHHHH
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHHV--LGGALNP-NAAY-LIIRGM--KTLHLRV 410 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~e---------------li~~l~~~~~~--~G~~ls~-~~A~-l~lrgL--~tl~~R~ 410 (466)
+.|+||+|+|+. +|+++++++ +.+++...... .|+.... ..+. .++..+ ..++.+.
T Consensus 251 ~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~ 327 (483)
T 1rv3_A 251 TTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQ 327 (483)
T ss_dssp EEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred EecCcccCCCCC---ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHH
Confidence 999999998763 699988764 33444332111 2222222 2221 122222 3567778
Q ss_pred HHHHHHHHHHHHHHHcCCCcE
Q 012321 411 QQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 411 e~~~~na~~La~~L~~~p~V~ 431 (466)
++..++++.+++.|+++ ++.
T Consensus 328 ~~~~~~~~~l~~~L~~~-g~~ 347 (483)
T 1rv3_A 328 RQVVANCRALSAALVEL-GYK 347 (483)
T ss_dssp HHHHHHHHHHHHHHHHT-TCE
T ss_pred HHHHHHHHHHHHHHHhc-CCE
Confidence 88899999999999987 443
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-18 Score=173.79 Aligned_cols=226 Identities=13% Similarity=0.074 Sum_probs=153.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhh--CC-CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhccc---
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALE--GA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPK--- 272 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~--g~-e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~--- 272 (466)
.|.+.++.++...+|+++|++++ +. ++++++++|++|+..++..+ ..++++||+.++.|++...........
T Consensus 77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 156 (439)
T 3dxv_A 77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ 156 (439)
T ss_dssp CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence 35567778899999999999998 44 57888899999999999875 346788999898887644322111100
Q ss_pred --------CCcEEEEeCCC----------CHHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCC
Q 012321 273 --------MGITATVIDPA----------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGA 327 (466)
Q Consensus 273 --------~gi~v~~vd~~----------D~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gi 327 (466)
....+..++.. |+++|+++++ +.++++|+++.++|++|.+.+ +++|.++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~ 236 (439)
T 3dxv_A 157 ADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI 236 (439)
T ss_dssp -------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred hhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 00011222222 5899999983 335899999999999999988 9999999999999
Q ss_pred EEEEeCCCCCCC------ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 012321 328 IVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401 (466)
Q Consensus 328 llIvD~t~a~~~------~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lr 401 (466)
+||+||+|.... .........|++ |++|.+++ |. +.|++++++++++.++........ .++..+..++.
T Consensus 237 ~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~-riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~a 311 (439)
T 3dxv_A 237 LVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GL-PLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLA 311 (439)
T ss_dssp EEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TS-CCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHH
T ss_pred EEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Cc-ceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHH
Confidence 999999986321 112222345666 88999996 54 679999999988876644222223 45665555555
Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHc----CCCcE
Q 012321 402 GMKTL--HLRVQQQNSTALRMAKILEA----HPKVK 431 (466)
Q Consensus 402 gL~tl--~~R~e~~~~na~~La~~L~~----~p~V~ 431 (466)
.++.+ +..+++..++.+++.+.|++ +|.+.
T Consensus 312 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 347 (439)
T 3dxv_A 312 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIG 347 (439)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 55433 22355556666666555544 56544
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=171.95 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=149.4
Q ss_pred CchhHHHHH----HHHHhhhCCCcEE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC--cEEEEe
Q 012321 208 GNPTTVVVE----EKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI 280 (466)
Q Consensus 208 ~~p~~~~Le----e~lA~l~g~e~~v-~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~g--i~v~~v 280 (466)
+++....++ +++++++|.+... ++++|++|+.+++.+++++||+|+++.+.|+.+..... .+...| +++..+
T Consensus 63 ~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 141 (405)
T 2vi8_A 63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-PVNFSGVQYNFVAY 141 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-TTSHHHHHSEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-hhhhccceeEEEec
Confidence 345556665 6999999987654 46899999999999999999999999999987532100 001112 244444
Q ss_pred C------CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---cchhc-cCCcE
Q 012321 281 D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKALS-LGADL 350 (466)
Q Consensus 281 d------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~---~~pl~-~gaDi 350 (466)
+ ..|+++|++++++.++++|++ +|+|. |...|+++|.++|+++|+++|+|++|+.+.. ..+.. .+.|+
T Consensus 142 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di 219 (405)
T 2vi8_A 142 GVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHF 219 (405)
T ss_dssp CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSE
T ss_pred ccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCE
Confidence 3 248999999997523889888 56554 5677899999999999999999999874211 11111 15799
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC-CCchHH--HH-HHHHHhh--HHHHHHHHHHHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPN--AA-YLIIRGM--KTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G-~~ls~~--~A-~l~lrgL--~tl~~R~e~~~~na~~La~~L 424 (466)
++.|+||+++|+. ||++++++++++.++.....+. ++.++. .+ ..+++.+ +.++...++..++++.+.+.|
T Consensus 220 ~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 296 (405)
T 2vi8_A 220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL 296 (405)
T ss_dssp EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCC---CeEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 4999999999888876543222 222222 22 1223221 345667788888999999999
Q ss_pred HcC
Q 012321 425 EAH 427 (466)
Q Consensus 425 ~~~ 427 (466)
++.
T Consensus 297 ~~~ 299 (405)
T 2vi8_A 297 QNE 299 (405)
T ss_dssp HHT
T ss_pred HhC
Confidence 886
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=184.19 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=157.5
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
........+++.+++++|.+..+++++|+ +|+.+++.+++++||+|+++.++|.+.+..+ ...|+++.+++.
T Consensus 202 ~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~~~~ 277 (755)
T 2vyc_A 202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVPSRN 277 (755)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECCCBC
T ss_pred cCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeCCCC
Confidence 34567889999999999999889999997 8899999999999999999999999876543 235777777642
Q ss_pred -------C-----CHHHHHHhccCC-Cce--------EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc
Q 012321 283 -------A-----DMEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ 341 (466)
Q Consensus 283 -------~-----D~e~Le~ai~~~-~tk--------lV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~ 341 (466)
. |+++|+++++++ +++ +|++++| ||+|.+.|+++|+++|+++|+++++|++|+.....
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~ 356 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGG
T ss_pred ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhccc
Confidence 2 899999998642 244 8999998 69999999999999999999999999998754322
Q ss_pred -------chhccC--CcE------EEeccccccccccCceEEEEEeChH--HH--HHHHHHHHHhC-CCchHHHHHH---
Q 012321 342 -------KALSLG--ADL------VLHSATKFIGGHNDVLAGSISGSGK--LV--TQIRNLHHVLG-GALNPNAAYL--- 398 (466)
Q Consensus 342 -------~pl~~g--aDi------vv~S~sK~lgG~gdv~gG~vvg~~e--li--~~l~~~~~~~G-~~ls~~~A~l--- 398 (466)
.++ .| +|+ ++.|+||+++|+. .+|+++.+++ .+ .++......+. ++.+......
T Consensus 357 ~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~a 433 (755)
T 2vyc_A 357 NPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDV 433 (755)
T ss_dssp CGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHH
T ss_pred CcccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 223 56 676 9999999999875 4677766543 22 34443333332 2223221111
Q ss_pred HHHhhHH--HHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 399 IIRGMKT--LHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 399 ~lrgL~t--l~~R~e~~~~na~~La~~L~~~p~ 429 (466)
+++.++. ...++++..++++.+.+.|++.++
T Consensus 434 A~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 434 AVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp HHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1222221 356778888899999999988665
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=177.39 Aligned_cols=205 Identities=13% Similarity=0.146 Sum_probs=146.2
Q ss_pred HHHHHHHHHhhhC------C-CcEEEeCCH-HHHHHHHHHHh--------ccCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 212 TVVVEEKMSALEG------A-ESTVIMASG-MSASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 212 ~~~Lee~lA~l~g------~-e~~v~~~SG-~aAi~~al~al--------l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
...|++.|+++++ . ++.+++++| ++++.+++.++ +++||+|+++.|.|......+.. .|.
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~----~g~ 177 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY----FDK 177 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH----SCB
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH----cCC
Confidence 5778888888774 2 345555555 59999999999 89999999999999886654432 344
Q ss_pred EEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEec
Q 012321 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS 354 (466)
Q Consensus 276 ~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S 354 (466)
++... ..|+++|+++++++ +++|++++|+||||.+++ + + ++ ++..+.|+.+..+. ....+..+.+|++.|
T Consensus 178 ~~~~~-~~d~~~l~~~~~~~-~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S 248 (427)
T 2hox_A 178 KGYVW-AGNAANYVNVSNPE-QYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDILLFT 248 (427)
T ss_dssp TTEEE-EEEGGGGTTCSCGG-GEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEE
T ss_pred eeeee-cCCHHHHHHhhcCC-ceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceEEEEe
Confidence 33222 23678888888764 999999999999999999 4 2 33 56789999865321 111122467899999
Q ss_pred cccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---------------HHHHHHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------------LHLRVQQQNSTAL 418 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t---------------l~~R~e~~~~na~ 418 (466)
+||.++.+| .+.|++++ +++++++++..+.......+.+.++.+...|+. +....+++.++.+
T Consensus 249 ~SK~~g~~G-~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (427)
T 2hox_A 249 MSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV 327 (427)
T ss_dssp HHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred ChhcCCCCC-ceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHH
Confidence 999998777 45788888 589999998887765555556554444433332 2334566778888
Q ss_pred HHHHHHHcCCCc
Q 012321 419 RMAKILEAHPKV 430 (466)
Q Consensus 419 ~La~~L~~~p~V 430 (466)
.+.+.|+++|++
T Consensus 328 ~l~~~L~~~~g~ 339 (427)
T 2hox_A 328 NITALLDQSDRF 339 (427)
T ss_dssp HHHHHHTTSSSE
T ss_pred HHHHHHHhCcCc
Confidence 999999988655
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=179.11 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=124.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
++....+..+...++++++++ +|.++.+++++|+ +|+.+++.+++++||+|++++++|.+....+.. .|.++.+
T Consensus 48 ~~d~~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~ 122 (446)
T 2x3l_A 48 GLDDLHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDI----SQQEGHF 122 (446)
T ss_dssp TSCCTTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHH----HTCCEEE
T ss_pred CCccccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHH----cCCeEEE
Confidence 344444567788999999999 9987778888876 999999999999999999999999987654432 3555444
Q ss_pred eCC-----------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-----ccch
Q 012321 280 IDP-----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKA 343 (466)
Q Consensus 280 vd~-----------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-----~~~p 343 (466)
++. .|+++| +++ ++++|++++ .|++|.+.|+++|.++|+++|+++|+|++|+..+ ....
T Consensus 123 v~~~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~ 197 (446)
T 2x3l_A 123 IETHQSPLTNHYNKVNLSRL---NND-GHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDST 197 (446)
T ss_dssp CEEEECTTTSSEEEEEC-----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCG
T ss_pred EeCeeccccCcCCCCCHHHH---cCC-CceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCCh
Confidence 432 245555 344 489999999 4569999999999999999999999999987622 2234
Q ss_pred hccCCcEEEeccccccccccCceEEEEEeChHHHH
Q 012321 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT 378 (466)
Q Consensus 344 l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~ 378 (466)
...|+|+++.|+||+++++. .+|++++++++++
T Consensus 198 ~~~g~Di~~~S~~K~l~~~~--g~g~l~~~~~~i~ 230 (446)
T 2x3l_A 198 LNYQADYVVQSFHKTLPALT--MGSVLYIHKNAPY 230 (446)
T ss_dssp GGGTCSEEEECHHHHSSSCT--TCEEEEEETTCTT
T ss_pred HHcCCCEEEECCcccccccc--ccEEEEEcCCcCC
Confidence 45689999999999877664 2588888776644
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-17 Score=167.00 Aligned_cols=218 Identities=15% Similarity=0.182 Sum_probs=148.9
Q ss_pred CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCccchHH-HHHhhc----
Q 012321 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRI-FIETVL---- 270 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~--------pGD~VLv~~~~y~~t~~-~~~~~l---- 270 (466)
++..+...+|+++|+++++ .++++++++|++|+.+++..+.. +||+||+.++.|++... .+...-
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~ 168 (449)
T 3a8u_X 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN 168 (449)
T ss_dssp SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence 5667889999999999985 36778888899999999987764 78999999999987532 222110
Q ss_pred ----c--cCCcEEEEeCC--------CC--------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHHHHH
Q 012321 271 ----P--KMGITATVIDP--------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDL 321 (466)
Q Consensus 271 ----~--~~gi~v~~vd~--------~D--------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I~el 321 (466)
. ..++....++. .| +++|++++++ .++++|+++..+|++|.+.+ +++|.++
T Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 248 (449)
T 3a8u_X 169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI 248 (449)
T ss_dssp HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence 0 01333322221 25 8999998862 24788887665678999888 9999999
Q ss_pred HHhcCCEEEEeCCCCC-CCc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-------HhC
Q 012321 322 CHKKGAIVCIDGTFAT-PLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLG 388 (466)
Q Consensus 322 a~~~gillIvD~t~a~-~~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-------~~G 388 (466)
|+++|++||+||+|.. +.. ........|++ |++|.+++ |....|++++++++++.++.... ..+
T Consensus 249 ~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (449)
T 3a8u_X 249 CNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG 325 (449)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCC
T ss_pred HHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCccccccccccc
Confidence 9999999999999853 211 11122345766 78899986 31346778888888888765310 111
Q ss_pred --CCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012321 389 --GALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 389 --~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~ 426 (466)
...++..+..++..++.+. ..+++..++.+.+.+.|++
T Consensus 326 ~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (449)
T 3a8u_X 326 YTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG 367 (449)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 2345665555555555443 3566777788888888876
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=174.01 Aligned_cols=227 Identities=11% Similarity=0.157 Sum_probs=153.1
Q ss_pred CCccCCCCchhHHHH----HHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh----c---------cC------CC-EEE
Q 012321 201 SFEYGRYGNPTTVVV----EEKMSALEGA---ESTVIMASGMSASTVMLLAL----V---------PA------GG-HIV 253 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~L----ee~lA~l~g~---e~~v~~~SG~aAi~~al~al----l---------~p------GD-~VL 253 (466)
.+.|.. .|....+ ++++++++|. +..+++++|++|+..++.+. + .+ || +|+
T Consensus 129 ~~~~~~--~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~ 206 (497)
T 2qma_A 129 MDSWDQ--ASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIV 206 (497)
T ss_dssp TTCGGG--CHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEE
T ss_pred ccchhh--ChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEE
Confidence 344543 3444555 4559999986 45777888889998888763 3 13 46 899
Q ss_pred EcCCCccchHHHHHhhcccCCc-EEEEeCCC-----CHHHHHHhccCC---Cc--eEEEEeCCCCCCcccccHHHHHHHH
Q 012321 254 TTTDCYRKTRIFIETVLPKMGI-TATVIDPA-----DMEGLEAALNNN---NV--SLFFTESPTNPFLRCVDVKLVSDLC 322 (466)
Q Consensus 254 v~~~~y~~t~~~~~~~l~~~gi-~v~~vd~~-----D~e~Le~ai~~~---~t--klV~lesPsNPtG~v~dl~~I~ela 322 (466)
++.+.|.+....+.. +. .|. ++..++.. |+++|+++|+++ .+ .+|+++.++|++|.+.|+++|.++|
T Consensus 207 ~s~~~h~s~~~~~~~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~ 284 (497)
T 2qma_A 207 CSKKSHFTVQKSASW-MG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA 284 (497)
T ss_dssp EETTSCTHHHHHHHH-TT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred ECCCchHHHHHHHHH-cC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 999899886654432 21 133 56666543 789999888642 13 4888999999999999999999999
Q ss_pred HhcCCEEEEeCCCCCCCccch----h-cc-CCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHh--------
Q 012321 323 HKKGAIVCIDGTFATPLNQKA----L-SL-GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-------- 387 (466)
Q Consensus 323 ~~~gillIvD~t~a~~~~~~p----l-~~-gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~-------- 387 (466)
+++|+++|+|++|+.+....+ + .. ++|+++.|+||+++++.+ .|+++. ++..++.+......+
T Consensus 285 ~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~ 362 (497)
T 2qma_A 285 VKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYLNREHDELP 362 (497)
T ss_dssp HHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC-------------
T ss_pred HHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhcCCccccCC
Confidence 999999999999876543222 1 12 679999999999988753 466555 444443332100000
Q ss_pred ---CC------CchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 388 ---GG------ALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 388 ---G~------~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
+. ....+..|.+++ +.+.+..++++..++++++.+.|+++|.++.+
T Consensus 363 ~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 419 (497)
T 2qma_A 363 NLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELL 419 (497)
T ss_dssp -------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEC
T ss_pred CccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 00 012334455555 34567778888999999999999998877543
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=170.13 Aligned_cols=205 Identities=12% Similarity=0.067 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeC-CHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~-SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
...+++++++++++|.+ +.++++ +|++++..++.+++++||+|++..+.|.+.+ +...++..| ++.+++.
T Consensus 49 ~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~ 125 (362)
T 2c0r_A 49 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEA 125 (362)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGG
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccc
Confidence 35788999999999985 445664 5569999999999999999998876654432 112333446 5555431
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEecc
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~ 355 (466)
.|.++++ +++ +|++|++++|+||||.+ .|+++| +|+++|+|++|+.+.....+. ..|+++.|+
T Consensus 126 ~~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~ 195 (362)
T 2c0r_A 126 SNYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGA 195 (362)
T ss_dssp GTTCSCCCGGGCC--CCT-TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEET
T ss_pred cccccCCCHHHcc--cCC-CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEec
Confidence 1333332 665 49999999999999996 677776 899999999987654321222 248999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHH------------HHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHH
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNL------------HHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTA 417 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~------------~~~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na 417 (466)
||++++.| .|+++++++++++++.. ......+.+....+.+...++ .++.+.+++.+++
T Consensus 196 ~K~~g~~G---~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 272 (362)
T 2c0r_A 196 QKNLGPSG---VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKA 272 (362)
T ss_dssp TTTTCCSS---CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccccCcC---cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99998655 58998888877655321 001223444443333333333 3566778888899
Q ss_pred HHHHHHHHcCCCc
Q 012321 418 LRMAKILEAHPKV 430 (466)
Q Consensus 418 ~~La~~L~~~p~V 430 (466)
+++.+.|++++.+
T Consensus 273 ~~l~~~L~~~~~~ 285 (362)
T 2c0r_A 273 SLIYDAIDQSGGF 285 (362)
T ss_dssp HHHHHHHHTSTTS
T ss_pred HHHHHHHHHcCCc
Confidence 9999999988733
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=171.59 Aligned_cols=226 Identities=15% Similarity=0.192 Sum_probs=160.5
Q ss_pred CCccCCCCchhHHHHHHHH----HhhhCCC------------cEEEeCCHHHHHHHHHHHhcc-----------------
Q 012321 201 SFEYGRYGNPTTVVVEEKM----SALEGAE------------STVIMASGMSASTVMLLALVP----------------- 247 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~l----A~l~g~e------------~~v~~~SG~aAi~~al~all~----------------- 247 (466)
.+.|. ..|...++|+.+ ++++|.+ ..+++++|++|+..++.+...
T Consensus 107 ~~~~~--~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~ 184 (481)
T 4e1o_A 107 GFTWA--SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESS 184 (481)
T ss_dssp CSSTT--TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred cCCcC--CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCccccccc
Confidence 34454 356666776654 6667754 468888999988888776532
Q ss_pred --CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC-----ceEEEEeCCCCCCcccccH
Q 012321 248 --AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDV 315 (466)
Q Consensus 248 --pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~~-----tklV~lesPsNPtG~v~dl 315 (466)
+++.|+++...|.+...... ..|+++..++. .|+++|+++|++++ +.+|+++.++|++|.+.|+
T Consensus 185 ~~~~~~v~~s~~~H~s~~~~~~----~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l 260 (481)
T 4e1o_A 185 LNARLVAYASDQAHSSVEKAGL----ISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCL 260 (481)
T ss_dssp HHTTEEEEEETTSCHHHHHHHH----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred ccCCeEEEEcCcchHHHHHHHH----hCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCH
Confidence 57899999999998665442 35778877764 48999999996531 6788899999999999999
Q ss_pred HHHHHHHHhcCCEEEEeCCCCCCCcc----chhccC---CcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-HH-
Q 012321 316 KLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HV- 386 (466)
Q Consensus 316 ~~I~ela~~~gillIvD~t~a~~~~~----~pl~~g---aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~-~~- 386 (466)
++|+++|++||+++++|++|+.+... +....| +|.++.++||+++++.+. +++++.+++++.+..... ..
T Consensus 261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl 339 (481)
T 4e1o_A 261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIYL 339 (481)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGGG
T ss_pred HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchhc
Confidence 99999999999999999998765321 222224 599999999999988643 445555555443211000 00
Q ss_pred -----------------hCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 387 -----------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 387 -----------------~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
.+.....+..|.+++ +.+.+..+++++.++++++.+.|++.|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 405 (481)
T 4e1o_A 340 RHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP 405 (481)
T ss_dssp CCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred cCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 111123455565544 56678888999999999999999999877543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-17 Score=165.90 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=147.5
Q ss_pred cCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc---c----CCCEEEEcCCCccchHHHHHhhcc---
Q 012321 204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETVLP--- 271 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all---~----pGD~VLv~~~~y~~t~~~~~~~l~--- 271 (466)
+++|.++...+++++++++.+ .++++++++|++|+..++..+. + +||+||+.++.|++..........
T Consensus 80 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~ 159 (429)
T 1s0a_A 80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN 159 (429)
T ss_dssp CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCch
Confidence 346667888999999999995 4677778888899999987653 2 699999999999874322211110
Q ss_pred ---------cCCcEEEEeC---------CCCHHHHHHhccC--CCceEEEEeCC-CCCCccccc----HHHHHHHHHhcC
Q 012321 272 ---------KMGITATVID---------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKG 326 (466)
Q Consensus 272 ---------~~gi~v~~vd---------~~D~e~Le~ai~~--~~tklV~lesP-sNPtG~v~d----l~~I~ela~~~g 326 (466)
..++....++ ..|+++|++++++ .++++|+++.+ +||+|.+.+ +++|.++|+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~ 239 (429)
T 1s0a_A 160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred hhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 0123333232 2478899998873 24778877655 699998776 999999999999
Q ss_pred CEEEEeCCCCCC-C---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH--H-HhC--CCchHHH
Q 012321 327 AIVCIDGTFATP-L---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--H-VLG--GALNPNA 395 (466)
Q Consensus 327 illIvD~t~a~~-~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~-~~G--~~ls~~~ 395 (466)
+++|+||+|... . . ........|++ |++|.+++ |-...|++++++++++.++... . ..+ ...++..
T Consensus 240 ~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~ 316 (429)
T 1s0a_A 240 ILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA 316 (429)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred CEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHH
Confidence 999999998632 1 1 12223346766 67899986 3134688889999888876421 0 011 2234555
Q ss_pred HHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012321 396 AYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 396 A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~~ 427 (466)
+..+...++.+ ....++..++++++.+.|++.
T Consensus 317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l 350 (429)
T 1s0a_A 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPA 350 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 234566677788888888764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-16 Score=163.45 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=130.9
Q ss_pred EEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC-CCce
Q 012321 229 VIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN-NNVS 298 (466)
Q Consensus 229 v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~-~~tk 298 (466)
+++++|+.|+.+++..++. + |+|++++|+|...... ++..|.++..++. .|++++++++++ .+++
T Consensus 101 ~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 175 (405)
T 3k7y_A 101 IQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNM----IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGS 175 (405)
T ss_dssp EEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHH----HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSC
T ss_pred EEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHH----HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCe
Confidence 4455555999999988877 8 9999999999986544 3456777666642 378999998864 2368
Q ss_pred EEEEeCC-CCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc------hh----cc-CCcEEEecccccccccc
Q 012321 299 LFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------AL----SL-GADLVLHSATKFIGGHN 363 (466)
Q Consensus 299 lV~lesP-sNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~------pl----~~-gaDivv~S~sK~lgG~g 363 (466)
+|++++| |||||.+++ +++|+++|+++++++|+|++|....... +. .. ..-|++.|+||.|+.+|
T Consensus 176 ~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G 255 (405)
T 3k7y_A 176 SVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYG 255 (405)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTT
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcc
Confidence 9998766 899999986 6678889999999999999987543210 11 11 23488999999999888
Q ss_pred CceEEEEE---eChHHHHHHHH----HHHHhCCCchHHHHHHHH---Hh-------hHHHHHHHHHHHHHHHHHHHHHH
Q 012321 364 DVLAGSIS---GSGKLVTQIRN----LHHVLGGALNPNAAYLII---RG-------MKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 364 dv~gG~vv---g~~eli~~l~~----~~~~~G~~ls~~~A~l~l---rg-------L~tl~~R~e~~~~na~~La~~L~ 425 (466)
+. .||++ .++++++++.. .....-.+.+.+.+.++. .. .+.+....+++.++++.+.+.|+
T Consensus 256 lR-iG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~ 333 (405)
T 3k7y_A 256 ER-AGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE 333 (405)
T ss_dssp TT-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 67764 36777665542 222222233334333322 21 22234444567888899999998
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-16 Score=164.32 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=149.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh--
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-- 269 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~--------pGD~VLv~~~~y~~t~~~~~~~-- 269 (466)
|.+.++.++...+|+++|+++++ .+.+++++||++|+..++..++. ++++||+.++.|++........
T Consensus 86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~ 165 (459)
T 4a6r_A 86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG 165 (459)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence 44556788999999999999985 46788888899999999988875 5799999999998744222111
Q ss_pred -------cccCCcEEEEeCCC---------C--------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHH
Q 012321 270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV 318 (466)
Q Consensus 270 -------l~~~gi~v~~vd~~---------D--------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I 318 (466)
.......+..++.. | +++|++++++ +++++|++|.++|++|.+.+ +++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l 245 (459)
T 4a6r_A 166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI 245 (459)
T ss_dssp CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence 01111123333311 2 7888888862 34788888777777788776 9999
Q ss_pred HHHHHhcCCEEEEeCCCCCC-C---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH---HHHHhCC
Q 012321 319 SDLCHKKGAIVCIDGTFATP-L---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVLGG 389 (466)
Q Consensus 319 ~ela~~~gillIvD~t~a~~-~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~---~~~~~G~ 389 (466)
.++|++||++||+||+|... . . ........|++ +++|.+++++. ..|++++++++++.+.. .......
T Consensus 246 ~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~--t~sK~l~gg~~-~lg~v~~~~~i~~~~~~~~~~~~~~t~ 322 (459)
T 4a6r_A 246 ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLF--TAAKGLSSGYL-PIGAVFVGKRVAEGLIAGGDFNHGFTY 322 (459)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSS-CCEEEEECHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--ehhhhhcCCCC-CccceeeCHHHHHHhhcCCCcccCCCC
Confidence 99999999999999997632 1 1 11122335666 46799987543 46888899999988872 2221112
Q ss_pred CchHHHHHHHHHhhHHHH--HHHHHHH-HHHHHHH----HHHHcCCCcEEE
Q 012321 390 ALNPNAAYLIIRGMKTLH--LRVQQQN-STALRMA----KILEAHPKVKRV 433 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~--~R~e~~~-~na~~La----~~L~~~p~V~~V 433 (466)
..+++.+..++..|+.+. ..+++.. ++.+++. +.|.++|.+..+
T Consensus 323 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 373 (459)
T 4a6r_A 323 SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV 373 (459)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 334555555555555432 2344444 4444444 444566766544
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=168.48 Aligned_cols=226 Identities=13% Similarity=0.089 Sum_probs=157.6
Q ss_pred CCccCCCCchhHHHHHHH----HHhhhCCC-----------cEEEeCCHHHHHHHHHHHhc-------------------
Q 012321 201 SFEYGRYGNPTTVVVEEK----MSALEGAE-----------STVIMASGMSASTVMLLALV------------------- 246 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~----lA~l~g~e-----------~~v~~~SG~aAi~~al~all------------------- 246 (466)
.+.|. ..|...+||+. +++++|.+ ..+++++|++|+..++.+..
T Consensus 102 ~~~~~--~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~ 179 (475)
T 3k40_A 102 GFTWI--ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTI 179 (475)
T ss_dssp SSSCC--CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred ccCcc--CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 34444 45777777765 56777765 47888999988888776652
Q ss_pred cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHH
Q 012321 247 PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKL 317 (466)
Q Consensus 247 ~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~ 317 (466)
.+++.|+++...|.+..... ...|+++..++. .|+++|+++|+++ .+.+|++..++|++|.+.|+++
T Consensus 180 ~~~~~vi~s~~~H~s~~~~~----~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~ 255 (475)
T 3k40_A 180 LGKLVGYCSDQAHSSVERAG----LLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDE 255 (475)
T ss_dssp HHHEEEEEETTSCHHHHHHH----HHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred cCCeEEEECCCchHHHHHHH----HHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHH
Confidence 13568999999999866543 335788888875 5899999998753 1678888999999999999999
Q ss_pred HHHHHHhcCCEEEEeCCCCCCCccc----hhcc---CCcEEEeccccccccccCceEEEEEeChHHHH-HHHHHHHHh--
Q 012321 318 VSDLCHKKGAIVCIDGTFATPLNQK----ALSL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-- 387 (466)
Q Consensus 318 I~ela~~~gillIvD~t~a~~~~~~----pl~~---gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~-~l~~~~~~~-- 387 (466)
|+++|+++|+++++|++|+.+.... .... .+|.++.++||+++++.+. |++++.+++++. .+......+
T Consensus 256 I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~ 334 (475)
T 3k40_A 256 CGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC-SAMWLKDPSWVVNAFNVDPLYLKH 334 (475)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESSGGGC-------------
T ss_pred HHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCce-EEEEEeCHHHHHHHhcCCccccCC
Confidence 9999999999999999998653321 1112 3699999999999987643 444444454432 221100000
Q ss_pred ----------------CCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 388 ----------------GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 388 ----------------G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
+.....+..|.+++ +.+.+..++++..++++++.+.|+++|+++.+
T Consensus 335 ~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~ 398 (475)
T 3k40_A 335 DMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA 398 (475)
T ss_dssp --------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred CcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 00112344555444 55667888899999999999999999887554
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-17 Score=167.92 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=150.3
Q ss_pred CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhc----------ccC
Q 012321 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PKM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~-g~e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l----------~~~ 273 (466)
+.++...+|+++|+++. +.+.+++++||++|+.+++... +.++++||+.++.|++......... ...
T Consensus 93 ~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 172 (434)
T 2epj_A 93 APGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSA 172 (434)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCC
Confidence 56788999999999999 6788889999999999998862 4557889998999877332110000 012
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCcc
Q 012321 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ 341 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~~ 341 (466)
|+ ++..++..|+++|++++++ .++++|++|..+|++|.+.+ +++|.++|++||++||+||+|......
T Consensus 173 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g 252 (434)
T 2epj_A 173 GVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG 252 (434)
T ss_dssp TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS
T ss_pred CCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC
Confidence 33 2444555689999999873 24888888776778999888 999999999999999999998732111
Q ss_pred -----chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhCC--CchHHHHHHHHHhhHHHH--HHHH
Q 012321 342 -----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLH--LRVQ 411 (466)
Q Consensus 342 -----~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G~--~ls~~~A~l~lrgL~tl~--~R~e 411 (466)
.......|++ |++|.+++ | ..+|++++++++++.++.... ..+. ..++..+..++..++.+. ...+
T Consensus 253 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~ 328 (434)
T 2epj_A 253 LEGAQGYFNIEGDII--VLGKIIGG-G-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYS 328 (434)
T ss_dssp TTHHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHH
T ss_pred cchhhHHhCCCCCee--eecchhcC-C-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence 1112346765 78899997 4 457999999988877654111 1121 345666555555555443 3456
Q ss_pred HHHHHHHHHHHHHHcC
Q 012321 412 QQNSTALRMAKILEAH 427 (466)
Q Consensus 412 ~~~~na~~La~~L~~~ 427 (466)
+..++.+++.+.|++.
T Consensus 329 ~~~~~~~~l~~~L~~~ 344 (434)
T 2epj_A 329 VSREAAKALEEAASEV 344 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777777653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=179.78 Aligned_cols=213 Identities=13% Similarity=0.139 Sum_probs=156.4
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
+.....++|+.+|+++|++.++++++|+ .|+..++.+++++||+||+++++|.+....+ ...|.++.+++.
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l----~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLM----MMSDVTPIYFRPTRNA 268 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHSCCEEEEECCCBCT
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEeccccc
Confidence 4566899999999999999999999996 8999999999999999999999999977543 345777777653
Q ss_pred ------C-----CHHHHHHhccCC-Cce---EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------
Q 012321 283 ------A-----DMEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------ 341 (466)
Q Consensus 283 ------~-----D~e~Le~ai~~~-~tk---lV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~------ 341 (466)
. |+++|+++++++ ++| +|++++| |++|.+.|+++|.++|++++ +++|++|+..+..
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~ 345 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG 345 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence 1 799999999742 244 8999999 89999999999999998764 7999998865421
Q ss_pred -chhccC--CcEE---EeccccccccccCceEEEEEeChHH-HHHHHHHHHHhC-CCchHHHHHH---HHHhhH--HHHH
Q 012321 342 -KALSLG--ADLV---LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG-GALNPNAAYL---IIRGMK--TLHL 408 (466)
Q Consensus 342 -~pl~~g--aDiv---v~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~~~~~~G-~~ls~~~A~l---~lrgL~--tl~~ 408 (466)
.++..| +|++ ++|+||++++.. .+|++..++++ ..++......+. +.+++..... +.+-++ .-..
T Consensus 346 ~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~ 423 (715)
T 3n75_A 346 KCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKR 423 (715)
T ss_dssp SSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHH
T ss_pred ccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHH
Confidence 123333 6766 999999999864 36787765542 234554444443 3333332221 122222 2345
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 012321 409 RVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~p~ 429 (466)
++++..++++++.+.|++.+.
T Consensus 424 ~~~~l~~~a~~~r~~L~~i~~ 444 (715)
T 3n75_A 424 LINGSIERAIKFRKEIKRLRT 444 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 678888899999988887653
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=166.41 Aligned_cols=214 Identities=15% Similarity=0.182 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHhhhCCCcE--EEeCCHHHHHHHHHHH-hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---
Q 012321 210 PTTVVVEEKMSALEGAEST--VIMASGMSASTVMLLA-LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~--v~~~SG~aAi~~al~a-ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~--- 283 (466)
+...++++++++++|.+.. +++.+|++++.+++.+ .+++||+|+++.+.|+.+...+...++..|+++..++..
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~ 187 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR 187 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence 4578999999999998643 4555555444444444 358999999999999988766655556678998888742
Q ss_pred -CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC-CCCCCccchhccCCcEEEecccc----
Q 012321 284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATK---- 357 (466)
Q Consensus 284 -D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t-~a~~~~~~pl~~gaDivv~S~sK---- 357 (466)
|+++ +++ +|++|++++| ||+|.+.|+++|.++||++|+++++|.. .+.+....+..+|+|+++.|.+|
T Consensus 188 ~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~ 261 (438)
T 1wyu_A 188 TPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLP 261 (438)
T ss_dssp CCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCC
T ss_pred cCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCC
Confidence 3333 665 4999999999 9999999999999999999999997744 32233334456789999999554
Q ss_pred -ccccccCceEEEEEeChHHHHHHHHH-------------------------HHHhC-CCc---hHHH---HH--HHHHh
Q 012321 358 -FIGGHNDVLAGSISGSGKLVTQIRNL-------------------------HHVLG-GAL---NPNA---AY--LIIRG 402 (466)
Q Consensus 358 -~lgG~gdv~gG~vvg~~eli~~l~~~-------------------------~~~~G-~~l---s~~~---A~--l~lrg 402 (466)
+++|+ .+|++++++++++.+... +...+ ... .... ++ +...+
T Consensus 262 ~~~~Gp---~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~ 338 (438)
T 1wyu_A 262 MGFGGP---HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG 338 (438)
T ss_dssp CGGGCS---CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCC---CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhC
Confidence 45555 368999998876654210 11112 111 2222 22 22122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 403 MKTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 403 L~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
-+.+....++..++++++.+.|++.|+++.
T Consensus 339 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~ 368 (438)
T 1wyu_A 339 PEGLREVALKSVEMAHKLHALLLEVPGVRP 368 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 233566677788899999999999877643
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-18 Score=171.86 Aligned_cols=205 Identities=10% Similarity=0.072 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHhhhCCC---cEEEeCCH-HHHHHHHHHHhccC---CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 210 PTTVVVEEKMSALEGAE---STVIMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~~~SG-~aAi~~al~all~p---GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
+..+++++++++++|.+ +.++++++ ++|+.+++.+++.+ ||+|+++.+.|... ..+...| ++.+++.
T Consensus 48 ~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~ 121 (360)
T 1w23_A 48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeec
Confidence 35789999999999975 34455555 79999999998865 56677665555431 1234457 7666642
Q ss_pred ------CCHHHHHH-hccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEecc
Q 012321 283 ------ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355 (466)
Q Consensus 283 ------~D~e~Le~-ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~ 355 (466)
.|+++|++ ++++ +|++|++++|+||||.+.+ +| ++++|+++|+|++++.+.....+. ..|+++.|+
T Consensus 122 ~~~~~~~d~~~l~~~~i~~-~~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~ 194 (360)
T 1w23_A 122 TKANSYQSIPDFSEFQLNE-NDAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSSDILSRPLKVN-QFGMIYAGA 194 (360)
T ss_dssp CGGGTSCSCCCGGGCCCCT-TEEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEET
T ss_pred ccccCcCCccchHhhccCC-CCCEEEEeCCCCCcceecc--cc---cccCCceEEEechhhcCCCCcCcc-cCCEEEEEc
Confidence 46788888 8876 4999999999999999987 33 338999999999987654321222 138999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHH------------HhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHH
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH------------VLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTA 417 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~------------~~G~~ls~~~A~l~lrgL~------tl~~R~e~~~~na 417 (466)
||++++.| .|+++++++++++++.... ...++.+....+.+...++ .++.+.++..+++
T Consensus 195 sK~~~~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 271 (360)
T 1w23_A 195 QKNLGPSG---VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKA 271 (360)
T ss_dssp TTTTSCTT---CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccCCCC---cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99998665 5888888887765543210 1112334433333333333 2455677888899
Q ss_pred HHHHHHHHcCCCc
Q 012321 418 LRMAKILEAHPKV 430 (466)
Q Consensus 418 ~~La~~L~~~p~V 430 (466)
+.+.+.|+++|.+
T Consensus 272 ~~l~~~L~~~~~~ 284 (360)
T 1w23_A 272 KIIYDTIDESNGF 284 (360)
T ss_dssp HHHHHHHHTTTTS
T ss_pred HHHHHHHHHccCc
Confidence 9999999988753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=163.01 Aligned_cols=218 Identities=13% Similarity=0.036 Sum_probs=145.1
Q ss_pred CCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhcc-CCCEEEEcCCCccchHHHHHhh----------c
Q 012321 205 GRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETV----------L 270 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~-pGD~VLv~~~~y~~t~~~~~~~----------l 270 (466)
.++.++...+|++++++++|. ++++++++|++|+..++..+.. +||+||+.+|.|++........ .
T Consensus 81 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 457788899999999999985 3566667788999999887543 4999999999998643322111 1
Q ss_pred ccCCcEEEEeCCC---------------------CHHHHH-HhccC----CCceEEEEeCCCCCCccccc----HHHHHH
Q 012321 271 PKMGITATVIDPA---------------------DMEGLE-AALNN----NNVSLFFTESPTNPFLRCVD----VKLVSD 320 (466)
Q Consensus 271 ~~~gi~v~~vd~~---------------------D~e~Le-~ai~~----~~tklV~lesPsNPtG~v~d----l~~I~e 320 (466)
......+..++.. |+++|+ +++++ .++++|+++..+||+|.+.+ +++|.+
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~ 240 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence 0111233444321 367888 88863 24677776544567898665 999999
Q ss_pred HHHhcCCEEEEeCCCCCCC-c-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHH
Q 012321 321 LCHKKGAIVCIDGTFATPL-N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394 (466)
Q Consensus 321 la~~~gillIvD~t~a~~~-~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~ 394 (466)
+|+++|++||+||+|.... . ........|++ |++|.+++ |-.+.|+++++++++ .+ ..........++.
T Consensus 241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~ 315 (419)
T 2eo5_A 241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNTFGGNAL 315 (419)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC-------CCCCCHH
T ss_pred HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccCCCCCCCHH
Confidence 9999999999999986321 1 11122345665 78999996 413568888888877 66 2111222334566
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 395 ~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.+..+...++.+....++..++++++.+.|++.
T Consensus 316 ~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~ 348 (419)
T 2eo5_A 316 ACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL 348 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555556555446677788889999999875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=164.58 Aligned_cols=215 Identities=14% Similarity=0.138 Sum_probs=142.7
Q ss_pred CCCchhHHHHHHHHHhhh-C-C-CcEEEeCCHHHHHHHHHH---HhccCCCEEEEcCCCccchHH-HHHhh-cc-----c
Q 012321 206 RYGNPTTVVVEEKMSALE-G-A-ESTVIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRI-FIETV-LP-----K 272 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~-g-~-e~~v~~~SG~aAi~~al~---all~pGD~VLv~~~~y~~t~~-~~~~~-l~-----~ 272 (466)
++.++...+|+++|++++ | . ++.+++++|++|+.+++. ++.++| +|++.++.|++... .+... .+ .
T Consensus 80 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~ 158 (426)
T 1sff_A 80 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAG 158 (426)
T ss_dssp TEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTT
T ss_pred ccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccc
Confidence 445788899999999999 5 3 456677777899999987 666766 89999999987543 22211 11 1
Q ss_pred CC---cEEEEeCC----------CCHHHHHHhccC----CCceEEEEe-CCCCCCccccc----HHHHHHHHHhcCCEEE
Q 012321 273 MG---ITATVIDP----------ADMEGLEAALNN----NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVC 330 (466)
Q Consensus 273 ~g---i~v~~vd~----------~D~e~Le~ai~~----~~tklV~le-sPsNPtG~v~d----l~~I~ela~~~gillI 330 (466)
++ ..+..++. .|+++|++++++ .++++|+++ +++| ||.+.+ +++|.++|+++|++||
T Consensus 159 ~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li 237 (426)
T 1sff_A 159 MGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLI 237 (426)
T ss_dssp SCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 11 01333332 268899988862 247888885 3567 997777 9999999999999999
Q ss_pred EeCCCCCCCc------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012321 331 IDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK 404 (466)
Q Consensus 331 vD~t~a~~~~------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~ 404 (466)
+|++|..... ........|++ |+||++++ | .+.|++++++++++.++..........++..+..+...++
T Consensus 238 ~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~ 313 (426)
T 1sff_A 238 ADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-G-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLK 313 (426)
T ss_dssp EECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-S-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred EechhhccCcccchhhhhhcCCCCCEE--EEcccccC-C-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH
Confidence 9999874211 11122235655 88999997 5 5679999998888776532222223345665555554554
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHc
Q 012321 405 TLHL--RVQQQNSTALRMAKILEA 426 (466)
Q Consensus 405 tl~~--R~e~~~~na~~La~~L~~ 426 (466)
.+.. ..++..++++.+.+.|++
T Consensus 314 ~~~~~~~~~~~~~~~~~l~~~l~~ 337 (426)
T 1sff_A 314 VFEQENLLQKANDLGQKLKDGLLA 337 (426)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4432 345566677777776665
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-16 Score=162.76 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=149.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh--
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-- 269 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~--------pGD~VLv~~~~y~~t~~~~~~~-- 269 (466)
|.+.++.++...+|+++|+++.+ .+.+++++||++|+..++..++. ++++||+.++.|++........
T Consensus 87 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~ 166 (460)
T 3gju_A 87 HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTG 166 (460)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCC
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccC
Confidence 44456678889999999999874 36788888999999999988764 5689999999998744222111
Q ss_pred -------cccCCcEEEEeC--C----CC------------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHH
Q 012321 270 -------LPKMGITATVID--P----AD------------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKL 317 (466)
Q Consensus 270 -------l~~~gi~v~~vd--~----~D------------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~ 317 (466)
+......+..++ . .| +++|++++++ +++++|++|.++|++|.+.+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~ 246 (460)
T 3gju_A 167 LDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEK 246 (460)
T ss_dssp CGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred CcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHH
Confidence 111111233333 1 12 6889888862 34899999988888888665 999
Q ss_pred HHHHHHhcCCEEEEeCCCCCC-C---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-------H
Q 012321 318 VSDLCHKKGAIVCIDGTFATP-L---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------H 384 (466)
Q Consensus 318 I~ela~~~gillIvD~t~a~~-~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-------~ 384 (466)
|.++|++||++||+||+|... . . ........|++ +++|.++++. ...|++++++++++.+... .
T Consensus 247 l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l~gG~-~~lg~v~~~~~i~~~~~~~~~~~~~~~ 323 (460)
T 3gju_A 247 IQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--TIAKGLTSAY-APLSGVIVADRVWQVLVQGSDKLGSLG 323 (460)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTTS-SCCEEEEEEHHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--eeehhhcCCC-CCeEEEEECHHHHHHHhcccccccccc
Confidence 999999999999999998632 1 1 11122235665 5779998742 3468889999999888642 1
Q ss_pred HHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHH----HHHHHHcCCCcEEE
Q 012321 385 HVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALR----MAKILEAHPKVKRV 433 (466)
Q Consensus 385 ~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~----La~~L~~~p~V~~V 433 (466)
.......++..+..++..++.+. ..+++..++.++ |.+.|+++|.+..+
T Consensus 324 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 378 (460)
T 3gju_A 324 HGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV 378 (460)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 11122345666555555555332 223444444444 44555667766544
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=165.43 Aligned_cols=215 Identities=18% Similarity=0.211 Sum_probs=140.9
Q ss_pred CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH---hccCCCEEEEcCCCccchHHHHHhhc------c-cCCc
Q 012321 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVL------P-KMGI 275 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~-g~e~~v~~~SG~aAi~~al~a---ll~pGD~VLv~~~~y~~t~~~~~~~l------~-~~gi 275 (466)
+.++..+++.+++++++ +.+++++++||++|+..++.. +. .+++||+.++.|++......... . ..|+
T Consensus 94 ~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~ 172 (453)
T 2cy8_A 94 ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT-GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV 172 (453)
T ss_dssp SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH-CCCEEEEECC-------------------------
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC
Confidence 46788889999998887 457788889999999999887 44 45788888899986433211100 0 0133
Q ss_pred ------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCcc--
Q 012321 276 ------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (466)
Q Consensus 276 ------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~~-- 341 (466)
.+..++..|+++|++++++ .++++|+++..+|++|.+.+ +++|.++|++||++||+||+|......
T Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~ 252 (453)
T 2cy8_A 173 LPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNH 252 (453)
T ss_dssp ---CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTT
T ss_pred CccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCch
Confidence 2444555789999999873 24788888766678998887 999999999999999999998732111
Q ss_pred ---chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH---H--HHHhCCCchHHHHHHHHHhhHH-H-HHHHH
Q 012321 342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---L--HHVLGGALNPNAAYLIIRGMKT-L-HLRVQ 411 (466)
Q Consensus 342 ---~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~---~--~~~~G~~ls~~~A~l~lrgL~t-l-~~R~e 411 (466)
.......|++ |++|.+++ | ..+|++++++++++.++. . ........++..+..++..++. + +...+
T Consensus 253 ~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~ 328 (453)
T 2cy8_A 253 GMQALLDVQPDLT--CLAKASAG-G-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCA 328 (453)
T ss_dssp HHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHhCCCCcEE--EEChhhhC-C-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHH
Confidence 1122345765 78899997 4 357999999988877654 1 1111123456666665556655 3 33456
Q ss_pred HHHHHHHHHHHHHHc
Q 012321 412 QQNSTALRMAKILEA 426 (466)
Q Consensus 412 ~~~~na~~La~~L~~ 426 (466)
+..++.+.+.+.|++
T Consensus 329 ~~~~~~~~l~~~L~~ 343 (453)
T 2cy8_A 329 KINDLGQFAREAMNH 343 (453)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777765
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=168.40 Aligned_cols=213 Identities=17% Similarity=0.172 Sum_probs=140.2
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC-----C----CEEEEcCCCccchHHHHHhhcccCCcEEE
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----G----GHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~p-----G----D~VLv~~~~y~~t~~~~~~~l~~~gi~v~ 278 (466)
..+...+|+++++++++.+++++++||++|+.+++.+++.+ | |+|++. +.|+.++...... .+..+.
T Consensus 72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~---~~~~~~ 147 (467)
T 2oqx_A 72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQI---NGCTVR 147 (467)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH---TTCEEE
T ss_pred cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhhc---cCccee
Confidence 35678899999999999999999999999999999998888 9 998876 4554433222111 111111
Q ss_pred E------e--C-------CCCHHHHHHhccC---CCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCC
Q 012321 279 V------I--D-------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFA 336 (466)
Q Consensus 279 ~------v--d-------~~D~e~Le~ai~~---~~tklV~lesPsNPt-G~v~d---l~~I~ela~~~gillIvD~t~a 336 (466)
. + + ..|+++|++++++ .++++|++++|+||+ |.+.+ +++|.++|++||++||+|+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~ 227 (467)
T 2oqx_A 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF 227 (467)
T ss_dssp ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 1 1 1 1389999999973 248999999999998 77764 7899999999999999996543
Q ss_pred C--------------CCccchhc----cCCcEEEeccccccccccCceEEEEEeChH-HHHHHHHHHHH---hC-----C
Q 012321 337 T--------------PLNQKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHV---LG-----G 389 (466)
Q Consensus 337 ~--------------~~~~~pl~----~gaDivv~S~sK~lgG~gdv~gG~vvg~~e-li~~l~~~~~~---~G-----~ 389 (466)
. +.....+. .++|+++.|++|+++++ +||+++++++ +++.+..++.. .+ +
T Consensus 228 ~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (467)
T 2oqx_A 228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304 (467)
T ss_dssp HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred hhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCccccc
Confidence 2 11111111 34788999999999865 3688888766 55444433221 11 1
Q ss_pred CchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012321 390 ALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~~ 427 (466)
.........+..+++.. ..++++..++++.+.+.|+++
T Consensus 305 ~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (467)
T 2oqx_A 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI 344 (467)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 12221111112232322 235666678888999999886
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=164.87 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=142.4
Q ss_pred CCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc----CC----CEEEEcCCCccchHHHHHhh-----
Q 012321 205 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP----AG----GHIVTTTDCYRKTRIFIETV----- 269 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~----pG----D~VLv~~~~y~~t~~~~~~~----- 269 (466)
.++.++...+|+++|+++.+ .+.+++++||++|+..++..+.. +| |+||+.++.|++........
T Consensus 82 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 161 (448)
T 3dod_A 82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIEL 161 (448)
T ss_dssp SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence 45667889999999999985 36788889999999999988765 55 99999999997743211110
Q ss_pred ----cccCCcEEEEeCCC----------------CHHHHHHhcc--CCCceEEEEeCCC-CCCccccc----HHHHHHHH
Q 012321 270 ----LPKMGITATVIDPA----------------DMEGLEAALN--NNNVSLFFTESPT-NPFLRCVD----VKLVSDLC 322 (466)
Q Consensus 270 ----l~~~gi~v~~vd~~----------------D~e~Le~ai~--~~~tklV~lesPs-NPtG~v~d----l~~I~ela 322 (466)
.......+..++.. |+++|+++++ +.++++|++|.++ |++|.+.+ +++|.++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 00001122233322 3788999886 2348899998888 89997765 99999999
Q ss_pred HhcCCEEEEeCCCCCCC----c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH-------HHHHhCC
Q 012321 323 HKKGAIVCIDGTFATPL----N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-------LHHVLGG 389 (466)
Q Consensus 323 ~~~gillIvD~t~a~~~----~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~-------~~~~~G~ 389 (466)
++||++||+||+|.... . ........|++ +++|.+++ |....|++++++++++.+.. .......
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~ 318 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSY 318 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTT
T ss_pred HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCceEEEEECHHHHHHhhhccccCCcccccCCC
Confidence 99999999999976321 1 11122234655 57899986 43357899999999888754 2211222
Q ss_pred CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHH---cCCCcEEE
Q 012321 390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILE---AHPKVKRV 433 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~---~~p~V~~V 433 (466)
..+++.+..++..++.+. ..+++..++.+++.+.|+ .+|.+..+
T Consensus 319 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 367 (448)
T 3dod_A 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI 367 (448)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred CcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 345666665555555432 234555555555555544 55655443
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=168.68 Aligned_cols=151 Identities=16% Similarity=0.265 Sum_probs=114.8
Q ss_pred cEEEeCCHH-HHHHHHHHH-----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhcc
Q 012321 227 STVIMASGM-SASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN 293 (466)
Q Consensus 227 ~~v~~~SG~-aAi~~al~a-----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~ 293 (466)
+.|++++|+ +++..++.+ ++++||+|++++|.|.+..... .+...|+++..++. .|+++|+++++
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 456666665 899988887 4789999999999999865432 24445677666642 57899998886
Q ss_pred CCCceEEEEeCCCCCCccccc---HHHHHHHH--HhcCCEEEEeCCCCCCCc--cchhc--cCCcEEEeccccccccccC
Q 012321 294 NNNVSLFFTESPTNPFLRCVD---VKLVSDLC--HKKGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHND 364 (466)
Q Consensus 294 ~~~tklV~lesPsNPtG~v~d---l~~I~ela--~~~gillIvD~t~a~~~~--~~pl~--~gaDivv~S~sK~lgG~gd 364 (466)
+ ++++|++++|+||||.+++ +++|.++| +++|+++|+|++|..... ..... .+.++++.|+||++|.+|.
T Consensus 244 ~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl 322 (546)
T 2zy4_A 244 P-AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW 322 (546)
T ss_dssp T-TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG
T ss_pred C-CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc
Confidence 6 4999999999999999986 56678888 789999999999875432 11122 2457999999999987774
Q ss_pred ceEEEEEeChH-HHHHHH
Q 012321 365 VLAGSISGSGK-LVTQIR 381 (466)
Q Consensus 365 v~gG~vvg~~e-li~~l~ 381 (466)
+.|+++++++ +++++.
T Consensus 323 -RiG~~~~~~~~l~~~l~ 339 (546)
T 2zy4_A 323 -RLGVVAAHQQNVFDLAL 339 (546)
T ss_dssp -CEEEEEEESSCHHHHHH
T ss_pred -ceEEEEECCHHHHHHHH
Confidence 5788888765 777663
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=164.33 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=146.1
Q ss_pred CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhh---------cc-cC
Q 012321 207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-KM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~---------l~-~~ 273 (466)
+.++...+|+++|+++++ .+++++++||++|+..++..+.. ++++||+.++.|++........ .. ..
T Consensus 92 ~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 171 (434)
T 3l44_A 92 TPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 171 (434)
T ss_dssp SCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcC
Confidence 568889999999999984 57788888999999999987654 7899999999997743111000 00 00
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012321 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--- 338 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~--- 338 (466)
++ ++..++..|+++|++++++ .++++|++|.++|++|.+.+ +++|.++|++||++||+||+|...
T Consensus 172 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g 251 (434)
T 3l44_A 172 GVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFM 251 (434)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSS
T ss_pred CCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecc
Confidence 11 3445556689999998862 24788888877777888887 999999999999999999998742
Q ss_pred Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH---HHhCCCchHHHHHHHHHhhHHH--HHHHH
Q 012321 339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTL--HLRVQ 411 (466)
Q Consensus 339 ~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~---~~~G~~ls~~~A~l~lrgL~tl--~~R~e 411 (466)
.. ........|++ +++|.+++ | ...|++++++++++.+.... .......++..+..++..++.+ +..++
T Consensus 252 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~ 327 (434)
T 3l44_A 252 YGGAQDLLGVTPDLT--ALGKVIGG-G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYE 327 (434)
T ss_dssp SSCHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred ccHHHHHcCCCCCee--ehhhhhcC-C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHH
Confidence 11 11122334654 67899984 4 45788899999988765421 1111234555555555444433 23455
Q ss_pred HHHHHHHHHHHHHHc
Q 012321 412 QQNSTALRMAKILEA 426 (466)
Q Consensus 412 ~~~~na~~La~~L~~ 426 (466)
+..++.+++.+.|++
T Consensus 328 ~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 328 KLDELGATLEKGILE 342 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=167.08 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=155.1
Q ss_pred cCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHHHHhh----
Q 012321 204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV---- 269 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~-------pG-D~VLv~~~~y~~t~~~~~~~---- 269 (466)
++++.++...+|+++|+++.+ .+.+++++||++|+..++..+.. +| ++||+.++.|.+........
T Consensus 112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence 467778999999999999995 36788889999999999988765 55 48999999997743221111
Q ss_pred ------cccCCcEEEEeCC-------CCHHHHHHhccC--CCceEEEEeC-CCCCCccccc----HHHHHHHHHhcCCEE
Q 012321 270 ------LPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIV 329 (466)
Q Consensus 270 ------l~~~gi~v~~vd~-------~D~e~Le~ai~~--~~tklV~les-PsNPtG~v~d----l~~I~ela~~~gill 329 (466)
.......+.+++. .|+++|++++++ .++++|++|. ++|++|.+.+ +++|.++|+++|++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0111112222322 378899998872 2489999999 8999998875 999999999999999
Q ss_pred EEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH-----HHHhCCCchHHHHHH
Q 012321 330 CIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGGALNPNAAYL 398 (466)
Q Consensus 330 IvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~-----~~~~G~~ls~~~A~l 398 (466)
|+||+|... .. ........|++ +++|.++|+. ...|++++++++++.+... ........++..+..
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~-~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa 348 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGY-LSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAV 348 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTS-SCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCC-cceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence 999997632 11 12223345766 7889998742 3468899999999887522 111112346666666
Q ss_pred HHHhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCcEEEe
Q 012321 399 IIRGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRVH 434 (466)
Q Consensus 399 ~lrgL~tl~--~R~e~~~~na~~La~~L~~---~p~V~~V~ 434 (466)
++..|+.+. ...++..++.+++.+.|++ +|.+..+.
T Consensus 349 a~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr 389 (457)
T 3tfu_A 349 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVR 389 (457)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEE
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeee
Confidence 555565442 2355666777777777765 45565543
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=163.27 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH
Q 012321 210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~ 285 (466)
+..+++++++++++|.+ +.++ +++|++|+.+++.+++++| .+++....|+.......... .+|.++..++..+-
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~g 155 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKN-PFVGEPIIITSDPG 155 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHC-TTSCCCEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHh-CCCCceEEEecCCC
Confidence 35788999999999974 3455 5777799999999999887 23334444432111111111 12555545432210
Q ss_pred HHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCc
Q 012321 286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDV 365 (466)
Q Consensus 286 e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv 365 (466)
......+++ ++++|++++|+||||.+.|+++|.++ +|+++|+|++++.+.....+. ++|+++.|+||+++++++
T Consensus 156 ~~~~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg- 229 (398)
T 2fyf_A 156 SAPEPQTDP-SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG- 229 (398)
T ss_dssp CCCCCCCCT-TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS-
T ss_pred CCCCccccC-CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc-
Confidence 000112555 48999999999999999999988887 899999999987654321222 489999999999998863
Q ss_pred eEEEEEeChHHHHHHHHHHH---------------------HhCCCchHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 012321 366 LAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL 418 (466)
Q Consensus 366 ~gG~vvg~~eli~~l~~~~~---------------------~~G~~ls~~~A~l~lrgL~t------l~~R~e~~~~na~ 418 (466)
.|+++++++++++++.... ....+.+....+.+...++. ++.+.++..++++
T Consensus 230 -~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 230 -LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp -EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred -eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5889999998887754310 00122333332222223322 5566778888999
Q ss_pred HHHHHHHcCCCcE
Q 012321 419 RMAKILEAHPKVK 431 (466)
Q Consensus 419 ~La~~L~~~p~V~ 431 (466)
++.+.|++.|+++
T Consensus 309 ~l~~~L~~~~g~~ 321 (398)
T 2fyf_A 309 RLYSWAQERPYTT 321 (398)
T ss_dssp HHHHHHHHSTTEE
T ss_pred HHHHHHHHcCCce
Confidence 9999999987664
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=160.38 Aligned_cols=225 Identities=13% Similarity=0.118 Sum_probs=141.7
Q ss_pred CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCccchHHHHHhhccc---
Q 012321 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLPK--- 272 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--------~pGD~VLv~~~~y~~t~~~~~~~l~~--- 272 (466)
++.++...+|+++|+++++. ++++++++|++|+..++..++ ..+|+||+.++.|++........-..
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 147 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR 147 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence 56788999999999999864 677788888999999998876 34789999999998744221111000
Q ss_pred ------CCc--EEEEeCCC--------CHHHHHHhccC---CCceEEEEeCCCC-CCccccc----HHHHHHHHHhcCCE
Q 012321 273 ------MGI--TATVIDPA--------DMEGLEAALNN---NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGAI 328 (466)
Q Consensus 273 ------~gi--~v~~vd~~--------D~e~Le~ai~~---~~tklV~lesPsN-PtG~v~d----l~~I~ela~~~gil 328 (466)
... .+..++.. |+++|++++++ +++++|+++.++| ++|.+.+ +++|.++|++||++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 227 (430)
T 3i4j_A 148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII 227 (430)
T ss_dssp --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 000 22223332 44888888862 3478888877777 8888776 99999999999999
Q ss_pred EEEeCCCCCCC----c--cchh-ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH----HHHhCCCchHHHHH
Q 012321 329 VCIDGTFATPL----N--QKAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGALNPNAAY 397 (466)
Q Consensus 329 lIvD~t~a~~~----~--~~pl-~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~----~~~~G~~ls~~~A~ 397 (466)
||+||+|.... . .... ....|++ +++|.+++ |-.+.|++++++++++.++.. ........+++.+.
T Consensus 228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~a 304 (430)
T 3i4j_A 228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVA 304 (430)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHH
T ss_pred EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHH
Confidence 99999986421 1 1111 2234665 57899986 413568889999999988763 22122334566555
Q ss_pred HHHHhhHHHH--HHHHHHHHHHHHHHHHH----HcCCCcEEE
Q 012321 398 LIIRGMKTLH--LRVQQQNSTALRMAKIL----EAHPKVKRV 433 (466)
Q Consensus 398 l~lrgL~tl~--~R~e~~~~na~~La~~L----~~~p~V~~V 433 (466)
.++..++.+. ..+++..++.+++.+.| +++|.+..+
T Consensus 305 aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 346 (430)
T 3i4j_A 305 AGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV 346 (430)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5555554332 23444455554444444 456765543
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-16 Score=159.24 Aligned_cols=218 Identities=11% Similarity=0.127 Sum_probs=143.8
Q ss_pred CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc----------
Q 012321 205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL---------- 270 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l---------- 270 (466)
..+.++...+|+++|+++++. ++++++++|++|+..++..+. ..+|+||+.++.|++.........
T Consensus 80 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 455678889999999999974 667777888999999987653 346899999999977432221110
Q ss_pred ccCCcEEEEeCC------C---------CHHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012321 271 PKMGITATVIDP------A---------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI 328 (466)
Q Consensus 271 ~~~gi~v~~vd~------~---------D~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gil 328 (466)
...++....++. . |+++|++++++ .++++|+++..+||+|.+.+ +++|.++|++||++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 239 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGML 239 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence 011443332221 1 48899998863 34788887655688997665 99999999999999
Q ss_pred EEEeCCCCCCC-cc-----chhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHHH
Q 012321 329 VCIDGTFATPL-NQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLII 400 (466)
Q Consensus 329 lIvD~t~a~~~-~~-----~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~l 400 (466)
||+||+|.... .. .......|++ |++|.+++ | ...|++++++++++.++..... .....++..+..++
T Consensus 240 li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~ 315 (433)
T 1zod_A 240 LILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-G-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGL 315 (433)
T ss_dssp EEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-T-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHH
T ss_pred EEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-C-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHH
Confidence 99999987321 11 1122335654 78899997 4 4678999999998888653211 11223555554444
Q ss_pred HhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012321 401 RGMKTLH--LRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 401 rgL~tl~--~R~e~~~~na~~La~~L~~ 426 (466)
..++.+. ..+++..++.+.+.+.|++
T Consensus 316 aal~~~~~~~~~~~~~~~~~~l~~~l~~ 343 (433)
T 1zod_A 316 RVLDVVQRDGLVARANVMGDRLRRGLLD 343 (433)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4444332 2345566666666666654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-16 Score=161.37 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=148.5
Q ss_pred CCCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhc-----c---CCCEEEEcCCCccchHHHHHhhc-----
Q 012321 205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV-----P---AGGHIVTTTDCYRKTRIFIETVL----- 270 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~all-----~---pGD~VLv~~~~y~~t~~~~~~~l----- 270 (466)
..+.++...+|+++|+++.+. .+++++++|++|+..++..+. . ++|+||+.++.|++........-
T Consensus 86 ~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 165 (452)
T 3n5m_A 86 MSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQR 165 (452)
T ss_dssp TTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred cccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence 456788899999999999875 237777888999999998876 4 78999999999987432221110
Q ss_pred ----ccCCcEEEEeCC--------CC---------HHHHHHhcc---CCCceEEEEeCC-CCCCccccc----HHHHHHH
Q 012321 271 ----PKMGITATVIDP--------AD---------MEGLEAALN---NNNVSLFFTESP-TNPFLRCVD----VKLVSDL 321 (466)
Q Consensus 271 ----~~~gi~v~~vd~--------~D---------~e~Le~ai~---~~~tklV~lesP-sNPtG~v~d----l~~I~el 321 (466)
......+..++. .| +++|+++++ +.++++|++|.+ +| +|.+.+ +++|.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l 244 (452)
T 3n5m_A 166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET 244 (452)
T ss_dssp TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence 011112333332 23 899999987 234899999998 89 998876 9999999
Q ss_pred HHhcCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH---HH---HHhCC
Q 012321 322 CHKKGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LH---HVLGG 389 (466)
Q Consensus 322 a~~~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~---~~---~~~G~ 389 (466)
|++||++||+||+|... .. ........|++ +++|.+++ |-...|++++++++++.++. .. .....
T Consensus 245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~ 321 (452)
T 3n5m_A 245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTF 321 (452)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSS
T ss_pred HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCC
Confidence 99999999999997632 11 11122234665 57899987 41346888899998887743 11 11122
Q ss_pred CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHH----HcCCCcEEE
Q 012321 390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKIL----EAHPKVKRV 433 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L----~~~p~V~~V 433 (466)
..+++.+..++..++.+. ..+++..++.+++.+.| .++|.+..+
T Consensus 322 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 371 (452)
T 3n5m_A 322 GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDI 371 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 345666555555555432 23455555555555554 455665544
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-16 Score=160.84 Aligned_cols=216 Identities=16% Similarity=0.156 Sum_probs=142.8
Q ss_pred CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHH----------hhcccC
Q 012321 207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~----------~~l~~~ 273 (466)
+.++...+|+++|+++.+ .+.+++++||++|+..++.... ..+++||+.++.|++...... ......
T Consensus 90 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 169 (429)
T 4e77_A 90 APTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP 169 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence 567899999999999984 5778888999999999987543 467889999999887542110 000011
Q ss_pred C------cEEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012321 274 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--- 338 (466)
Q Consensus 274 g------i~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~--- 338 (466)
+ ..+..++..|+++|++++++ .++++|+++..++.+|.+.+ +++|.++|++||++||+||+|...
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g 249 (429)
T 4e77_A 170 GVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVA 249 (429)
T ss_dssp TSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTB
T ss_pred CCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccC
Confidence 1 13445566689999999873 24777777554455677777 999999999999999999998732
Q ss_pred Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH---HHhCCCchHHHHHHHHHhhHHH--HHHHH
Q 012321 339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTL--HLRVQ 411 (466)
Q Consensus 339 ~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~---~~~G~~ls~~~A~l~lrgL~tl--~~R~e 411 (466)
.. ........|++ |++|.+++ | ..+|++++++++++.++... .......++..+..++..++.+ +..++
T Consensus 250 ~~~~~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 325 (429)
T 4e77_A 250 LAGAQDYYHVIPDLT--CLGKIIGG-G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYE 325 (429)
T ss_dssp TTCHHHHTTCCCSEE--EEEGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHH
T ss_pred cchHHHhcCCCCCee--eecccccC-C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 11 11222334664 78899985 4 46789999999888765421 1111245666666655555543 33455
Q ss_pred HHHHHHHHHHHHHHc
Q 012321 412 QQNSTALRMAKILEA 426 (466)
Q Consensus 412 ~~~~na~~La~~L~~ 426 (466)
+..++.+++.+.|++
T Consensus 326 ~~~~~~~~l~~~L~~ 340 (429)
T 4e77_A 326 TLTELTDSLATGLRH 340 (429)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665554
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-15 Score=158.04 Aligned_cols=228 Identities=13% Similarity=0.086 Sum_probs=144.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhh-------
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV------- 269 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~------- 269 (466)
|.+.++.++...+|+++|+++.+ .+++++++||++|+..++..... .+++|++.++.|++........
T Consensus 96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 175 (451)
T 3oks_A 96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY 175 (451)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence 44556788899999999999986 35788889999999999976653 4589999999998744322111
Q ss_pred ---cccCCcEEEEeCCC------------------CHHHHHHhc----cCCCceEEEEeCCCCCCccccc----HHHHHH
Q 012321 270 ---LPKMGITATVIDPA------------------DMEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSD 320 (466)
Q Consensus 270 ---l~~~gi~v~~vd~~------------------D~e~Le~ai----~~~~tklV~lesPsNPtG~v~d----l~~I~e 320 (466)
.......+..++.. +++.+++.+ .++++++|++|..++..|.+.+ +++|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~ 255 (451)
T 3oks_A 176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255 (451)
T ss_dssp TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence 01111133344322 233333333 3334677777655555566655 999999
Q ss_pred HHHhcCCEEEEeCCCCCCC------ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHH
Q 012321 321 LCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394 (466)
Q Consensus 321 la~~~gillIvD~t~a~~~------~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~ 394 (466)
+|++||++||+||+|.... .........|++ +++|.+++ | .+.|++++++++++.++..........+++
T Consensus 256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~ 331 (451)
T 3oks_A 256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPI 331 (451)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHH
T ss_pred HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-C-cceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence 9999999999999986321 112222335666 77899987 5 456888899998887754433333345666
Q ss_pred HHHHHHHhhHHHH--HHHHHHHHHHHHHHHHH----HcCCCcEEE
Q 012321 395 AAYLIIRGMKTLH--LRVQQQNSTALRMAKIL----EAHPKVKRV 433 (466)
Q Consensus 395 ~A~l~lrgL~tl~--~R~e~~~~na~~La~~L----~~~p~V~~V 433 (466)
.+..++..++.+. ..+++..++.+++.+.| .++|.+..+
T Consensus 332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 376 (451)
T 3oks_A 332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV 376 (451)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 6666555555432 23444555555555444 456665443
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-16 Score=160.53 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=145.6
Q ss_pred CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHH----------hhcccC
Q 012321 207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g-~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~----------~~l~~~ 273 (466)
+.++...+|+++++++++ .++++++++|++|+..++.... ..+++||+.++.|++...... ......
T Consensus 89 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 168 (427)
T 3fq8_A 89 APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP 168 (427)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCC
Confidence 378889999999999985 5678888899999999885332 345889999989876321110 000011
Q ss_pred Cc------EEEEeCCCCHHHHHHhccCC--CceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012321 274 GI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--- 338 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~--- 338 (466)
++ .+..++..|+++|++++++. ++++|+++.++|++|.+.+ +++|.++|++||++||+||+|...
T Consensus 169 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g 248 (427)
T 3fq8_A 169 GVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA 248 (427)
T ss_dssp SSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB
T ss_pred CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 11 24445556899999998752 4899999988889999988 999999999999999999998733
Q ss_pred Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhCC--CchHHHHHHHHHhhHHH--HHHHH
Q 012321 339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTL--HLRVQ 411 (466)
Q Consensus 339 ~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G~--~ls~~~A~l~lrgL~tl--~~R~e 411 (466)
.. ........|+ .|++|.+++ | .++|++++++++++.++.... ..+. ..++..+..++..++.+ +..++
T Consensus 249 ~~~~~~~~~~~~di--~t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~ 324 (427)
T 3fq8_A 249 YGGVQEKFGVTPDL--TTLGKIIGG-G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE 324 (427)
T ss_dssp TTHHHHHTTCCCSE--EEECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred cchhhHhcCCCCCh--hhhhhhhhC-C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence 11 1112223465 467799995 4 467899999999887764221 1222 23666665555555433 23455
Q ss_pred HHHHHHHHHHHHHHc
Q 012321 412 QQNSTALRMAKILEA 426 (466)
Q Consensus 412 ~~~~na~~La~~L~~ 426 (466)
+..++.+++.+.|++
T Consensus 325 ~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 325 YLDQITKRLSDGLLA 339 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655554
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=162.46 Aligned_cols=216 Identities=16% Similarity=0.178 Sum_probs=146.3
Q ss_pred CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhh---------cc-cC
Q 012321 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-KM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~-g~e~~v~~~SG~aAi~~al~all~--pGD~VLv~~~~y~~t~~~~~~~---------l~-~~ 273 (466)
+.++...+|+++|++++ +.+++++++||++|+..++..+.. ++++|++.++.|++........ .. ..
T Consensus 90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 169 (429)
T 3k28_A 90 APTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSP 169 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCT
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcC
Confidence 56888999999999998 457788888999999999887653 6789999999887632111000 00 00
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC--
Q 012321 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-- 339 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~-- 339 (466)
++ ++..++..|+++|++++++ .++++|++|.++|++|.+.+ +++|.++|++||++||+||+|....
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g 249 (429)
T 3k28_A 170 GVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVA 249 (429)
T ss_dssp TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSS
T ss_pred CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 11 2334445589999998862 24788888877777888887 9999999999999999999986431
Q ss_pred -c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH-hC--CCchHHHHHHHHHhhHHH-HHHHHH
Q 012321 340 -N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-LG--GALNPNAAYLIIRGMKTL-HLRVQQ 412 (466)
Q Consensus 340 -~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~-~G--~~ls~~~A~l~lrgL~tl-~~R~e~ 412 (466)
. ........|++ +++|.+++ | ...|++++++++++.++..... .+ ...+++.+..++..++.+ +..+++
T Consensus 250 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~ 325 (429)
T 3k28_A 250 YNCGQGYYGVTPDLT--CLGKVIGG-G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVE 325 (429)
T ss_dssp TTHHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred cchHHHHhCCCCcee--hhhhhhcC-C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1 11122234554 67899976 4 4578999999998876542211 11 234555555544444422 445666
Q ss_pred HHHHHHHHHHHHHc
Q 012321 413 QNSTALRMAKILEA 426 (466)
Q Consensus 413 ~~~na~~La~~L~~ 426 (466)
..++.+++.+.|++
T Consensus 326 ~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 326 FERKAEMLEAGLRK 339 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776665
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=160.96 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=152.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh--
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-- 269 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~--------pGD~VLv~~~~y~~t~~~~~~~-- 269 (466)
+.+.++.++...+|+++|+++.+. +.+++++||++|+..++..+.. ++++||+.++.|.+........
T Consensus 91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~ 170 (472)
T 3hmu_A 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG 170 (472)
T ss_dssp CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC
Confidence 344567788999999999999853 6788889999999999988764 4689999999998743221111
Q ss_pred -------cccCCcEEEEeCCC---------C--------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHH
Q 012321 270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV 318 (466)
Q Consensus 270 -------l~~~gi~v~~vd~~---------D--------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I 318 (466)
+. ....+..++.. | +++|++.+++ .++++|++|.++|++|.+.+ +++|
T Consensus 171 ~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l 249 (472)
T 3hmu_A 171 MAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEI 249 (472)
T ss_dssp CHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHH
T ss_pred ChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHH
Confidence 11 11122233311 2 7888888862 24899999988888898886 9999
Q ss_pred HHHHHhcCCEEEEeCCCCCC-C---c--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC--CC
Q 012321 319 SDLCHKKGAIVCIDGTFATP-L---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GA 390 (466)
Q Consensus 319 ~ela~~~gillIvD~t~a~~-~---~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G--~~ 390 (466)
.++|+++|++||+||+|... . . ........|+++ ++|.++|.+. ..|++++++++++.+.......+ ..
T Consensus 250 ~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~-plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 250 QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYA-PIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSS-CCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCc-ceEEEEECHHHHHhcccCCccccCCCC
Confidence 99999999999999998632 1 1 112223457775 6799987543 45888889999988732111112 23
Q ss_pred chHHHHHHHHHhhHHHH--HHHHHHH-HHHHHHHHHHHc---CCCcEEE
Q 012321 391 LNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAKILEA---HPKVKRV 433 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~--~R~e~~~-~na~~La~~L~~---~p~V~~V 433 (466)
.++..+..++..|+.+. ..+++.. ++.+++.+.|++ +|.+..|
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v 375 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA 375 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 45666665555555442 2355566 666677776654 4555443
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-16 Score=158.27 Aligned_cols=214 Identities=18% Similarity=0.160 Sum_probs=145.7
Q ss_pred CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH--hccCCCEEEEcCCCccchHHHHHhhc----------ccC
Q 012321 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVL----------PKM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~-g~e~~v~~~SG~aAi~~al~a--ll~pGD~VLv~~~~y~~t~~~~~~~l----------~~~ 273 (466)
+.++...+|+++|++++ +.+++++++||++|+..++.. .+..+|+||+.++.|++......... ...
T Consensus 89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 168 (424)
T 2e7u_A 89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA 168 (424)
T ss_dssp SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence 56788999999999998 567788889999999998875 24456889999999987432110000 012
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCceEEEEeCCCC-CCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012321 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN 340 (466)
Q Consensus 274 gi------~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsN-PtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~ 340 (466)
|+ ++..++..|+++|++++++ .++++|++ +|+| ++|.+.+ +++|.++ ++||++||+||+|.....
T Consensus 169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~ 246 (424)
T 2e7u_A 169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIF-EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRL 246 (424)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEE-CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTS
T ss_pred CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEE-eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccccc
Confidence 32 3445566789999998863 23677777 5555 4898887 9999999 999999999999874311
Q ss_pred cc-----hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhC--CCchHHHHHHHHHhhHHH---HHH
Q 012321 341 QK-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL---HLR 409 (466)
Q Consensus 341 ~~-----pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G--~~ls~~~A~l~lrgL~tl---~~R 409 (466)
.. ......|++ |++|.+++ | ..+|++++++++++.++.... ..+ ...++..+..++..++.+ +..
T Consensus 247 g~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 322 (424)
T 2e7u_A 247 AFGGATELLGLKPDLV--TLGKILGG-G-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGY 322 (424)
T ss_dssp STTHHHHHHTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHH
T ss_pred chhHHHHHhCCCcchh--hhhhhhhC-C-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 11 112235765 88999996 4 457999999998877654211 111 134566555555555544 335
Q ss_pred HHHHHHHHHHHHHHHHc
Q 012321 410 VQQQNSTALRMAKILEA 426 (466)
Q Consensus 410 ~e~~~~na~~La~~L~~ 426 (466)
.++..++.+++.+.|++
T Consensus 323 ~~~~~~~~~~l~~~L~~ 339 (424)
T 2e7u_A 323 YAYLEDLGARLEAGLKE 339 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777777765
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-15 Score=156.49 Aligned_cols=229 Identities=13% Similarity=0.132 Sum_probs=153.5
Q ss_pred CccC-CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh-
Q 012321 202 FEYG-RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV- 269 (466)
Q Consensus 202 ~~Y~-R~~~p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all~--------pGD~VLv~~~~y~~t~~~~~~~- 269 (466)
+.++ .+.++...+|+++|+++.+ .+.+++++||++|+..++..+.. .+++||+.++.|++........
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~ 167 (476)
T 3i5t_A 88 YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACT 167 (476)
T ss_dssp CCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred CcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhcccc
Confidence 3344 5778899999999999985 47788889999999999988763 3679999999998744222111
Q ss_pred --------cccCCcEEEEeCC--------CC--------HHHHHHhccC---CCceEEEEeCCCCCCccccc----HHHH
Q 012321 270 --------LPKMGITATVIDP--------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV 318 (466)
Q Consensus 270 --------l~~~gi~v~~vd~--------~D--------~e~Le~ai~~---~~tklV~lesPsNPtG~v~d----l~~I 318 (466)
.....-.+.+++. .| +++|++.+++ .++++|++|.++|++|.+.+ +++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l 247 (476)
T 3i5t_A 168 GRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARF 247 (476)
T ss_dssp CCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHH
T ss_pred CChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence 0001112233331 11 7788888862 34899999999999987654 9999
Q ss_pred HHHHHhcCCEEEEeCCCCCC----Cc--cc-hhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHH-------
Q 012321 319 SDLCHKKGAIVCIDGTFATP----LN--QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------- 384 (466)
Q Consensus 319 ~ela~~~gillIvD~t~a~~----~~--~~-pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~------- 384 (466)
.++|+++|++||+||++... .. .. ......|+++ ++|.+++ |-...|++++++++++.+....
T Consensus 248 ~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~~ 324 (476)
T 3i5t_A 248 KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPLGGLAISEAVLARISGENAKGSWFT 324 (476)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEEC
T ss_pred HHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCeEEEEECHHHHHHHhcCCccccccc
Confidence 99999999999999998642 11 11 2222357764 6799987 3134688889999988876431
Q ss_pred HHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCcEEE
Q 012321 385 HVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRV 433 (466)
Q Consensus 385 ~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~---~p~V~~V 433 (466)
.......+++.+..++..|+.+. ..+++..++.+++.+.|++ +|.+..+
T Consensus 325 ~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v 378 (476)
T 3i5t_A 325 NGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAET 378 (476)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 11122346666666555565443 3456667777777777765 3545443
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=157.13 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=143.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc------
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL------ 270 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l------ 270 (466)
|.+.++.++...+|+++|+++.+ .+++++++||++|+..++.... ..+++||+.++.|++........-
T Consensus 99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 178 (453)
T 4ffc_A 99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY 178 (453)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence 45566788999999999999986 3578888999999999997654 355899999999987443222110
Q ss_pred ----ccCCcEEEEeCCC----C-------------HHHHHHhccCCCceEEEEeCCCCCC-ccccc----HHHHHHHHHh
Q 012321 271 ----PKMGITATVIDPA----D-------------MEGLEAALNNNNVSLFFTESPTNPF-LRCVD----VKLVSDLCHK 324 (466)
Q Consensus 271 ----~~~gi~v~~vd~~----D-------------~e~Le~ai~~~~tklV~lesPsNPt-G~v~d----l~~I~ela~~ 324 (466)
......+..++.. | ++.|++.+.++++++|++ .|.|++ |.+.+ +++|.++|++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~-ep~~~~gG~~~~~~~~l~~l~~l~~~ 257 (453)
T 4ffc_A 179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIII-EPIQGEGGFIVPAPGFLATLTAWASE 257 (453)
T ss_dssp TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEE-cCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 0111123333322 2 366777775543566666 556555 55554 9999999999
Q ss_pred cCCEEEEeCCCCCC-Cc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH
Q 012321 325 KGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL 398 (466)
Q Consensus 325 ~gillIvD~t~a~~-~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l 398 (466)
||++||+||+|... .. ........|++ +++|.+++ | ...|++++++++++.+...........++..+..
T Consensus 258 ~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aa 333 (453)
T 4ffc_A 258 NGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAA 333 (453)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred cCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHH
Confidence 99999999998632 11 11122234555 57899987 5 4568889999988877644332223345666555
Q ss_pred HHHhhHHHH--HHHHHHHHHHHHHHHH----HHcCCCcEEE
Q 012321 399 IIRGMKTLH--LRVQQQNSTALRMAKI----LEAHPKVKRV 433 (466)
Q Consensus 399 ~lrgL~tl~--~R~e~~~~na~~La~~----L~~~p~V~~V 433 (466)
++..++.+. ..+++..++.+++.+. ++++|.+..+
T Consensus 334 a~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 374 (453)
T 4ffc_A 334 AVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV 374 (453)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 555554332 2344444444444444 4456665443
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=156.92 Aligned_cols=214 Identities=12% Similarity=0.086 Sum_probs=139.8
Q ss_pred CCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc---c-----------CCCEEEEcCCCccchHHHH-
Q 012321 205 GRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV---P-----------AGGHIVTTTDCYRKTRIFI- 266 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all---~-----------pGD~VLv~~~~y~~t~~~~- 266 (466)
.++.++...+++++|+++++ .+++++++||++|+..++..+. . +||+||+.++.|++.....
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 45677889999999999985 3677888889999999887543 2 2899999999998743211
Q ss_pred ---------HhhcccCCcEEEEeCCCC---------------HHHHHHhcc--CCCceEEEEeCCCCCCccccc----HH
Q 012321 267 ---------ETVLPKMGITATVIDPAD---------------MEGLEAALN--NNNVSLFFTESPTNPFLRCVD----VK 316 (466)
Q Consensus 267 ---------~~~l~~~gi~v~~vd~~D---------------~e~Le~ai~--~~~tklV~lesPsNPtG~v~d----l~ 316 (466)
..........+.+++..| +++|+++++ ..++++|++|.++||+|.+.+ ++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 011111112445555444 234888885 135899998877799997666 99
Q ss_pred HHHHHHHhcCCEEEEeCCCCCC-Cc-----cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH-----HHH
Q 012321 317 LVSDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-----LHH 385 (466)
Q Consensus 317 ~I~ela~~~gillIvD~t~a~~-~~-----~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~-----~~~ 385 (466)
+|.++|++||++||+||+|... .. ........|++ +++|++ + .|++++++++++.+.. ...
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~~~~~~l~~~~~~~~~~ 327 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGRRVDEVADNVFAVPSRL 327 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECGGGGGSTTCTTTSTTSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEEECHHHhhhhhhcccCCccc
Confidence 9999999999999999998732 11 12223345765 678998 2 4777788888765321 111
Q ss_pred HhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012321 386 VLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 386 ~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~ 426 (466)
......++..+..++..++.+. ...++..++.+++.+.|++
T Consensus 328 ~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 370 (449)
T 2cjg_A 328 NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370 (449)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 1112235555555444454332 3455667777777777764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-14 Score=147.99 Aligned_cols=236 Identities=15% Similarity=0.080 Sum_probs=142.0
Q ss_pred cCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhh-CC----C--cEEEeCCHHHHHHHHHH----HhccCCCEEE
Q 012321 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALE-GA----E--STVIMASGMSASTVMLL----ALVPAGGHIV 253 (466)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~-g~----e--~~v~~~SG~aAi~~al~----all~pGD~VL 253 (466)
++.+.+...........+.|.- ..-..+|++.++++. |. + ..+-+.+|+.|+..++. .++.|||+|+
T Consensus 64 l~~Vk~A~~~~~~~~~~~~Y~p--~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ 141 (420)
T 4h51_A 64 LRVVRKAEQLLLDMNLDYEYLP--ISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIY 141 (420)
T ss_dssp CHHHHHHHHHHHHTTCCCCCCC--TTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEE
T ss_pred CHHHHHHHHHHhcCCCCCCCCC--cCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEE
Confidence 3444443333322233455663 334556777777653 32 1 23335566666655544 3457999999
Q ss_pred EcCCCccchHHHHHhhcccCCcE-EEE---eC----CCCHHHHHHhcc--CCCceEEEEeCCCCCCccccc---HHHHHH
Q 012321 254 TTTDCYRKTRIFIETVLPKMGIT-ATV---ID----PADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSD 320 (466)
Q Consensus 254 v~~~~y~~t~~~~~~~l~~~gi~-v~~---vd----~~D~e~Le~ai~--~~~tklV~lesPsNPtG~v~d---l~~I~e 320 (466)
+++|.|+.....+. ..|.+ +.. .+ ..|.+.+.+.+. ..+++++++.+|+||||.+++ +++|++
T Consensus 142 ip~P~w~~y~~i~~----~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~ 217 (420)
T 4h51_A 142 LSDPTWPNHYGVVK----AAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIAS 217 (420)
T ss_dssp EEESCCTHHHHHHH----HTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred EecCCchhHHHHHH----HcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 99999998665443 33432 221 22 126666666553 224789999999999999985 678999
Q ss_pred HHHhcCCEEEEeCCCCCCCccc----h------hccC-CcEEEeccccccccccCceEEEEEeChHHHH-------HHHH
Q 012321 321 LCHKKGAIVCIDGTFATPLNQK----A------LSLG-ADLVLHSATKFIGGHNDVLAGSISGSGKLVT-------QIRN 382 (466)
Q Consensus 321 la~~~gillIvD~t~a~~~~~~----p------l~~g-aDivv~S~sK~lgG~gdv~gG~vvg~~eli~-------~l~~ 382 (466)
+|++++++++.|++|....... + .+.+ .-+++.|+||.++..|++ .|++++..+..+ .+..
T Consensus 218 ~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-vG~~~~~~~~~~~~~~~~~~l~~ 296 (420)
T 4h51_A 218 LMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSER-AGTLSLLLKDKTKRADVKSVMDS 296 (420)
T ss_dssp HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCc-eEEEEecccCHHHHHHHHHHHHH
Confidence 9999999999999987543211 1 1112 248899999999999875 566665433222 2222
Q ss_pred HHHHhCCCchHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 383 LHHVLGGALNPNAAYLIIRGM----------KTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 383 ~~~~~G~~ls~~~A~l~lrgL----------~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
.......+.+...+.++...+ +.+....+++.+.++.|.+.|++.
T Consensus 297 ~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~ 351 (420)
T 4h51_A 297 LIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL 351 (420)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444433222 233444556677788888888875
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=148.63 Aligned_cols=205 Identities=10% Similarity=0.101 Sum_probs=138.9
Q ss_pred HHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccC----CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------
Q 012321 216 EEKMSALEGAE---STVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ 282 (466)
Q Consensus 216 ee~lA~l~g~e---~~v~~~SG~aAi~~al~all~p----GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~------ 282 (466)
.++|..+ |.+ ..++++.++.++.+++++.+++ ||+||+++.+|.+.+..+ ...|++..++++
T Consensus 123 ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl----iL~Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 123 LDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----ITAGFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECEEEETTE
T ss_pred HHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHH----HHcCCeEEEEeeeecccc
Confidence 4455555 653 3455555555666777777664 499999999999876544 334666666643
Q ss_pred --CCHHHHHHhccCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc------cchhccC-CcE
Q 012321 283 --ADMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADL 350 (466)
Q Consensus 283 --~D~e~Le~ai~~~---~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~------~~pl~~g-aDi 350 (466)
.|+++|+++|+++ .+.+|+.++++|..+.+.|+++|+++||+||++++|||+|+.... ...+..| +|+
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~ 277 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence 3789999998653 234444444455455778999999999999999999999987542 1234568 999
Q ss_pred EEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 351 VLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~l--rgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
++.|.||.+-.+- .||++.. ++++++++.......-+..+.++.|+++ .|.+-+...+++..++++++.+.|++.
T Consensus 278 vVqS~HK~llvpI--GG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 278 FVQSLDKNFMVPV--GGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp EEEEHHHHHCCCS--SCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccceeec--CceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987662 2344433 5677777643221111222334456554 356677888899999999999999874
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-16 Score=168.71 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=145.9
Q ss_pred CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCc--EEEEe
Q 012321 206 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI 280 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~-g~e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi--~v~~v 280 (466)
++.++...+|+++|++++ +.+.+++++||++|+..++.... ..+|+||+.+..|.+.......-....|+ .+..+
T Consensus 136 ~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~ 215 (465)
T 2yky_A 136 STQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLG 215 (465)
Confidence 356788999999999999 67888899999999999987642 45689999999997733211100012244 33444
Q ss_pred CCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCccchh---ccC--Cc
Q 012321 281 DPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQKAL---SLG--AD 349 (466)
Q Consensus 281 d~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~~~~~pl---~~g--aD 349 (466)
+..|+++|++++++ .++++|++|.+.|++|.+.+ +++|.++|+++|++||+||++. .-..... ..| .|
T Consensus 216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD 294 (465)
Confidence 55688999999973 25899999887777998776 9999999999999999999998 4211111 112 45
Q ss_pred EEEeccccccccccCceEEEEEeChHHHHHHHHH--H---HHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHH
Q 012321 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H---HVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAK 422 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~--~---~~~G~~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~ 422 (466)
+ .+++|++++ | ...|++++++++++.+... . .......++..+..++..|+.+. ...++..+..+++.+
T Consensus 295 i--~t~sK~lg~-G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~ 370 (465)
T 2yky_A 295 L--TTLGKYIGG-G-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA 370 (465)
Confidence 4 478999998 4 4578999999999887651 1 11112234554444444444332 234455555666666
Q ss_pred HHHc
Q 012321 423 ILEA 426 (466)
Q Consensus 423 ~L~~ 426 (466)
.|++
T Consensus 371 ~L~~ 374 (465)
T 2yky_A 371 NLNR 374 (465)
Confidence 5554
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=147.64 Aligned_cols=211 Identities=11% Similarity=0.102 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHhccC----CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 212 TVVVEEKMSALEGAES---TVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~g~e~---~v~~~SG~aAi~~al~all~p----GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
.+.+..++.++.|.+. .+++++++..+.+++++.+++ ++.||+++.+|.+....+ ...|+...+++.
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl----~l~Gl~p~~v~~~~ 175 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----VTAGFEPVVIENVL 175 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHH----HHcCCeeEEEEeee
Confidence 4455666667777642 366666664444455555444 899999999998876443 345666666643
Q ss_pred ------CCHHHHHHhccCCC--ceEEEEeCCCC-CCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------chhcc-
Q 012321 283 ------ADMEGLEAALNNNN--VSLFFTESPTN-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSL- 346 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~--tklV~lesPsN-PtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~------~pl~~- 346 (466)
.|++.|+++|++++ .+++++.+|++ .+|.+.|+++|+++||+||++++||++|+..... ..+..
T Consensus 176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 38999999996521 34555556654 4568899999999999999999999999864322 12233
Q ss_pred CCcEEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~ 423 (466)
++|+++.|+||++..+- .++++.. ++++++++...........+.+..|..+. |.+.+...+++..++++++.+.
T Consensus 256 ~AD~~v~S~HK~l~a~~--~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~ 333 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQ 333 (450)
T ss_dssp CCCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccCCCchh--ccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998875 3566664 56666655432211122333355554432 5556677778888999999999
Q ss_pred HHcCC
Q 012321 424 LEAHP 428 (466)
Q Consensus 424 L~~~p 428 (466)
|++.+
T Consensus 334 l~~~~ 338 (450)
T 3bc8_A 334 LKKLA 338 (450)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 98766
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=141.21 Aligned_cols=222 Identities=18% Similarity=0.144 Sum_probs=143.3
Q ss_pred CCccCCC--CchhHHHH----HHHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHH--H
Q 012321 201 SFEYGRY--GNPTTVVV----EEKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI--E 267 (466)
Q Consensus 201 ~~~Y~R~--~~p~~~~L----ee~lA~l~g~e~-----~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~--~ 267 (466)
||.-.|| +....+.+ .++..+++|++. .|=--||+.|+.+++.++++|||+|+..+..+++....- .
T Consensus 85 GyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~ 164 (490)
T 3ou5_A 85 GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMS 164 (490)
T ss_dssp C----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC-------------
T ss_pred CCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccC
Confidence 4444444 44555554 455677899865 355679999999999999999999999998888743211 0
Q ss_pred hh--cccCCcEEEE----eC----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC--
Q 012321 268 TV--LPKMGITATV----ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-- 335 (466)
Q Consensus 268 ~~--l~~~gi~v~~----vd----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-- 335 (466)
.. ..-.|.-+.. +| ..|.+++++...+.++|+|++-.-. .-+..|.+++.++|++.|++|++|-++
T Consensus 165 ~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHia 242 (490)
T 3ou5_A 165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp ---------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGH
T ss_pred CCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhh
Confidence 00 0001111111 11 2488999988777679999984433 456789999999999999999999995
Q ss_pred ---CCCCccchhccCCcEEEeccccccccccCceEEEEEeCh---------------HHHHHHHHHHH--HhCCCch-HH
Q 012321 336 ---ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGALN-PN 394 (466)
Q Consensus 336 ---a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~---------------eli~~l~~~~~--~~G~~ls-~~ 394 (466)
+.+...+|+.+ +|+|..|.||+|.|| +||+|++++ ++.++|..... ..|+... ..
T Consensus 243 GLVA~g~~psP~~~-ADvVTtTTHKTLrGP---rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~I 318 (490)
T 3ou5_A 243 GLVAAKVIPSPFKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 318 (490)
T ss_dssp HHHHTTSSCCGGGT-CSEEEEESSSTTCSC---SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHH
T ss_pred hhhcccccCCcccc-ceEEeccccccccCC---CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHH
Confidence 45677899987 999999999999999 489999765 45667765433 2333322 22
Q ss_pred HHHHH--HH-hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 395 AAYLI--IR-GMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 395 ~A~l~--lr-gL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
++..+ .. ....+....++..+|++.|++.|.+..
T Consensus 319 AAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G 355 (490)
T 3ou5_A 319 AAVAVALKQACTPMFREYSLQVLKNARAMADALLERG 355 (490)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22211 12 233567788899999999999999875
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=139.01 Aligned_cols=209 Identities=12% Similarity=0.041 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHhhhCCC--c-EEEe-CCHHHHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 210 PTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~-~v~~-~SG~aAi~~al~all~p--GD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...++.++.+++++|.+ . .+++ ++|++++++++..++.+ ||+|++....+.+.. +. ..+++.|+.+.+++.
T Consensus 58 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~-~~-~~a~~~G~~~~~~~~~ 135 (377)
T 3e77_A 58 KIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAK-AA-EEAKKFGTINIVHPKL 135 (377)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHH-HH-HHHTTTSEEEECSCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHH-HH-HHHHHhCCceEEeccC
Confidence 45677789999999974 3 4553 46779999999999876 999988777666542 33 456778887776543
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK 357 (466)
.++++++.+++++ |++|.+.+-.|.+|.+.|+ +|+++|+++++|.+++.+.. .+..+++ +++.|.+|
T Consensus 136 ~~~~~~~~~~~~~i~~~-t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K 207 (377)
T 3e77_A 136 GSYTKIPDPSTWNLNPD-ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQK 207 (377)
T ss_dssp SSSCSCCCGGGCCCCTT-CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGG
T ss_pred CCcCCCCChHHhccCCC-ccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEeccc
Confidence 2456667677764 9999998888889999998 47789999999999876533 3333444 78899999
Q ss_pred ccccccCceEEEEEeChHHHHHHH----------HHHH--HhCCCchHHHHHHHHHhhHH------HHHHHHHHHHHHHH
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIR----------NLHH--VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALR 419 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~----------~~~~--~~G~~ls~~~A~l~lrgL~t------l~~R~e~~~~na~~ 419 (466)
++|++| .|+++.++++++++. .... ....+.+....+.+...++. ++.+.++..+.+++
T Consensus 208 ~~gp~G---~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~ 284 (377)
T 3e77_A 208 NVGSAG---VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQT 284 (377)
T ss_dssp TTSCTT---CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccCCCc---cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 997655 466666655432211 1110 11123333333333333332 45556677788899
Q ss_pred HHHHHHcCCCcE
Q 012321 420 MAKILEAHPKVK 431 (466)
Q Consensus 420 La~~L~~~p~V~ 431 (466)
+.+.|++.|++.
T Consensus 285 l~~~L~~~~g~~ 296 (377)
T 3e77_A 285 IYEIIDNSQGFY 296 (377)
T ss_dssp HHHHHHTSTTSE
T ss_pred HHHHHHhcCCce
Confidence 999999988764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=135.88 Aligned_cols=206 Identities=13% Similarity=0.134 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHhc-------c------------------CC---CEEEEcCCCc
Q 012321 210 PTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV-------P------------------AG---GHIVTTTDCY 259 (466)
Q Consensus 210 p~~~~Lee~lA~l~--g~e~~v~~~SG~aAi~~al~all-------~------------------pG---D~VLv~~~~y 259 (466)
+..+.|+++|+++. +.+.+++++||++|+..++..+. + +| ++||+.++.|
T Consensus 110 ~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~y 189 (472)
T 1ohv_A 110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF 189 (472)
T ss_dssp THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCc
Confidence 44555566566665 45788999999999999997663 1 46 8999999999
Q ss_pred cchHHHHHhhcc-----cCCcE-----EEEeC----C-------------CCHHHHHHhccCC-----CceEEEEeCCCC
Q 012321 260 RKTRIFIETVLP-----KMGIT-----ATVID----P-------------ADMEGLEAALNNN-----NVSLFFTESPTN 307 (466)
Q Consensus 260 ~~t~~~~~~~l~-----~~gi~-----v~~vd----~-------------~D~e~Le~ai~~~-----~tklV~lesPsN 307 (466)
++.......... ..+.. ...++ . .|+++|+++|++. ++++|++|..+|
T Consensus 190 Hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~ 269 (472)
T 1ohv_A 190 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS 269 (472)
T ss_dssp CCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBC
T ss_pred ccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcC
Confidence 874322211110 11111 11111 0 1578888888751 489999998888
Q ss_pred CCccccc----HHHHHHHHHhcCCEEEEeCCCCC-CCc---cchhccC----CcEEEeccccc-cccccCceEEEEEeCh
Q 012321 308 PFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT-PLN---QKALSLG----ADLVLHSATKF-IGGHNDVLAGSISGSG 374 (466)
Q Consensus 308 PtG~v~d----l~~I~ela~~~gillIvD~t~a~-~~~---~~pl~~g----aDivv~S~sK~-lgG~gdv~gG~vvg~~ 374 (466)
++|.+.+ +++|.++|+++|++||+||+|.. +.. .....+| .|++ +++|. ++ ||+++ ++
T Consensus 270 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~ 340 (472)
T 1ohv_A 270 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KE 340 (472)
T ss_dssp TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-ch
Confidence 9998877 99999999999999999999863 111 1111234 5765 67798 44 36666 65
Q ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012321 375 KLVTQIRNLHHVLGG-ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 375 eli~~l~~~~~~~G~-~ls~~~A~l~lrgL~tl~--~R~e~~~~na~~La~~L~~ 426 (466)
++. .+.... ..+. ..++..+..++..++.+. ...++..++.++|.+.|++
T Consensus 341 ~~~-~~~~~~-~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 393 (472)
T 1ohv_A 341 EFR-PNAPYR-IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLD 393 (472)
T ss_dssp GGS-CSSSSS-SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhc-cccccc-ccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 542 111111 1121 235555554444444332 2345566666667666654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=131.01 Aligned_cols=204 Identities=10% Similarity=0.033 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e---~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
...++.++.+++++|.+ +.++ +++|++++++++..++ +||++++....+.+. .+. ..+++.|+++++++.
T Consensus 50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~-~~~-~~a~~~G~~v~~~~~~~~ 126 (361)
T 3m5u_A 50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTK-KAI-KEAQILGVNVKTVASSEE 126 (361)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHH-HHH-HHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHH-HHH-HHHHHcCCceEEEecccC
Confidence 45677789999999973 3444 3556699999999998 888653222223332 222 334566777776632
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 358 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~ 358 (466)
.+++. + |+++ |++|.+.+..|.+|.+.|. +++ +|+++++|.+++.+...-... ..|+++.|.+|+
T Consensus 127 g~~~~~~~~--~-l~~~-t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K~ 195 (361)
T 3m5u_A 127 SNFDHIPRV--E-FSDN-ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-NIALFYGGVQKN 195 (361)
T ss_dssp TTSCSCCCC--C-CCTT-SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-TEEEEEEETTTT
T ss_pred cCCCcCChh--h-cCCC-CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-cCCEEEEechhc
Confidence 24454 3 7764 9999998888888998762 333 499999999987654321222 368999999999
Q ss_pred cccccCceEEEEEeChHHHHHHHH--------HHH--HhC---CCchHHHHHHHHHhhHH------HHHHHHHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRN--------LHH--VLG---GALNPNAAYLIIRGMKT------LHLRVQQQNSTALR 419 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~--------~~~--~~G---~~ls~~~A~l~lrgL~t------l~~R~e~~~~na~~ 419 (466)
+|++| .|+++.++++.+++.. +.. ..+ .+.+....+.+..+++. ++.+.+++.+.+++
T Consensus 196 ~gp~G---~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~ 272 (361)
T 3m5u_A 196 AGISG---LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATM 272 (361)
T ss_dssp SSCTT---CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCc---cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 97555 5888888888776643 110 011 23333333333333332 44455667778888
Q ss_pred HHHHHHcCCCc
Q 012321 420 MAKILEAHPKV 430 (466)
Q Consensus 420 La~~L~~~p~V 430 (466)
+.+.|++.+++
T Consensus 273 l~~~L~~~~g~ 283 (361)
T 3m5u_A 273 LYECIDLSNGF 283 (361)
T ss_dssp HHHHHHTSTTS
T ss_pred HHHHHHHCCCe
Confidence 99999988865
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9e-13 Score=135.90 Aligned_cols=205 Identities=13% Similarity=0.021 Sum_probs=133.6
Q ss_pred chhHHHHHHHHHhhhCCC--c-EEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--
Q 012321 209 NPTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~-~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-- 282 (466)
....++.++.+++++|++ . .+++ ++|++++++++..++++||+|++....+.+.. +. ..+++.| ++++++.
T Consensus 71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~-~~-~~a~~~G-~v~~v~~~~ 147 (386)
T 3qm2_A 71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS-AI-KEAKKYC-APQIIDAKI 147 (386)
T ss_dssp --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH-HH-HHHTTTS-EEEEEECEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH-HH-HHHHHhC-CeEEEecCc
Confidence 456788899999999974 2 4553 58889999999999999999876555555433 22 3456677 7766543
Q ss_pred ------CCHHHHHHhccCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEec
Q 012321 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (466)
Q Consensus 283 ------~D~e~Le~ai~~~~tklV~lesPsNPtG~v-~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S 354 (466)
.++++++.+++++ |++|++.+-.|.+|.+ .|+++|. +|+++++|.+++.+.. .+..++ |+++.|
T Consensus 148 ~~~G~~~~~~~~~~~l~~~-t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~--~~~~~s 219 (386)
T 3qm2_A 148 TVDGKRAVKPMREWQLSDN-AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY--GVIYAG 219 (386)
T ss_dssp EETTEEEECCGGGCCCCTT-CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC--SEEEEE
T ss_pred ccCCCCCCchHHHhhcCCC-CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc--CEEEEe
Confidence 2457777788774 9999998878888996 8888885 7999999999876533 333344 478899
Q ss_pred cccccccccCceEEEEEeChHHHHHHH----------HHH---HHhCCCchHHHHHHHHHhhHH------HHHHHHHHHH
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIR----------NLH---HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNS 415 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~----------~~~---~~~G~~ls~~~A~l~lrgL~t------l~~R~e~~~~ 415 (466)
.+|++|++| .|+++.++++++++. ... ...| +.+....+.+..+++. ++.+.++..+
T Consensus 220 ~hK~lGP~G---~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~ 295 (386)
T 3qm2_A 220 AQKNIGPAG---LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQ 295 (386)
T ss_dssp TTTTTCCTT---EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cccccCCCc---cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999997555 577777666532211 000 0111 1111111211222222 4445566677
Q ss_pred HHHHHHHHHHcCC
Q 012321 416 TALRMAKILEAHP 428 (466)
Q Consensus 416 na~~La~~L~~~p 428 (466)
.++++.+.|++.+
T Consensus 296 l~~~l~~~l~~~~ 308 (386)
T 3qm2_A 296 KAELLYGVIDNSD 308 (386)
T ss_dssp HHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCC
Confidence 8888888888763
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=129.57 Aligned_cols=215 Identities=15% Similarity=0.132 Sum_probs=142.9
Q ss_pred CchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhh--cccCCcEEEEeCC
Q 012321 208 GNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV--LPKMGITATVIDP 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~--l~~~gi~v~~vd~ 282 (466)
.++...+|+++|+++... +.+.+++||++|+..++.... ...++||....+|.+........ -......+..++.
T Consensus 125 ~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~ 204 (454)
T 4ao9_A 125 HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY 204 (454)
T ss_dssp EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT
T ss_pred CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC
Confidence 356677899999998754 777888999999999887553 34578999888888732110000 0112234555677
Q ss_pred CCHHHHHHhccCC--CceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CCccchhccCCcEEE
Q 012321 283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQKALSLGADLVL 352 (466)
Q Consensus 283 ~D~e~Le~ai~~~--~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~----~~~~~pl~~gaDivv 352 (466)
.|++.+++.++++ ++.+|++|......|.+.+ +++|.++|++||++||+||++.. ...+.....-.|+++
T Consensus 205 nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t 284 (454)
T 4ao9_A 205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT 284 (454)
T ss_dssp TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE
T ss_pred chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE
Confidence 8999999888642 4889999988877888876 89999999999999999999752 111222233458875
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHH--HHhCCC--chHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA--LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~~~G~~--ls~~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~ 426 (466)
+.|.++|.- ..|++++++++++.+.... ...+++ .+|..+..++..|+.+ +..+++..++.++|.+.|++
T Consensus 285 --~gK~lggG~--Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 285 --LGKYIGGGM--SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA 360 (454)
T ss_dssp --EEGGGGTTS--SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --eccccCCCC--cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 789998753 4688889999887664211 012222 3466555555555443 23345555666666665544
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-09 Score=112.99 Aligned_cols=214 Identities=15% Similarity=0.101 Sum_probs=130.0
Q ss_pred CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchH-HHHHhhcc---------c
Q 012321 208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTR-IFIETVLP---------K 272 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~-~~~~~~l~---------~ 272 (466)
.++...+|.++|.++... +.+++++||++|+..++... .....+|+.....|++.. ..+...-. .
T Consensus 105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p 184 (456)
T 4atq_A 105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP 184 (456)
T ss_dssp CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence 355667888999998753 45778899999999988643 234578998888887743 22211110 0
Q ss_pred CCcEEEEeCC-----------CCHH-------HHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEE
Q 012321 273 MGITATVIDP-----------ADME-------GLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC 330 (466)
Q Consensus 273 ~gi~v~~vd~-----------~D~e-------~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillI 330 (466)
....+..++. .+.+ .+++.+..+++.+|++|....-.|.+.+ +++|.++|++||++||
T Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI 264 (456)
T 4atq_A 185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFI 264 (456)
T ss_dssp CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred ccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceE
Confidence 1112333321 1222 2333333445899999988776777654 8999999999999999
Q ss_pred EeCCCCC----CCc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012321 331 IDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK 404 (466)
Q Consensus 331 vD~t~a~----~~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~ 404 (466)
+||++.. +.+ +.....-.||++ +.|.++|.. ..|.+++++++++.+..........-+|..+..++..|+
T Consensus 265 ~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggg~--P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~ 340 (456)
T 4atq_A 265 ADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAGGL--PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAID 340 (456)
T ss_dssp EECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred ecccccccCCccccccccccCCCCchhh--hhhcccCcC--CceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence 9999643 222 233333468887 469887653 567888888887765432211112235666666666665
Q ss_pred HHHH--HHHHHHHHHHHHHHHHH
Q 012321 405 TLHL--RVQQQNSTALRMAKILE 425 (466)
Q Consensus 405 tl~~--R~e~~~~na~~La~~L~ 425 (466)
.+.. .+++..+..+++.+.|+
T Consensus 341 ~i~~~~l~~~~~~~g~~l~~~L~ 363 (456)
T 4atq_A 341 TMEQHDLNGRARHIEELALGKLR 363 (456)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHH
Confidence 5532 23333333444444433
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.15 E-value=9.3e-09 Score=108.63 Aligned_cols=226 Identities=14% Similarity=0.124 Sum_probs=139.8
Q ss_pred CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCccch-HHHHHhhc----cc
Q 012321 208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKT-RIFIETVL----PK 272 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all-------~pG-D~VLv~~~~y~~t-~~~~~~~l----~~ 272 (466)
.++...+|.++|.++.+. +.+.+.+||++|+..++.... +++ .+||.....|++. ...+...- ..
T Consensus 109 ~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~ 188 (473)
T 4e3q_A 109 MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSV 188 (473)
T ss_dssp EEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGG
T ss_pred cCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccc
Confidence 356677889999998753 678888999999999887532 122 5788888888773 22221110 01
Q ss_pred CC---cEEEEeCCC----------C--------HHHHHHhcc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012321 273 MG---ITATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (466)
Q Consensus 273 ~g---i~v~~vd~~----------D--------~e~Le~ai~---~~~tklV~lesPsNPtG~v~d----l~~I~ela~~ 324 (466)
++ .....++.. . .+++++.+. .+++.+|++|....-.|.+.+ +++|.++|++
T Consensus 189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~ 268 (473)
T 4e3q_A 189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK 268 (473)
T ss_dssp GTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred cCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc
Confidence 11 112222211 1 234444443 224789999988876777653 8999999999
Q ss_pred cCCEEEEeCCCCCC----Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHH-----hCC--Cc
Q 012321 325 KGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-----LGG--AL 391 (466)
Q Consensus 325 ~gillIvD~t~a~~----~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~-----~G~--~l 391 (466)
+|++||.||++... .+ +.....-.||++ +.|.+++.. ...|.+++++++.+.+...... .|. .-
T Consensus 269 ~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~-~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~G 345 (473)
T 4e3q_A 269 YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGF-FPMGAVILGPELSKRLETAIEAIEEFPHGFTASG 345 (473)
T ss_dssp TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTT
T ss_pred cceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCC-CCcccccccHHHHHHhccccccccccccCCCCCC
Confidence 99999999996532 11 222333468886 679998753 3468888999998887653321 122 23
Q ss_pred hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCcEEEeCC
Q 012321 392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYP 436 (466)
Q Consensus 392 s~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~---~~p~V~~V~~P 436 (466)
+|..+..++..|+.+.. .+++..+...+|.+.|+ ++|.|..|+--
T Consensus 346 npla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~ 395 (473)
T 4e3q_A 346 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGI 395 (473)
T ss_dssp CHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred CcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeec
Confidence 57777666666665542 23444445555555444 46777666433
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=120.76 Aligned_cols=226 Identities=13% Similarity=0.116 Sum_probs=139.3
Q ss_pred CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc-----cCC------------CEEEEcCCCccc-hHHH
Q 012321 207 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-----PAG------------GHIVTTTDCYRK-TRIF 265 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g---~e~~v~~~SG~aAi~~al~all-----~pG------------D~VLv~~~~y~~-t~~~ 265 (466)
+.++...+|.++|+++.+ .+.+++++||++|+..++...+ ..| .+||..+..|++ +...
T Consensus 421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga 500 (831)
T 4a0g_A 421 NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA 500 (831)
T ss_dssp EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceee
Confidence 346778899999999987 3678889999999998887542 122 368888888876 3333
Q ss_pred HHhhc----c---------cCCc-------------EEEEeC------------CCC------------------HHHHH
Q 012321 266 IETVL----P---------KMGI-------------TATVID------------PAD------------------MEGLE 289 (466)
Q Consensus 266 ~~~~l----~---------~~gi-------------~v~~vd------------~~D------------------~e~Le 289 (466)
+...- + ..+. .....+ ..+ .+.|+
T Consensus 501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 580 (831)
T 4a0g_A 501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS 580 (831)
T ss_dssp HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence 32110 0 0010 000011 011 25677
Q ss_pred Hhcc-------CCCceEEEEeCC-CCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CCcc--chhccCCcEE
Q 012321 290 AALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQ--KALSLGADLV 351 (466)
Q Consensus 290 ~ai~-------~~~tklV~lesP-sNPtG~v~d----l~~I~ela~~~gillIvD~t~a~----~~~~--~pl~~gaDiv 351 (466)
+.|+ ..++.+|++|.. .+..|.+.. +++|.++|++||++||+||++.. +... .......|++
T Consensus 581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii 660 (831)
T 4a0g_A 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA 660 (831)
T ss_dssp HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE
T ss_pred HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE
Confidence 7775 234889999986 777787764 89999999999999999998652 2111 1222235777
Q ss_pred EeccccccccccCceEEEEEeChHHHHHHHHHHH----HhC--CCchHHHHHHHHHhhHHHHH--HHHHHHHH-------
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----VLG--GALNPNAAYLIIRGMKTLHL--RVQQQNST------- 416 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~----~~G--~~ls~~~A~l~lrgL~tl~~--R~e~~~~n------- 416 (466)
+++|.++|. -+..|++++++++++.+..... ..| ...+|..+..++..|+.+.. ..++..++
T Consensus 661 --tlsK~L~gG-~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~ 737 (831)
T 4a0g_A 661 --CFAKLLTGG-MVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL 737 (831)
T ss_dssp --EECGGGGTT-SSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCC
T ss_pred --EEecccccC-ccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 588999873 2356889999999887653211 122 23467777766666665431 11111111
Q ss_pred -HHHHHHHHHcCCCcEEEeC
Q 012321 417 -ALRMAKILEAHPKVKRVHY 435 (466)
Q Consensus 417 -a~~La~~L~~~p~V~~V~~ 435 (466)
.+.+.+.|+++|.|..|.-
T Consensus 738 l~~~l~~~l~~~~~v~~vrg 757 (831)
T 4a0g_A 738 WDEELVQQISSHSAVQRVVV 757 (831)
T ss_dssp SCHHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHhhCCCceeEee
Confidence 1235566778888877753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 466 | ||||
| d1qgna_ | 398 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C | 9e-82 | |
| d1y4ia1 | 397 | c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci | 4e-76 | |
| d1gc0a_ | 392 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom | 1e-68 | |
| d2ctza1 | 421 | c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry | 2e-62 | |
| d1e5ea_ | 394 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 4e-57 | |
| d1ibja_ | 380 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale | 3e-53 | |
| d1cs1a_ | 384 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E | 1e-50 | |
| d1n8pa_ | 393 | c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba | 1e-48 | |
| d1pffa_ | 331 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 8e-47 | |
| d1cl1a_ | 391 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche | 4e-41 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 3e-23 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-10 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 1e-07 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 4e-07 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 2e-06 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 3e-06 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 2e-04 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 0.002 |
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 256 bits (654), Expect = 9e-82
Identities = 277/316 (87%), Positives = 301/316 (95%)
Query: 147 ASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGR 206
ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGR
Sbjct: 4 ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGR 63
Query: 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI 266
YGNPTTVV+EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFI
Sbjct: 64 YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI 123
Query: 267 ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 326
ET+LPKMGITATVIDPAD+ LE ALN V+LFFTESPTNPFLRCVD++LVS LCH+KG
Sbjct: 124 ETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKG 183
Query: 327 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV 386
A+VCIDGTFATPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG KLV++IRNLHH+
Sbjct: 184 ALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI 243
Query: 387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 446
LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+ILEAHPKV+ V+YPGL+SHPEHHI
Sbjct: 244 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI 303
Query: 447 ATQQMTGFGGVVSFEV 462
A +QMTGFGG VSFEV
Sbjct: 304 AKKQMTGFGGAVSFEV 319
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Score = 241 bits (616), Expect = 4e-76
Identities = 117/310 (37%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
+HAG++ T A++TP+ TS + F + + + Y R GNPTT +
Sbjct: 11 QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 68
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
E+K++ LE E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 69 EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 128
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+D E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF
Sbjct: 129 NVRFVDAGKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 187
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
+P Q+ L LGAD+V+HS TK+I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 188 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 247
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+
Sbjct: 248 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSL 307
Query: 454 FGGVVSFEVC 463
GG++SFE+
Sbjct: 308 PGGIISFEIA 317
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Score = 221 bits (565), Expect = 1e-68
Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 5/309 (1%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
AIH G A+ PV T+ + F +A Y R NPT ++
Sbjct: 7 RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 64
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
E +M++LEG E+ + +ASGM A T L L+ G ++ Y T F+ + + G+
Sbjct: 65 EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 124
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+D AD++ LEAA+ + + ESP NP + D+ V+ + K GA V +D T+
Sbjct: 125 KLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 183
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNP 393
TP Q+ L LGADLV+HSATK++ GH D+ AG + GS LV +I + L + G L+P
Sbjct: 184 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 243
Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
+ A L++RG+KTL+LR+ + + A +A+ L P+V+ +HYPGL S P++ +A QQM+
Sbjct: 244 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 303
Query: 454 FGGVVSFEV 462
GG+++FE+
Sbjct: 304 PGGMIAFEL 312
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Score = 207 bits (526), Expect = 2e-62
Identities = 100/342 (29%), Positives = 159/342 (46%), Gaps = 36/342 (10%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
+L +HAG T + P+ T++Y FK + + Y R NPT V
Sbjct: 5 TLQLHAGYE--PEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
+E++++ALEG ++ + ASG +A + L L AG +IV+T + Y T + L ++G
Sbjct: 63 LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
I + AL + ++ ES NP L D++ ++ +KG + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182
Query: 335 FAT-PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 384
F + L+ GA LV HS TK++GGH V+AG+I G L+T+ + +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242
Query: 385 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
H L G AL P A++++ GM+TL LR ++ L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302
Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEV 462
L P+V V+YPGL HP H A + G G V++F +
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGL 344
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Score = 192 bits (487), Expect = 4e-57
Identities = 95/312 (30%), Positives = 164/312 (52%), Gaps = 5/312 (1%)
Query: 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPT 211
+ + IHA + + A P+ TS + F + + + + + Y R GNPT
Sbjct: 4 TPATACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPT 60
Query: 212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271
+E K++ LE E+ V +SGM A +L ++ AG H+++ Y T E L
Sbjct: 61 VSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALT 120
Query: 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
K GI I+ A ++ + N ++F ++ D ++G +V
Sbjct: 121 KFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIA 180
Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG 389
D TF +P+ + G D+V+HSATK+I GH DV+AG I G L+ QIR + + G
Sbjct: 181 DNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240
Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 449
++P+ A+LI RG+ TL++R++ ++ A+++A+ L++HP V++V+YPG + H H IA +
Sbjct: 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKK 300
Query: 450 QMTGFGGVVSFE 461
QM +G +++F
Sbjct: 301 QMRMYGSMITFI 312
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 181 bits (459), Expect = 3e-53
Identities = 93/302 (30%), Positives = 160/302 (52%), Gaps = 14/302 (4%)
Query: 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 210
+S +L ++ + DA++TP+ T+ + E ++Y R GNP
Sbjct: 1 ASVSTLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGPYDYTRSGNP 49
Query: 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270
T +E ++ L+ A+ SGM+A + + L+ G IV D Y + + V+
Sbjct: 50 TRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVV 108
Query: 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
P+ G+ ++ ++ + AA+ L + ESPTNP + D++ +S++ H +GA+V
Sbjct: 109 PRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 167
Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHND-VLAGSISGSGKLVTQIRNLHHVLGG 389
+D + +P+ + L LGAD+V+HSATKFI GH+D + KL ++ L + G
Sbjct: 168 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS 227
Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 449
L P +L +RG+KT+ LR+++Q A ++A L +HP+VK+V+Y GL HP HH+
Sbjct: 228 GLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFS 287
Query: 450 QM 451
Q
Sbjct: 288 QA 289
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Score = 174 bits (442), Expect = 1e-50
Identities = 97/309 (31%), Positives = 157/309 (50%), Gaps = 12/309 (3%)
Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
+A+ +G + P+ +S Y F E + +Y R GNPT VV
Sbjct: 6 IAVRSGLN--DDEQYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRDVV 55
Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
+ ++ LEG V+ +GMSA ++ + G +V DCY + +++ +
Sbjct: 56 QRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 115
Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
+D D + L AA L ESP+NP LR VD+ + L + GA+ +D TF
Sbjct: 116 RVLFVDQGDEQALRAA-LAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 174
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPN 394
+P Q L+LGADLVLHS TK++ GH+DV+AG + +VT++ + +G
Sbjct: 175 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAF 234
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
+YL++RG++TL R++ A + K L+ P VK++++P L + H IA +Q GF
Sbjct: 235 DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGF 294
Query: 455 GGVVSFEVC 463
G ++SFE+
Sbjct: 295 GAMLSFELD 303
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 169 bits (428), Expect = 1e-48
Identities = 97/317 (30%), Positives = 159/317 (50%), Gaps = 21/317 (6%)
Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
+ AIHAGE + ++ P+ ++ + A I ++EY R NP
Sbjct: 9 ATKAIHAGEHVDV---HGSVIEPISLSTTFKQSSPANPIG-------TYEYSRSQNPNRE 58
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+E ++ALE A+ + +SG + T +L +P G H V+ D Y T + V
Sbjct: 59 NLERAVAALENAQYGLAFSSGSAT-TATILQSLPQGSHAVSIGDVYGGTHRYFTKVA-NA 116
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV----KLVSDLCHKKGAIV 329
T + L + N L + E+PTNP L+ D+ L+ + I+
Sbjct: 117 HGVETSFTNDLLNDLPQLIKENT-KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175
Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG 388
+D TF +P L+ GAD+V+HSATK+I GH+DV+ G ++ + L +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235
Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEA-HPKVKRVHYPGLKSHPEHHI- 446
+P A+L RG+KTLHLRV+Q +A ++A+ L A V V+YPGLK+HP + +
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295
Query: 447 -ATQQMTGFGGVVSFEV 462
+ GG++SF +
Sbjct: 296 LKQHRDALGGGMISFRI 312
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Score = 162 bits (411), Expect = 8e-47
Identities = 85/252 (33%), Positives = 132/252 (52%), Gaps = 2/252 (0%)
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+E K++ LE AE+ ASGM A + + AG H+++ Y T E L K
Sbjct: 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
G+ ID A +E L N ++F V +K +V +D
Sbjct: 62 GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGAL 391
TFA+P+ L LG D+V+HSATK+I GH DV+AG + ++ ++ + + + G +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
+P+ A+LI RG TL +RV++ A ++A+ L H VK+V+YPGL HP H IA +QM
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241
Query: 452 TGFGGVVSFEVC 463
FG +++F+V
Sbjct: 242 KMFGSMIAFDVD 253
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Score = 149 bits (376), Expect = 4e-41
Identities = 79/309 (25%), Positives = 147/309 (47%), Gaps = 4/309 (1%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTV 213
+ ++AG + A+ + + S+ F + + YGR G T
Sbjct: 4 TQLVNAGRS--KKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHF 61
Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
+++ M LEG V+ G +A +LA + G H++ T Y ++ F +L K+
Sbjct: 62 SLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL 121
Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKLVSDLCHKKGAIVCID 332
G+T + DP + L N +F + + V + + AI+ ID
Sbjct: 122 GVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID 181
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN 392
T+A + KAL G D+ + +ATK++ GH+D + G+ + + Q+R +++G ++
Sbjct: 182 NTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVD 241
Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
+ AY+ RG++TL +R++Q + ++L++A+ L HP+V RV++P L H + T
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT 301
Query: 453 GFGGVVSFE 461
G G+ SF
Sbjct: 302 GSSGLFSFV 310
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 98.4 bits (244), Expect = 3e-23
Identities = 42/269 (15%), Positives = 79/269 (29%), Gaps = 20/269 (7%)
Query: 206 RYGNPTTVVVEEKMSAL-----EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR 260
Y + + L + + V SA +LAL P
Sbjct: 44 TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 103
Query: 261 KTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320
+ + A + + + ++ + + + + + + K V +
Sbjct: 104 PSIERS-----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVIN 158
Query: 321 LCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 375
K AIV +D + AL LGADLV+ S K + G L ++G +
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL---LAGKKE 215
Query: 376 LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRMAKILEAHPKVKRVH 434
LV +I G P I R +K +L R+++ A +
Sbjct: 216 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA 275
Query: 435 YPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
+ T + + +
Sbjct: 276 IDDNINIVYERTPTGFVIKRVYKDDTINI 304
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 61.1 bits (147), Expect = 1e-10
Identities = 45/311 (14%), Positives = 97/311 (31%), Gaps = 21/311 (6%)
Query: 138 EALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK 197
+ LK + + ++ GER R + + ++ L+D + K
Sbjct: 47 KIKLFLKFLSMMDTDKDPKSVRIGEREAR-TYSKIHEELSSGF-CHGIGRSGNLVDPQPK 104
Query: 198 RRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVML-LALVPAGGHIVTTT 256
+ N + K L +++GMS S + ++
Sbjct: 105 ASGASIMYALTNKI-LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPY 163
Query: 257 DCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNN----NVSLFFTESPTNP 308
++ + V M + TV+D +E +E A+ N + P
Sbjct: 164 ASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFP 223
Query: 309 FLRCVDVKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGH 362
D+ ++ +C I+G +A +KA D V+ S+ K +
Sbjct: 224 PRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP 283
Query: 363 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRM 420
S + + +I + A + + M + + V+ Q ++ +
Sbjct: 284 IGG-GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLL 342
Query: 421 AKILEAHPKVK 431
++L K
Sbjct: 343 DELLNDLSKKT 353
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 51.3 bits (122), Expect = 1e-07
Identities = 28/284 (9%), Positives = 71/284 (25%), Gaps = 44/284 (15%)
Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
Y G+ +E+ + L G + V G A ++ + G ++ TR
Sbjct: 71 YA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TR 127
Query: 264 IFIET-------VLPKMGITATVIDPA----DMEGLEAALNNNN-------VSLFFTESP 305
E ++ A++ P D+ L +
Sbjct: 128 FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLA 187
Query: 306 TNPFLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSATKFIGGH 362
+ +++ V ++ G + D T ++ + ++ + + +
Sbjct: 188 GGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY 247
Query: 363 NDVLAGS-------------ISGSGKLVTQIRNL-----HHVLGGALNPNAAYLIIRGMK 404
D S ++ + + L G L + G++
Sbjct: 248 ADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLR 307
Query: 405 TLHLR--VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 446
++ + + L G +
Sbjct: 308 EAMQYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARR 351
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.6 bits (117), Expect = 4e-07
Identities = 47/363 (12%), Positives = 102/363 (28%), Gaps = 39/363 (10%)
Query: 131 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-- 188
G LE L A S++ GER GR + + +V Y F
Sbjct: 23 GWDESTLELF--LHELAVMDSNNFLGNCGVGEREGR------VASALVARRHYRFIHGIG 74
Query: 189 --AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL- 245
++ + K S + N + V + A V+ + + T+ L L
Sbjct: 75 RSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 134
Query: 246 --VPAGGHIVTTTDCYR----------KTRIFIETVLPKMGITATVIDPADMEGLEAALN 293
P +I+ + + IE VL D +E L
Sbjct: 135 HKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD---ELRTDLKAVEAKIQELG 191
Query: 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT------FATPLNQKALSLG 347
++ + + ++ ++ +C ++ L Q+ +G
Sbjct: 192 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251
Query: 348 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMK 404
D + S K A + + I ++ A + + G
Sbjct: 252 RIDAFVQSLDKNFMVPVGG-AIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCS 310
Query: 405 TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP-EHHIATQQMTGFGGVVSFEVC 463
++++ + ++ L+ + +P + + + G ++
Sbjct: 311 GYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLG 370
Query: 464 VFL 466
L
Sbjct: 371 SML 373
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 47.2 bits (111), Expect = 2e-06
Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 32/249 (12%)
Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG--------GHIVTT 255
+ G+ + + E + + G + T+ G A + + L+ +V
Sbjct: 70 FS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAF 127
Query: 256 TDCYRKTRIFIETV---------------LPKMGITATVIDPADMEGLEAALNNNNVSLF 300
++ + T + D +E + NNV
Sbjct: 128 SNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187
Query: 301 FTESPTN----PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT 356
+N + ++K + + K V +D N +
Sbjct: 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE-NAYFIKQREAEYKDWTI 246
Query: 357 KFIGGHNDVLAGSISGSGK--LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
+ I A ++ S K + + L + + +
Sbjct: 247 EQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGL 306
Query: 415 STALRMAKI 423
Sbjct: 307 EGGAMERLA 315
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 47.1 bits (110), Expect = 3e-06
Identities = 31/251 (12%), Positives = 75/251 (29%), Gaps = 15/251 (5%)
Query: 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 267
P + ++ G + + A ++ +L +V +C+ + + E
Sbjct: 45 TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE 104
Query: 268 TVLPKMGITATVIDPADMEGLEA-------ALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320
+ + P E V L P + DVK ++
Sbjct: 105 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 164
Query: 321 LCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379
+C + + ++G +A + +GAD ++ S K + + G + +
Sbjct: 165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI--GVMGMKEEWAEI 222
Query: 380 IRNLHHVLGGALNPN-----AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 434
+ II M + ++ + K +++++
Sbjct: 223 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG 282
Query: 435 YPGLKSHPEHH 445
L +P +H
Sbjct: 283 IKQLGDNPHNH 293
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 198 RRASFEYGRYGN-PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT 256
+A YG PT +E + G E+ + + SG + V ++A G ++
Sbjct: 21 AQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEA 80
Query: 257 DCY 259
D +
Sbjct: 81 DSH 83
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 38.0 bits (87), Expect = 0.002
Identities = 20/199 (10%), Positives = 47/199 (23%), Gaps = 30/199 (15%)
Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------------- 249
Y G+ +++K L + + G A ++ L+
Sbjct: 71 YA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN 128
Query: 250 -------GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 302
H+ D ++ A +N+ +
Sbjct: 129 FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVS 188
Query: 303 ESPTNP----FLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSA 355
N + ++K V ++ + G V +D + + +
Sbjct: 189 TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEV 248
Query: 356 TKFIGGHNDVLAGSISGSG 374
+ + D L S
Sbjct: 249 IFDMYKYADALTMSAKKDP 267
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.9 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.9 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.89 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.88 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.87 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.86 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.85 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.84 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.84 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.84 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.83 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.82 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.82 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.82 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.82 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.81 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.8 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.8 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.8 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.8 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.8 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.79 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.79 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.79 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.78 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.76 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.76 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.75 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.75 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.75 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.75 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.74 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.74 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.74 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.73 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.72 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.72 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.67 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.66 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.65 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.64 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.64 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.63 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.62 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.62 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.6 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.6 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.6 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.6 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.58 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.56 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.54 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.52 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.5 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.45 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.45 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.44 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.42 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.42 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.37 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.37 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.36 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.34 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.33 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.33 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.11 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.1 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.06 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.06 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.05 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.03 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.75 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.68 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.63 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.55 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.1 |
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=4.4e-69 Score=554.74 Aligned_cols=319 Identities=86% Similarity=1.278 Sum_probs=304.9
Q ss_pred hhhccCCCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhC
Q 012321 145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG 224 (466)
Q Consensus 145 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g 224 (466)
+|++|+++..|++||+|+..+++..+++++||||+||||.|++.+++.+.+.++..+|.|+|.+||+++.||++|++++|
T Consensus 2 ~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEg 81 (398)
T d1qgna_ 2 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG 81 (398)
T ss_dssp CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred CccccCCCCccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhC
Confidence 57889999999999999876555567899999999999999999999999999889999999999999999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHh-ccCCCceEEEEe
Q 012321 225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA-LNNNNVSLFFTE 303 (466)
Q Consensus 225 ~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~a-i~~~~tklV~le 303 (466)
++.+++++|||+||.+++++++++||+||+.+..|++++.++...++++|+++.+++..+.++.++. +++ +|++||+|
T Consensus 82 g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~t~~v~~E 160 (398)
T d1qgna_ 82 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE 160 (398)
T ss_dssp CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccc-cceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999997777766654 455 59999999
Q ss_pred CCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHH
Q 012321 304 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL 383 (466)
Q Consensus 304 sPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~ 383 (466)
+|+||++++.|+++|+++||++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++++++++.+++.+
T Consensus 161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~ 240 (398)
T d1qgna_ 161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 240 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEec
Q 012321 384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVC 463 (466)
Q Consensus 384 ~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~ 463 (466)
+..+|..++|+++|+++||++||..||+++++|+..|+++|++||.|++|+||||++||+|+++++||.|+||||||+++
T Consensus 241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~ 320 (398)
T d1qgna_ 241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 320 (398)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred cccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 012321 464 V 464 (466)
Q Consensus 464 ~ 464 (466)
|
T Consensus 321 g 321 (398)
T d1qgna_ 321 G 321 (398)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=7.7e-69 Score=552.43 Aligned_cols=310 Identities=38% Similarity=0.673 Sum_probs=297.8
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+|+|++||+|+.++ ..+++++||||+||||.|++.+++.+.+.+...+|.|+|.+||+++.||++|++++|++.++++
T Consensus 7 ~f~T~~ih~G~~~~--~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~ 84 (397)
T d1y4ia1 7 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT 84 (397)
T ss_dssp CHHHHHHHTTCCCC--TTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeEeCCCCCC--CCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCccceee
Confidence 58999999998753 4578999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+.+++++++++||+||+++..|++++.++...++++|++++++|..|+++++++++++ ||+||+|+|+||++.
T Consensus 85 sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~-Tklv~~Esp~NP~l~ 163 (397)
T d1y4ia1 85 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPE-TKVVYIETPANPTLS 163 (397)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred hHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCC-CcEEEecCCccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999875 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHH--HHHHHhCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG 389 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~--~~~~~~G~ 389 (466)
+.||++|+++||++|++++|||||++|++++|+++|+|||++|+|||++||+|+++|+++++++.+.+++ .++..+|.
T Consensus 164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~ 243 (397)
T d1y4ia1 164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG 243 (397)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887654 55667899
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.++|+++|+++|||+||..||+++++|+.+|+++|++||.|++|+||||++||+|+++++||.|+||||||+++|
T Consensus 244 ~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~ 318 (397)
T d1y4ia1 244 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG 318 (397)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT
T ss_pred cCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=2.2e-68 Score=548.59 Aligned_cols=311 Identities=36% Similarity=0.579 Sum_probs=262.5
Q ss_pred CCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 151 ~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
.+|+|++||+|+.++ ..+++|+||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||++|++++|++.+++
T Consensus 2 ~g~~T~~vH~G~~~~--~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~ 79 (392)
T d1gc0a_ 2 PGFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLA 79 (392)
T ss_dssp CCHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCcchhceeCCCCCC--CCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCcceee
Confidence 368999999997653 457899999999999999999999998888888999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+|+.+++.+++++||+||+++..|++++.+++..++++|++++++|..|+++++++++++ |++||+|+|+||++
T Consensus 80 ~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~-t~lv~~Esp~NP~l 158 (392)
T d1gc0a_ 80 LASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPNM 158 (392)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred hhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCC-CeEEEeccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999985 99999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHH--HHHHHhC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLG 388 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~--~~~~~~G 388 (466)
++.||++|+++||++|++++|||||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+.+++ ..+..+|
T Consensus 159 ~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G 238 (392)
T d1gc0a_ 159 HMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG 238 (392)
T ss_dssp CCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTC
T ss_pred eecchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887664 5677789
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++|+++|+++||++||..||+++++|+++|+++|++||.|++|+||+|++||+|+++++||.++||||||+|++
T Consensus 239 ~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~ 314 (392)
T d1gc0a_ 239 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 314 (392)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred CcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-66 Score=528.67 Aligned_cols=303 Identities=32% Similarity=0.542 Sum_probs=288.2
Q ss_pred CCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 151 ~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
++++|+++|+|...+ ..+++++||||+|+||.|++.+ ...+|.|+|.+||+++.||++|++++|++.+++
T Consensus 1 ~k~~T~~vh~G~~~~--~~~gav~pPI~~sst~~~~~~~--------~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~ 70 (384)
T d1cs1a_ 1 RKQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVL 70 (384)
T ss_dssp CCHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CChhhheeeCCCCCC--CCCCCccCCccCCCCeecCCCC--------cccCCcccCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 368899999998753 4689999999999999999863 345799999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+||..++.+++++||+|++.+..|++++.++...++++|+++.+++..|.++++++++++ |++||+|+|+||+.
T Consensus 71 ~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~-t~~v~~EspsNP~l 149 (384)
T d1cs1a_ 71 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLL 149 (384)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTC-CSEEEEECSCTTTC
T ss_pred ecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhcccc-ccEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999885 99999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCC
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG 389 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~ 389 (466)
.+.||++|+++||++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++++ +++.++++..+..+|.
T Consensus 150 ~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~ 229 (384)
T d1cs1a_ 150 RVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV 229 (384)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC
T ss_pred eeccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999998885 5667888889999999
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 390 ~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
.++|+++|+++|||+||..||+++++|+..|++||++||.|++|+||||++||+|+++++||.|+||||+|++++
T Consensus 230 ~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~ 304 (384)
T d1cs1a_ 230 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 304 (384)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred ccccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.2e-66 Score=533.05 Aligned_cols=310 Identities=31% Similarity=0.476 Sum_probs=286.0
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+|+|++||+|..++ ..+++++||||+|+||.|++.+++.+.+.+++.+|.|+|.+||+++.||++|++++|++.++++
T Consensus 2 k~~T~~vh~g~~~~--~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~ 79 (421)
T d2ctza1 2 RFETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALAT 79 (421)
T ss_dssp CHHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ChhHhheeCCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 47899999998763 4578999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC-HHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-MEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D-~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
+|||+|+.+++++++++||+||+.+..|++++.++...++++|++++++|..| .+.+++.+++ +|++||+|+|+||++
T Consensus 80 ~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~-~t~li~~EtpsNP~l 158 (421)
T d2ctza1 80 ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPAL 158 (421)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred cChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCC-CceEEEEcCCCccee
Confidence 99999999999999999999999999999999999999999999999998755 4566667776 499999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeCCCC-CCCccchhccCCcEEEeccccccccccCceEEEEEeChH--------------
Q 012321 311 RCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-------------- 375 (466)
Q Consensus 311 ~v~dl~~I~ela~~~gillIvD~t~a-~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e-------------- 375 (466)
++.|+++|+++||++|+++||||||+ +|+.++|+++|+|||++|+|||++||+|+++|+++.+++
T Consensus 159 ~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~ 238 (421)
T d2ctza1 159 NIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEP 238 (421)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred EecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCC
Confidence 99999999999999999999999998 799999999999999999999999999999999997532
Q ss_pred -----------------HHHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCC
Q 012321 376 -----------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 437 (466)
Q Consensus 376 -----------------li~~l~-~~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~Pg 437 (466)
++.+++ ...+.+|..++|+++|+++|||+||..||+++++|+..++++|++||.|++|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPg 318 (421)
T d2ctza1 239 QPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPG 318 (421)
T ss_dssp BGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred chhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCC
Confidence 122222 34456899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHhhcC-CcceEEEEEece
Q 012321 438 LKSHPEHHIATQQMT-GFGGVVSFEVCV 464 (466)
Q Consensus 438 L~s~p~~~l~~~~~~-g~Ggl~sfel~~ 464 (466)
|++||+|+++++||. ++|+||||+++|
T Consensus 319 L~s~p~~~~a~~~~~g~~G~~~sf~l~~ 346 (421)
T d2ctza1 319 LPHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp STTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred cCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 999999999999996 579999999985
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=3.4e-65 Score=525.93 Aligned_cols=309 Identities=33% Similarity=0.588 Sum_probs=293.2
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|++||+|..++ .+++++||||+||||.|++.+++.+.+.+...+|.|+|.+||+++.||++|++++|++.++++
T Consensus 4 ~~~T~~vh~g~~~d---~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~ 80 (394)
T d1e5ea_ 4 TPATACIHANPQKD---QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 80 (394)
T ss_dssp CHHHHHHHSSCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHheeCCCCCC---CCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeee
Confidence 47899999997642 478999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+|+..++++++++||+|++.+..|++++.++...++++|++++++|..|+++++++++++ |++||+|+|+||++.
T Consensus 81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~-t~lv~~Etp~NP~l~ 159 (394)
T d1e5ea_ 81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLK 159 (394)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred ccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhccc-ccEEEEeccCCccee
Confidence 9999999999999999999999999999999999999999999999999999999999999885 999999999999999
Q ss_pred cccHHHHHHHHHh-cCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHH--HHHHhC
Q 012321 312 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLG 388 (466)
Q Consensus 312 v~dl~~I~ela~~-~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~--~~~~~G 388 (466)
+.|++++++++++ +|+++|+|+||++|++++|+++|+|||++|+|||++||+|+++|+++++++.+..++. ++..+|
T Consensus 160 v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G 239 (394)
T d1e5ea_ 160 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG 239 (394)
T ss_dssp CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred eehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhC
Confidence 9999999987764 7899999999999999999999999999999999999999999999999988876654 345689
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++|++||+++|||+||..||+++++|+..|++||++||+|++|+||||++||+|+++++||+|+|||+||++++
T Consensus 240 ~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~ 315 (394)
T d1e5ea_ 240 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS 315 (394)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-65 Score=525.85 Aligned_cols=310 Identities=27% Similarity=0.460 Sum_probs=295.3
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccC-CCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRA-SFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~-~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
+++|+++|+|+.++ ..+++++||||+||||.|++.++..+.+.+... .|.|+|.+||+++.||++|++++|++.+++
T Consensus 1 k~~T~~vh~g~~~~--~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~ 78 (391)
T d1cl1a_ 1 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL 78 (391)
T ss_dssp CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcccceecCCCCCC--CCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEE
Confidence 57899999997652 357899999999999999999988877766554 589999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+||.+++++++++||+||+.+..|++++.+++..++++|+++.++|..|.++++++++++ |++||+|+|+||+.
T Consensus 79 ~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~-t~~i~~EtpsNP~l 157 (391)
T d1cl1a_ 79 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM 157 (391)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTT-EEEEEEESSCTTTC
T ss_pred eccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccc-cceeeecccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999885 99999999999999
Q ss_pred ccccHHHHHHHHHh--cCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC
Q 012321 311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG 388 (466)
Q Consensus 311 ~v~dl~~I~ela~~--~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G 388 (466)
.+.|+++|+++|++ +|+++||||||++|++++|+++|+|||++|+|||++||+|+++|++++++++.++++..+..+|
T Consensus 158 ~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G 237 (391)
T d1cl1a_ 158 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG 237 (391)
T ss_dssp CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhhhccc
Confidence 99999999999976 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 389 ~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
..++|++||+++||++||..||+++++|+.+|+++|++||.|++|+||||++||+|+++++||+|+|||+||++++
T Consensus 238 ~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 313 (391)
T d1cl1a_ 238 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK 313 (391)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred ccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.3e-64 Score=514.57 Aligned_cols=300 Identities=33% Similarity=0.599 Sum_probs=284.4
Q ss_pred CccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012321 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (466)
Q Consensus 152 ~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~ 231 (466)
+++|+++|+|...+ .+++++||||+||||.|++. ....+|.|+|.+||+++.||++|++++|++.++++
T Consensus 2 ~~~t~~~h~~~~~d---p~ga~~~PI~~sstf~~~~~--------~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~f 70 (380)
T d1ibja_ 2 SVSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSA--------IENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF 70 (380)
T ss_dssp CHHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSS--------SCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHhHhhhcCCCCCC---CCCCccCCccCCcceecCCC--------CccCCceeeCCCChHHHHHHHHHHHHcCCceEEeh
Confidence 47899999998753 37899999999999999985 33568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcc
Q 012321 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (466)
Q Consensus 232 ~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~ 311 (466)
+|||+||. ++.+++++||+||+.++.|++++.+++..++++|+++.+++..|+++++++++++ |++||+|+|+||++.
T Consensus 71 sSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~-t~li~~EtpsNP~l~ 148 (380)
T d1ibja_ 71 TSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQ 148 (380)
T ss_dssp SSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSS-EEEEEECSSCTTTCC
T ss_pred hhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccC-ccEEEeccccccccc
Confidence 99999996 5678999999999999999999999999999999999999999999999999885 999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCC
Q 012321 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA 390 (466)
Q Consensus 312 v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ 390 (466)
+.|+++|+++||++|+++||||||++|+.++|+++|+|||++|+|||++||+|+++|+++.+ +++.++++..+..+|..
T Consensus 149 v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~ 228 (380)
T d1ibja_ 149 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG 228 (380)
T ss_dssp CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred cccHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999998776 56788899999999999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhhcCCcceEEEEEece
Q 012321 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVCV 464 (466)
Q Consensus 391 ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~~~g~Ggl~sfel~~ 464 (466)
++|+++|+++||++||..||+++++|+.++++||++||.|++|+||||++||+|+++++||+++|||++|++++
T Consensus 229 l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~ 302 (380)
T d1ibja_ 229 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS 302 (380)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred CCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998865
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-62 Score=503.24 Aligned_cols=301 Identities=33% Similarity=0.561 Sum_probs=279.4
Q ss_pred CCccccccccCCcCCCCCCCCCccCCccccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEE
Q 012321 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (466)
Q Consensus 151 ~~~~t~~v~~g~~~~~~~~~~~v~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~ 230 (466)
.+|+|++||+|+.++ .+++++||||+|+||.|++.+ ....+|.|+|.+||+++.||++|++++|++.+++
T Consensus 6 ~~f~T~~vHag~~~d---~~gav~pPI~~ssTf~~~~~~-------~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~ 75 (393)
T d1n8pa_ 6 DKFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLA 75 (393)
T ss_dssp CCHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCcchheEECCCCCC---CCCCccCCcCCCCceecCCcc-------cccCCeeeeCCCChHHHHHHHHHHHHhCCceEEE
Confidence 358999999997652 478999999999999999863 3456799999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCc
Q 012321 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (466)
Q Consensus 231 ~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG 310 (466)
++|||+|+.++ ..++.+||+|++....|++++.++...++++|+++.+++. +.++++++++++ |++||+|+|+||++
T Consensus 76 ~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~-t~lv~~EspsNP~l 152 (393)
T d1n8pa_ 76 FSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKEN-TKLVWIETPTNPTL 152 (393)
T ss_dssp ESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSS-EEEEEECSSCTTTC
T ss_pred ecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhh-cceeEecCcchhhh
Confidence 99999999755 5778999999999999999999999999999999999884 568999999885 99999999999999
Q ss_pred ccccHHHHHHHHH----hcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHH
Q 012321 311 RCVDVKLVSDLCH----KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH 385 (466)
Q Consensus 311 ~v~dl~~I~ela~----~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~ 385 (466)
++.|+++|+++|| ++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++.+ +++.++++..+.
T Consensus 153 ~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~ 232 (393)
T d1n8pa_ 153 KVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN 232 (393)
T ss_dssp CCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH
T ss_pred hccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHh
Confidence 9999999999999 68999999999999999999999999999999999999999999998765 567889999999
Q ss_pred HhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEeCCCCCCCcchHHHHhhcC--CcceEEEEEe
Q 012321 386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMT--GFGGVVSFEV 462 (466)
Q Consensus 386 ~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~-p~V~~V~~PgL~s~p~~~l~~~~~~--g~Ggl~sfel 462 (466)
.+|..++|+++|+++||++||..||+++++|+++|+++|++| |.|++|+||+|++||+|+++++||. ++||||||+|
T Consensus 233 ~~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l 312 (393)
T d1n8pa_ 233 AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRI 312 (393)
T ss_dssp HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEE
T ss_pred hcCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999999987 8899999999999999999999995 5799999999
Q ss_pred ce
Q 012321 463 CV 464 (466)
Q Consensus 463 ~~ 464 (466)
+|
T Consensus 313 ~~ 314 (393)
T d1n8pa_ 313 KG 314 (393)
T ss_dssp SS
T ss_pred eC
Confidence 86
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=100.00 E-value=6.9e-53 Score=425.17 Aligned_cols=250 Identities=36% Similarity=0.627 Sum_probs=238.5
Q ss_pred HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhcc
Q 012321 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 293 (466)
Q Consensus 214 ~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~Le~ai~ 293 (466)
+||++|++++|++.+++++|||+||..++++++++||+||++++.|++++.+++..++++|++++++|..|++.++++++
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~ 81 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEeCCCCCCcccccHHHHHHHH-HhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccccccCceEEEEEe
Q 012321 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLC-HKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372 (466)
Q Consensus 294 ~~~tklV~lesPsNPtG~v~dl~~I~ela-~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg 372 (466)
++ |++||+|+|+||+..+.|++++++++ |++|+++|||+|+++|+.++|+++|+|||++|+|||++||+|+++|++++
T Consensus 82 ~~-t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~ 160 (331)
T d1pffa_ 82 PN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS 160 (331)
T ss_dssp TT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred cc-cceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccc
Confidence 85 99999999999999999999999985 67899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHH--HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCCCCCcchHHHHhh
Q 012321 373 SGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450 (466)
Q Consensus 373 ~~eli~~l~~--~~~~~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL~s~p~~~l~~~~ 450 (466)
+++.+.+.+. .+..+|..++|+++|+++||++|+..||+++++|+..++++|++||.|++|+||||++||+|++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~ 240 (331)
T d1pffa_ 161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240 (331)
T ss_dssp CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred cccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhc
Confidence 9877666543 34567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEece
Q 012321 451 MTGFGGVVSFEVCV 464 (466)
Q Consensus 451 ~~g~Ggl~sfel~~ 464 (466)
+.++|||+||++++
T Consensus 241 ~~~~g~l~sf~l~~ 254 (331)
T d1pffa_ 241 MKMFGSMIAFDVDG 254 (331)
T ss_dssp CSSCCSEEEEECSS
T ss_pred ccccCcccceeecc
Confidence 99999999999986
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=1.4e-23 Score=208.63 Aligned_cols=214 Identities=14% Similarity=0.247 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------
Q 012321 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~------- 282 (466)
|..+.+|+.+|+++|.++++++++|++|+.+++.+++++||+||++.++|.+.+.. +...|.++.+++.
T Consensus 47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~----~~~~g~~v~~v~~~~~~~~~ 122 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYA 122 (364)
T ss_dssp CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCC
T ss_pred HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchH----HHhccceEEEeeeccccccc
Confidence 46788999999999999999999999999999999999999999999999886643 3456888877753
Q ss_pred CCHHHHHHhccCC----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccc
Q 012321 283 ADMEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ~D~e~Le~ai~~~----~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK 357 (466)
.|++++++++++. ++++|++++|+||+|.+.|+++|+++|++||+++++|++|+.+.. .+..++|+|+++.|+||
T Consensus 123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K 202 (364)
T d2e7ja1 123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK 202 (364)
T ss_dssp CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHH
T ss_pred cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeecccc
Confidence 3688999888532 367999999999999999999999999999999999999987643 45556799999999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHHH--------HhCCCchHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHc
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAKILEA 426 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~~--------~~G~~ls~~~A~l~lrgL~tl~~---R~e~~~~na~~La~~L~~ 426 (466)
++++++ .+|++++++++++.+..... ..+........+.+..+++.+.. ++.+..++++++.+.|++
T Consensus 203 ~~~~~g--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (364)
T d2e7ja1 203 SMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEK 280 (364)
T ss_dssp HSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred ccCCCC--CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 46899999887765432211 11222222223333344444333 334445677788888887
Q ss_pred CCC
Q 012321 427 HPK 429 (466)
Q Consensus 427 ~p~ 429 (466)
.+.
T Consensus 281 ~g~ 283 (364)
T d2e7ja1 281 LGI 283 (364)
T ss_dssp TTC
T ss_pred cCC
Confidence 653
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=2.2e-24 Score=218.05 Aligned_cols=202 Identities=21% Similarity=0.209 Sum_probs=161.7
Q ss_pred HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEE-EEc-CCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHI-VTT-TDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 212 ~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all~pGD~V-Lv~-~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
.+.+++..++.++. ++++++++|++|+..++.++.+ ||.| +++ .+.|+.....+ +..|+++ ++..|++
T Consensus 52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~-~~~vi~~~~~~~~~~~~~~~----~l~g~~~--v~~~d~e 124 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKP-KKVIHYLPELPGHPSIERSC----KIVNAKY--FESDKVG 124 (366)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCC-SEEEEECSSSSCCTHHHHHH----HHTTCEE--EEESCHH
T ss_pred HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCC-CCEEEEecCCCcchhHHHHH----HhcCCeE--ECCCCHH
Confidence 45677766666653 5678888899999999988764 5555 444 47888765443 3346653 5667999
Q ss_pred HHHHhccCCCceEEEEeCCCCCC-cccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----cchhccCCcEEEeccccccc
Q 012321 287 GLEAALNNNNVSLFFTESPTNPF-LRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 287 ~Le~ai~~~~tklV~lesPsNPt-G~v~dl~~I~ela~~~gillIvD~t~a~~~~-----~~pl~~gaDivv~S~sK~lg 360 (466)
+|+++|+++ |++|++++|+||+ +.+.|+++|+++|+++|+++++|++|+.++. ..+...|+|++++|+||+++
T Consensus 125 ~l~~~i~~~-tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~ 203 (366)
T d2aeua1 125 EILNKIDKD-TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 203 (366)
T ss_dssp HHHTTCCTT-EEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS
T ss_pred HHHHhcCCC-ceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccc
Confidence 999999985 9999999999874 5678999999999999999999999876432 23457799999999999999
Q ss_pred cccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH-LRVQQQNSTALRMAKIL 424 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~-~R~e~~~~na~~La~~L 424 (466)
|+. +|+++++++++++++.....+|.+++++.+|+++++|+++. .|++++.++++.++..+
T Consensus 204 g~~---~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~ 265 (366)
T d2aeua1 204 GPR---GGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSK 265 (366)
T ss_dssp SCS---CEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_pred ccc---eeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 874 79999999999999999988999999999999999999874 47888888877654443
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.89 E-value=7.7e-22 Score=200.34 Aligned_cols=216 Identities=14% Similarity=0.202 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
+.++++.+++.+..|. ++.+++++|+ +++..++.+++++||+|++++|+|......+. ..|..+..+.
T Consensus 71 ~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~----~~~~~~v~~~~~~~ 146 (388)
T d1j32a_ 71 RLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK----LAEGTPVILPTTVE 146 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH----HTTCEEEEECCCGG
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH----HhcCeEEEEecccc
Confidence 4455556666555563 3445556665 99999999999999999999999998665443 2344444433
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----hh------c
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL------S 345 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----pl------~ 345 (466)
..|+++++++++++ ++++++++|+||||.+++ +++|+++|+++|+++|+||+|....... ++ .
T Consensus 147 ~~~~~d~~~l~~~~~~~-~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~ 225 (388)
T d1j32a_ 147 TQFKVSPEQIRQAITPK-TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEA 225 (388)
T ss_dssp GTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred cccCCCHHHHHHhCCCC-CeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCccc
Confidence 24799999999875 999999999999999986 6788888999999999999986533211 11 1
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHH----hhHHHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lr----gL~tl~~R~e~~~~na~~La 421 (466)
....+++.|+||.++.+| .+.||+++++++++.+.+.........+....+.+.. +.+.+....+...++.+.+.
T Consensus 226 ~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
T d1j32a_ 226 YERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYML 304 (388)
T ss_dssp HHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEecCChhhhhcch-hHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 124589999999999777 4579999999999988877765555555544333322 33456666777888899999
Q ss_pred HHHHcCCCcE
Q 012321 422 KILEAHPKVK 431 (466)
Q Consensus 422 ~~L~~~p~V~ 431 (466)
+.|++++.+.
T Consensus 305 ~~l~~~~g~~ 314 (388)
T d1j32a_ 305 DALNAMPGLE 314 (388)
T ss_dssp HHHHTCTTCB
T ss_pred HHHHhCCCCE
Confidence 9999987653
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=7.4e-21 Score=192.11 Aligned_cols=211 Identities=13% Similarity=0.142 Sum_probs=147.3
Q ss_pred hHHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-----
Q 012321 211 TTVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----- 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~---e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----- 281 (466)
.++++.+++.+..|. ++.+++++| ++|+..++.+++++||.|++++|+|......+ +..|.++..++
T Consensus 73 lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~----~~~g~~~~~v~~~~~~ 148 (382)
T d1b5pa_ 73 LREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMV----RFAGGVVVEVETLPEE 148 (382)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEECCGGG
T ss_pred HHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHH----HHhcCeEEEEeccccc
Confidence 344444444444443 244445555 59999999999999999999999999865443 34566655553
Q ss_pred --CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cchhcc--CCcE
Q 012321 282 --PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL--GADL 350 (466)
Q Consensus 282 --~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~pl~~--gaDi 350 (466)
..|+++++++++++ ++++++++|+||||.+++ +++|+++|+++|+++|+||+|..... ..+... ...+
T Consensus 149 ~~~~d~~~l~~~~~~~-~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i 227 (382)
T d1b5pa_ 149 GFVPDPERVRRAITPR-TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTL 227 (382)
T ss_dssp TTCCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEE
T ss_pred ccCCCHHHHHHhCCCC-CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEE
Confidence 24899999999875 999999999999999986 67889999999999999999875432 122222 2348
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHH---HHh---h-HHHHHHHHHHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRG---M-KTLHLRVQQQNSTALRMAKI 423 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~---lrg---L-~tl~~R~e~~~~na~~La~~ 423 (466)
++.|+||.|+.+|. +.||+++++++++.+...+.......+......+ +.. . +.+....+.+.++++.+.+.
T Consensus 228 ~~~s~SK~~~~~Gl-R~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (382)
T d1b5pa_ 228 TVNGAAKAFAMTGW-RIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEG 306 (382)
T ss_dssp EEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhccCcHh-heEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHH
Confidence 99999999987774 5799999999999888777665554444332222 211 1 12233334455566677777
Q ss_pred HHcC
Q 012321 424 LEAH 427 (466)
Q Consensus 424 L~~~ 427 (466)
|.+.
T Consensus 307 l~~~ 310 (382)
T d1b5pa_ 307 LTAL 310 (382)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 7764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=1.3e-20 Score=189.97 Aligned_cols=195 Identities=11% Similarity=0.136 Sum_probs=143.7
Q ss_pred cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-------CCCHHHHHHhccCCCceE
Q 012321 227 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-------PADMEGLEAALNNNNVSL 299 (466)
Q Consensus 227 ~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd-------~~D~e~Le~ai~~~~tkl 299 (466)
+.++++++++++..++.+++.+||+|++++|+|......+ ...|.++..++ ..|+++|+++++++ +++
T Consensus 88 ~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~ 162 (388)
T d1gdea_ 88 EIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK-TRA 162 (388)
T ss_dssp SEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEECCGGGTTCCCHHHHHHHCCTT-EEE
T ss_pred eeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHcCCEEEEeecccccCCCCCHHHHHHhCccC-CeE
Confidence 3444445559999999999999999999999999865443 33466665553 34899999999875 999
Q ss_pred EEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ch-hc----cCCcEEEeccccccccccCceE
Q 012321 300 FFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS----LGADLVLHSATKFIGGHNDVLA 367 (466)
Q Consensus 300 V~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~p-l~----~gaDivv~S~sK~lgG~gdv~g 367 (466)
+++++|+||||.+++ +++|+++|++++++||+||+|...... .+ .. .+..|++.|+||.++.+| .+.
T Consensus 163 i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~ 241 (388)
T d1gdea_ 163 LIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRL 241 (388)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCC
T ss_pred EEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCcc-ccE
Confidence 999999999999985 778999999999999999998754321 11 11 123589999999998777 457
Q ss_pred EEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 368 GSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG------MKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 368 G~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg------L~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
||+++++++++.+...........+......+... .+.+....+.+.++...+.+.|...
T Consensus 242 G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (388)
T d1gdea_ 242 GFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM 307 (388)
T ss_dssp EEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc
Confidence 99999999999888877766655555443333222 2334444455666777788888765
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.86 E-value=7.7e-21 Score=190.95 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=167.0
Q ss_pred CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC
Q 012321 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~ 282 (466)
+......+++++.+|+++|+ ++.+++++|++++..++.++ +++||+|++++..|+++...+....+..|+++.+++.
T Consensus 46 ~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~ 125 (381)
T d1elua_ 46 QHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV 125 (381)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccc
Confidence 33345577889999999997 46777778889999999887 6899999999999999887776667778999988864
Q ss_pred C-------CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc----CCEEEEeCCCCCCCc-cchhccCCcE
Q 012321 283 A-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK----GAIVCIDGTFATPLN-QKALSLGADL 350 (466)
Q Consensus 283 ~-------D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~----gillIvD~t~a~~~~-~~pl~~gaDi 350 (466)
. +.+.++++++++ |++|++++++|+||.+.|+++|.++||++ |+++++|++++.+.. .....+++|+
T Consensus 126 ~~~~~~~~~~~~l~~~i~~~-t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~ 204 (381)
T d1elua_ 126 AATLNQGDAAAVLANHLGPK-TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDY 204 (381)
T ss_dssp GGGSSSSCHHHHHHTTCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSE
T ss_pred ccccccchHHHHHHhhhccc-ccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccccccc
Confidence 2 256677888774 99999999999999999999999999984 699999999886643 3444568999
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHH----------------------HhCCCchHHHHHHHHHhhH---H
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMK---T 405 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~----------------------~~G~~ls~~~A~l~lrgL~---t 405 (466)
++.|++|+++++.. .|+++.++++.+++..... ...++.+....+.+...++ .
T Consensus 205 ~~~s~~K~~~~p~G--~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~ 282 (381)
T d1elua_ 205 YAFTGHKWFAGPAG--VGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR 282 (381)
T ss_dssp EEEESSSTTCCCTT--CEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccch--hhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHH
Confidence 99999999998863 4778777766654421100 0111222222222222222 2
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 406 ---LHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 406 ---l~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
...+.++..++++.+.+.|++.|.+..
T Consensus 283 ~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 312 (381)
T d1elua_ 283 QGTAEERYQAICQRSEFLWRGLNQLPHVHC 312 (381)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred hcccccchhhhhhHHHHHHHHHhcCCCeEe
Confidence 345567788889999999999988744
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.6e-20 Score=186.20 Aligned_cols=224 Identities=17% Similarity=0.220 Sum_probs=163.2
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCC-EEEEcCCCccchHHHHHhhcccCCcEEEEe
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD-~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v 280 (466)
..||+++...+|+++||+++|. ++.|++++|+ ++|..++++++.+|| .|+++.|.|...... ....|.++..+
T Consensus 50 l~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~----~~~~g~~v~~~ 125 (354)
T d1fg7a_ 50 LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVS----AETIGVECRTV 125 (354)
T ss_dssp TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHH----HHHHTCEEEEC
T ss_pred HhcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhh----hhccCceeecc
Confidence 5678888889999999999996 4566666776 999999999999998 588899999875533 33456777666
Q ss_pred C-----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHH--HhcCCEEEEeCCCCCCCccch-----hccCC
Q 012321 281 D-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC--HKKGAIVCIDGTFATPLNQKA-----LSLGA 348 (466)
Q Consensus 281 d-----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela--~~~gillIvD~t~a~~~~~~p-----l~~ga 348 (466)
+ ..|+++++.++. ++++|++++|+||||.+.+.+++..++ .+++.++++|++|........ .....
T Consensus 126 ~~~~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~ 203 (354)
T d1fg7a_ 126 PTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH 203 (354)
T ss_dssp CCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred ccccccccchhhhhhccc--ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccccc
Confidence 4 347889988774 489999999999999998755443332 346788999998765432111 12234
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILE 425 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l---~lrgL~tl~~R~e~~~~na~~La~~L~ 425 (466)
.+++.|+||.++.+| .+.||+++++++++.+.+.+..+........... .......+..++++..+.++.+.+.|.
T Consensus 204 ~iv~~S~SK~~~laG-lRiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 282 (354)
T d1fg7a_ 204 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALK 282 (354)
T ss_dssp EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeCCccccCCCc-cccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHH
Confidence 588999999999777 4579999999999998876654443322221111 123344556667777888899999999
Q ss_pred cCCCcEEEe
Q 012321 426 AHPKVKRVH 434 (466)
Q Consensus 426 ~~p~V~~V~ 434 (466)
+.+.+..+.
T Consensus 283 ~~~~~~~~~ 291 (354)
T d1fg7a_ 283 EIPCVEQVF 291 (354)
T ss_dssp HSTTEEEEC
T ss_pred hCCCcceeC
Confidence 999876664
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.9e-20 Score=187.69 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-
Q 012321 210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~al----l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~- 282 (466)
...+++++++|+++|+ ++.++++++++++..++.++ +++||+|++.++.|++....+. .++..|+++..++.
T Consensus 48 ~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~ 126 (391)
T d1p3wa_ 48 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQ 126 (391)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCC
Confidence 3456778999999998 36667777778888877654 5899999999999998776554 35567899988863
Q ss_pred ----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccc
Q 012321 283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (466)
Q Consensus 283 ----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK 357 (466)
.|+++++++++++ |++|++++|+||||.+.|+++|+++||++|+++++|++++.+.. .+....++|+++.|.+|
T Consensus 127 ~~~~~d~~~~~~~i~~~-T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k 205 (391)
T d1p3wa_ 127 RNGIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK 205 (391)
T ss_dssp TTSCCCHHHHHHHCCTT-EEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTT
T ss_pred CCCeEcHHHHHHhCCCC-cEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccc
Confidence 3789999999985 99999999999999999999999999999999999999887643 44456789999999999
Q ss_pred ccccccCceEEEEEeChHHHHHHHHHH--------HHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 358 FIGGHNDVLAGSISGSGKLVTQIRNLH--------HVLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 358 ~lgG~gdv~gG~vvg~~eli~~l~~~~--------~~~G~~ls~~~A~l---~lrgL~tl~~R~e~~~~na~~La~~L~~ 426 (466)
++|+++ .|+++.+++....+.... ...|....+....+ .....+....+.++..+....+.+.|.+
T Consensus 206 ~~g~~g---~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 282 (391)
T d1p3wa_ 206 IYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD 282 (391)
T ss_dssp TTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccCCCc---eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 998776 467766665433222110 01111111111111 1122333444455666677777777877
Q ss_pred CCCc
Q 012321 427 HPKV 430 (466)
Q Consensus 427 ~p~V 430 (466)
.+.+
T Consensus 283 ~~~~ 286 (391)
T d1p3wa_ 283 IEEV 286 (391)
T ss_dssp STTE
T ss_pred hcCe
Confidence 7654
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.84 E-value=1.7e-19 Score=182.99 Aligned_cols=222 Identities=12% Similarity=0.086 Sum_probs=146.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.|.|.....+.++++.+.+++.+|. ++.++++++++++..+++++++|||+|++.+|.|...+..+. ..|..
T Consensus 61 ~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~----~~g~~ 136 (394)
T d1c7na_ 61 VLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK----NQERK 136 (394)
T ss_dssp CCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH----TTTCE
T ss_pred CcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHh----hhhhc
Confidence 4567653333344444444444453 455555566699999999999999999999999988665443 33433
Q ss_pred EEEeC--------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----
Q 012321 277 ATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---- 341 (466)
Q Consensus 277 v~~vd--------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~---- 341 (466)
...++ ..|.+.++..+...++++|++++|+||||.+++ +++|+++|++++++||+||+|......
T Consensus 137 ~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~ 216 (394)
T d1c7na_ 137 IIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH 216 (394)
T ss_dssp EEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred ccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccc
Confidence 33332 146788887775546999999999999999986 667889999999999999998754321
Q ss_pred chh------ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCch-HHH---HHHHHH-hhHHHHHHH
Q 012321 342 KAL------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN-PNA---AYLIIR-GMKTLHLRV 410 (466)
Q Consensus 342 ~pl------~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls-~~~---A~l~lr-gL~tl~~R~ 410 (466)
.+. ....-+++.|+||.++.+|..+|++++.++.+.+.++........... ... +..... ..+.+....
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (394)
T d1c7na_ 217 TVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCI 296 (394)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccc
Confidence 111 113458899999999988876666666667777777776665543322 221 112222 223344444
Q ss_pred HHHHHHHHHHHHHHHc
Q 012321 411 QQQNSTALRMAKILEA 426 (466)
Q Consensus 411 e~~~~na~~La~~L~~ 426 (466)
+...++.+.+.+.|+.
T Consensus 297 ~~~~~~~~~~~~~l~~ 312 (394)
T d1c7na_ 297 KVIDKNQRIVKDFFEV 312 (394)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhc
Confidence 4455566666666664
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=2.5e-19 Score=179.30 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=162.3
Q ss_pred CCCchh-HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 206 RYGNPT-TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 206 R~~~p~-~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
+|+.+. ..+|++.||++++. ++.++++++++++..++.+++.+||.|++++|+|......... .|..+..+.
T Consensus 56 ~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~----~g~~~~~~~~ 131 (368)
T d1v2da_ 56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFL----AGAKARLVRL 131 (368)
T ss_dssp SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHh----cCCccceecc
Confidence 344443 67899999999986 4567777777999999999999999999999999987655432 333333221
Q ss_pred -------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccch------hc
Q 012321 282 -------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA------LS 345 (466)
Q Consensus 282 -------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~p------l~ 345 (466)
..|++.+++++++. +++|++++|+||||.+.+ +++|+++|+++|+++|+|+.|........ ..
T Consensus 132 ~~~~~~~~~d~~~l~~~~~~~-~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~ 210 (368)
T d1v2da_ 132 DLTPEGFRLDLSALEKALTPR-TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA 210 (368)
T ss_dssp EEETTEEECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred ccccccccCCHHHHHHhhccC-ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc
Confidence 24899999999885 999999999999999996 77899999999999999999865332111 12
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG------MKTLHLRVQQQNSTALR 419 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrg------L~tl~~R~e~~~~na~~ 419 (466)
....+++.|++|.++.+|. +.|++++++++++.+.+.+...+...+......+... .+.+....+.+.++++.
T Consensus 211 ~~~~~~~~~~sk~~~~~G~-R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (368)
T d1v2da_ 211 PERTFTVGSAGKRLEATGY-RVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL 289 (368)
T ss_dssp TTTEEEEEEHHHHTTCGGG-CCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccceeeccccccccccc-ccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhh
Confidence 2345888999999988874 5789999999999988888776666555433222222 22345555567788889
Q ss_pred HHHHHHcCC
Q 012321 420 MAKILEAHP 428 (466)
Q Consensus 420 La~~L~~~p 428 (466)
+.+.|+++.
T Consensus 290 l~~~l~~~g 298 (368)
T d1v2da_ 290 LAGGLRAMG 298 (368)
T ss_dssp HHHHHHHTT
T ss_pred hhhhHHhcC
Confidence 999999873
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.83 E-value=6.2e-19 Score=179.07 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
+.++++.+.+.+.+|. ++.++++++++++.+++.+++.+||+|++++|+|+.....+ ...|.++..++
T Consensus 74 ~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~----~~~g~~~v~v~~~~~ 149 (395)
T d1xi9a_ 74 ELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTIEE 149 (395)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEEGG
T ss_pred HHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhh----hhcCCEEEEEecccc
Confidence 4455566666665564 34555555569999999999999999999999998755433 33455544442
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh---ccCC
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---SLGA 348 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl---~~ga 348 (466)
..|++++++.+.++ +++|++++|+||||.+++ +++|+++|++++++++.|++|...... .+. ....
T Consensus 150 ~~~~~d~~~~~~~~~~~-~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 228 (395)
T d1xi9a_ 150 EDWQPDIDDIRKKITDR-TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 228 (395)
T ss_dssp GTSEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC
T ss_pred ccccchHHHHHHhhccc-ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCC
Confidence 24789999999874 999999999999999986 578888999999999999998654321 111 1123
Q ss_pred cEEEeccccccccccCceEEEEE-e-ChHHHHHHHHHH---HHhCCC---chHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSIS-G-SGKLVTQIRNLH---HVLGGA---LNPNAAYLIIR-GMKTLHLRVQQQNSTALR 419 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vv-g-~~eli~~l~~~~---~~~G~~---ls~~~A~l~lr-gL~tl~~R~e~~~~na~~ 419 (466)
-|++.|+||.++.+|.. .||++ . +.+.+..+++.. ...... +....+..++. +.+.+....+.+.++++.
T Consensus 229 vi~~~S~SK~~~~~GlR-vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (395)
T d1xi9a_ 229 VIVMNGLSKVYFATGWR-LGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDY 307 (395)
T ss_dssp EEEEEESTTTTCCGGGC-CEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCcchhcccchhh-cEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 48899999999988865 46654 3 333333333322 122222 22232322232 345667777778889999
Q ss_pred HHHHHHcCCCc
Q 012321 420 MAKILEAHPKV 430 (466)
Q Consensus 420 La~~L~~~p~V 430 (466)
+.+.|++++.+
T Consensus 308 l~~~L~~~~~~ 318 (395)
T d1xi9a_ 308 IYKRLNEIPGI 318 (395)
T ss_dssp HHHHHHTSTTE
T ss_pred HHHHHHhCCCc
Confidence 99999998765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.82 E-value=8.2e-19 Score=179.15 Aligned_cols=212 Identities=17% Similarity=0.196 Sum_probs=151.5
Q ss_pred hhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 210 PTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
+.++++.+++++..|. .+.|++++|. +|+..++++++++||.|++++|.|+.....+. ..|.++..++
T Consensus 70 ~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~ 145 (418)
T d2r5ea1 70 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK----AAGGIPRFIPLKP 145 (418)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHH----HcCCeEEEEEecc
Confidence 3455566666665553 2446666665 99999999999999999999999998665443 2344444332
Q ss_pred ------------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012321 282 ------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----- 341 (466)
Q Consensus 282 ------------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----- 341 (466)
..+.+++.+.... +++++++++|+||||.+++ +++|+++|+++++++|.|++|......
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~ 224 (418)
T d2r5ea1 146 NKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHI 224 (418)
T ss_dssp SCCSSCEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccchhhhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccc
Confidence 1357888888776 4999999999999999986 567888999999999999998654321
Q ss_pred chhc----cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----------HHH
Q 012321 342 KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----------KTL 406 (466)
Q Consensus 342 ~pl~----~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----------~tl 406 (466)
.... ....+++.|+||.++.+|. +.||+++++++++.+.+.........+...+..+...+ +.+
T Consensus 225 s~~~~~~~~~~~i~~~S~SK~~~~pGl-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 303 (418)
T d2r5ea1 225 RICTLPGMWERTITIGSAGKTFSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYF 303 (418)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHTTCGGG-CCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHH
T ss_pred cccccccccceeeeeecCCccccCCCc-ccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhH
Confidence 1111 1234889999999998874 57999999999999888776555444443332222211 234
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 012321 407 HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~ 427 (466)
....+.+.++++.+.+.|++.
T Consensus 304 ~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d2r5ea1 304 NSISGELMAKRDYMASFLAEV 324 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHhhHhhc
Confidence 445566677888899999986
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.82 E-value=4.6e-19 Score=179.81 Aligned_cols=217 Identities=15% Similarity=0.170 Sum_probs=174.7
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
..|.++++|+++++++|.+.+++++||++|+.++++++ +++||+|+++..+|..+...+ ...|.++.++|.
T Consensus 32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai----~~~g~~p~~~d~~~~~ 107 (384)
T d1b9ha_ 32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA----QRLGAVTVPVDVDAAT 107 (384)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTT
T ss_pred CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccc----cccccccccccccccc
Confidence 46899999999999999999999999999999999987 799999999999999877544 345777777763
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--hhccCCcEEEecc--c
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSA--T 356 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~--pl~~gaDivv~S~--s 356 (466)
.|++.+++.++++ |++|++ .+..|...|+++|.++|+++|+++|.|++++.+...+ +.....|+.+.|+ +
T Consensus 108 ~~~d~~~~~~~i~~~-tk~i~~---~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~ 183 (384)
T d1b9ha_ 108 YNLDPEAVAAAVTPR-TKVIMP---VHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNG 183 (384)
T ss_dssp CCBCHHHHHHHCCTT-EEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTT
T ss_pred cccchhhhccccccc-cccccc---ccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceeccccc
Confidence 3799999999885 999864 7778999999999999999999999999987654322 2222246666665 8
Q ss_pred cccccccCceEEEEEeC-hHHHHHHHHHHHH---------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~---------------~G--~~ls~~~A~l~lrgL~tl~~R~e~~~~na~ 418 (466)
|.++.+. ||+++++ +++.++++.++.. .| ..++.+.|.+++..|+.++.++++.+++++
T Consensus 184 K~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~ 260 (384)
T d1b9ha_ 184 KLMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWT 260 (384)
T ss_dssp SSSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhh
Confidence 9987653 6777665 6777777765542 12 336788899999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEeC
Q 012321 419 RMAKILEAHPKVKRVHY 435 (466)
Q Consensus 419 ~La~~L~~~p~V~~V~~ 435 (466)
.+.+.|++.+.+.....
T Consensus 261 ~y~~~L~~~~~i~~~~~ 277 (384)
T d1b9ha_ 261 LLSRLLGAIDGVVPQGG 277 (384)
T ss_dssp HHHHHHHTSTTCEECCC
T ss_pred hhhhhhhcccccccccc
Confidence 99999999888755433
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=3.3e-19 Score=178.41 Aligned_cols=212 Identities=19% Similarity=0.233 Sum_probs=168.7
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~----- 282 (466)
.|.+++||+++++++|.+.+++++||++|+.+++.++ +++||+|+++..+|.++...+. ..|.+..++|.
T Consensus 30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~----~~g~~pv~~d~~~~~~ 105 (376)
T d1mdoa_ 30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV----LLGANPVMVDVDRDTL 105 (376)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH----HTTCEEEEECBCTTTC
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchh----ccccceeeeccccccc
Confidence 5899999999999999999999999999999999998 8999999999999998775543 35667777663
Q ss_pred -CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC-CcEEEec--cccc
Q 012321 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHS--ATKF 358 (466)
Q Consensus 283 -~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g-aDivv~S--~sK~ 358 (466)
.|+++|+++++++ |++|++ .|..|...|+++|.++|+++|++||+|++++.+........| .|..+.| .+|.
T Consensus 106 ~~d~~~l~~~i~~~-tkaIi~---~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~ 181 (376)
T d1mdoa_ 106 MVTPEHIEAAITPQ-TKAIIP---VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKN 181 (376)
T ss_dssp CBCHHHHHHHCCTT-EEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSS
T ss_pred CCCHHHHHHhcCCC-CeEEEE---eCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCC
Confidence 3899999999985 999986 567899999999999999999999999998766443322221 2345555 4699
Q ss_pred cccccCceEEEEEeC-hHHHHHHHHHHHH------------------------hCCCchHHHHHHHHHhhHHHHHHHHHH
Q 012321 359 IGGHNDVLAGSISGS-GKLVTQIRNLHHV------------------------LGGALNPNAAYLIIRGMKTLHLRVQQQ 413 (466)
Q Consensus 359 lgG~gdv~gG~vvg~-~eli~~l~~~~~~------------------------~G~~ls~~~A~l~lrgL~tl~~R~e~~ 413 (466)
++.+. ||+++++ +++.++++.++.. ....++...+.+.+..|+.++..+++.
T Consensus 182 l~~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r 258 (376)
T d1mdoa_ 182 ITCAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARR 258 (376)
T ss_dssp SCSSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHH
Confidence 97654 6877776 4566666654321 123356677888888899999999999
Q ss_pred HHHHHHHHHHHHcCCCcE
Q 012321 414 NSTALRMAKILEAHPKVK 431 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V~ 431 (466)
.+++..+.+.|++.+.+.
T Consensus 259 ~~~~~~~~~~L~~~~~~~ 276 (376)
T d1mdoa_ 259 AAIAAQYHQAMADLPFQP 276 (376)
T ss_dssp HHHHHHHHHHHHTSSCEE
T ss_pred hhhhhhhhhhcccccccc
Confidence 999999999999987653
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.3e-19 Score=180.95 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=143.2
Q ss_pred cCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~a----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
+++......++.++.+++++|+ ++.+++.++++++..++.+ .+.+||+|++.+..|++....+....++.|++
T Consensus 60 ~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~ 139 (405)
T d1jf9a_ 60 LSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAE 139 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcE
Confidence 3333344567778999999984 4566667777898877765 35889999999999999887777777788999
Q ss_pred EEEeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcE
Q 012321 277 ATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADL 350 (466)
Q Consensus 277 v~~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDi 350 (466)
+.+++. .|++.++++++++ |++|.++..+|.+|.+.|+++|+++||++|+++++|.+++.+.. .+..++++|+
T Consensus 140 v~~~~~~~~g~~~~~~~~~~i~~~-t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~ 218 (405)
T d1jf9a_ 140 LRVIPLNPDGTLQLETLPTLFDEK-TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 218 (405)
T ss_dssp EEEECBCTTSCBCGGGHHHHCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSE
T ss_pred EEEECCCCCCcCCHHHHHHhccCC-cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCce
Confidence 998863 3788999999885 99999999999999999999999999999999999999988754 5666789999
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQI 380 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l 380 (466)
++.|++||+|++| .|+++.++++.+.+
T Consensus 219 ~~~s~hK~~Gp~G---~g~l~v~~~~~~~~ 245 (405)
T d1jf9a_ 219 YVFSGHKLYGPTG---IGILYVKEALLQEM 245 (405)
T ss_dssp EEEEGGGTTSCSS---CEEEEECHHHHTTC
T ss_pred eeccccccccCCC---ceeeeechhhhccc
Confidence 9999999987665 58888888776543
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=3.1e-18 Score=171.68 Aligned_cols=211 Identities=15% Similarity=0.172 Sum_probs=148.8
Q ss_pred hHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-----
Q 012321 211 TTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----- 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd----- 281 (466)
.++++.+.+.+..|. ++.+++++|++|+..++.+++++||.|++++|.|+....... ..+.....+.
T Consensus 70 lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~----~~~~~~~~~~~~~~~ 145 (375)
T d1o4sa_ 70 LREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII----LAGGTVNVVETFMSK 145 (375)
T ss_dssp HHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEECCGGG
T ss_pred HHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhh----ccccccccccccccc
Confidence 344444444444443 456666666699999999999999999999999998654433 2343333332
Q ss_pred --CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----chh----ccCC
Q 012321 282 --PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL----SLGA 348 (466)
Q Consensus 282 --~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~----~pl----~~ga 348 (466)
..|.+.++....++ ++++++++|+||||.+.. +++|+++|++|+++||.||+|...... .+. ..+.
T Consensus 146 ~~~~~~~~~~~~~~~~-~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T d1o4sa_ 146 NFQPSLEEVEGLLVGK-TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR 224 (375)
T ss_dssp TTCCCHHHHHHTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTT
T ss_pred cccchhHHHHHhhccC-ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCC
Confidence 23678888877764 999999999999999985 678888899999999999998654321 111 2234
Q ss_pred cEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHcC
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-TLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~-tl~~R~e~~~~na~~La~~L~~~ 427 (466)
-+++.|+||.++.+| .+.||+++++++++.+...+..................++ ......+...++.+.+.+.|+++
T Consensus 225 ~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~ 303 (375)
T d1o4sa_ 225 IVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM 303 (375)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeechhhccCCc-cccccccccccchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhc
Confidence 599999999999777 4689999999999988877776665555544443333322 22333445566777788888775
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.5e-18 Score=174.78 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=143.0
Q ss_pred hHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 012321 211 TTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~---- 282 (466)
.++++.+.+.+..|. .+.|++++|. +++..++.+++.+||.|++++|+|+.....+ ...|..+..++.
T Consensus 69 LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~----~~~g~~~~~~~~~~~~ 144 (389)
T d2gb3a1 69 LREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRRMEE 144 (389)
T ss_dssp HHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECCGGG
T ss_pred HHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccc----cccCcccccccccccc
Confidence 345555555555553 3345555555 8999999999999999999999998865443 334555444422
Q ss_pred --CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----h--hccCCcEE
Q 012321 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A--LSLGADLV 351 (466)
Q Consensus 283 --~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----p--l~~gaDiv 351 (466)
.+.+.+...+.+ +++++++++|+||||.+.+ +++|.++|+++++++|+|++|....... . ......++
T Consensus 145 ~~~~~~~~~~~~~~-~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v 223 (389)
T d2gb3a1 145 GFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVV 223 (389)
T ss_dssp TSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEE
T ss_pred ccchhhhhhhhccc-CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccc
Confidence 133455566666 4999999999999999985 7789999999999999999986543221 1 12234589
Q ss_pred EeccccccccccCceEEEEEeChHHH-HHHHHHHHHhCCCchHHHHH---HHHHh-hHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 352 LHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGALNPNAAY---LIIRG-MKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 352 v~S~sK~lgG~gdv~gG~vvg~~eli-~~l~~~~~~~G~~ls~~~A~---l~lrg-L~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+.|++|.++.+|. +.||++++++.+ +.+...... .......... .++.. -+.++...+...++++.+.+.|++
T Consensus 224 ~~s~sK~~~~~Gl-RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 301 (389)
T d2gb3a1 224 IDSVSKKFSACGA-RVGCLITRNEELISHAMKLAQG-RLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE 301 (389)
T ss_dssp EEESTTTTTCGGG-CCEEEECSCHHHHHHHHHHHHH-SCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCccc-ceeeeeccchhHHHHHhhhhhc-cccccccccccccccccccchhcccccccccccchhhhhhhhh
Confidence 9999999999885 568888866544 444443333 3232332222 22222 234455556677888999999998
Q ss_pred CCCc
Q 012321 427 HPKV 430 (466)
Q Consensus 427 ~p~V 430 (466)
++.+
T Consensus 302 ~~~~ 305 (389)
T d2gb3a1 302 HGLK 305 (389)
T ss_dssp TTCC
T ss_pred hccc
Confidence 8654
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5e-18 Score=169.28 Aligned_cols=221 Identities=18% Similarity=0.116 Sum_probs=142.5
Q ss_pred CCccCCCCc-hhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCc
Q 012321 201 SFEYGRYGN-PTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (466)
Q Consensus 201 ~~~Y~R~~~-p~~~~Lee~lA~l~g~----e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi 275 (466)
.+.|..... +.++++.+++++.+|. ++.++++++++++..++.+++++||+|++++|.|+.....+. ..|.
T Consensus 29 ~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~----~~g~ 104 (361)
T d1d2fa_ 29 VFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE----GNQR 104 (361)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH----HTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHHH----hhcc
Confidence 345655433 3455555555555563 456666666699999999999999999999999988665443 2344
Q ss_pred EEEEeC--------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012321 276 TATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--- 341 (466)
Q Consensus 276 ~v~~vd--------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~--- 341 (466)
.+..+. ..|++.+++.+.+.++++|++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 105 ~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~ 184 (361)
T d1d2fa_ 105 TVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP 184 (361)
T ss_dssp EEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC
T ss_pred eEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccc
Confidence 433321 148999999987767999999999999999885 789999999999999999998754321
Q ss_pred -ch---hccCCcEEEeccccccccccCceEEEEEeC-hHHHHHH-HHHHHHhCC-CchHHHHHHH---HHh-hHHHHHHH
Q 012321 342 -KA---LSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQI-RNLHHVLGG-ALNPNAAYLI---IRG-MKTLHLRV 410 (466)
Q Consensus 342 -~p---l~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l-~~~~~~~G~-~ls~~~A~l~---lrg-L~tl~~R~ 410 (466)
.+ ...+..+++.|+||.++.+|. +.|+++.. +...+.+ .......+. .......... ... .+......
T Consensus 185 ~~~~~~~~~~~~v~~~s~SK~~~~~g~-R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 263 (361)
T d1d2fa_ 185 HIPWSNVARGDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALR 263 (361)
T ss_dssp CCCGGGTCCSSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc-cceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhccc
Confidence 11 122234889999999987764 56777554 4443333 333333332 2222222221 222 12233344
Q ss_pred HHHHHHHHHHHHHHHc
Q 012321 411 QQQNSTALRMAKILEA 426 (466)
Q Consensus 411 e~~~~na~~La~~L~~ 426 (466)
+...++++.+.+.+.+
T Consensus 264 ~~~~~r~~~~~~~~~~ 279 (361)
T d1d2fa_ 264 IYLKDNLTYIADKMNA 279 (361)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHhhh
Confidence 4455666666666554
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=7.7e-18 Score=169.83 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=160.2
Q ss_pred hhHHHHHHHHHhhhCC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe--C-
Q 012321 210 PTTVVVEEKMSALEGA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--D- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~----e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v--d- 281 (466)
+.++++.+.+.+.+|. ++.+++++| ++++.+++++++++||.|++++|.|......+ ...|..+..+ +
T Consensus 67 ~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~ 142 (382)
T d1u08a_ 67 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAI----ALSGGIVKRMALQP 142 (382)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhh----hhccccceeccccc
Confidence 4455555666555563 343555555 59999999999999999999999999865443 3344443333 2
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ch----hcc
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA----LSL 346 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~p----l~~ 346 (466)
..|++++++.++++ +++|++++|+||||.+++ +++|+++|++++++++.|+.|...... .+ ...
T Consensus 143 ~~~~~d~~~l~~~~~~~-~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~ 221 (382)
T d1u08a_ 143 PHFRVDWQEFAALLSER-TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLR 221 (382)
T ss_dssp TTCCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHH
T ss_pred ccccCCHHHHhhhhccC-ccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccccccccc
Confidence 24789999998875 999999999999999986 567778888899999999997543221 11 112
Q ss_pred CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHH
Q 012321 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII----RGMKTLHLRVQQQNSTALRMAK 422 (466)
Q Consensus 347 gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~l----rgL~tl~~R~e~~~~na~~La~ 422 (466)
...|++.|+||.++.+|. +.||+++++++++.+.........+.+......+. .+.+.+....+.+.++++.+.+
T Consensus 222 ~~~i~~~s~SK~~~~pG~-RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 300 (382)
T d1u08a_ 222 ERAVAVSSFGKTYHMTGW-KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVN 300 (382)
T ss_dssp TTEEEEEEHHHHTTCGGG-CCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHH
T ss_pred CcEEEEeeccccccCCcc-cchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhh
Confidence 235999999999998874 57999999999999888776665555544333322 2334455555666777788888
Q ss_pred HHHcCCCcE----------EEeCCCCCCCcchHHHHhh
Q 012321 423 ILEAHPKVK----------RVHYPGLKSHPEHHIATQQ 450 (466)
Q Consensus 423 ~L~~~p~V~----------~V~~PgL~s~p~~~l~~~~ 450 (466)
.++.. ++. ++..|.+......+++++.
T Consensus 301 ~~~~~-g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~l 337 (382)
T d1u08a_ 301 ALNES-RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWL 337 (382)
T ss_dssp HTTSS-SCEECCCCBSSEEEEECTTTCCSCHHHHHHHH
T ss_pred hhccC-CcEEecCCceEEEEEecCCCCCCCHHHHHHHH
Confidence 77653 332 4445555444445555443
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=6.3e-19 Score=174.93 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=151.9
Q ss_pred CCCCchhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 205 GRYGNPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 205 ~R~~~p~~~~Lee~lA~l~g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
.+|+++...+|++.++++++. ++.|++++|+ +++.+++ ++||+|++.+|+|+..... +...|+++..
T Consensus 51 ~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~----~~~d~v~i~~P~y~~~~~~----~~~~g~~~v~ 122 (334)
T d2f8ja1 51 RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM----LMFDRSVFFPPTYSCYRIF----AKAVGAKFLE 122 (334)
T ss_dssp GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHH----HHSSEEEECSSCCHHHHHH----HHHHTCCEEE
T ss_pred cCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHh----hhccccccccccccccccc----hhccCCcccc
Confidence 334445567899999998763 4557777777 6776544 5679999999999886543 3446888888
Q ss_pred eCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----cchhccCCcEEEecc
Q 012321 280 IDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLGADLVLHSA 355 (466)
Q Consensus 280 vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~----~~pl~~gaDivv~S~ 355 (466)
++..+.....+...+ +++++++++|+||||.+.+.+.|.++ .++++++|+|+.|..... ........-+++.|+
T Consensus 123 v~~~~~~~~~~~~~~-~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~ 200 (334)
T d2f8ja1 123 VPLTKDLRIPEVNVG-EGDVVFIPNPNNPTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTF 200 (334)
T ss_dssp CCCCTTSCCCCCCCC-TTEEEEEESSCTTTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEES
T ss_pred ccccccccccccccc-cceEEEecccccccceeecHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecC
Confidence 875421112223333 48999999999999999998888776 467999999999754322 112222345999999
Q ss_pred ccccccccCceEEEEEeChHHHHHHHHHHHHhCCCc-hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 356 sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~l-s~~~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
||+++.+|. +.|+++++++++++++..+...+... ....+...+...+.+..+++++.++++.+.+.|++++
T Consensus 201 SK~~~~~G~-R~G~~~~~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g 273 (334)
T d2f8ja1 201 SKAFSLAAQ-RVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG 273 (334)
T ss_dssp TTTSSCTTT-CEEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhh-hhhhcccchHHHHHHHHhhcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 999998874 68999999999999988765544222 2223344455667777788888899999999999874
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.9e-17 Score=168.19 Aligned_cols=214 Identities=11% Similarity=0.111 Sum_probs=169.8
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+...+||+.||+++|.+.+++++||+.|+..++.++..++|.|++....|.+..... +..+.++..+...|.++
T Consensus 81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~----~~~~~~~~~~~hnd~~~ 156 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAA----SLSPSQLRRFAHNDVTH 156 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH----HTSSSEEEEECTTCHHH
T ss_pred cchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhcc----ccCCCcceEecchHHHH
Confidence 35778999999999999999999999999999999999999999999999988765433 34566777888899999
Q ss_pred HHHhccCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch-------hccCCcEEEeccccc
Q 012321 288 LEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-------LSLGADLVLHSATKF 358 (466)
Q Consensus 288 Le~ai~~~--~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p-------l~~gaDivv~S~sK~ 358 (466)
+++.+... +.++|++|.+.+++|.+.|+++|.++|++||++|++|++++.++.... .....|+++.+++|.
T Consensus 157 le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka 236 (383)
T d1bs0a_ 157 LARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKG 236 (383)
T ss_dssp HHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSST
T ss_pred HHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccccccc
Confidence 98887542 368999999999999999999999999999999999999887755221 223457899999999
Q ss_pred cccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 359 IGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~t-----l~~R~e~~~~na~~La~~L~~~p~ 429 (466)
++.. ||++.++.++++.++.... .++..++|..+..++..++- .+.+.++..++..++.+.|.+.+.
T Consensus 237 ~g~~----Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~ 310 (383)
T d1bs0a_ 237 FGVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF 310 (383)
T ss_dssp TSSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cccc----ccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9876 5899999999998876543 33445555544443333332 345666777888888888887663
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.79 E-value=6.9e-18 Score=171.55 Aligned_cols=200 Identities=13% Similarity=0.137 Sum_probs=139.9
Q ss_pred cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCceE
Q 012321 227 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNVSL 299 (466)
Q Consensus 227 ~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~~~tkl 299 (466)
+.++++++++|+..++.+++++||+|++++|+|+..... +...|+++..++. .+++++++.+++. +++
T Consensus 103 ~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~-~~~ 177 (412)
T d1bw0a_ 103 NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETV----CKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-TKL 177 (412)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT-EEE
T ss_pred eEEEecccccchhhhhhhhhccccceeeeeccchhhhhh----hhccCccccccccccccccchhhHHHHhhhhcc-ccc
Confidence 444444445999999999999999999999999876543 3446777665532 3788999988875 999
Q ss_pred EEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc--h-------hcc---CCcEEEeccccccccccC
Q 012321 300 FFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--A-------LSL---GADLVLHSATKFIGGHND 364 (466)
Q Consensus 300 V~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~--p-------l~~---gaDivv~S~sK~lgG~gd 364 (466)
+++++|+||||.+.+ +++|+++|++++++||+|++|....... + ... ..-+++.|+||.++.+|.
T Consensus 178 ~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~ 257 (412)
T d1bw0a_ 178 LIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGW 257 (412)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGG
T ss_pred cccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCC
Confidence 999999999999985 6788888999999999999987543211 0 001 123788899999998885
Q ss_pred ceEEEEEeCh------HHHHHHHHHHHHhCCCchHHHHHHHH---H-hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Q 012321 365 VLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLII---R-GMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432 (466)
Q Consensus 365 v~gG~vvg~~------eli~~l~~~~~~~G~~ls~~~A~l~l---r-gL~tl~~R~e~~~~na~~La~~L~~~p~V~~ 432 (466)
. .||+++++ +++..................+.++. . ..+.+....+++.++++.+.+.|.+++++..
T Consensus 258 R-vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~ 334 (412)
T d1bw0a_ 258 R-LGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP 334 (412)
T ss_dssp C-CEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred C-cccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee
Confidence 4 67777643 34444444444333333333222221 1 2234566667788889999999988877653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.79 E-value=7.8e-18 Score=171.67 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=142.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCccchHHHHHhhcccC
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e--~-~v~~~SG~aAi~~al~a----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.|.+++......++.++.+++++|++ + .++++++++++.+++.. .+++||+|++.+..|++....+....++.
T Consensus 57 ~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~ 136 (408)
T d1t3ia_ 57 AHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT 136 (408)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc
Confidence 34455544567778899999999972 4 44555566788777655 35789999999999999877776667777
Q ss_pred CcEEEEeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccC
Q 012321 274 GITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG 347 (466)
Q Consensus 274 gi~v~~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~g 347 (466)
|+++..++. .+.+.++++++++ |++|.+...+|.+|.+.|+++|.++||++|+++++|.+++.+.. .+..++|
T Consensus 137 g~~v~~~~~~~~~~~~~~~l~~~~~~~-t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~ 215 (408)
T d1t3ia_ 137 GAVLKFVQLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLID 215 (408)
T ss_dssp CCEEEEECBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT
T ss_pred CceEeeeeccccccccHHHhhhccCCC-ceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccC
Confidence 888888763 3689999999885 99999999999999999999999999999999999999887644 4555779
Q ss_pred CcEEEeccccccccccCceEEEEEeChHHHHHH
Q 012321 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 380 (466)
Q Consensus 348 aDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l 380 (466)
+|+++.|++||+|++| .|+++.+++....+
T Consensus 216 ~D~~~~s~hK~~gp~G---~g~l~v~~~~~~~~ 245 (408)
T d1t3ia_ 216 CDWLVASGHKMCAPTG---IGFLYGKEEILEAM 245 (408)
T ss_dssp CSEEEEEGGGTTSCTT---CEEEEECHHHHHHS
T ss_pred CceEEeccccccCCCC---ccccccchhhhhcC
Confidence 9999999999987765 58888888776543
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=9.4e-18 Score=171.32 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=150.1
Q ss_pred hHHHHHHHHHhhhCCC----cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 211 TTVVVEEKMSALEGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e----~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
.++.+.+.+.+.+|.+ +.|++++|+ +|+..++.+++.+||.|++++|.|+.....+. ..|.+...++
T Consensus 69 LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~----~~g~~~v~~~~~~~ 144 (418)
T d1w7la_ 69 LTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM----MAGGRPVFVSLKPG 144 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEECEEC
T ss_pred HHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHH----HcCCEeeccccccc
Confidence 4455555555555642 346666665 99999999999999999999999998665443 2333332221
Q ss_pred -------------CCCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----
Q 012321 282 -------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---- 341 (466)
Q Consensus 282 -------------~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~---- 341 (466)
..|.+++....++. +++|++++|+||||.+++ +++|.++|+++++++|+|++|....+.
T Consensus 145 ~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~ 223 (418)
T d1w7la_ 145 PIQNGELGSSSNWQLDPMELAGKFTSR-TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQH 223 (418)
T ss_dssp C---CCSEEGGGEECCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred cccccccccccCcccchhhhhcccccc-ccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCC
Confidence 12567777777764 999999999999999985 678999999999999999998654321
Q ss_pred -chhcc----CCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----------HH
Q 012321 342 -KALSL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----------KT 405 (466)
Q Consensus 342 -~pl~~----gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL-----------~t 405 (466)
..... ...+++.|+||.++.+| .+.||+++++++++.+++.+.......+......+...+ +.
T Consensus 224 ~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 302 (418)
T d1w7la_ 224 ISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSY 302 (418)
T ss_dssp CCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSH
T ss_pred CCHHHccccccccceecccCccccCCC-CcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccc
Confidence 11111 13589999999999887 468999999999999988877655554444333222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Q 012321 406 LHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 406 l~~R~e~~~~na~~La~~L~~~p 428 (466)
+....+...++++.+.+.|++.+
T Consensus 303 ~~~~~~~~~~~r~~l~~~L~~~g 325 (418)
T d1w7la_ 303 FVQFPQAMQRCRDHMIRSLQSVG 325 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccchhhhhhhhhhhhhhhhhcC
Confidence 44455667778888999998863
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.78 E-value=2e-17 Score=169.62 Aligned_cols=200 Identities=15% Similarity=0.198 Sum_probs=135.2
Q ss_pred cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC----
Q 012321 227 STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN---- 294 (466)
Q Consensus 227 ~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~---- 294 (466)
+.|++++|. +++..++.+++.|||+|++++|.|+.....+. ...|+++..++. .|++.+++++++
T Consensus 110 e~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~ 186 (431)
T d1m7ya_ 110 NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR 186 (431)
T ss_dssp GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT
T ss_pred ceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH---HhcCceeccccccchhcccccHHHhhhhhhhhhhc
Confidence 455555655 99999999999999999999999988654331 133666655532 367777766642
Q ss_pred -CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----chhc-------------cCCcEEE
Q 012321 295 -NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS-------------LGADLVL 352 (466)
Q Consensus 295 -~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~-----~pl~-------------~gaDivv 352 (466)
.++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+. ..+. ...-+++
T Consensus 187 ~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~ 266 (431)
T d1m7ya_ 187 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV 266 (431)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEE
T ss_pred cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEE
Confidence 24899999999999999986 778899999999999999998643221 1111 0123889
Q ss_pred eccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH--HHHhh----HHHHHHHHHHHHHHHHHHHHHHc
Q 012321 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL--IIRGM----KTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 353 ~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l--~lrgL----~tl~~R~e~~~~na~~La~~L~~ 426 (466)
.|+||.++.+|. +.|+++++++++..............++..+.+ .+... +.+....+++.++.+.+.+.|++
T Consensus 267 ~s~SK~~~~~G~-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 345 (431)
T d1m7ya_ 267 YSLSKDLGLPGF-RVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK 345 (431)
T ss_dssp EESSSSSCCGGG-CEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCcccccCCCC-ccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 999999998774 578999988877655544444444333322221 11111 22333444556777888888876
Q ss_pred CCCcE
Q 012321 427 HPKVK 431 (466)
Q Consensus 427 ~p~V~ 431 (466)
+ ++.
T Consensus 346 ~-gi~ 349 (431)
T d1m7ya_ 346 S-GIS 349 (431)
T ss_dssp T-TCE
T ss_pred C-CcE
Confidence 3 443
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.76 E-value=5.8e-17 Score=166.00 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhhCC-----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 212 TVVVEEKMSALEGA-----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 212 ~~~Lee~lA~l~g~-----e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
++++.+.+.+.+|. ++.|++++| ++++..++.+++.+||+|++++|+|+.....+ ....|+++..++.
T Consensus 89 R~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~---~~~~g~~~v~v~~~~~ 165 (428)
T d1iaya_ 89 RKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPIHCESS 165 (428)
T ss_dssp HHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHT---TTTTCCEEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHH---HHhcCCeEEEeecccc
Confidence 44444444444442 234555555 59999999999999999999999999865332 2234777777653
Q ss_pred ----CCHHHHHHhcc-----CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----hh-
Q 012321 283 ----ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL- 344 (466)
Q Consensus 283 ----~D~e~Le~ai~-----~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~-----pl- 344 (466)
.|.++++.+++ ..++++|++++|+||||.+++ +++|.++|++||++||+|++|....+.. ..
T Consensus 166 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~ 245 (428)
T d1iaya_ 166 NNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAE 245 (428)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHH
T ss_pred cccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccccccccc
Confidence 35666654431 224899999999999999986 6789999999999999999987532211 00
Q ss_pred ----------ccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCCCchHHHHHHH-H---HhhH-HHHH
Q 012321 345 ----------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLI-I---RGMK-TLHL 408 (466)
Q Consensus 345 ----------~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~~ls~~~A~l~-l---rgL~-tl~~ 408 (466)
.....+++.|+||.++.+|. +.|++++. +++++.++..............+..+ + ..++ .+..
T Consensus 246 ~~~~~~~~~~~~~~vi~~~s~SK~~~~~Gl-RiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~ 324 (428)
T d1iaya_ 246 ILDEQEMTYCNKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRE 324 (428)
T ss_dssp HHTSGGGTTSCTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchhhccccccceEEEEecCCCcccCCCc-ccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccccccc
Confidence 11224889999999988774 57888874 55666665544332222222211111 1 1112 2333
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 012321 409 RVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~ 427 (466)
..+...++.+.+.+.|+..
T Consensus 325 ~~~~l~~r~~~~~~~L~~~ 343 (428)
T d1iaya_ 325 SAMRLGKRHKHFTNGLEVV 343 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHHHHHHhC
Confidence 4445566777888888764
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.76 E-value=2.4e-17 Score=165.36 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=165.3
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC----
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---- 283 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~---- 283 (466)
.|.++.||+.+++++|.+.+++++||++|+.++++++ +++||+|+++..+|..+...+ ...|.+..++|.+
T Consensus 20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~----~~~g~~pv~~Di~~~~~ 95 (374)
T d1o69a_ 20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYN 95 (374)
T ss_dssp THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSS
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHH----hhccceeEecccccccc
Confidence 4889999999999999999999999999999999998 889999999999999876443 3458888888754
Q ss_pred --CH--HHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccC--CcEEEeccc-
Q 012321 284 --DM--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT- 356 (466)
Q Consensus 284 --D~--e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~g--aDivv~S~s- 356 (466)
+. +++...+++ ++++|++ .+..|...|+++|.++|+++|++||.|++++.+...+....| .|+.++|++
T Consensus 96 ~~~~~~~~~~~~~~~-~~~aii~---~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~ 171 (374)
T d1o69a_ 96 IDVDLLKLAIKECEK-KPKALIL---THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNG 171 (374)
T ss_dssp BCHHHHHHHHHHCSS-CCCEEEE---ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred cccccccccchhccc-ccccccc---cccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccC
Confidence 12 233345555 4888887 556799999999999999999999999998766443322222 499999985
Q ss_pred -cccccccCceEEEEEe-ChHHHHHHHHHHHH------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012321 357 -KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 357 -K~lgG~gdv~gG~vvg-~~eli~~l~~~~~~------------~G--~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~L 420 (466)
|.++..+ ||++++ +++++++++.++.. .| ..++.+.|.+.+..|+.++.++++..++++.+
T Consensus 172 ~K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y 248 (374)
T d1o69a_ 172 NKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWY 248 (374)
T ss_dssp TSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHH
Confidence 8887665 566655 57788887766431 12 34788889999999999999999999999999
Q ss_pred HHHHHcC
Q 012321 421 AKILEAH 427 (466)
Q Consensus 421 a~~L~~~ 427 (466)
.+.|.+.
T Consensus 249 ~~~L~~~ 255 (374)
T d1o69a_ 249 KEFLGEY 255 (374)
T ss_dssp HHHHTTT
T ss_pred Hhhcccc
Confidence 9999765
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=3.3e-17 Score=166.87 Aligned_cols=210 Identities=14% Similarity=0.135 Sum_probs=137.3
Q ss_pred hHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 211 TTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~----e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
.++++.+.+.+..|. ++.|++++|+ +++..++.+++.+||+|++++|.|+..... .+..|.++..++.
T Consensus 85 LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~~~~ 160 (420)
T d1vp4a_ 85 LKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINA----FRQYLANFVVVPLEDD 160 (420)
T ss_dssp HHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHH----HHHHhhhccccccccc
Confidence 445555555555553 3455566665 999999999999999999999999976543 3445666655532
Q ss_pred -CCHHHHHHhcc--------CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----h---
Q 012321 283 -ADMEGLEAALN--------NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A--- 343 (466)
Q Consensus 283 -~D~e~Le~ai~--------~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----p--- 343 (466)
.|++.++..+. .+.+.++++++|+||||.+++ +++|+++|+++++++|+|++|....+.. +
T Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~ 240 (420)
T d1vp4a_ 161 GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK 240 (420)
T ss_dssp EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH
T ss_pred ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccc
Confidence 25555443221 122557778899999999985 6789999999999999999987543211 1
Q ss_pred -hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhh------HHHHHHHHHHHHH
Q 012321 344 -LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQNST 416 (466)
Q Consensus 344 -l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL------~tl~~R~e~~~~n 416 (466)
...+..+++.|++|++. +| .+.||+++++++++++.+.....+...+......+...+ +.+....+...++
T Consensus 241 ~~~~~~~i~~~s~sk~~~-~G-~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~ 318 (420)
T d1vp4a_ 241 IGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRK 318 (420)
T ss_dssp HHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHH
T ss_pred cccccceeEEeccccccc-cc-cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhh
Confidence 12234477788888875 55 568999999999999988777665544444333222221 2233334444555
Q ss_pred HHHHHHHHHc
Q 012321 417 ALRMAKILEA 426 (466)
Q Consensus 417 a~~La~~L~~ 426 (466)
...+.+.|++
T Consensus 319 ~~~~~~~L~~ 328 (420)
T d1vp4a_ 319 RTVMLNALEE 328 (420)
T ss_dssp HHHHHHHHHH
T ss_pred cccchhhhhh
Confidence 5555555543
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.75 E-value=1.3e-17 Score=166.00 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=144.4
Q ss_pred cCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
..+|+++...+|++.+|+++|. ++.|++++|+ +++.+++..+. |+.+++..|.|....... .+...++....++
T Consensus 51 ~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~--~~~~~~~~~v~~~ 126 (355)
T d1lc5a_ 51 IERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGRAL--AQSGCEIRRWSLR 126 (355)
T ss_dssp GGSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTHHHHHH--HHTTCEEEEEECC
T ss_pred hccCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc--cccccccCCccceecccc--ccccccceeeeee
Confidence 4567777778999999999996 3445666666 66665554443 445555667776533222 1222223222222
Q ss_pred C----CCHHHHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc------hhccCC
Q 012321 282 P----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------ALSLGA 348 (466)
Q Consensus 282 ~----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~------pl~~ga 348 (466)
. ...+++++++.++ +++|++++|+||||.+++ +++|+++|+++++++|+|++|....... ....+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~-~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 205 (355)
T d1lc5a_ 127 EADGWQLTDAILEALTPD-LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 205 (355)
T ss_dssp GGGTTCCCTTHHHHCCTT-CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred ccCCccceeeeeeccccc-cceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccccccc
Confidence 1 1235566677764 999999999999999986 6678888899999999999986432211 112234
Q ss_pred cEEEeccccccccccCceEEEEEeChHH-HHHHHHHHHHhCCCchHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIR---GMKTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~el-i~~l~~~~~~~G~~ls~~~A~l~lr---gL~tl~~R~e~~~~na~~La~~L 424 (466)
.+++.|+||.++.+|. +.||++++++. .+.+++.+.. ...+......+.. ..+.+..++++..++.+++.+.|
T Consensus 206 ~i~~~S~SK~~~l~Gl-R~G~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l 282 (355)
T d1lc5a_ 206 IWVLRSLTKFYAIPGL-RLGYLVNSDDAAMARMRRQQMP--WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL 282 (355)
T ss_dssp EEEEEESTTTTTCTTT-CCEEEECCCHHHHHHHHHHSCT--TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccccccccccc-cccceeccchhhhHHHHhhcCC--ccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 5999999999997774 57888887654 4555544322 2334444444333 34456677778888889999999
Q ss_pred HcCCCcE
Q 012321 425 EAHPKVK 431 (466)
Q Consensus 425 ~~~p~V~ 431 (466)
.+.+.+.
T Consensus 283 ~~~~~~~ 289 (355)
T d1lc5a_ 283 CQLPLLT 289 (355)
T ss_dssp HTSTTEE
T ss_pred hhcCCcE
Confidence 9987764
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.75 E-value=7.5e-17 Score=163.00 Aligned_cols=209 Identities=11% Similarity=0.102 Sum_probs=136.1
Q ss_pred HHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC----
Q 012321 212 TVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---- 283 (466)
Q Consensus 212 ~~~Lee~lA~l~g~---e~~v~~~SG-~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~---- 283 (466)
++++.+.+.+..|. .+.|++++| ++++..++.+++++||+|++++|+|......+ ...|.++..++..
T Consensus 77 R~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~----~~~g~~~~~v~~~~~~~ 152 (403)
T d1wsta1 77 RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAF----KYYDPEFISIPLDDKGM 152 (403)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHH----hhccccceeEeecccCC
Confidence 44444555444443 345555555 49999999999999999999999999866444 3455555444321
Q ss_pred CHH-------HHHHhccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cch----hc
Q 012321 284 DME-------GLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA----LS 345 (466)
Q Consensus 284 D~e-------~Le~ai~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~----~~p----l~ 345 (466)
+.. ......++ .+.++++++|+||||.+++ +++|+++|++|+++||+|++|..... ..+ ..
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~ 231 (403)
T d1wsta1 153 RVDLLEEKLEELRKQGKR-VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDD 231 (403)
T ss_dssp CHHHHHHHHHHHHHTTCC-CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCS
T ss_pred ccccccccchhhhhcccc-ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCC
Confidence 221 12222222 3678888999999999986 56788889999999999999864321 111 12
Q ss_pred cCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHH--HHHh---h-HHHHHHHHHHHHHHHH
Q 012321 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL--IIRG---M-KTLHLRVQQQNSTALR 419 (466)
Q Consensus 346 ~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l--~lrg---L-~tl~~R~e~~~~na~~ 419 (466)
.+..+++.|+||.++ +| .+.||+++++++++.+...........+...... .... . +.+....+...++.+.
T Consensus 232 ~~~~i~~~S~SK~~~-~G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (403)
T d1wsta1 232 YGRVIYLGTFSKILA-PG-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDA 309 (403)
T ss_dssp SSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEccccceec-Cc-ccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHH
Confidence 345699999999985 55 5689999999999988776655443333332221 1111 1 1233344555666777
Q ss_pred HHHHHHcC
Q 012321 420 MAKILEAH 427 (466)
Q Consensus 420 La~~L~~~ 427 (466)
+.+.|.++
T Consensus 310 ~~~~L~~~ 317 (403)
T d1wsta1 310 MLEALEEY 317 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77777764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.75 E-value=2.9e-16 Score=160.10 Aligned_cols=211 Identities=18% Similarity=0.149 Sum_probs=161.9
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME 286 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e 286 (466)
.+..++||++||+++|.|.+++++||..|+..++.++ ..+||.|+.+...|.+.... ++..+.++..+...|.+
T Consensus 89 ~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g----~~ls~a~~~~f~Hnd~~ 164 (396)
T d2bwna1 89 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHNDVA 164 (396)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTTCHH
T ss_pred chHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchh----hhccccCceEeecchHH
Confidence 5678999999999999999999999999999999887 46889888888888764433 33345677778888888
Q ss_pred HHHHhcc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch---------hccCCcEEEec
Q 012321 287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---------LSLGADLVLHS 354 (466)
Q Consensus 287 ~Le~ai~---~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p---------l~~gaDivv~S 354 (466)
++++.++ +.+.++|++|...+..|.+.|+++|.+++++||++|++||+++.++...- +....|+++.|
T Consensus 165 ~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gT 244 (396)
T d2bwna1 165 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGT 244 (396)
T ss_dssp HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEE
T ss_pred HhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeec
Confidence 8777663 23467999999999999999999999999999999999999887654211 12346999999
Q ss_pred cccccccccCceEEEEEeChHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHcC
Q 012321 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 355 ~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~--~~G~~ls~~~A~l~lrgL~tl-----~~R~e~~~~na~~La~~L~~~ 427 (466)
++|.+|.. ||++.+++++++.++.... .+...++|..+..++..++-+ ..+.++..++...+.+.|.+.
T Consensus 245 lsKa~g~~----Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~ 320 (396)
T d2bwna1 245 LAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 320 (396)
T ss_dssp SSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc----ccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999976 5999999999999886544 455666665554444433322 223445566777777777654
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.4e-16 Score=162.65 Aligned_cols=214 Identities=18% Similarity=0.165 Sum_probs=166.6
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..+..++||+.|++++|.+.+++++||+.|+..++.++..++|.|++....|.+....+ ...+.++..+...|.++
T Consensus 88 ~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~----~~~~a~~~~~~~~d~~~ 163 (401)
T d1fc4a_ 88 TQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMQE 163 (401)
T ss_dssp CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHH----HTSCSEEEEECTTCHHH
T ss_pred CcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccc----cccCceEEEEcCCChHH
Confidence 35778899999999999999999999999999999999999999999999998865433 23345666677777777
Q ss_pred HHHhccC-----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------hhccCCcEEEe
Q 012321 288 LEAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLH 353 (466)
Q Consensus 288 Le~ai~~-----~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~---------pl~~gaDivv~ 353 (466)
+++.++. .++.+|++|...+..|.+.|+++|.++|++||++|++||+++.+.... .....+|+++.
T Consensus 164 le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~ 243 (401)
T d1fc4a_ 164 LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG 243 (401)
T ss_dssp HHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEE
T ss_pred HHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEe
Confidence 6665431 235799999999999999999999999999999999999987654321 11124789999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHH--HHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~--~~~G~~ls~~~A~l~lrgL~---tl~~R~e~~~~na~~La~~L~~~p 428 (466)
|++|.++|. .||++.+++++++.++... ..++..++|..+..++..++ ..+.+.++..++..++.+.|.+.+
T Consensus 244 tl~Ka~gg~---~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 244 TLGKALGGA---SGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp ESSSTTCSS---SCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ecccccccC---CcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccC
Confidence 999999765 3799999999999887543 24566666655544444433 345677888889999988888764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.74 E-value=2.1e-17 Score=170.24 Aligned_cols=215 Identities=13% Similarity=0.169 Sum_probs=146.0
Q ss_pred CccCCCCchhHHHHHHHHHhhh---CC----CcEEEeCCHH-HHHHHHHHHh--------ccCCCEEEEcCCCccchHHH
Q 012321 202 FEYGRYGNPTTVVVEEKMSALE---GA----ESTVIMASGM-SASTVMLLAL--------VPAGGHIVTTTDCYRKTRIF 265 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~---g~----e~~v~~~SG~-aAi~~al~al--------l~pGD~VLv~~~~y~~t~~~ 265 (466)
|.|....+....+|++.|++++ |. +.-|++++|+ ++|.+++.+| +.|||+||++.|.|......
T Consensus 92 y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~ 171 (425)
T d2hoxa1 92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ 171 (425)
T ss_dssp SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH
Confidence 5455444455567888888876 32 3458888887 9999999998 57899999999999875543
Q ss_pred HHhhcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-hh
Q 012321 266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-AL 344 (466)
Q Consensus 266 ~~~~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~-pl 344 (466)
. .++......+. .|.+.++++++++ ++++++++||||||.+.. +-.+++.+|.|++|..+.... +.
T Consensus 172 ~-~~~~~~~~~~~----~D~~~~~~~~~~~-~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~ 238 (425)
T d2hoxa1 172 T-KYFDKKGYVWA----GNAANYVNVSNPE-QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKY 238 (425)
T ss_dssp H-HHSCBTTEEEE----EEGGGGTTCSCGG-GEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCS
T ss_pred H-HHcCCCCCccC----CCHHHHHhhCCCC-ceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhh
Confidence 3 33332222222 2567777778774 999999999999998742 223689999999986543211 12
Q ss_pred ccCCcEEEeccccccccccCceEEEE-EeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---------------HHH
Q 012321 345 SLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------------LHL 408 (466)
Q Consensus 345 ~~gaDivv~S~sK~lgG~gdv~gG~v-vg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~t---------------l~~ 408 (466)
....+|++.|+||.++.+|++ .||+ +.++.+++++.+.......+.+...+..++..++. ++.
T Consensus 239 ~~~~~Ivl~S~SK~fglaGlR-iGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~ 317 (425)
T d2hoxa1 239 KADEDILLFTMSKFTGHSGSR-FGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF 317 (425)
T ss_dssp CBCCSEEEEEHHHHTSCGGGC-CEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHH
T ss_pred hcCCeEEEEeCHHhccCcchh-eeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 234579999999999988865 5765 45667778888776655444444444433333322 233
Q ss_pred HHHHHHHHHHHHHHHHHcCCCc
Q 012321 409 RVQQQNSTALRMAKILEAHPKV 430 (466)
Q Consensus 409 R~e~~~~na~~La~~L~~~p~V 430 (466)
..++..++...+.+.|++.+..
T Consensus 318 ~~~~l~~r~~~l~~~L~~~~~~ 339 (425)
T d2hoxa1 318 GFKKLRERWVNITALLDQSDRF 339 (425)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 3455667778888888876643
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.74 E-value=7.8e-17 Score=163.39 Aligned_cols=188 Identities=10% Similarity=0.072 Sum_probs=127.8
Q ss_pred HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC--CCceEEEEeCCC
Q 012321 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPT 306 (466)
Q Consensus 236 aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~--~~tklV~lesPs 306 (466)
.++..++.+++.+||+|++++|+|+.....+ ...|.++..++. .+.+.+.+.+.. ++++++++++|+
T Consensus 110 ~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~ 185 (401)
T d7aata_ 110 RVGANFLQRFFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH 185 (401)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCTTHHHHH----HHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSC
T ss_pred HHHHHhhHhhcCCCceEEEecCCCcchhhHH----HHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCC
Confidence 4677778889999999999999999866443 445777665542 257777666632 358999999999
Q ss_pred CCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----h------hcc-CCcEEEeccccccccccCceEEEEEe
Q 012321 307 NPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A------LSL-GADLVLHSATKFIGGHNDVLAGSISG 372 (466)
Q Consensus 307 NPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~~~----p------l~~-gaDivv~S~sK~lgG~gdv~gG~vvg 372 (466)
||||.+++ +++|+++|++|++++|.|++|....... + ... ..-+++.|++|.++.+|++ .|++++
T Consensus 186 NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-iG~~~~ 264 (401)
T d7aata_ 186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGER-AGAFTV 264 (401)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEE
T ss_pred CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccc-cceeec
Confidence 99999985 6789999999999999999997654321 1 011 2247889999999999865 678877
Q ss_pred ChHHHHHHHHHHH-------HhCCCchHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 373 SGKLVTQIRNLHH-------VLGGALNPNAAYLIIRG----------MKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 373 ~~eli~~l~~~~~-------~~G~~ls~~~A~l~lrg----------L~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
..++++.+.+... ....+.+...+..+... .+.+....+++.++++.+.+.|+++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T d7aata_ 265 ICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7665554433221 11122233322222111 22334445566778888999998864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.73 E-value=1.1e-16 Score=166.06 Aligned_cols=218 Identities=16% Similarity=0.151 Sum_probs=150.9
Q ss_pred CCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 200 ~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
++..|+ ++|+..+||+++++++|.+.+++++||++|+.+++++++++||+|+.....+ .+...+.. .|.....
T Consensus 67 GDd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~-~~~~~i~~----~g~~~~~ 139 (456)
T d1c7ga_ 67 GDEAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFT-TTRFHQEK----NGATFVD 139 (456)
T ss_dssp CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCH-HHHHHHHH----TTEEEEE
T ss_pred cchhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchH-HHHHHHHH----cCceeee
Confidence 445677 6899999999999999999999999999999999999999999998765533 33222211 1222211
Q ss_pred e---------------CCCCHHHHHHhccCC---CceEEEEeCCCCCCc-ccc---cHHHHHHHHHhcCCEEEEeCCCCC
Q 012321 280 I---------------DPADMEGLEAALNNN---NVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCIDGTFAT 337 (466)
Q Consensus 280 v---------------d~~D~e~Le~ai~~~---~tklV~lesPsNPtG-~v~---dl~~I~ela~~~gillIvD~t~a~ 337 (466)
+ ...|+++|+++|+++ ++.+|++++|+|+.| .+. ++++|.++|++||+.+++|++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~ 219 (456)
T d1c7ga_ 140 IVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV 219 (456)
T ss_dssp CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred ccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence 1 124899999988642 367999999999975 444 578899999999999999998532
Q ss_pred C-----------Cccc-h------hccCCcEEEeccccccccccCceEEEEEeC-hHHHHHHHHHHHHhCC-----CchH
Q 012321 338 P-----------LNQK-A------LSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-----ALNP 393 (466)
Q Consensus 338 ~-----------~~~~-p------l~~gaDivv~S~sK~lgG~gdv~gG~vvg~-~eli~~l~~~~~~~G~-----~ls~ 393 (466)
. +... . .-..+|+++.|++|.++++. ||+++++ ++++++++......++ .+..
T Consensus 220 ~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~ 296 (456)
T d1c7ga_ 220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAG 296 (456)
T ss_dssp HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCH
T ss_pred cchhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhhH
Confidence 1 1111 0 11237999999999998764 7888875 5677777765544332 1222
Q ss_pred HHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012321 394 NAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 394 ~~A~l~lrgL~tl--~~R~e~~~~na~~La~~L~~~ 427 (466)
.....+..++... ...+++..+++++|.+.|++.
T Consensus 297 ~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~ 332 (456)
T d1c7ga_ 297 RDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA 332 (456)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222233221 234556677888999999886
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.72 E-value=7.9e-17 Score=166.17 Aligned_cols=220 Identities=12% Similarity=0.010 Sum_probs=143.7
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe--CC--
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--DP-- 282 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v--d~-- 282 (466)
++....++|+.+|+++|++++++++||+ +++.+++.+++++||+||+++.+|.+.+.... .+...+..+... +.
T Consensus 64 ~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~~~~~~~~~~~~~~g 142 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAGGRPVYLQTNRNPYG 142 (462)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTCCEEEEECEEECTTC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhcCCceeeeccccccc
Confidence 4567889999999999999999999998 56777788899999999999999998764332 232223333222 11
Q ss_pred ---------CCHHH---------HHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccch-
Q 012321 283 ---------ADMEG---------LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA- 343 (466)
Q Consensus 283 ---------~D~e~---------Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~p- 343 (466)
.+.+. +++++..+ +.++++.+.+|..|.+.|+++|+++||++|++|++|++++.+....+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~ 221 (462)
T d1c4ka2 143 FIGGIYDSDFDEKKIRELAAKVDPERAKWKR-PFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM 221 (462)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSC-CBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred ccCCCChHHhhHHHHHhhhhhhcHHhhhccC-CceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCc
Confidence 12222 33344443 56666667778899999999999999999999999999876433211
Q ss_pred -------------hccCCcEEEeccccccccccCceEEEEEeChHHH---------HHHHHHHHHhCCC--chHHHH---
Q 012321 344 -------------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGA--LNPNAA--- 396 (466)
Q Consensus 344 -------------l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli---------~~l~~~~~~~G~~--ls~~~A--- 396 (466)
...++|++++|+||++++++ .++++..+++.+ +.++.....+..+ .....+
T Consensus 222 ~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~ 299 (462)
T d1c4ka2 222 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299 (462)
T ss_dssp GGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred CCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHH
Confidence 12245999999999999886 345555444332 2333332222211 111111
Q ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 397 -YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 397 -~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
.............+++..++++++.+.|++.+...
T Consensus 300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~ 335 (462)
T d1c4ka2 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMF 335 (462)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11111122234446677888999999998876543
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.72 E-value=1.8e-16 Score=159.24 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=171.0
Q ss_pred chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCC--CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC--
Q 012321 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAG--GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~al-l~pG--D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~-- 283 (466)
.|.+++||+++++++|.+.+++++||++|+.+++.++ +.+| |+|+++..+|..+...+ ...|.+..++|.+
T Consensus 30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai----~~~G~~pv~vDi~~~ 105 (371)
T d2fnua1 30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKND 105 (371)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCTT
T ss_pred CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceee----eccCccccccccccc
Confidence 4889999999999999999999999999999999987 3444 58999999998876433 3368888888743
Q ss_pred ---CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhc--cCCcEEEecc--c
Q 012321 284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALS--LGADLVLHSA--T 356 (466)
Q Consensus 284 ---D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~--~gaDivv~S~--s 356 (466)
+.+++++.++++ |++|++ .+..|...|+++|.++|+++|+++|.|++++.+....... ..-|+.+.|+ +
T Consensus 106 ~~~~~~~~~~~~~~~-t~avi~---vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~ 181 (371)
T d2fnua1 106 GNIDELALEKLINER-TKAIVS---VDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI 181 (371)
T ss_dssp SSBCGGGSGGGCCTT-EEEEEE---ECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred ccccchhhhhhccch-hhcccc---ccccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccc
Confidence 467788888874 999987 4577999999999999999999999999987765433222 2247778777 7
Q ss_pred cccccccCceEEEEEeC-hHHHHHHHHHHHH----------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012321 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV----------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419 (466)
Q Consensus 357 K~lgG~gdv~gG~vvg~-~eli~~l~~~~~~----------------~G~~ls~~~A~l~lrgL~tl~~R~e~~~~na~~ 419 (466)
|.+...+ ||+++++ +++.++++..+.. +...++.+.|.+++..|+.++..+++..+++..
T Consensus 182 K~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~ 258 (371)
T d2fnua1 182 KPITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT 258 (371)
T ss_dssp SSSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhh
Confidence 9988765 6777775 5778888765431 123477888999999999999999999999999
Q ss_pred HHHHHHcCCCcEEE
Q 012321 420 MAKILEAHPKVKRV 433 (466)
Q Consensus 420 La~~L~~~p~V~~V 433 (466)
+.+.|++.+.+...
T Consensus 259 y~~~l~~~~~~~~~ 272 (371)
T d2fnua1 259 YDRIFKDNPYFTPL 272 (371)
T ss_dssp HHHHHTTCSSEEES
T ss_pred hccccccccccccc
Confidence 99999998876543
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.67 E-value=1.1e-15 Score=156.17 Aligned_cols=206 Identities=15% Similarity=0.153 Sum_probs=146.1
Q ss_pred HHHHHhhhCCCc-EEEeCCHH-HHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--------CC
Q 012321 216 EEKMSALEGAES-TVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--------PA 283 (466)
Q Consensus 216 ee~lA~l~g~e~-~v~~~SG~-aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--------~~ 283 (466)
...+.++.|.+. +.++.+|+ +++.+++++.. .++++|++++..|.+....+ ...|+....++ ..
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~----~~~g~~~~~v~~~~~~~~~~~ 194 (434)
T d2z67a1 119 LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAV----SFVGMNMRLVETVLDGDRVYV 194 (434)
T ss_dssp HHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETTEEEC
T ss_pred HHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHH----HHhCCcceEEEeecCCCccCC
Confidence 344667777744 44444444 66666666653 47899999999999866544 23455544443 25
Q ss_pred CHHHHHHhccC----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc------cchhccCCcEEEe
Q 012321 284 DMEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLH 353 (466)
Q Consensus 284 D~e~Le~ai~~----~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~------~~pl~~gaDivv~ 353 (466)
|+++|+++|++ .++.+|++++|++++|.+.|+++|+++|+++|+++++|++++.... ..+...|+|+++.
T Consensus 195 d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~ 274 (434)
T d2z67a1 195 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVS 274 (434)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEE
T ss_pred CHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEE
Confidence 89999999864 2478999999999999999999999999999999999999976542 3356778999999
Q ss_pred ccccccccccCceEEEE-EeChHHHHHHHHHHHHhCCCchHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 354 SATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLI--IRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~v-vg~~eli~~l~~~~~~~G~~ls~~~A~l~--lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
|+||+++++.+ +|++ +.++++++++...............+|.. ..+.+.+..+.++..++++++.+.|++.
T Consensus 275 s~hK~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l 349 (434)
T d2z67a1 275 SSDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL 349 (434)
T ss_dssp EHHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccCCC--ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence 99999988753 3444 45667777766544333333333444443 3345566677788888888888888764
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=6.6e-16 Score=154.34 Aligned_cols=168 Identities=18% Similarity=0.136 Sum_probs=130.6
Q ss_pred ccCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCccchHHHHHhhcccCCcE
Q 012321 203 EYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (466)
Q Consensus 203 ~Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~a----ll~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~ 276 (466)
.+++......++.++++++++|+ ++.++++++++++..++.. ...+|+.|++....|+...... ..++..|++
T Consensus 37 ~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~~ 115 (376)
T d1eg5a_ 37 GMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGFK 115 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcCCE
Confidence 33333445566778999999997 4677778888998888754 3577888888877777655444 456667999
Q ss_pred EEEeCC-----CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCc-cchhccCC
Q 012321 277 ATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLN-QKALSLGA 348 (466)
Q Consensus 277 v~~vd~-----~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~--~gillIvD~t~a~~~~-~~pl~~ga 348 (466)
++.++. .|+++++++++++ |++|++++++|+||.+.|++++.++++. .|+++++|.++..+.. .+..++++
T Consensus 116 v~~vp~~~~~~id~~~l~~~i~~~-t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~ 194 (376)
T d1eg5a_ 116 VKYVPVDSRGVVKLEELEKLVDED-TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEV 194 (376)
T ss_dssp EEECCBCTTSCBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCC
T ss_pred EEEEcCCCCCeECHHHHHHhcCCC-ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCc
Confidence 988753 4799999999985 9999999999999999999999999855 4999999999876643 45556789
Q ss_pred cEEEeccccccccccCceEEEEEeChH
Q 012321 349 DLVLHSATKFIGGHNDVLAGSISGSGK 375 (466)
Q Consensus 349 Divv~S~sK~lgG~gdv~gG~vvg~~e 375 (466)
|+++.|++||++++| +|+++.+++
T Consensus 195 D~~~~s~~K~~gp~G---~~~l~~~~~ 218 (376)
T d1eg5a_ 195 DYASFSAHKFHGPKG---VGITYIRKG 218 (376)
T ss_dssp SEEEEEGGGGTSCTT---CEEEEECTT
T ss_pred cceecccceeecCCC---ceeEEeccC
Confidence 999999999988776 455555543
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=4.1e-15 Score=143.15 Aligned_cols=244 Identities=17% Similarity=0.191 Sum_probs=153.4
Q ss_pred cccCCCccCChHHHHHHHhcccCCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCC
Q 012321 178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTD 257 (466)
Q Consensus 178 ~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~~~ 257 (466)
++|.|.+.|+.+.+++..+...+.-.|+ .+|...+||++||+++|.+++++++||++|+.+++.++..+||.+++..+
T Consensus 4 ~~~~~~t~p~p~v~~A~~~a~~g~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~ 81 (343)
T d1m6sa_ 4 LRSDTVTKPTEEMRKAMAQAEVGDDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEAD 81 (343)
T ss_dssp CSCGGGCCCCHHHHHHHHTCCCCCGGGT--CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred cccccCCCCCHHHHHHHHhhhcCCcccC--CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceecccc
Confidence 3455666677766666554433333454 57999999999999999999999999999999999999999999999998
Q ss_pred CccchHHHHHhhcccCCcEEEEeC----CCCHHHHHHhccCC-----CceE-EEEeCCCCCCccccc---HHHHHHHHHh
Q 012321 258 CYRKTRIFIETVLPKMGITATVID----PADMEGLEAALNNN-----NVSL-FFTESPTNPFLRCVD---VKLVSDLCHK 324 (466)
Q Consensus 258 ~y~~t~~~~~~~l~~~gi~v~~vd----~~D~e~Le~ai~~~-----~tkl-V~lesPsNPtG~v~d---l~~I~ela~~ 324 (466)
.|......... ....+..+..++ ..|++.+++.++.. ++.. ++...++|+.|.+.+ +++|+++|++
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 160 (343)
T d1m6sa_ 82 SHIFWYEVGAM-AVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE 160 (343)
T ss_dssp CHHHHSSTTHH-HHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred ccceeeecccc-cccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHh
Confidence 87653221111 111122332232 24788888888643 2344 444456677777765 5678888899
Q ss_pred cCCEEEEeCCCCCCCc------cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHH--H
Q 012321 325 KGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA--A 396 (466)
Q Consensus 325 ~gillIvD~t~a~~~~------~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~--A 396 (466)
+|+++++|+++..+.. ........+..+.+.+|..+|. .+|++++..+.+..+...+...+....... +
T Consensus 161 ~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
T d1m6sa_ 161 HGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLA 237 (343)
T ss_dssp HTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHH
T ss_pred cCeEEEeccccccccccccccchhhhcccccccccccccccccc---ccccccccHHHHhhhHhhCcccccccchhHHHH
Confidence 9999999999754221 1111223455666666655554 367888888888777766665544333221 1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012321 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427 (466)
Q Consensus 397 ~l~lrgL~tl~~R~e~~~~na~~La~~L~~~ 427 (466)
............+.++..++..++.+.+.+.
T Consensus 238 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T d1m6sa_ 238 AAGIIALTKMVDRLKEDHENARFLALKLKEI 268 (343)
T ss_dssp HHHHHHHHHSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhhHHHHh
Confidence 1112222222233444555555566655543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.64 E-value=1.6e-14 Score=146.62 Aligned_cols=236 Identities=12% Similarity=0.056 Sum_probs=138.5
Q ss_pred cCChHHHHHHH-hcccCCCccCCCCchhHHHHHHHHHhhh----C----CCc-EEEeC-CHHHHHHHHH-------HHhc
Q 012321 185 FKKTAELIDFK-EKRRASFEYGRYGNPTTVVVEEKMSALE----G----AES-TVIMA-SGMSASTVML-------LALV 246 (466)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~Y~R~~~p~~~~Lee~lA~l~----g----~e~-~v~~~-SG~aAi~~al-------~all 246 (466)
++..++..... ......+.|+.. .-..+|+++++++. + .+. .++.+ +++.++..+. .+++
T Consensus 50 ~~~V~~a~~~~~~~~~~~~~Y~p~--~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (412)
T d1ajsa_ 50 LPVVRKVEQRIANNSSLNHEYLPI--LGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTN 127 (412)
T ss_dssp CHHHHHHHHHHHTCTTCCCCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSS
T ss_pred cHHHHHHHHHHHhCCCcCCCCCCC--CCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcC
Confidence 34444433332 223334556533 23445666666654 2 122 33333 3333333332 2347
Q ss_pred cCCCEEEEcCCCccchHHHHHhhcccCCcE---EEEe-C----CCCHHHHHHhc---cCCCceEEEEeCCCCCCccccc-
Q 012321 247 PAGGHIVTTTDCYRKTRIFIETVLPKMGIT---ATVI-D----PADMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD- 314 (466)
Q Consensus 247 ~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~---v~~v-d----~~D~e~Le~ai---~~~~tklV~lesPsNPtG~v~d- 314 (466)
.|||+|++++|+|+.....+.. .|.+ +... + ..|.+.+++.+ .+ +++++++++||||||.+++
T Consensus 128 ~pGd~Vlv~~P~y~~y~~~~~~----~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~il~~~P~NPTG~v~s~ 202 (412)
T d1ajsa_ 128 NKDTPVYVSSPTWENHNGVFTT----AGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE-FSIFVLHACAHNPTGTDPTP 202 (412)
T ss_dssp CCCSCEEEEESCCTHHHHHHHH----TTCSCEEEEECEETTTTEECHHHHHHHHHHSCT-TCEEEEESSSCTTTCCCCCH
T ss_pred CCCCEEEEeCCcchhhHHHHHH----cCCeEEEeecccccccccccHHHHHHHHHhccC-CcEEEEecCCCCCcCCCCCH
Confidence 9999999999999986655433 3432 2111 1 13566555543 34 4899999999999999986
Q ss_pred --HHHHHHHHHhcCCEEEEeCCCCCCCccch-----------hccCCcEEEeccccccccccCceEEEEEeChHHHHHHH
Q 012321 315 --VKLVSDLCHKKGAIVCIDGTFATPLNQKA-----------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 315 --l~~I~ela~~~gillIvD~t~a~~~~~~p-----------l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~ 381 (466)
+++|+++|++||+++|.|++|........ ......+++.|++|.++.+|+. .|++++..+.++.+.
T Consensus 203 e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~~~~ 281 (412)
T d1ajsa_ 203 EQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNER-VGNLTVVAKEPDSIL 281 (412)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC-EEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCC-ccccccchhHHHHHH
Confidence 78899999999999999999976543210 0112458889999999999865 577776654444333
Q ss_pred HHHH-------HhCCCchHHHHHHH---H-------HhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 382 NLHH-------VLGGALNPNAAYLI---I-------RGMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 382 ~~~~-------~~G~~ls~~~A~l~---l-------rgL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
+... ......+...+..+ + ...+.+....+++.++++.|.+.|+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~ 345 (412)
T d1ajsa_ 282 RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2221 11122222222211 1 1123344555667778888899998874
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.6e-15 Score=149.79 Aligned_cols=220 Identities=13% Similarity=0.039 Sum_probs=134.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhh----CC----Cc-EE-EeCCHHHH--HHHHHHHhccCCCEEEEcCCCccchHHHHHh
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALE----GA----ES-TV-IMASGMSA--STVMLLALVPAGGHIVTTTDCYRKTRIFIET 268 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~----g~----e~-~v-~~~SG~aA--i~~al~all~pGD~VLv~~~~y~~t~~~~~~ 268 (466)
.+.|+- ..-...|++.+++++ +. +. .. .+++|..+ +...+...+.+||+|++++|.|+.....+
T Consensus 62 ~~~Y~p--~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~-- 137 (396)
T d2q7wa1 62 TKNYLG--IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF-- 137 (396)
T ss_dssp CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH--
T ss_pred CCCCCC--CcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHH--
Confidence 344553 223445666666543 21 22 22 33343333 44444556789999999999999865443
Q ss_pred hcccCCcEEEEeCCC-------CHHHHHHh---ccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012321 269 VLPKMGITATVIDPA-------DMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF 335 (466)
Q Consensus 269 ~l~~~gi~v~~vd~~-------D~e~Le~a---i~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~ 335 (466)
...|.++..++.. +.+.+++. ..+ +++++++++|+||||.+++ +++|+++|+++++++|.|++|
T Consensus 138 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y 214 (396)
T d2q7wa1 138 --NSAGLEVREYAYYDAENHTLDFDALINSLNEAQA-GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAY 214 (396)
T ss_dssp --HHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT-TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred --HHcCCeeEecccccccccccccchHHHHHHHhcc-CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3456666555321 34444443 333 4889999999999999986 568999999999999999999
Q ss_pred CCCCccc-----hh-----ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-------HhCCCchHHHHHH
Q 012321 336 ATPLNQK-----AL-----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYL 398 (466)
Q Consensus 336 a~~~~~~-----pl-----~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-------~~G~~ls~~~A~l 398 (466)
....... .. .....+++.|++|.++.+|+. .|++++..+.++.+..... ....+.+...+.+
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 293 (396)
T d2q7wa1 215 QGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNER-VGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASV 293 (396)
T ss_dssp TTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred cccccCCccCchHhhhhhhhcccccccccccccccccCCC-ccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHH
Confidence 7654321 11 122348888999999998864 6777776655544433221 1222333333332
Q ss_pred HHH----------hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 399 IIR----------GMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 399 ~lr----------gL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
+.. ..+.+....+++.++++.+.+.|+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 333 (396)
T d2q7wa1 294 VATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp HHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 211 123344445566777888899998874
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.63 E-value=1.6e-14 Score=146.93 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=136.0
Q ss_pred CCCccCCCCchhHHHHHHHHHhhh----C----CCcEEE-eCCH-HHHHH--HHHHHhccCCCEEEEcCCCccchHHHHH
Q 012321 200 ASFEYGRYGNPTTVVVEEKMSALE----G----AESTVI-MASG-MSAST--VMLLALVPAGGHIVTTTDCYRKTRIFIE 267 (466)
Q Consensus 200 ~~~~Y~R~~~p~~~~Lee~lA~l~----g----~e~~v~-~~SG-~aAi~--~al~all~pGD~VLv~~~~y~~t~~~~~ 267 (466)
..+.|+-. .-..+|++.+++++ + .+..+. .++| ..++. ..+..++.+||+|++++|.|+.....+
T Consensus 65 ~~~~Y~p~--~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~- 141 (412)
T d1yaaa_ 65 YNHEYLGI--TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF- 141 (412)
T ss_dssp CCCCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-
T ss_pred cCCCCCCC--CCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHH-
Confidence 34556632 33456666666653 2 122322 2333 33333 334456789999999999999865433
Q ss_pred hhcccCCcEEEEeCC-------CCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012321 268 TVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF 335 (466)
Q Consensus 268 ~~l~~~gi~v~~vd~-------~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~ 335 (466)
...|.++..++. .+.+.+++.+.. ++++++++++|+||||.+++ +++|+++|+++++++|.|++|
T Consensus 142 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y 218 (412)
T d1yaaa_ 142 ---ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAY 218 (412)
T ss_dssp ---HTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ---HHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeeccee
Confidence 345655554432 256666655532 24789999999999999985 788999999999999999999
Q ss_pred CCCCccch--------------hccCCcEEEeccccccccccCceEEEEEeChHHHHHHH-----------HHHHHhCCC
Q 012321 336 ATPLNQKA--------------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-----------NLHHVLGGA 390 (466)
Q Consensus 336 a~~~~~~p--------------l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~-----------~~~~~~G~~ 390 (466)
........ .....-+++.|+||.++.+|+ +.||++++.++++.+. ......-.+
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (412)
T d1yaaa_ 219 QGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSN 297 (412)
T ss_dssp TTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSS
T ss_pred eecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcC-ceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 76543210 011234899999999999886 4788877654322111 111122233
Q ss_pred chHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 391 LNPNAAYLIIR----------GMKTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 391 ls~~~A~l~lr----------gL~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
.+.+.+.++.. ..+.++...+++.++++.+.+.|+++.
T Consensus 298 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g 345 (412)
T d1yaaa_ 298 PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33443333322 123345555667778888888888763
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.62 E-value=1.2e-15 Score=153.47 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh------ccCCCEEEEcCCCccchHHHHHhh-cccCCcEEEE
Q 012321 209 NPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL------VPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATV 279 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~al------l~pGD~VLv~~~~y~~t~~~~~~~-l~~~gi~v~~ 279 (466)
....+.+++++|++.|+ ++.+++.++++++..++... ..+|+.|++.+..|.+........ .+...+.+..
T Consensus 69 ~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
T d1qz9a_ 69 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL 148 (404)
T ss_dssp GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec
Confidence 35677899999999997 57888888888887765432 357888888888877654333222 2222222222
Q ss_pred eCCCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEeccccc
Q 012321 280 IDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKF 358 (466)
Q Consensus 280 vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~ 358 (466)
....+++.++++++++ |++|.+.+.+|.||.++|+++|+++||++|+++++|.+++.+.. .+....++|+++.|.+||
T Consensus 149 ~~~~~~~~~~~~i~~~-T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~ 227 (404)
T d1qz9a_ 149 RLVDSPEELPQAIDQD-TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY 227 (404)
T ss_dssp EEESSGGGHHHHCSTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred cccccchhHHHhcCCC-ceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhh
Confidence 2334678899999885 99999999999999999999999999999999999999887644 445567999999999999
Q ss_pred cccccCceEEEEEeChHHHHH
Q 012321 359 IGGHNDVLAGSISGSGKLVTQ 379 (466)
Q Consensus 359 lgG~gdv~gG~vvg~~eli~~ 379 (466)
+.++.. .+|+++.++++.+.
T Consensus 228 ~~~~~g-~~g~~~~~~~~~~~ 247 (404)
T d1qz9a_ 228 LNGGPG-SQAFVWVSPQLCDL 247 (404)
T ss_dssp TCCCTT-CCCEEEECTTTTTT
T ss_pred cccCCc-eEEEEEechhhhhh
Confidence 865432 35778777665544
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=9.9e-15 Score=149.09 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=142.4
Q ss_pred HHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC------
Q 012321 215 VEEKMSALEGA---ESTVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID------ 281 (466)
Q Consensus 215 Lee~lA~l~g~---e~~v~~~SG~-aAi~~al~al---l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd------ 281 (466)
+.+.+++++|. ...+++++|+ +++.+++.+. ..++++||++...|.+....+ ...|++...++
T Consensus 99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~----~~~g~~~~~v~~~~~~~ 174 (445)
T d3bc8a1 99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----VTAGFEPVVIENVLEGD 174 (445)
T ss_dssp HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETT
T ss_pred HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHH----HHcCCeeEEEEeeccCc
Confidence 44567777775 3566677776 4454444443 456799999999998866444 34566655554
Q ss_pred --CCCHHHHHHhccC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--c----hhcc-CCc
Q 012321 282 --PADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--K----ALSL-GAD 349 (466)
Q Consensus 282 --~~D~e~Le~ai~~---~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~--~----pl~~-gaD 349 (466)
..|+++|+++|++ .++.+|++++|+|++|.+.|+++|+++|+++|+++++|++++.+... . .... ++|
T Consensus 175 ~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd 254 (445)
T d3bc8a1 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID 254 (445)
T ss_dssp EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCC
T ss_pred ccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcc
Confidence 2489999988853 24889999999999999999999999999999999999998865421 1 1222 589
Q ss_pred EEEeccccccccccCceEEEEEe-ChHHHHHHHHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHc
Q 012321 350 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEA 426 (466)
Q Consensus 350 ivv~S~sK~lgG~gdv~gG~vvg-~~eli~~l~~~~~~~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~ 426 (466)
+++.|+||+++++.+ +|+++. ++++++++.......+........|..+. +.+.+...+++..+++..+.+.|++
T Consensus 255 ~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~ 332 (445)
T d3bc8a1 255 AFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK 332 (445)
T ss_dssp EEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCccccccCCC--CceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999887752 455555 55666666554444444444455555443 3444556666667777777776654
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.60 E-value=1.2e-14 Score=146.83 Aligned_cols=215 Identities=18% Similarity=0.217 Sum_probs=155.7
Q ss_pred CchhHHHHH----HHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhh-cccCCcEEEE--
Q 012321 208 GNPTTVVVE----EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATV-- 279 (466)
Q Consensus 208 ~~p~~~~Le----e~lA~l~g~e~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~-l~~~gi~v~~-- 279 (466)
+....+.+| ++..++++++.+-+ ..||+.|+.+++.++++|||+|+..+...++....-... ......++..
T Consensus 63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~ 142 (405)
T d1kl1a_ 63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG 142 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEec
Confidence 456666665 55678899876544 579999999999999999999999998877733110000 0001122222
Q ss_pred eC----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-----CCCccchhccCCcE
Q 012321 280 ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLNQKALSLGADL 350 (466)
Q Consensus 280 vd----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a-----~~~~~~pl~~gaDi 350 (466)
+| ..|.+++++.+...++++|++-.-. .....|++++.++|++.|++|++|-++. .+...+|++. +|+
T Consensus 143 ~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDv 219 (405)
T d1kl1a_ 143 VDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHF 219 (405)
T ss_dssp BCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSE
T ss_pred cchhcccccHHHHHHHHHhhCcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhh
Confidence 22 3589999998877779999984444 4566799999999999999999999963 4567889865 899
Q ss_pred EEeccccccccccCceEEEEEeChHHHHHHHHHHHH--hCCCchHHHHHHH---HHh-hHHHHHHHHHHHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLI---IRG-MKTLHLRVQQQNSTALRMAKIL 424 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--~G~~ls~~~A~l~---lrg-L~tl~~R~e~~~~na~~La~~L 424 (466)
|..|.||+|.|| +||+|++++++.+++.+.... .|+......|.++ ... ........++..+|++.|++.|
T Consensus 220 vt~tThKtlrGP---rgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L 296 (405)
T d1kl1a_ 220 VTTTTHKTLRGP---RGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL 296 (405)
T ss_dssp EEEESSSTTCCC---SCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccccCC---CCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 489999999988888765432 2332222222221 222 2456778889999999999999
Q ss_pred HcCC
Q 012321 425 EAHP 428 (466)
Q Consensus 425 ~~~p 428 (466)
.+..
T Consensus 297 ~~~G 300 (405)
T d1kl1a_ 297 QNEG 300 (405)
T ss_dssp HHTT
T ss_pred hcCC
Confidence 9875
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=3.1e-14 Score=143.15 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=112.4
Q ss_pred CCccCCC-Cch-hHHHHHHHHHhhhCC---CcEEEeCCHH--HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC
Q 012321 201 SFEYGRY-GNP-TTVVVEEKMSALEGA---ESTVIMASGM--SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (466)
Q Consensus 201 ~~~Y~R~-~~p-~~~~Lee~lA~l~g~---e~~v~~~SG~--aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~ 273 (466)
.+.|+.. |.| .++++.+.+.+..+. ...+++++|+ .++.+.+..++.+||.|++++|.|+.....+ +..
T Consensus 62 ~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~----~~~ 137 (394)
T d2ay1a_ 62 TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NFM 137 (394)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHH----HHc
Confidence 4567643 333 344444444433332 3455566665 3455666677899999999999999865443 334
Q ss_pred CcEEEEeCC-------CCHHHHHHh---ccCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012321 274 GITATVIDP-------ADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN 340 (466)
Q Consensus 274 gi~v~~vd~-------~D~e~Le~a---i~~~~tklV~lesPsNPtG~v~d---l~~I~ela~~~gillIvD~t~a~~~~ 340 (466)
|.++..++. .+.+++++. ..+ +++++++++||||||.+++ +++|+++|+++++++|.|++|.....
T Consensus 138 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~ 216 (394)
T d2ay1a_ 138 GLPVQTYRYFDAETRGVDFEGMKADLAAAKK-GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD 216 (394)
T ss_dssp TCCEEEEECEETTTTEECHHHHHHHHHTCCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSS
T ss_pred CCEEEEecccchhcccccchhHHHHHhhccc-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcc
Confidence 555444421 134444433 333 4789999999999999986 67899999999999999999976543
Q ss_pred cc----h-----h-ccCCcEEEeccccccccccCceEEEEEeChHHHHH
Q 012321 341 QK----A-----L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379 (466)
Q Consensus 341 ~~----p-----l-~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~ 379 (466)
.. + . ....-+++.|++|.++.+|+. .|++++....++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~~ 264 (394)
T d2ay1a_ 217 GLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER-TGCLLALCADAAT 264 (394)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC-EEEEEEECSSHHH
T ss_pred cccccchhhhhhhhhcccccccccccccccCCccc-ccchhhchhHHHH
Confidence 21 1 1 112347788999999988865 6777766544443
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.1e-15 Score=147.03 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe-----C
Q 012321 210 PTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-----D 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~v-----d 281 (466)
...+++++.|++++|.+ ..+++ +||+.++.+++..++.+||++++....+.+..... .....+..+..+ .
T Consensus 52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 129 (388)
T d1h0ca_ 52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVD--IGERIGARVHPMTKDPGG 129 (388)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHH--HHHHHC--CBCCBCCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeecc--ccccccccccccccCCcc
Confidence 45678899999999984 24554 57789999999999999999999988877654322 122222222222 1
Q ss_pred CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEeccccccc
Q 012321 282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 282 ~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~lg 360 (466)
..|.+++++.+...++++|++.+.+|.+|.+.|+++|.++||++|+++++|.+++.+. ..+...+|+|+++.|.+|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~ 209 (388)
T d1h0ca_ 130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALN 209 (388)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccccccc
Confidence 3467777776655458999999999999999999999999999999999999987663 355567799999999999999
Q ss_pred cccCceEEEEEeChHHHHHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l~ 381 (466)
|++ .+|+++.+++.++.+.
T Consensus 210 gp~--g~~~~~~~~~~~~~~~ 228 (388)
T d1h0ca_ 210 APP--GTSLISFSDKAKKKMY 228 (388)
T ss_dssp CCT--TCEEEEECHHHHHHHT
T ss_pred CCC--ceEEEeecHHHHHhhh
Confidence 987 3578888887776653
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=8.1e-15 Score=148.10 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=121.4
Q ss_pred cCChHHHHHHH-hcccCCCccCCCCchhHHHHHHHHHhhhCC--------CcEEEeCCHH----HHHHHHHHHhccCCCE
Q 012321 185 FKKTAELIDFK-EKRRASFEYGRYGNPTTVVVEEKMSALEGA--------ESTVIMASGM----SASTVMLLALVPAGGH 251 (466)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~Y~R~~~p~~~~Lee~lA~l~g~--------e~~v~~~SG~----aAi~~al~all~pGD~ 251 (466)
++...+..... ......+.|+- ..-..+|++.++++... +..+.+.+++ .++.+++..++.+||+
T Consensus 46 ~~~V~~A~~~l~~~~~~~~~Y~p--~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~ 123 (397)
T d3tata_ 46 LQAVAEAEARLNAQPHGASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESG 123 (397)
T ss_dssp CHHHHHHHHHHTTSCCSSBCCCC--TTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCC
T ss_pred cHHHHHHHHHHHhCcccCCCCCC--cccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCc
Confidence 34444443333 22333455663 33345677777776532 2333322222 3566677778899999
Q ss_pred EEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC--CCceEEEEeCCCCCCccccc---HHHHH
Q 012321 252 IVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVS 319 (466)
Q Consensus 252 VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~-------~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d---l~~I~ 319 (466)
|++++|+|+.....+ +..|.++..++. .|.+++.+.+.. .+++++++++|+||||.+++ +++|.
T Consensus 124 Vlv~~P~y~~y~~~~----~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~ 199 (397)
T d3tata_ 124 VWVSDPTWENHVAIF----AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVI 199 (397)
T ss_dssp CEECSSCCTTHHHHH----HTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHH
T ss_pred ceecccCccccHHHH----HHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHH
Confidence 999999999966444 445666666653 256666555432 24789999999999999986 67899
Q ss_pred HHHHhcCCEEEEeCCCCCCCccc-----hh----cc-CCcEEEeccccccccccCceEEEEEeChHHH
Q 012321 320 DLCHKKGAIVCIDGTFATPLNQK-----AL----SL-GADLVLHSATKFIGGHNDVLAGSISGSGKLV 377 (466)
Q Consensus 320 ela~~~gillIvD~t~a~~~~~~-----pl----~~-gaDivv~S~sK~lgG~gdv~gG~vvg~~eli 377 (466)
++|+++++++|.|++|....... .. .. ..-+++.|+||.++.+|+. .|++++...++
T Consensus 200 ~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-iG~~~~~~~~~ 266 (397)
T d3tata_ 200 EILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGER-VGGLSVMCEDA 266 (397)
T ss_dssp HHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTC-CBCCEEECSST
T ss_pred HHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCcc-ccccccchhHH
Confidence 99999999999999998654311 11 11 1238899999999998865 56776655443
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.9e-14 Score=144.56 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=153.8
Q ss_pred CchhHHHHH----HHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC--cEEEEe
Q 012321 208 GNPTTVVVE----EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI 280 (466)
Q Consensus 208 ~~p~~~~Le----e~lA~l~g~e~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~g--i~v~~v 280 (466)
+....+.+| ++..+++|++.+-+ ..||+.|+.+++.++++|||+|+..+..+++....-.. ....| .+...+
T Consensus 66 G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~-~~~~g~~~~~~~y 144 (416)
T d1dfoa_ 66 GCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSP-VNFSGKLYNIVPY 144 (416)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCT-TSHHHHHSEEEEE
T ss_pred CChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeecccccccccccccc-ccccCceEEEEec
Confidence 455555554 55677899865444 68999999999999999999999999998884321100 00001 122111
Q ss_pred --C---CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC-----CCccchhccCCcE
Q 012321 281 --D---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQKALSLGADL 350 (466)
Q Consensus 281 --d---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~-----~~~~~pl~~gaDi 350 (466)
| ..|.+++++.....++|+|++..-. .....|++++.++|++.|++|++|.++.. +...+|+.. +|+
T Consensus 145 ~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDv 221 (416)
T d1dfoa_ 145 GIDATGHIDYADLEKQAKEHKPKMIIGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHV 221 (416)
T ss_dssp CBCSSSSBCHHHHHHHHHHHCCSEEEEECSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSE
T ss_pred ccCCccCccHHHHHHHHHHhccceEEecccc--cccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cce
Confidence 2 3589999988877679999986444 56788999999999999999999999643 566888887 699
Q ss_pred EEeccccccccccCceEEEEEeC---hHHHHHHHHHHH--HhCCCchH-HHHH--HHHHhh-HHHHHHHHHHHHHHHHHH
Q 012321 351 VLHSATKFIGGHNDVLAGSISGS---GKLVTQIRNLHH--VLGGALNP-NAAY--LIIRGM-KTLHLRVQQQNSTALRMA 421 (466)
Q Consensus 351 vv~S~sK~lgG~gdv~gG~vvg~---~eli~~l~~~~~--~~G~~ls~-~~A~--l~lrgL-~tl~~R~e~~~~na~~La 421 (466)
|..|+||+|.||. ||+++++ +++.+++.+... ..|+.... .++. .+...+ ..+....++..+|++.|+
T Consensus 222 vt~tThKtlrGPr---ggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La 298 (416)
T d1dfoa_ 222 VTTTTHKTLAGPR---GGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 298 (416)
T ss_dssp EEEESSSTTCCCS---CEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhcccCCC---ceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999994 8999986 577777765443 22333322 2221 112223 345778889999999999
Q ss_pred HHHHcCC
Q 012321 422 KILEAHP 428 (466)
Q Consensus 422 ~~L~~~p 428 (466)
+.|.+..
T Consensus 299 ~~L~~~G 305 (416)
T d1dfoa_ 299 EVFLERG 305 (416)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 9999975
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=2.2e-13 Score=134.29 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHhhhCCCc----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---
Q 012321 210 PTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~----~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~--- 282 (466)
...+..++.++++.|.++ .++.+||+.++.+++..+..++|.+++....+.....................+.
T Consensus 33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (361)
T d1m32a_ 33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR 112 (361)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence 457889999999999832 3344678899999999998888887776665544332222222222222222221
Q ss_pred C--CHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 283 A--DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 283 ~--D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
. +.+.......+ ++++|.++..+|.||.+.|+++|.++||++|+++++|.+++.+.. .+..++++|+++.|.+|++
T Consensus 113 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l 191 (361)
T d1m32a_ 113 PDVQAIDAILNADP-TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCI 191 (361)
T ss_dssp CCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTT
T ss_pred ccchhhHHHHHhcc-CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccc
Confidence 1 23334444555 499999999999999999999999999999999999999886643 4556779999999999999
Q ss_pred ccccCceEEEEEeChHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQ 379 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~ 379 (466)
+|+.+ .|+++.+++..++
T Consensus 192 ~gp~G--~g~l~~~~~~~~~ 209 (361)
T d1m32a_ 192 QGVPG--FAFVIAREQKLAA 209 (361)
T ss_dssp CCCSS--EEEEEEEHHHHTT
T ss_pred cCCCC--ceEEEechhhhhh
Confidence 88753 5788877765533
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=3.4e-13 Score=134.44 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=146.6
Q ss_pred HHHHHHHHHhhhCC------CcEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-
Q 012321 212 TVVVEEKMSALEGA------ESTVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (466)
Q Consensus 212 ~~~Lee~lA~l~g~------e~~v~~~SG~aAi~~al~all---~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd- 281 (466)
.+++++.+.++++. +..++++||++++++++..++ ++||+|++....+.+.... ..+...+..+..+.
T Consensus 38 ~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~--~~~~~~~~~~~~~~~ 115 (382)
T d2bkwa1 38 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFA--DCLRSYGAQVDVVRP 115 (382)
T ss_dssp HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHH--HHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhh--hhccccccccccccc
Confidence 34455556666552 235566788899999999986 6899999988777664422 33444565555443
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCC-ccchhccCCcEEEe
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL-NQKALSLGADLVLH 353 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~--gillIvD~t~a~~~-~~~pl~~gaDivv~ 353 (466)
..+.+.+++++...+++++++...+|.||...|++.+.+.|+++ ++++++|.+++.+. ..+..++|+|+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~ 195 (382)
T d2bkwa1 116 LKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALT 195 (382)
T ss_dssp SSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEE
T ss_pred cCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEee
Confidence 23577787777655689999999999999999999999988776 59999999987653 45666789999999
Q ss_pred ccccccccccCceEEEEEeChHHHHHHHHHHHH--------------------------hCCCchHHHHHHHHHhhHH--
Q 012321 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------------LGGALNPNAAYLIIRGMKT-- 405 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~--------------------------~G~~ls~~~A~l~lrgL~t-- 405 (466)
|.+|+++|+.+ .|+++.++++++++...... ...+.+....+.+...|+.
T Consensus 196 s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~ 273 (382)
T d2bkwa1 196 ASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL 273 (382)
T ss_dssp ESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred cccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence 99999977653 58888888877665321110 0112332233333334443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 406 ---LHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 406 ---l~~R~e~~~~na~~La~~L~~~p~ 429 (466)
+..+.+++.+.++++.+.+.+.+.
T Consensus 274 ~~g~~~~~~~~~~l~~~l~~~l~~~~~ 300 (382)
T d2bkwa1 274 EEGLHKRWDLHREMSDWFKDSLVNGLQ 300 (382)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 344556667777888888876544
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=5.2e-14 Score=145.17 Aligned_cols=222 Identities=16% Similarity=0.104 Sum_probs=145.9
Q ss_pred CCCccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEc--------CCCccchHHHHHhhcc
Q 012321 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTT--------TDCYRKTRIFIETVLP 271 (466)
Q Consensus 200 ~~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~VLv~--------~~~y~~t~~~~~~~l~ 271 (466)
++..|+ ++|+..+||+++++++|.+.+++++||++|+..++.+++++||+++.. ...|..+... ...
T Consensus 66 gd~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~---~~~ 140 (467)
T d2v1pa1 66 GDEAFS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQG---HSQ 140 (467)
T ss_dssp CCCCSS--SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHH---HHH
T ss_pred cchhhc--CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHH---HHH
Confidence 345677 589999999999999999999999999999999999998877654332 2333332211 122
Q ss_pred cCCcEEEEeC---------------CCCHHHHHHhccC---CCceEEEEeCCCCCCc-ccc---cHHHHHHHHHhcCCEE
Q 012321 272 KMGITATVID---------------PADMEGLEAALNN---NNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIV 329 (466)
Q Consensus 272 ~~gi~v~~vd---------------~~D~e~Le~ai~~---~~tklV~lesPsNPtG-~v~---dl~~I~ela~~~gill 329 (466)
..|..+..++ ..|+++|++.+++ .++++|++|.++|..| .+. ++++|.++|++||++|
T Consensus 141 ~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l 220 (467)
T d2v1pa1 141 INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV 220 (467)
T ss_dssp HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence 2355555442 2378899888853 2378899998887664 444 5789999999999999
Q ss_pred EEeCCCCCC-----------Ccc-c------hhccCCcEEEeccccccccccCceEEEEEeChHHHHH-HHHHHH---Hh
Q 012321 330 CIDGTFATP-----------LNQ-K------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH---VL 387 (466)
Q Consensus 330 IvD~t~a~~-----------~~~-~------pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~-l~~~~~---~~ 387 (466)
|+|++...+ +.. . ..-..+|++..|.+|.++++. ||+++.+++.+.. .+..+. ..
T Consensus 221 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~ 297 (467)
T d2v1pa1 221 VMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQ 297 (467)
T ss_dssp EEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHT
T ss_pred EEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhccccccc
Confidence 999995321 000 0 011237899999999998874 7888887654332 222211 11
Q ss_pred -C----CCchHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012321 388 -G----GALNPN--AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK 429 (466)
Q Consensus 388 -G----~~ls~~--~A~l~lrgL~tl~~R~e~~~~na~~La~~L~~~p~ 429 (466)
+ ...... .+......+......+++..+++++|.+.|++...
T Consensus 298 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 346 (467)
T d2v1pa1 298 EGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV 346 (467)
T ss_dssp TSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 112222 22222222222345667778899999999998643
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.50 E-value=6.4e-13 Score=138.10 Aligned_cols=225 Identities=16% Similarity=0.178 Sum_probs=152.8
Q ss_pred CchhHHHHH----HHHHhhhCCC-----------cEEEeCCHHHHHHHHHHHhcc----------CC---------CEEE
Q 012321 208 GNPTTVVVE----EKMSALEGAE-----------STVIMASGMSASTVMLLALVP----------AG---------GHIV 253 (466)
Q Consensus 208 ~~p~~~~Le----e~lA~l~g~e-----------~~v~~~SG~aAi~~al~all~----------pG---------D~VL 253 (466)
..|....+| +++++++|.+ ..+++++|++|+..++.+... .| -.|+
T Consensus 107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~ 186 (476)
T d1js3a_ 107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186 (476)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence 345555555 4566777653 367888889888777754321 11 1477
Q ss_pred EcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCC-----CceEEEEeCCCCCCcccccHHHHHHHHH
Q 012321 254 TTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCH 323 (466)
Q Consensus 254 v~~~~y~~t~~~~~~~l~~~gi~v~~vd~-----~D~e~Le~ai~~~-----~tklV~lesPsNPtG~v~dl~~I~ela~ 323 (466)
+++..|.+.... +...|+.+..++. .|+++|+++|++. .+-+|+....++.+|.+.|+++|+++|+
T Consensus 187 ~s~~~H~Si~ka----~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~ 262 (476)
T d1js3a_ 187 ASDQAHSSVERA----GLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262 (476)
T ss_dssp EETTCCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred ecccccHHHHHH----HHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHH
Confidence 888888875543 3345666666643 4899999998642 2457888888999999999999999999
Q ss_pred hcCCEEEEeCCCCCCCcc----chhc---cCCcEEEeccccccccccCceEEEEEeCh-HHHHH--------HHHHHHH-
Q 012321 324 KKGAIVCIDGTFATPLNQ----KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQ--------IRNLHHV- 386 (466)
Q Consensus 324 ~~gillIvD~t~a~~~~~----~pl~---~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~--------l~~~~~~- 386 (466)
++|++++||.+|+..... +.+- ..+|.+..++||+++.+.+ +|+++.++ ..... +......
T Consensus 263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------C
T ss_pred hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhhhccccccc
Confidence 999999999998764331 1111 2479999999999998874 46665543 33221 1111000
Q ss_pred ------------hCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 387 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 387 ------------~G~~ls~~~A~l~lr--gL~tl~~R~e~~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
.+.....+..|+.++ |.+.+..++++..+.++++++.|+++|.++-+..|.+
T Consensus 341 ~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l 406 (476)
T d1js3a_ 341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL 406 (476)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS
T ss_pred cccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCce
Confidence 112233455666654 5677888899999999999999999999877666655
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.45 E-value=1.6e-12 Score=128.48 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
....+++++.|++++|.+ ..+++ ++|+.++.+++..++.+|+++++....|..... .......+.....+.
T Consensus 50 ~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 127 (377)
T d1vjoa_ 50 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRL--VDMAGRYGADVRTISKPWG 127 (377)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH--HHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhh--hhhhhhhcccccccccCCC
Confidence 456788899999999963 46665 557799999999999999999998887765432 223333344333332
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~l 359 (466)
..+.+..+....+.++++|.+.+-+|.||.+.|+++|.++||++|+++++|.+++.+. ..+...+++|+++.|.+|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~ 207 (377)
T d1vjoa_ 128 EVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGL 207 (377)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred CcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccc
Confidence 2244444444433358999999999999999999999999999999999999987654 45566779999999999999
Q ss_pred ccccCceEEEEEeChHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~ 381 (466)
+|++ .+|+++.+++.++...
T Consensus 208 ~gp~--g~~~~~~~~~~~~~~~ 227 (377)
T d1vjoa_ 208 GCSP--GASPFTMSSRAIEKLQ 227 (377)
T ss_dssp CSCS--SCEEEEECHHHHHHHH
T ss_pred cCCC--EEEEecchhhHHhhhh
Confidence 8887 3578888887766543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.45 E-value=6e-13 Score=136.67 Aligned_cols=214 Identities=17% Similarity=0.129 Sum_probs=150.7
Q ss_pred CchhHHHHHH----HHHhhhCCC-----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhc--ccC---
Q 012321 208 GNPTTVVVEE----KMSALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL--PKM--- 273 (466)
Q Consensus 208 ~~p~~~~Lee----~lA~l~g~e-----~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l--~~~--- 273 (466)
+....+++|. +..+++|.+ ..+=.-||+.|+.+++.++++|||+|+..+...++....- ... ...
T Consensus 71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~ 149 (470)
T d1rv3a_ 71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT 149 (470)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence 5667777764 447888875 2334579999999999999999999999887776632110 000 000
Q ss_pred --CcEEEEe--C----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-----CCCc
Q 012321 274 --GITATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLN 340 (466)
Q Consensus 274 --gi~v~~v--d----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a-----~~~~ 340 (466)
..+...+ + ..|.+++++.....++++|++-.-. .....|++++.++|++.|++|++|-++- .+..
T Consensus 150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~ 227 (470)
T d1rv3a_ 150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 227 (470)
T ss_dssp HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence 1122222 2 3488999988876679999985444 4566899999999999999999999964 4567
Q ss_pred cchhccCCcEEEeccccccccccCceEEEEEeChH---------------HHHHHHHHHH--HhCCC-chHHHHHH--HH
Q 012321 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHH--VLGGA-LNPNAAYL--II 400 (466)
Q Consensus 341 ~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e---------------li~~l~~~~~--~~G~~-ls~~~A~l--~l 400 (466)
++|+.. +|+|+.|+||+|.|| +||+|+++++ +.+++..... ..|+. +...++.. +.
T Consensus 228 ~sPl~~-aDvvt~tTHKtlrGP---rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ 303 (470)
T d1rv3a_ 228 PSPFEH-CHVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK 303 (470)
T ss_dssp CCGGGT-CSEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred CChhhe-eeeeeeehhhhccCC---cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH
Confidence 899976 799999999999999 4899998653 6666665442 22332 22232221 12
Q ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012321 401 RGM-KTLHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 401 rgL-~tl~~R~e~~~~na~~La~~L~~~p 428 (466)
..+ .......++..+|++.|++.|.++.
T Consensus 304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~G 332 (470)
T d1rv3a_ 304 QAMTPEFKEYQRQVVANCRALSAALVELG 332 (470)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 222 2567788899999999999999975
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.44 E-value=6.3e-13 Score=136.18 Aligned_cols=207 Identities=17% Similarity=0.127 Sum_probs=140.0
Q ss_pred HHHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHH--Hhh--cccCCc--EEEEe--C-
Q 012321 216 EEKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI--ETV--LPKMGI--TATVI--D- 281 (466)
Q Consensus 216 ee~lA~l~g~e~-----~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~--~~~--l~~~gi--~v~~v--d- 281 (466)
.++..++++++. .+=.-||+.|+.+++.++++|||+|+..+..+++....- ... ....|+ +...+ +
T Consensus 79 ~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~ 158 (463)
T d2a7va1 79 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP 158 (463)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT
T ss_pred HHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC
Confidence 566778899864 366689999999999999999999999888877743111 000 111122 11111 2
Q ss_pred ---CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCccchhccCCcEEEe
Q 012321 282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQKALSLGADLVLH 353 (466)
Q Consensus 282 ---~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-----a~~~~~~pl~~gaDivv~ 353 (466)
..|.+++++.....++++|++-.-. .....|++++.++|++.|++|++|-++ +.+..++|+.. +|+|..
T Consensus 159 ~~~~IDyd~~~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~ 235 (463)
T d2a7va1 159 KTGLIDYNQLALTARLFRPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTT 235 (463)
T ss_dssp TTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEE
T ss_pred CCCcCcHHHHHHHHhhcCCceEEecccc--cccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhc
Confidence 2489999988877679999985444 456679999999999999999999995 45677899976 799999
Q ss_pred ccccccccccCceEEEEEeCh---------------HHHHHHHHHHH--HhCCCc-hHHHHHH--HHHhh-HHHHHHHHH
Q 012321 354 SATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGAL-NPNAAYL--IIRGM-KTLHLRVQQ 412 (466)
Q Consensus 354 S~sK~lgG~gdv~gG~vvg~~---------------eli~~l~~~~~--~~G~~l-s~~~A~l--~lrgL-~tl~~R~e~ 412 (466)
|+||+|.|| +||+|++++ ++.+++..... ..|+.. ...++.. +...+ .......++
T Consensus 236 tTHKTlrGP---rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~q 312 (463)
T d2a7va1 236 TTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ 312 (463)
T ss_dssp ESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hhhhhhcCC---CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHH
Confidence 999999999 489999875 56667765433 223322 2222221 12222 356778889
Q ss_pred HHHHHHHHHHHHHcCC
Q 012321 413 QNSTALRMAKILEAHP 428 (466)
Q Consensus 413 ~~~na~~La~~L~~~p 428 (466)
..+|++.|++.|.++.
T Consensus 313 Vv~NAk~La~~L~~~G 328 (463)
T d2a7va1 313 VLKNARAMADALLERG 328 (463)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2.4e-12 Score=132.82 Aligned_cols=218 Identities=11% Similarity=-0.058 Sum_probs=148.9
Q ss_pred chhHHHHHH----HHHhhhCCC-------cEEEeCCHHHHHHHHHHHhcc-----------CC-CEEEEcCCCccchHHH
Q 012321 209 NPTTVVVEE----KMSALEGAE-------STVIMASGMSASTVMLLALVP-----------AG-GHIVTTTDCYRKTRIF 265 (466)
Q Consensus 209 ~p~~~~Lee----~lA~l~g~e-------~~v~~~SG~aAi~~al~all~-----------pG-D~VLv~~~~y~~t~~~ 265 (466)
-|...++|+ +|++++|.+ ..+++++|++|+.+++.+... .+ ..++++...|.+..
T Consensus 88 ~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~-- 165 (450)
T d1pmma_ 88 YPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWH-- 165 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHH--
T ss_pred CccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHH--
Confidence 355555554 678888852 268888999988887765421 12 24666666666533
Q ss_pred HHhhcccCCcEEEEeCC------CCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHH------HhcCCEEEEeC
Q 012321 266 IETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC------HKKGAIVCIDG 333 (466)
Q Consensus 266 ~~~~l~~~gi~v~~vd~------~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela------~~~gillIvD~ 333 (466)
+.++.+|++++.++. .|+++|+++++++ |.+|+...++|.||.+.|+++|.+++ +++|++++||.
T Consensus 166 --Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~-t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDA 242 (450)
T d1pmma_ 166 --KFARYWDVELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA 242 (450)
T ss_dssp --HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_pred --HHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhC-ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeeh
Confidence 455667888877752 4799999999985 99999999999999999988777764 66899999999
Q ss_pred CCCCCCc-c-chh------ccCCcEEEeccccccccccCceEEEEEeCh-HHHHHHHHHH-HHhC----------CC--c
Q 012321 334 TFATPLN-Q-KAL------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLH-HVLG----------GA--L 391 (466)
Q Consensus 334 t~a~~~~-~-~pl------~~gaDivv~S~sK~lgG~gdv~gG~vvg~~-eli~~l~~~~-~~~G----------~~--l 391 (466)
+++.+.. . .+. -.++|.+..|.|||+.++-+ .|+++.++ ++........ ..+| +. .
T Consensus 243 A~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~ 320 (450)
T d1pmma_ 243 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAG 320 (450)
T ss_dssp TTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSH
T ss_pred hhccceeeeechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchH
Confidence 9876532 1 111 12689999999999987753 46666653 3321110000 0011 11 1
Q ss_pred hHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Q 012321 392 NPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 392 s~~~A~l~l--rgL~tl~~R~e~~~~na~~La~~L~~~p~V~~V 433 (466)
.....|..+ .|.+.+...+++..++++++++.|+++|.++.+
T Consensus 321 ~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~ 364 (450)
T d1pmma_ 321 QVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI 364 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 223345443 456678888899999999999999999987654
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.42 E-value=2.8e-12 Score=127.62 Aligned_cols=169 Identities=19% Similarity=0.215 Sum_probs=129.1
Q ss_pred chhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 209 NPTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 209 ~p~~~~Lee~lA~l~g~e--~~v~~-~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
....+++++.|++++|.+ +++++ +||+.++.+++..++.+|+++++....+.+.... ......+.....+.
T Consensus 49 ~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~ 126 (388)
T d2ch1a1 49 FRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAV--EMSERYGADVRTIEGPPD 126 (388)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccch--hhhhhhcccccccccccc
Confidence 456778899999999973 56666 4678999999999999999999887777654322 22334444443332
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CccchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~-~~~~pl~~gaDivv~S~sK~l 359 (466)
..+.+.+++.+...+++++++.+-+|.+|.+.|+++|.++||++|+++++|.+.+.+ ...+..++++|+++.|.+|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~ 206 (388)
T d2ch1a1 127 RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVL 206 (388)
T ss_dssp SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CC
T ss_pred cccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEcccccc
Confidence 235666666655445899999999999999999999999999999999999997765 345566789999999999999
Q ss_pred ccccCceEEEEEeChHHHHHHH
Q 012321 360 GGHNDVLAGSISGSGKLVTQIR 381 (466)
Q Consensus 360 gG~gdv~gG~vvg~~eli~~l~ 381 (466)
+|+. .+|+++.+++.++++.
T Consensus 207 ~gp~--G~g~~~~~~~~~~~~~ 226 (388)
T d2ch1a1 207 GAPP--GITPISISPKALDVIR 226 (388)
T ss_dssp CCCS--SCEEEEECHHHHHHHH
T ss_pred CCCC--eEEEEeccHHHHHhhh
Confidence 9887 3588888887776554
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.2e-11 Score=120.91 Aligned_cols=224 Identities=18% Similarity=0.136 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc----------CCCEEEEcCCCccc-hHHHHH--------h
Q 012321 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRK-TRIFIE--------T 268 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~----------pGD~VLv~~~~y~~-t~~~~~--------~ 268 (466)
.++....+++.++++.+.+...+.+||++|+..++..... ...+++.....|++ +...+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~ 160 (404)
T d2byla1 81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 160 (404)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred ccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCccccc
Confidence 4667888899999999999999999999999998875421 23467766666665 222111 1
Q ss_pred hcccCCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC------
Q 012321 269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------ 338 (466)
Q Consensus 269 ~l~~~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~------ 338 (466)
.+....-.+..++..|++++++.+.++++.+|++|......|.+.+ +++|.++|+++|++||+||++...
T Consensus 161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc
Confidence 1112222455677889999999998766899999887766776654 899999999999999999996421
Q ss_pred CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHHH
Q 012321 339 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST 416 (466)
Q Consensus 339 ~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~--R~e~~~~n 416 (466)
..+.....-.||+ ++.|.+++.. ...|.+++++++.+.+..........-+|..+..++..|+.+.. -+++..+.
T Consensus 241 ~a~~~~gv~PDi~--~~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~ 317 (404)
T d2byla1 241 LAVDYENVRPDIV--LLGKALSGGL-YPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKL 317 (404)
T ss_dssp SGGGGGTCCCSEE--EECGGGGTTS-SCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred chhhhcCCCCCEE--EECchhhCCC-ccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHh
Confidence 1122233346888 4789998753 34688888888876654322111122356666666666665543 23444555
Q ss_pred HHHHHHHHHcC--CCcEEEe
Q 012321 417 ALRMAKILEAH--PKVKRVH 434 (466)
Q Consensus 417 a~~La~~L~~~--p~V~~V~ 434 (466)
..++.+.|++. +.|..|+
T Consensus 318 g~~l~~~l~~l~~~~i~~vR 337 (404)
T d2byla1 318 GIILRNELMKLPSDVVTAVR 337 (404)
T ss_dssp HHHHHHHHHTSCTTTEEEEE
T ss_pred hHHHHHHHHhhccccceeee
Confidence 56666666653 3355444
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.37 E-value=1.4e-10 Score=110.34 Aligned_cols=229 Identities=14% Similarity=0.063 Sum_probs=136.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEE
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~-~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~ 279 (466)
++..+.+.+|..+++++++++++|.+..++ ++||++|+..++..++.+++.+++....+....... ......+..+..
T Consensus 29 ~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 107 (345)
T d1v72a1 29 GQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECG-APEFFSNGAKLM 107 (345)
T ss_dssp SCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEE
T ss_pred cCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechh-hHHHhcCccccc
Confidence 344444578999999999999999986664 589999999999999999999888777765432211 111122333333
Q ss_pred eC-----CCCHHHHHHhccCCC-----c-eEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCC------
Q 012321 280 ID-----PADMEGLEAALNNNN-----V-SLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPL------ 339 (466)
Q Consensus 280 vd-----~~D~e~Le~ai~~~~-----t-klV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~------ 339 (466)
+. ..+++.+++.+.+.. + ..++...+.|+.+... +++++.++|+++|+++++|+++....
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~ 187 (345)
T d1v72a1 108 TVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC 187 (345)
T ss_dssp ECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC
T ss_pred ccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecccccc
Confidence 32 357899998886531 2 2344445556666544 57888889999999999999974321
Q ss_pred --ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCC--chHHHHHHH--HHhhHHHHHHHHHH
Q 012321 340 --NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLI--IRGMKTLHLRVQQQ 413 (466)
Q Consensus 340 --~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~--ls~~~A~l~--lrgL~tl~~R~e~~ 413 (466)
.........+.++.+..|...+.. ++.+.................+.. .....+... .........+..+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~ 264 (345)
T d1v72a1 188 SPAEMTWKAGVDALSFGATKNGVLAA---EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKA 264 (345)
T ss_dssp CTTTTTGGGTCCEEEECCGGGTCSSC---EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred CHHHhhccccccccccCccccccccc---cccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccch
Confidence 111122233445554444433322 333444443333333222222222 222222222 22333344556666
Q ss_pred HHHHHHHHHHHHcCCCcEEE
Q 012321 414 NSTALRMAKILEAHPKVKRV 433 (466)
Q Consensus 414 ~~na~~La~~L~~~p~V~~V 433 (466)
.++.+.+.+.|.++|.+..+
T Consensus 265 ~~~~~~~~~~l~~~~g~~~~ 284 (345)
T d1v72a1 265 NAAAQRLAQGLEGLGGVEVL 284 (345)
T ss_dssp HHHHHHHHHHHTTCTTEEEE
T ss_pred hhHHHHHHHHHHhcCCcEec
Confidence 77888899999999988543
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=1.3e-11 Score=122.88 Aligned_cols=166 Identities=12% Similarity=0.103 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHhhhCCC-c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC--CH
Q 012321 210 PTTVVVEEKMSALEGAE-S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--DM 285 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e-~-~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~--D~ 285 (466)
...+..++.|+++++.+ + .++.+||+.++.+++..++.+||+|++....+.+.+ +...+++++.++..++.. +.
T Consensus 33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~ 110 (348)
T d1iuga_ 33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT 110 (348)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCc
Confidence 45677788899998874 3 445678889999999999999999998877765533 234566677666655421 11
Q ss_pred HHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC--CEEEEeCCCCCCC-ccchhccCCcEEEeccccccccc
Q 012321 286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGH 362 (466)
Q Consensus 286 e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~g--illIvD~t~a~~~-~~~pl~~gaDivv~S~sK~lgG~ 362 (466)
..+++.... ++++|++.+..+.+|.+.|+++|.++|++++ +++++|.+.+.+. ..+...+++|+++.|.+|+++|+
T Consensus 111 ~~~~~~~~~-~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gp 189 (348)
T d1iuga_ 111 PRPEDVAKE-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCP 189 (348)
T ss_dssp CCTTTSCCS-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCC
T ss_pred ccccccccc-CCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecC
Confidence 112222233 4889999888889999999999999999875 7999999876543 34555678999999999999777
Q ss_pred cCceEEEEEeChHHHHHH
Q 012321 363 NDVLAGSISGSGKLVTQI 380 (466)
Q Consensus 363 gdv~gG~vvg~~eli~~l 380 (466)
.+ .|+++.+++.++++
T Consensus 190 pG--~~~v~~s~~~le~~ 205 (348)
T d1iuga_ 190 PG--LGFVALSPRALERL 205 (348)
T ss_dssp SC--EEEEEECHHHHHTC
T ss_pred Cc--eeeeeechHHHhhh
Confidence 63 58888888877653
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=8.7e-11 Score=118.53 Aligned_cols=221 Identities=14% Similarity=0.131 Sum_probs=146.5
Q ss_pred CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchH-HHH--------HhhcccC
Q 012321 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTR-IFI--------ETVLPKM 273 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~-~~~--------~~~l~~~ 273 (466)
..++....|.+.+.+.... +.+.+++||++|+..++... ......|+.....|++.. ... .......
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~ 155 (387)
T d1vefa1 76 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL 155 (387)
T ss_dssp SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC
T ss_pred cCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCC
Confidence 3567777777777776654 45778899999999988754 234568888888886632 111 1111112
Q ss_pred CcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----C--ccch
Q 012321 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----L--NQKA 343 (466)
Q Consensus 274 gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~----~--~~~p 343 (466)
.-.+.+++..|.+.|++.++++ +.+|++|......|.... +++|.++|+++|+++|+||++... . .+..
T Consensus 156 ~~~~~~~p~~d~~~l~~~~~~~-iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~ 234 (387)
T d1vefa1 156 VEPVEFIPYNDVEALKRAVDEE-TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 234 (387)
T ss_dssp SSCEEEECTTCHHHHHHHCCTT-EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred CCCceEeCCCCHHHHHHhcCCC-eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCccccc
Confidence 2345667888999999999875 999999877666676654 899999999999999999997532 2 2233
Q ss_pred hccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCC--chHHHHHHHHHhhHHHHH--HHHHHHHHHHH
Q 012321 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKTLHL--RVQQQNSTALR 419 (466)
Q Consensus 344 l~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~--ls~~~A~l~lrgL~tl~~--R~e~~~~na~~ 419 (466)
.....|+++ +.|.+++.- ..+.+++.+++++.+.... .|.+ .+|..+..++..|+.+.. ..++..+...+
T Consensus 235 ~~v~PDi~~--~gK~l~gG~--~~~~~~~~~~~~~~~~~~~--~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~ 308 (387)
T d1vefa1 235 FGIVPDILT--LAKALGGGV--PLGVAVMREEVARSMPKGG--HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPW 308 (387)
T ss_dssp HTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHHTSCTTS--SCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCcCCceee--ecccCCCCc--cccccccceeeeeccccCC--ccccCCCCcchhhhcccchhhcccccccchHhhhhHH
Confidence 344568887 569988753 3466667777665543322 2332 367777776666666642 24556666777
Q ss_pred HHHHHHcC--CCcEEEe
Q 012321 420 MAKILEAH--PKVKRVH 434 (466)
Q Consensus 420 La~~L~~~--p~V~~V~ 434 (466)
+.+.|++. +.|..|+
T Consensus 309 l~~~L~~l~~~~v~~vr 325 (387)
T d1vefa1 309 FMEKLRAIPSPKIREVR 325 (387)
T ss_dssp HHHHHHTSCCTTEEEEE
T ss_pred HHHHHHhcCCCceEEEe
Confidence 77888764 4454443
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.33 E-value=1.7e-10 Score=116.86 Aligned_cols=229 Identities=17% Similarity=0.195 Sum_probs=144.1
Q ss_pred CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc----------cCCCEEEEcCCCccchHHHHHhhccc----
Q 012321 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----------PAGGHIVTTTDCYRKTRIFIETVLPK---- 272 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all----------~pGD~VLv~~~~y~~t~~~~~~~l~~---- 272 (466)
..+.....+++.+..+.+.+.+.++.||++|+..++.... .....++.....|.+...........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~ 157 (404)
T d1z7da1 78 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT 157 (404)
T ss_dssp SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred cchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccc
Confidence 3456677888989999999999999999998887775432 11235777777776532221111000
Q ss_pred -----CCcEEEEeCCCCHHHHHHhccCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-----
Q 012321 273 -----MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----- 338 (466)
Q Consensus 273 -----~gi~v~~vd~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~----- 338 (466)
.--.+..++..+.+.++..+.+.++.+|++|......|.+.+ +++|.++|+++|++||+||++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~ 237 (404)
T d1z7da1 158 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 237 (404)
T ss_dssp --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred cCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc
Confidence 001233345667889988887766899999988877787765 899999999999999999997421
Q ss_pred -CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH-----HHHH
Q 012321 339 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-----RVQQ 412 (466)
Q Consensus 339 -~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~-----R~e~ 412 (466)
..+.....-.||++ ++|.+++.. ..+|++++++++.+.++..........+|..+..++..|+.+.. ++.+
T Consensus 238 ~~~~e~~gv~PDivt--~gK~l~gG~-~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~ 314 (404)
T d1z7da1 238 LLCVHHYNVKPDVIL--LGKALSGGH-YPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK 314 (404)
T ss_dssp SSGGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccccccCCCCCEEE--EcccccCCC-CCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhcc
Confidence 11233334468884 789998753 34788889998887655432111112356666665555544321 2222
Q ss_pred -HHHHHHHHHHHHHcCCCcEEEeCCCC
Q 012321 413 -QNSTALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 413 -~~~na~~La~~L~~~p~V~~V~~PgL 438 (466)
.....+.+.+.++++|.|..|+.-|+
T Consensus 315 ~~~~~~~~l~~~~~~~~~v~~vrg~Gl 341 (404)
T d1z7da1 315 LGGPFLENLKRELKDSKIVRDVRGKGL 341 (404)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEETT
T ss_pred chhHHHHHHHHHHhcCCCeEEEEeeCc
Confidence 22233456667778888887765544
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.33 E-value=1.6e-11 Score=125.94 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=134.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCE-------EEEcCCCccchHHHHHhhcccCC
Q 012321 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH-------IVTTTDCYRKTRIFIETVLPKMG 274 (466)
Q Consensus 202 ~~Y~R~~~p~~~~Lee~lA~l~g~e~~v~~~SG~aAi~~al~all~pGD~-------VLv~~~~y~~t~~~~~~~l~~~g 274 (466)
-.|+ ++|+..+|++++++++|.+.+++++||++|+..++..++++|++ ++... .|+.+...... ..|
T Consensus 69 ~~y~--~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~-~h~~t~~~~~~---~~g 142 (465)
T d1ax4a_ 69 EAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN-FHFDTTAAHVE---LNG 142 (465)
T ss_dssp CCSS--SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEES-SCCHHHHHHHH---HTT
T ss_pred hhhc--cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEecc-chhhhhHHHHH---HcC
Confidence 3466 68999999999999999999999999999999999998876654 33333 34333222111 123
Q ss_pred cEEEEe-----------C----CCCHHHHHHhccC---CCceEEEEeCCCCCCc-ccc---cHHHHHHHHHhcCCEEEEe
Q 012321 275 ITATVI-----------D----PADMEGLEAALNN---NNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCID 332 (466)
Q Consensus 275 i~v~~v-----------d----~~D~e~Le~ai~~---~~tklV~lesPsNPtG-~v~---dl~~I~ela~~~gillIvD 332 (466)
...... + ..|+++|+++|++ ..+.+++++.++|..| .+. ++++|.++|++||++||+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D 222 (465)
T d1ax4a_ 143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 222 (465)
T ss_dssp CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 222221 0 2378999988853 2366777777776654 334 4788999999999999999
Q ss_pred CCCCCCC-----------c-cc------hhccCCcEEEeccccccccccCceEEEEEeChH--HHHHHHHHHH-HhC---
Q 012321 333 GTFATPL-----------N-QK------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLHH-VLG--- 388 (466)
Q Consensus 333 ~t~a~~~-----------~-~~------pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~e--li~~l~~~~~-~~G--- 388 (466)
+++..+. . .. .....+|++..|.+|.+++++ +|+++.+++ +....+.... ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
T d1ax4a_ 223 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVT 299 (465)
T ss_dssp CTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTT
T ss_pred CcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCC
Confidence 9964211 0 00 011126899999999888775 678777643 2333322211 111
Q ss_pred -CCchHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcCC
Q 012321 389 -GALNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAKILEAHP 428 (466)
Q Consensus 389 -~~ls~~~A~l~lrgL~t--l~~R~e~~~~na~~La~~L~~~p 428 (466)
..+.......+...+.. ....+++..+++++|.+.|++..
T Consensus 300 ~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g 342 (465)
T d1ax4a_ 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG 342 (465)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 11122111111111111 13345666778889999998853
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=1.1e-09 Score=111.85 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=157.2
Q ss_pred hHHHHHHHHHhhhCCCcEEE-eCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHH
Q 012321 211 TTVVVEEKMSALEGAESTVI-MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~-~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd~~D~e~ 287 (466)
..-++++.|+++.|.+.+-+ ...|.+|....++.. ....+.+++...+|+.++......+...|+++..++..+...
T Consensus 109 ~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~ 188 (437)
T d1wyua1 109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT 188 (437)
T ss_dssp HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC
T ss_pred HHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccc
Confidence 45677999999999875433 345664443333322 235678999999999988777777778899999887654332
Q ss_pred HHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-CCCCccchhccCCcEEEecccccc------c
Q 012321 288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFI------G 360 (466)
Q Consensus 288 Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~-a~~~~~~pl~~gaDivv~S~sK~l------g 360 (466)
....+.++ +.+|++++|+ -.|.+.|+++|++++|+.|.++++|... +-.....|-++|+||++.+ +|.| |
T Consensus 189 ~~~~~~~~-~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~G 265 (437)
T d1wyua1 189 PLPEVGEE-VGAVVVQNPN-FLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFG 265 (437)
T ss_dssp CCCCCCTT-EEEEEEESSC-TTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGG
T ss_pred hhhhhccc-eeEEEEcccc-ccccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCC
Confidence 22335554 9999999996 5799999999999999999988887553 2234567889999999988 5543 4
Q ss_pred cccCceEEEEEeChHHHHHH----------------------------HHHHHHhCCC----chH--HHHHHHHHhhHHH
Q 012321 361 GHNDVLAGSISGSGKLVTQI----------------------------RNLHHVLGGA----LNP--NAAYLIIRGMKTL 406 (466)
Q Consensus 361 G~gdv~gG~vvg~~eli~~l----------------------------~~~~~~~G~~----ls~--~~A~l~lrgL~tl 406 (466)
||+ +|++.+++++...+ ++.+.....+ +-. ..+|+.+.|-+-|
T Consensus 266 GP~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL 342 (437)
T d1wyua1 266 GPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGL 342 (437)
T ss_dssp CSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCc---cccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccH
Confidence 443 58888877655332 1111111111 111 1245555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEeCCC--C-----C-CCcchHHHHhhc-CCc
Q 012321 407 HLRVQQQNSTALRMAKILEAHPKVKRVHYPG--L-----K-SHPEHHIATQQM-TGF 454 (466)
Q Consensus 407 ~~R~e~~~~na~~La~~L~~~p~V~~V~~Pg--L-----~-s~p~~~l~~~~~-~g~ 454 (466)
...-++...++.++++.|.+.+.++.+ +++ + . ..+..+++++.+ .|+
T Consensus 343 ~~ia~~a~~~A~yl~~~L~~~~g~~~~-~~~~~f~ef~v~~~~~~~~i~k~L~d~G~ 398 (437)
T d1wyua1 343 REVALKSVEMAHKLHALLLEVPGVRPF-TPKPFFNEFALALPKDPEAVRRALAERGF 398 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCEEC-SCSSBCSEEEEECSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCeecc-CCCCeeeEEEEECCCCHHHHHHHHHhCCC
Confidence 666677888999999999999888643 332 1 1 223456777765 443
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.10 E-value=3.3e-09 Score=108.01 Aligned_cols=215 Identities=16% Similarity=0.165 Sum_probs=136.9
Q ss_pred CCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHH---------HHhhccc-
Q 012321 206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF---------IETVLPK- 272 (466)
Q Consensus 206 R~~~p~~~~Lee~lA~l~g~-e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~---------~~~~l~~- 272 (466)
....+....+.+.+.++.+. +.+.++.||++|+..++.... ....+||.....|++.... ....+..
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~ 167 (427)
T d2gsaa_ 88 GAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSS 167 (427)
T ss_dssp SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSC
T ss_pred ccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCC
Confidence 33556677788888887665 567778899999999987542 3457888888888762110 0000110
Q ss_pred C------CcEEEEeCCCCHHHHHHhccC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC--
Q 012321 273 M------GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-- 338 (466)
Q Consensus 273 ~------gi~v~~vd~~D~e~Le~ai~~--~~tklV~lesPsNPtG~v~d----l~~I~ela~~~gillIvD~t~a~~-- 338 (466)
. ..+....+..|++++++.+++ .++.+|++|....-.|.+.+ +++|.++|+++|++||+||++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~ 247 (427)
T d2gsaa_ 168 PGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI 247 (427)
T ss_dssp SSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT
T ss_pred CCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccccccee
Confidence 0 113344566789999999975 35889999877666677765 999999999999999999997432
Q ss_pred -Cc--cchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH-HhC--CCchHHHHHHHHHhhHHHH--HHH
Q 012321 339 -LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLH--LRV 410 (466)
Q Consensus 339 -~~--~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~-~~G--~~ls~~~A~l~lrgL~tl~--~R~ 410 (466)
.. ..-.....||++ +.|.++|.- ..|++++++++++.+..... ..+ ...+|..+..++..|+.+. ...
T Consensus 248 g~~~~~~~~gi~PDi~~--~gK~lggG~--p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~ 323 (427)
T d2gsaa_ 248 AYGGVQEKFGVTPDLTT--LGKIIGGGL--PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTY 323 (427)
T ss_dssp BTTCHHHHTTCCCSEEE--ECGGGGTTS--CCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred cccchHHhcCCCHHHHh--hhhccCCCc--ceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHH
Confidence 11 122233468887 568887643 45677889988876643211 111 2345666666655555443 123
Q ss_pred HHHHHHHHHHHHHH
Q 012321 411 QQQNSTALRMAKIL 424 (466)
Q Consensus 411 e~~~~na~~La~~L 424 (466)
++..+..++|.+.|
T Consensus 324 ~~~~~~g~~l~~~L 337 (427)
T d2gsaa_ 324 EYLDQITKRLSDGL 337 (427)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 44444445554444
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.06 E-value=4.3e-09 Score=107.10 Aligned_cols=233 Identities=12% Similarity=0.146 Sum_probs=136.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcc-----
Q 012321 201 SFEYGRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP----- 271 (466)
Q Consensus 201 ~~~Y~R~~~p~~~~Lee~lA~l~--g~e~~v~~~SG~aAi~~al~al--l~pGD~VLv~~~~y~~t~~~~~~~l~----- 271 (466)
.|....+.++...+|.++|.++. +.+.+.+++||++|+..++... ....++|+.....|++.....-....
T Consensus 74 ~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~ 153 (431)
T d1zoda1 74 DHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRK 153 (431)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCS
T ss_pred cccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhccccccccc
Confidence 35555666777888989898876 3477888999999999988754 24457888888888774322211100
Q ss_pred cC---CcEEEEeCC--------------C---CHHHHHHhc---cCCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012321 272 KM---GITATVIDP--------------A---DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (466)
Q Consensus 272 ~~---gi~v~~vd~--------------~---D~e~Le~ai---~~~~tklV~lesPsNPtG~v~d----l~~I~ela~~ 324 (466)
.. ......++. . +.+.++..+ ..+++.+|++|....-.|.+.+ +++|.++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~ 233 (431)
T d1zoda1 154 GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA 233 (431)
T ss_dssp SSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH
T ss_pred ccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHh
Confidence 00 011111110 0 123332222 2335899999887655566543 8999999999
Q ss_pred cCCEEEEeCCCCC----CC--ccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhC--CCchHHHH
Q 012321 325 KGAIVCIDGTFAT----PL--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAA 396 (466)
Q Consensus 325 ~gillIvD~t~a~----~~--~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G--~~ls~~~A 396 (466)
+|++||.||++.. +. ...-...-.||++ +.|.+++.- ..+.+++.++..+.........+ ...+|..+
T Consensus 234 ~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~gG~--p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~ 309 (431)
T d1zoda1 234 RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGAGL--PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPA 309 (431)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHTTS--SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHH
T ss_pred cCceEEeccccccccccccccccccCCCCcchhc--ccccccccc--ccceeeeeecchhhhhcccccccCCCCCCcchH
Confidence 9999999999653 11 1222334468887 679998764 34566677777666543222122 23455555
Q ss_pred HHHHHhhHHHHH--HHHHHHH----HHHHHHHHHHcCCCcEEEeCCC
Q 012321 397 YLIIRGMKTLHL--RVQQQNS----TALRMAKILEAHPKVKRVHYPG 437 (466)
Q Consensus 397 ~l~lrgL~tl~~--R~e~~~~----na~~La~~L~~~p~V~~V~~Pg 437 (466)
..+...++.+.. .+++..+ ..+.+.+.++++|.|..|..-|
T Consensus 310 aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~G 356 (431)
T d1zoda1 310 AVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRG 356 (431)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecc
Confidence 544444433221 1222222 2333455566778877765443
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=9.4e-09 Score=104.73 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=136.1
Q ss_pred cCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cCCCEEEEcCCCccchHHHHHhhcc---
Q 012321 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIFIETVLP--- 271 (466)
Q Consensus 204 Y~R~~~p~~~~Lee~lA~l~g~--e~~v~~~SG~aAi~~al~all-------~pGD~VLv~~~~y~~t~~~~~~~l~--- 271 (466)
+.++.++....+.+++.+.... +.+.+.+||++|+..++.... ....+|+.....|.+..........
T Consensus 80 ~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~ 159 (429)
T d1s0aa_ 80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN 159 (429)
T ss_dssp CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred cCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcc
Confidence 4455566677777777777643 667788999999988876442 2235788888888763221111110
Q ss_pred -------cC-CcEEEE----------eCCCCHHHHHHhcc--CCCceEEEEeCCC-CCCccc-cc---HHHHHHHHHhcC
Q 012321 272 -------KM-GITATV----------IDPADMEGLEAALN--NNNVSLFFTESPT-NPFLRC-VD---VKLVSDLCHKKG 326 (466)
Q Consensus 272 -------~~-gi~v~~----------vd~~D~e~Le~ai~--~~~tklV~lesPs-NPtG~v-~d---l~~I~ela~~~g 326 (466)
.. ...... .+..+++++++.+. ..++.+|++|... +-.|.. .+ +++|.++|+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~g 239 (429)
T d1s0aa_ 160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred ccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence 00 001110 11123455554443 2348999998654 444443 33 899999999999
Q ss_pred CEEEEeCCCCCC------CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHH---HhC--CCchHHH
Q 012321 327 AIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---VLG--GALNPNA 395 (466)
Q Consensus 327 illIvD~t~a~~------~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~---~~G--~~ls~~~ 395 (466)
+++|+||++... ........-.||++ +.|.+++.. ...|++++++++.+.+..... ..+ ...+|..
T Consensus 240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~ 316 (429)
T d1s0aa_ 240 ILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGT-MTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA 316 (429)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSS-SCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred cceehhhccccccccccccccccceecccccc--ccccccccc-ccccchhhHHHHHhccCCCCCcceeecCCCCCCccc
Confidence 999999996532 22333344568887 579997654 346888899998887653211 011 1235666
Q ss_pred HHHHHHhhHHHHH--HHHHHHHHHHHHHHHH---HcCCCcEEEeCCCC
Q 012321 396 AYLIIRGMKTLHL--RVQQQNSTALRMAKIL---EAHPKVKRVHYPGL 438 (466)
Q Consensus 396 A~l~lrgL~tl~~--R~e~~~~na~~La~~L---~~~p~V~~V~~PgL 438 (466)
+..++..|+.+.. -+++..+...+|.+.| .+++.|..|+.-|+
T Consensus 317 ~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl 364 (429)
T d1s0aa_ 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGA 364 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETT
T ss_pred chhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEeeccc
Confidence 6665555555432 2344444455555555 45566766654443
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.05 E-value=7.1e-09 Score=96.75 Aligned_cols=217 Identities=14% Similarity=0.046 Sum_probs=122.7
Q ss_pred CCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC---
Q 012321 207 YGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--- 281 (466)
Q Consensus 207 ~~~p~~~~Lee~lA~l~g~e--~~v~~~SG~aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd--- 281 (466)
..++..+++++++++++|.+ +.+++++|++|+..++..+..+++++++....|......... .......+....
T Consensus 32 ~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 110 (340)
T d1svva_ 32 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAI-EATGHKVVTAPCPDG 110 (340)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHH-HHTTCCEEEECCTTS
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccc-cccceeeeecccccc
Confidence 36888999999999999974 466667888999999999999999999988777653221111 111122222222
Q ss_pred CCCHHHHHHhcc------CCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc--------cchh
Q 012321 282 PADMEGLEAALN------NNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN--------QKAL 344 (466)
Q Consensus 282 ~~D~e~Le~ai~------~~~tklV~lesPsNPtG~v~---dl~~I~ela~~~gillIvD~t~a~~~~--------~~pl 344 (466)
..+.+...++.. ..++.++++..++ ..|.+. ++..+.+.|+++|.++++|+++..... ....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~ 189 (340)
T d1svva_ 111 KLRVADIESALHENRSEHMVIPKLVYISNTT-EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI 189 (340)
T ss_dssp CCCHHHHHHHHHHSCSTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH
T ss_pred cccchhHHHHhhhhhcccCCcceeeeecccc-cccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccc
Confidence 122222222211 1123444444444 445444 466788999999999999999642111 1111
Q ss_pred ccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCC-Cch-HH--HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012321 345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG-ALN-PN--AAYLIIRGMKTLHLRVQQQNSTALRM 420 (466)
Q Consensus 345 ~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~-~ls-~~--~A~l~lrgL~tl~~R~e~~~~na~~L 420 (466)
....++...+..|..++.. +++..................+. ... .. .+++..........+.++..+++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~ 266 (340)
T d1svva_ 190 ARLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAIL 266 (340)
T ss_dssp HHHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred cccceeeecCCcccccccc---ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Confidence 2224566666666655543 45555555444443333332222 211 11 22222222223344556667778888
Q ss_pred HHHHHcCC
Q 012321 421 AKILEAHP 428 (466)
Q Consensus 421 a~~L~~~p 428 (466)
.+.|+..+
T Consensus 267 ~~~l~~~g 274 (340)
T d1svva_ 267 KAGLEACG 274 (340)
T ss_dssp HHHHHHTT
T ss_pred HHHHhcCC
Confidence 88888754
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.4e-09 Score=108.89 Aligned_cols=227 Identities=14% Similarity=0.119 Sum_probs=134.6
Q ss_pred CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcc----------c
Q 012321 208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP----------K 272 (466)
Q Consensus 208 ~~p~~~~Lee~lA~l~g~---e~~v~~~SG~aAi~~al~all--~pGD~VLv~~~~y~~t~~~~~~~l~----------~ 272 (466)
.++...+|.++|.++... +.+.+++||++|+..++.... ....+|+.....|++.......+-. .
T Consensus 81 ~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~ 160 (425)
T d1sffa_ 81 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGL 160 (425)
T ss_dssp ECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCC
T ss_pred cCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCccc
Confidence 466777888888888753 456778999999998887542 3446788888888774332211110 0
Q ss_pred CCcEEEEe--CC--C---------CHHHHH-HhccCCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEeCC
Q 012321 273 MGITATVI--DP--A---------DMEGLE-AALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGT 334 (466)
Q Consensus 273 ~gi~v~~v--d~--~---------D~e~Le-~ai~~~~tklV~lesPsNPtG~v~-d---l~~I~ela~~~gillIvD~t 334 (466)
........ +. . +.+++. ......++.+|++|......|... + ++.|.++|+++|++||+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV 240 (425)
T d1sffa_ 161 MPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEV 240 (425)
T ss_dssp CCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred ccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccc
Confidence 00111111 10 0 011111 112223478999988765566554 2 78999999999999999999
Q ss_pred CCC----C--CccchhccCCcEEEeccccccccccCceEEEEEeChHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH
Q 012321 335 FAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408 (466)
Q Consensus 335 ~a~----~--~~~~pl~~gaDivv~S~sK~lgG~gdv~gG~vvg~~eli~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~ 408 (466)
+.. + ..+.......||++ ++|.++|.- ..|++++++++++.+...........+|..+..++..|+.+..
T Consensus 241 ~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~gG~--P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~ 316 (425)
T d1sffa_ 241 QSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAGGF--PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 316 (425)
T ss_dssp TTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGTSS--CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCcchhhHHHhcCCCcccee--cccccCCCc--ceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 653 1 12333344578887 789998753 4677888888877654322111122456766666666665532
Q ss_pred --HHHHHHHH----HHHHHHHHHcCCCcEEEeCCCC
Q 012321 409 --RVQQQNST----ALRMAKILEAHPKVKRVHYPGL 438 (466)
Q Consensus 409 --R~e~~~~n----a~~La~~L~~~p~V~~V~~PgL 438 (466)
..++..+. ...+.+.++++|.+..|..-|+
T Consensus 317 ~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl 352 (425)
T d1sffa_ 317 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 352 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETT
T ss_pred hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEcccc
Confidence 12233333 3334555667888777765443
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.75 E-value=1.8e-08 Score=98.91 Aligned_cols=145 Identities=10% Similarity=0.016 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHhhhCCCc---EEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGAES---TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e~---~v~~~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
...+..++.|+++++.++ .+++++++ .++.+++..+..+|+++++....... ..+....+..|..+..+.
T Consensus 48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~--~~~~~~~~~~g~~~~~~~~~~~ 125 (361)
T d2c0ra1 48 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWA--SKALKEAKLIGDTHVAASSEAS 125 (361)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHH--HHHHHHHHHHSCEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhh--hhhhhhhhhcCceeeeeccccc
Confidence 456777999999999843 44444444 56677777788889988776543332 334455666777776653
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~-~~pl~~gaDivv~S~sK~l 359 (466)
..+++.+++.+..+ +.+++ +|.||.+.++++|.++|+++|+++++|.+.+.+.. .+..+ .|+.+.|.+|.+
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~v---~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~--~di~~~s~~k~~ 198 (361)
T d2c0ra1 126 NYMTLPKLQEIQLQD--NAAYL---HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNL 198 (361)
T ss_dssp TTCSCCCGGGCCCCT--TEEEE---EEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT
T ss_pred cccchhhhhhhcccC--cceEE---EEecccceecceEEEeeccCCceEEEEeecccccccccccc--ceeEEEeccccc
Confidence 33566777776654 34554 56789999999999999999999999999876543 33333 467778889999
Q ss_pred cccc
Q 012321 360 GGHN 363 (466)
Q Consensus 360 gG~g 363 (466)
++++
T Consensus 199 ~~~~ 202 (361)
T d2c0ra1 199 GPSG 202 (361)
T ss_dssp CCSS
T ss_pred cccc
Confidence 8887
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=3.7e-08 Score=95.30 Aligned_cols=156 Identities=10% Similarity=-0.021 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEe-CCHH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGAE--STVIM-ASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~-~SG~-aAi~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
...+..++.|+++++.+ ..+++ ++++ .++.+++..+..+++.+++....+.+.. +....+..++.+....
T Consensus 46 ~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 123 (360)
T d1bjna_ 46 QVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAAS--AIKEAKKYCTPNVFDAKVTV 123 (360)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTTTSEEEEEECEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhh--hHHHHhhcCccceeeccccC
Confidence 34678899999999984 24444 4444 5555666667788888887765554432 3345666776655443
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccchhccCCcEEEeccccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG 360 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~~~~pl~~gaDivv~S~sK~lg 360 (466)
..+.+.+++.+.. +++++.+...+|-||...++..+. ++.+++++++|.+.+.+.. +....+.|+++.|.+|.++
T Consensus 124 ~~~~~~~~~~~~~~-~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~-~vd~~~~dv~~~ss~k~~~ 199 (360)
T d1bjna_ 124 DGLRAVKPMREWQL-SDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSR-PIDVSRYGVIYAGAQKNIG 199 (360)
T ss_dssp TTEEEECCGGGCCC-CSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSS-CCCGGGCSEEEEETTTTTS
T ss_pred CCcchhhhhhhhcc-CCceeEEEecccccccCcccccee--cccccceeeeeeeccccce-eeeeccceeEEEEcccccc
Confidence 1234455555555 478888888899999998887664 4678899999998765432 1122357999999999999
Q ss_pred cccCceEEEEEeC
Q 012321 361 GHNDVLAGSISGS 373 (466)
Q Consensus 361 G~gdv~gG~vvg~ 373 (466)
+++ .+|+++..
T Consensus 200 ~~~--~~~~~~~~ 210 (360)
T d1bjna_ 200 PAG--LTIVIVRE 210 (360)
T ss_dssp STT--CEEEEEEG
T ss_pred cCC--CceeEeee
Confidence 887 34444443
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=3.9e-07 Score=93.24 Aligned_cols=220 Identities=12% Similarity=0.102 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc----------------------------cCCCEEEEcCCCc
Q 012321 210 PTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV----------------------------PAGGHIVTTTDCY 259 (466)
Q Consensus 210 p~~~~Lee~lA~l~g--~e~~v~~~SG~aAi~~al~all----------------------------~pGD~VLv~~~~y 259 (466)
...+.|.++|.++.+ .+.+++++||++|+..++.... .+..+||.....|
T Consensus 100 ~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~sy 179 (461)
T d1ohwa_ 100 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF 179 (461)
T ss_dssp THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred HHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCc
Confidence 445667666666544 3678899999999998876432 2234788888888
Q ss_pred cch-HHHHHh---------hcccCCcEEEEeCC-----------------CCHHHHHHhcc-----CCCceEEEEeCCCC
Q 012321 260 RKT-RIFIET---------VLPKMGITATVIDP-----------------ADMEGLEAALN-----NNNVSLFFTESPTN 307 (466)
Q Consensus 260 ~~t-~~~~~~---------~l~~~gi~v~~vd~-----------------~D~e~Le~ai~-----~~~tklV~lesPsN 307 (466)
++. ...+.. .....+..+..... .+.+++++.+. ..++.+|++|....
T Consensus 180 HG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g 259 (461)
T d1ohwa_ 180 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS 259 (461)
T ss_dssp CCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBC
T ss_pred CCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccc
Confidence 773 222110 01111111111110 01344444442 23588999998887
Q ss_pred CCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CCc--cchhcc--CCcEEEeccccccccccCceEEEEEeChH
Q 012321 308 PFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLN--QKALSL--GADLVLHSATKFIGGHNDVLAGSISGSGK 375 (466)
Q Consensus 308 PtG~v~d----l~~I~ela~~~gillIvD~t~a~----~~~--~~pl~~--gaDivv~S~sK~lgG~gdv~gG~vvg~~e 375 (466)
..|.+.+ +++|.++|++||++||+||++.. +.+ ...... ..|+++ ++|.+++ |++.....
T Consensus 260 ~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~~~~~ 331 (461)
T d1ohwa_ 260 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFFHKEE 331 (461)
T ss_dssp TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEEECGG
T ss_pred cccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------cccccccc
Confidence 6676543 88999999999999999999643 221 222222 267775 6798875 33333332
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCC-cEEEeCCCC
Q 012321 376 LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPK-VKRVHYPGL 438 (466)
Q Consensus 376 li~~l~~~~~~~G~~ls~~~A~l~lrgL~tl~~--R~e~~~~na~~La~~L~----~~p~-V~~V~~PgL 438 (466)
+... ...........+|..+..++..|+.+.. .+++..+..++|.+.|+ ++|. |..|+.-||
T Consensus 332 ~~~~-~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl 400 (461)
T d1ohwa_ 332 FRPN-APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT 400 (461)
T ss_dssp GSCS-STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred cccc-cccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE
Confidence 2110 0000111122356666655555555432 23344444444444443 4553 666654443
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.55 E-value=1.1e-07 Score=92.49 Aligned_cols=146 Identities=10% Similarity=-0.061 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhhhCCC--cEEEeCCHH-H-HHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC----
Q 012321 210 PTTVVVEEKMSALEGAE--STVIMASGM-S-ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---- 281 (466)
Q Consensus 210 p~~~~Lee~lA~l~g~e--~~v~~~SG~-a-Ai~~al~all~pGD~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd---- 281 (466)
...+..++.|+++++.+ ..+++++|+ + ++.++...+..+++.+++....+.+.. +...+...+.......
T Consensus 48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~ 125 (360)
T d1w23a_ 48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEK--ALKEAKLLGETHIAASTKAN 125 (360)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHTTSEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhh--hHHHHHHhhhcceeeccccc
Confidence 35677899999999973 466776666 3 344455556778888888765554433 2233445555544432
Q ss_pred -CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccchhccCCcEEEecccccc
Q 012321 282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359 (466)
Q Consensus 282 -~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~~~-~~~pl~~gaDivv~S~sK~l 359 (466)
..++++++..... ...+++ .|-||.+.|+++|.++||++|+++++|.+.+.+. ..+..++++|+...+.+|++
T Consensus 126 ~~~~~~~~~~~~~~--~~~~~~---~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~ 200 (360)
T d1w23a_ 126 SYQSIPDFSEFQLN--ENDAYL---HITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGP 200 (360)
T ss_dssp TSCSCCCGGGCCCC--TTEEEE---EEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSC
T ss_pred cccchhhhhhcccc--ccccee---EecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeecccccc
Confidence 1233444444433 345555 4557999999999999999999999999977653 34555667777766666655
Q ss_pred ccc
Q 012321 360 GGH 362 (466)
Q Consensus 360 gG~ 362 (466)
+++
T Consensus 201 ~~~ 203 (360)
T d1w23a_ 201 SGV 203 (360)
T ss_dssp TTC
T ss_pred CCc
Confidence 443
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=1.2e-05 Score=82.12 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=131.6
Q ss_pred hHHHHHHHHHhhhCCCcEEE-eCCHHHHH-HHHHHHh---ccCC----CEEEEcCCCccchHHHHHhhcccCCcEEEEeC
Q 012321 211 TTVVVEEKMSALEGAESTVI-MASGMSAS-TVMLLAL---VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (466)
Q Consensus 211 ~~~~Lee~lA~l~g~e~~v~-~~SG~aAi-~~al~al---l~pG----D~VLv~~~~y~~t~~~~~~~l~~~gi~v~~vd 281 (466)
..-+++..|++|.|.+-+=. .-.|..|. .+++++. .+.| ..+++..+.+......... ..+..+..++
T Consensus 107 alfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 183 (471)
T d1wyub1 107 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS---MAGYQVREIP 183 (471)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH---HTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeee---cccceeeccc
Confidence 34566899999999874322 23444333 3332222 1223 2345555556554433322 2234443333
Q ss_pred -----CCCHHHHHHhccCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC--CCccchhccCCcEEEec
Q 012321 282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLHS 354 (466)
Q Consensus 282 -----~~D~e~Le~ai~~~~tklV~lesPsNPtG~v~dl~~I~ela~~~gillIvD~t~a~--~~~~~pl~~gaDivv~S 354 (466)
..|.+.++....++ +..+++++|++..+...+.+++++++|++|..+++|.+... .....|-..|+|+++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~-~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg 262 (471)
T d1wyub1 184 SGPEGEVDLEALKRELGPH-VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLN 262 (471)
T ss_dssp BCTTSSBCHHHHHHHCSTT-EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECC
T ss_pred ccccccccchhhhhhhhcc-ccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccccc
Confidence 24688888888775 89999999997655555799999999999999999876322 23456777889999888
Q ss_pred cccccccc---cCceEEEEEeChHHHHHHHHH-------------------HH---HhCCCchHH--HHHHHHHhhHHHH
Q 012321 355 ATKFIGGH---NDVLAGSISGSGKLVTQIRNL-------------------HH---VLGGALNPN--AAYLIIRGMKTLH 407 (466)
Q Consensus 355 ~sK~lgG~---gdv~gG~vvg~~eli~~l~~~-------------------~~---~~G~~ls~~--~A~l~lrgL~tl~ 407 (466)
.++.||.+ |.--.|++..+++++.++-.. ++ ..+..+... ..|+.+.|-+-|.
T Consensus 263 ~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~ 342 (471)
T d1wyub1 263 LHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLK 342 (471)
T ss_dssp TTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHH
Confidence 88866432 112357888888776554210 00 001112222 2355555666666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcE
Q 012321 408 LRVQQQNSTALRMAKILEAHPKVK 431 (466)
Q Consensus 408 ~R~e~~~~na~~La~~L~~~p~V~ 431 (466)
.--++..+++.++++.|+. ++++
T Consensus 343 elA~~~~~~A~Yla~~L~~-~G~~ 365 (471)
T d1wyub1 343 KAAALAVLNARYLKELLKE-KGYR 365 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCB
T ss_pred HHHHHHHHHHHHHHHHHhh-cCce
Confidence 6667778999999999976 5554
|