Citrus Sinensis ID: 012328

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------

MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEcccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEccccccccccccEEcccccccccccccccEEEEEEEcccEEEEEEEccccccccEEEEccccccccHHHHHHcccccccccccEEEEccccccccccHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccEcccccccccccccccccccccccccccccccEEEcccccccccccHcccccccccccccccccccHHHHHHHHcccccccEEEEccccccEEEEEccccccccccEEEEEccHcEEEccccccccccccEEEcccHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHccccccccccEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccHEEHHHHHHHcccccccEEEEEEcccccEEEEEEcccccccccEEEEEEccccccHHHHHHcccEcccccccEEEEcccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

maisvplhqltysffsnpqgqwkwcakpsysfsnnsQNNIRAIKasvetppfplfqnpkleetpadglepadpdfykigyVRSMRAYgvefkegpdgfgvfaskdiepRRRARLVMQIPLELMLTIRqklpwmffpdivplghpifdiinstdpetdWDLRLACLLLYAFDQDDNFWQLygdflpnadeCTSLLLATEEDlmelqdpnlASTMREQQKRAREFWEknwhsgvplkikrlahdpeRFIWAVSIAQSRCINMQVRIGALvqdanmlipyadmlnhsfqpncffhWRFKDRMLEVMVNAGqhvrrgeeMTVNYMHGQMNDMlmqrygfsspvnpwnviqfsgdariHLDSFLSVfnisglpeeYYHNIIAAArtlptwsdgdvplvpsIERKAVKELQEECRQMLaefpttskqdQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

maisvplhQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEetpadglepadPDFYKIGYVRSMRAYGVefkegpdgfgvfaskdieprrRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREfweknwhsgvplKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMlaefpttskqdqkmldsmkepRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

*****PLHQLTYSFFSNPQGQWKWCAKPSYSF*****************************************DFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATE***********************EFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPTWSDGDVPLVPSI***************************************LEAAIKYRLHRKLFIDKVIKALDIYQDRI**

**********T***F***Q*******************************************************FYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSK****************EAAIKYRLHRKLFIDKVIKALDIYQDRILF

MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLAS********AREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

*****PLHQLTYSFFSNPQGQWKWCAKPSYSFS****NNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		466	2.2.26 [Sep-21-2011]
Q9XI84		482	[Fructose-bisphosphate al	no	no	0.721	0.697	0.251	7e-13
P94026		491	Ribulose-1,5 bisphosphate	N/A	no	0.699	0.663	0.227	6e-12
Q43088		489	Ribulose-1,5 bisphosphate	N/A	no	0.716	0.683	0.237	3e-10
P58467		439	SET domain-containing pro	yes	no	0.360	0.382	0.236	3e-05

>sp\|Q9XI84\|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1	Back alignment and function desciption

 Score = 75.9 bits (185), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 186/413 (45%), Gaps = 77/413 (18%)

Query: 95  PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDP 154
           P+G G+ A +DI    R  +V++IP  L +           P+ V     I  +     P
Sbjct: 74  PEGLGLVARRDI---GRNEVVLEIPKRLWIN----------PETVT-ASKIGPLCGGLKP 119

Query: 155 ETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPN-LASTM 213
              W + +A  L+    ++++ W++Y D LP + + T  +  +EE+L EL+    L++T+
Sbjct: 120 ---W-VSVALFLIREKYEEESSWRVYLDMLPQSTDST--VFWSEEELAELKGTQLLSTTL 173

Query: 214 REQQKRAREFWEKNWHSGVPLK---IKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQD 270
             ++    EF +      +P K     R+  D   FIWA  I +SR  + ++R   LV  
Sbjct: 174 GVKEYVENEFLKLEQEILLPNKDLFSSRITLDD--FIWAFGILKSRAFS-RLRGQNLV-- 228

Query: 271 ANMLIPYADMLNHSFQPNCF-FHWRFK-----DRMLEVMVNAGQHVRRGEEMTVNYMHGQ 324
              LIP AD++NH+       + +  K      R L   + +  +V+ GE++ + Y   +
Sbjct: 229 ---LIPLADLINHNPAIKTEDYAYEIKGAGLFSRDLLFSLKSPVYVKAGEQVYIQYDLNK 285

Query: 325 MNDMLMQRYGF--SSPV-NPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAART 381
            N  L   YGF  S+P  N + +     ++       L +   + + E  Y +I+   +T
Sbjct: 286 SNAELALDYGFVESNPKRNSYTLTIEIPESDPFFGDKLDIAESNKMGETGYFDIV-DGQT 344

Query: 382 LPT---------------------------WSDGDVPLVPSIERKAVKELQEECRQMLAE 414
           LP                            W   ++P+  + E    + +++ C+  L+ 
Sbjct: 345 LPAGMLQYLRLVALGGPDAFLLESIFNNTIWGHLELPVSRTNEELICRVVRDACKSALSG 404

Query: 415 FPTTSKQDQKMLDSMK-EPRRTLEAAIKYRLHRKLFIDKVIKALD-IYQDRIL 465
           F TT ++D+K+LD  K EPR  LE A+K R+  K    +V++ +D I++DR L
Sbjct: 405 FDTTIEEDEKLLDKGKLEPR--LEMALKIRIGEK----RVLQQIDQIFKDREL 451

Methylates 'Lys-14' of the large subunit of RuBisCO.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7

>sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1	Back alignment and function description

>sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1	Back alignment and function description

>sp\|P58467\|SETD4_MOUSE SET domain-containing protein 4 OS=Mus musculus GN=Setd4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		466
359473101		482	PREDICTED: uncharacterized protein LOC10	0.993	0.960	0.785	0.0
255574450		483	conserved hypothetical protein [Ricinus	0.993	0.958	0.772	0.0
42566980		483	plastid transcriptionally active 14 prot	0.993	0.958	0.718	0.0
62320136		483	hypothetical protein [Arabidopsis thalia	0.993	0.958	0.718	0.0
449454790		482	PREDICTED: ribulose-1,5 bisphosphate car	0.995	0.962	0.743	0.0
110740216		483	hypothetical protein [Arabidopsis thalia	0.993	0.958	0.716	0.0
356530082		482	PREDICTED: ribulose-1,5 bisphosphate car	0.997	0.964	0.739	0.0
297804126		483	PTAC14 [Arabidopsis lyrata subsp. lyrata	0.993	0.958	0.724	0.0
356556146		483	PREDICTED: ribulose-1,5 bisphosphate car	1.0	0.964	0.743	0.0
226499862		494	uncharacterized protein LOC100279779 [Ze	0.896	0.846	0.652	1e-171

>gi\|359473101\|ref\|XP_002275523.2\| PREDICTED: uncharacterized protein LOC100264713 [Vitis vinifera] gi\|297738036\|emb\|CBI27237.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/485 (78%), Positives = 425/485 (87%), Gaps = 22/485 (4%)

Query: 1   MAISVPLHQLTYSFFSNPQGQWKWC-----AKPSYSFSNNSQNNIRAIKASVETPPFPLF 55
           MA S  LH  T+ F S+ QG   +C     ++P+YS+   S NNIR IKA+VE PPFPLF
Sbjct: 1   MASSPLLHHPTHCFISSNQG---FCNGLSSSRPNYSWMRGSGNNIRPIKAAVEMPPFPLF 57

Query: 56  QNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLV 115
           + P++E      LEPADPDFYKIGYVRS+RAYGVEFKEGPDGFGV+ASKD+EP RRAR++
Sbjct: 58  EPPQIESDTPSQLEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRARMI 117

Query: 116 MQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDN 175
           M+IPLELMLTIR+KLPWMFFPDIVP+GHPIFDIINST+PETDWDLRLACLLL+AFDQ+DN
Sbjct: 118 MEIPLELMLTIRKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLFAFDQEDN 177

Query: 176 FWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLK 235
           FWQLYGDFLP+  ECTSLLLA EEDL+ELQDP LASTMR+QQ+RA EFWEKNWHSGVPLK
Sbjct: 178 FWQLYGDFLPSEGECTSLLLAKEEDLLELQDPKLASTMRDQQRRASEFWEKNWHSGVPLK 237

Query: 236 IKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRF 295
           IKRLA DP RFIWAVSIAQSRCINMQ+RIGALVQDANMLIPYADMLNHSFQPNCFFHWRF
Sbjct: 238 IKRLARDPNRFIWAVSIAQSRCINMQMRIGALVQDANMLIPYADMLNHSFQPNCFFHWRF 297

Query: 296 KDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL 355
           KDRMLEVM+NAGQ +++GEEMTVNYM G  NDMLMQRYGFSSPVNPW+VIQFSG+A+IHL
Sbjct: 298 KDRMLEVMINAGQRIKKGEEMTVNYMSGLKNDMLMQRYGFSSPVNPWDVIQFSGNAQIHL 357

Query: 356 DSFLSVFNISGLPEEYYHN--------------IIAAARTLPTWSDGDVPLVPSIERKAV 401
           DSFLSVFNISGLPEEYYHN              +IAAARTLPTWSDGDVP +PS+ERKAV
Sbjct: 358 DSFLSVFNISGLPEEYYHNSRLSNNGDSFVDGAVIAAARTLPTWSDGDVPPMPSMERKAV 417

Query: 402 KELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQ 461
           K+LQEEC+QML EFPTTS+QDQK+LDSM E RRTLEAAIKYRLHRKL I+KVI+ALDIYQ
Sbjct: 418 KQLQEECQQMLLEFPTTSEQDQKILDSMTEERRTLEAAIKYRLHRKLLIEKVIQALDIYQ 477

Query: 462 DRILF 466
           +RILF
Sbjct: 478 ERILF 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255574450\|ref\|XP_002528137.1\| conserved hypothetical protein [Ricinus communis] gi\|223532435\|gb\|EEF34228.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|42566980\|ref\|NP_193746.3\| plastid transcriptionally active 14 protein [Arabidopsis thaliana] gi\|28393566\|gb\|AAO42203.1\| unknown protein [Arabidopsis thaliana] gi\|28973141\|gb\|AAO63895.1\| unknown protein [Arabidopsis thaliana] gi\|110740232\|dbj\|BAF02014.1\| hypothetical protein [Arabidopsis thaliana] gi\|332658878\|gb\|AEE84278.1\| plastid transcriptionally active 14 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|62320136\|dbj\|BAD94330.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|449454790|ref|XP_004145137.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449471403|ref|XP_004153299.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449474044|ref|XP_004154058.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449503343|ref|XP_004161955.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus]

Back alignment and taxonomy information

>gi\|110740216\|dbj\|BAF02006.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356530082\|ref\|XP_003533613.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|297804126\|ref\|XP_002869947.1\| PTAC14 [Arabidopsis lyrata subsp. lyrata] gi\|297315783\|gb\|EFH46206.1\| PTAC14 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356556146\|ref\|XP_003546388.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|226499862\|ref\|NP_001146209.1\| uncharacterized protein LOC100279779 [Zea mays] gi\|219886187\|gb\|ACL53468.1\| unknown [Zea mays] gi\|219888379\|gb\|ACL54564.1\| unknown [Zea mays] gi\|413948639\|gb\|AFW81288.1\| hypothetical protein ZEAMMB73_810642 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		466
TAIR\|locus:2119822		483	PTAC14 "plastid transcriptiona	1.0	0.964	0.720	1.1e-192
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.525	0.508	0.257	6.7e-13
TAIR\|locus:2024066		476	AT1G24610 "AT1G24610" [Arabido	0.463	0.453	0.252	6.2e-09
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.444	0.347	0.279	9.5e-06
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.444	0.347	0.275	2e-05
ASPGD\|ASPL0000031671		707	AN5630 [Emericella nidulans (t	0.343	0.226	0.280	2.1e-05
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.444	0.348	0.275	3.2e-05
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.444	0.347	0.275	3.3e-05
MGI\|MGI:1289184		594	Setd3 "SET domain containing 3	0.373	0.292	0.289	3.3e-05
UNIPROTKB\|G3V6U9		596	Setd3 "Protein Setd3" [Rattus	0.373	0.291	0.284	5.6e-05

TAIR\|locus:2119822 PTAC14 "plastid transcriptionally active 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
 Identities = 348/483 (72%), Positives = 410/483 (84%)

Query:     1 MAISVPLHQLTYSFFSNPQGQWKWCA---KPSYSFSNNSQNNIRAIK-ASVETPPFPLFQ 56
             MA SV L  LT +F S PQG         +P  +   + QN +R IK AS+ET PFPLFQ
Sbjct:     1 MASSVSLQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIETQPFPLFQ 60

Query:    57 NPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVM 116
             +P  EE+ +  LE ADPDFYKIGYVRS+RAYGVEFKEGPDGFGV+ASKDIEPRRRAR++M
Sbjct:    61 SPASEESSSSELETADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDIEPRRRARVIM 120

Query:   117 QIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNF 176
             +IPLELM+TIRQK PWMFFPDIVP+GHPIFDIINSTDPE DWD+RLACLLL++FD+DD+F
Sbjct:   121 EIPLELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPEIDWDIRLACLLLFSFDRDDHF 180

Query:   177 WQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKI 236
             W+LYGDFLP ADEC+SLLLATEEDL ELQDP+L ST+R+QQKR  +FWEKNWHSGVPLKI
Sbjct:   181 WRLYGDFLPAADECSSLLLATEEDLAELQDPDLVSTIRQQQKRILDFWEKNWHSGVPLKI 240

Query:   237 KRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFK 296
             KRLA DPERFIWAVS+AQ+RCI+MQ R+GALVQ+ NM+IPYADMLNHSF+PNCF HWR K
Sbjct:   241 KRLAEDPERFIWAVSMAQTRCISMQTRVGALVQELNMMIPYADMLNHSFEPNCFLHWRPK 300

Query:   297 DRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLD 356
             DRMLEVM NAGQ +++GEEMT+NYM GQ N+MLM+RYGFS+PVNPW+ I+FSGD+RIHL+
Sbjct:   301 DRMLEVMSNAGQDIKKGEEMTINYMPGQKNNMLMERYGFSTPVNPWDAIKFSGDSRIHLN 360

Query:   357 SFLSVFNISGLPEEYYHN-------------IIAAARTLPTWSDGDVPLVPSIERKAVKE 403
             SFLSVFNI GLPEEYYH+             +IAAARTLPTWSD D+P +PS ERKAVKE
Sbjct:   361 SFLSVFNIYGLPEEYYHDSELSRGDTFVDGAVIAAARTLPTWSDIDLPPIPSAERKAVKE 420

Query:   404 LQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDR 463
             LQ+ECR+MLAE+PTT++QDQK+LDSM E R T   A+KYR+HRK+FI K+IKALDIYQ+R
Sbjct:   421 LQDECRKMLAEYPTTAEQDQKLLDSMSEARTTFATAVKYRMHRKMFIGKIIKALDIYQER 480

Query:   464 ILF 466
             +L+
Sbjct:   481 LLY 483

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024066 AT1G24610 "AT1G24610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000031671 AN5630 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

MGI\|MGI:1289184 Setd3 "SET domain containing 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6U9 Setd3 "Protein Setd3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		466
pfam00856		113	pfam00856, SET, SET domain	6e-11
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	1e-07
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	3e-05

>gnl\|CDD\|216155 pfam00856, SET, SET domain	Back alignment and domain information

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 270 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320
           DA  L   A  +NHS +PNC   + F +    ++V A + ++ GEE+T++Y
Sbjct: 62  DATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		466
KOG1337		472	consensus N-methyltransferase [General function pr	99.97
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.94
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.67
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.22
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.37
KOG1085		392	consensus Predicted methyltransferase (contains a	96.21
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	95.58
KOG2589		453	consensus Histone tail methylase [Chromatin struct	95.07
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	94.7
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	94.35
COG2940		480	Proteins containing SET domain [General function p	89.25
KOG1083		1306	consensus Putative transcription factor ASH1/LIN-5	88.41
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	87.1

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=99.97  E-value=2.6e-30  Score=272.54  Aligned_cols=366  Identities=22%  Similarity=0.251  Sum_probs=251.1

Q ss_pred             CcccccHhh-hcC--CCCeeEeeC-CCccEEEEccCCCcccCCceEEEcccccccccccccCCCCCCCCCCCCchhhhhh
Q 012328           74 DFYKIGYVR-SMR--AYGVEFKEG-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDII  149 (466)
Q Consensus        74 ~f~~i~Wl~-~~G--~~~v~i~~~-~~GrGl~A~~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~~g~~~~~~~  149 (466)
                      .+.  .|+. ..+  .++++.... ..|.|+++...+..   |..+...|....++.......       .+..+.....
T Consensus        33 g~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  100 (472)
T KOG1337|consen   33 GLV--RWAASESIASSENIKSLKFWLTGNGLSSSKSSLP---GNDIDEWPLLVSIRLIKGEKL-------LLVPPLLLLI  100 (472)
T ss_pred             cce--eeeecccCCCccccccceeccccCCcchhhhccc---cccccccchhhhhhhhhhhhh-------ccCCchhhhc
Confidence            455  7777 333  344444333 34777777777654   667777777666665432210       1111111122


Q ss_pred             hcCCCCCchh-HHHHHHHHHHh-cCCCChhHHHhhcCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHh
Q 012328          150 NSTDPETDWD-LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKN  227 (466)
Q Consensus       150 ~~~~~~~~~~-~~Lal~Ll~E~-~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~  227 (466)
                      +...+..++. ..|+++++++. .+..|.|.+|+..||..+  .+|++|...++..|++++....+..++..+...+.+.
T Consensus       101 ~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~  178 (472)
T KOG1337|consen  101 AKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAEL  178 (472)
T ss_pred             cccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHH
Confidence            2222222222 67899999998 566699999999999997  5899999999999999999988887776666643322


Q ss_pred             hc--CCCCcccc---ccCCCHHHHHHHHHHhhhccceeccccc---cccCCceeeeeccccCCCCCCCCcceEEeecCCe
Q 012328          228 WH--SGVPLKIK---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRM  299 (466)
Q Consensus       228 ~~--~~~p~~~~---~~~~t~e~f~WA~~~V~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~  299 (466)
                      ..  ...+..+.   ...++++.|.||+++|.||+|+.+....   .......+|+|++||+||+++. +...++..++.
T Consensus       179 ~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~  257 (472)
T KOG1337|consen  179 LEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA  257 (472)
T ss_pred             HHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc
Confidence            21  01111111   1227899999999999999999987631   1235789999999999999987 45566666665


Q ss_pred             EEEEEEecccCCCCceEEecCCCCCChHHHHHhCCccCCCCCCCeEEeccCccc---ccchhhhhhhhCCCChhH-----
Q 012328          300 LEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARI---HLDSFLSVFNISGLPEEY-----  371 (466)
Q Consensus       300 ~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~---~~d~~l~~l~~~gl~~~~-----  371 (466)
                        +.+++.++|++|||||||||++ +|++||.+||||.++||+|.|.+...+..   ........+...+++...     
T Consensus       258 --~~l~~~~~v~~geevfi~YG~~-~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T KOG1337|consen  258 --VELVAERDVSAGEEVFINYGPK-SNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSIL  334 (472)
T ss_pred             --EEEEEeeeecCCCeEEEecCCC-chHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEe
Confidence              7778999999999999999998 79999999999999999999999764431   001111112222222210     


Q ss_pred             -----HHHHHHHH---Hhc------------------cCCCCCCCCCCchhHHHHHHHHHHH-HHHHHHcCCCChHHHHH
Q 012328          372 -----YHNIIAAA---RTL------------------PTWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSKQDQK  424 (466)
Q Consensus       372 -----~~~llaal---Rv~------------------~~~~~~~~p~s~~~E~~~~~~L~~~-~~~~L~~~~TtieeD~~  424 (466)
                           ....+.+.   +..                  ..+.....+.+.++|...+..+... |...+..+.+++++|+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~  414 (472)
T KOG1337|consen  335 LTGEPVSEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDES  414 (472)
T ss_pred             ecCCchhhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhh
Confidence                 00111111   111                  0111223456678999999999999 88889999999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012328          425 MLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALD  458 (466)
Q Consensus       425 ~L~~~~~~~~~~r~A~~~R~~eK~iL~~~l~~L~  458 (466)
                      .+... ..+....++.++|..+|+||.+++..+.
T Consensus       415 vl~~~-~l~~~~~~~~k~~~~~~~iL~~~~~~~~  447 (472)
T KOG1337|consen  415 VLKDN-ILSKLLELLEKLRTLEKRILEKSLKLLR  447 (472)
T ss_pred             hhccc-ccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            88874 5678888999999999999999988776

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>COG2940 Proteins containing SET domain [General function prediction only]	Back alignment and domain information

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		466
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		4e-11
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		4e-11

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

Iteration: 1

Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 103/426 (24%), Positives = 168/426 (39%), Gaps = 92/426 (21%) Query: 96 DGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPE 155 +G G+ A KDI R +++Q+P L + PD V I + + P Sbjct: 36 EGLGLVALKDIS---RNDVILQVPKRLWIN----------PDAVA-ASEIGRVCSELKP- 80 Query: 156 TDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMRE 215 W L + L+ ++D+ W+ Y LP E S + +EE+L ELQ L T Sbjct: 81 --W-LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVS 135 Query: 216 QQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDAN 272 ++ + K + L KRL DP + F WA I +SR + ++R LV Sbjct: 136 VKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV---- 189 Query: 273 MLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVN 319 ++P AD++NHS +D EV AG V+ GE++ + Sbjct: 190 -VVPMADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 242 Query: 320 YMHGQMNDMLMQRYGFSSPVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYYHNII 376 Y + N L YGF P + + ++ D L V +G + Y +I Sbjct: 243 YDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIF 302 Query: 377 AAARTLP----------TWSDGDVPLVPSIERKAV-----------------KELQEECR 409 RTLP D L+ S+ R + K ++E C+ Sbjct: 303 -YNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACK 361 Query: 410 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDI 459 LA + TT +QD+++ + + R L A+ R K+ + ++ + L+ Sbjct: 362 SALAGYHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEY 419 Query: 460 YQDRIL 465 YQ+R L Sbjct: 420 YQERRL 425

PyMOL of 1mlv

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		466
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-49
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	1e-46
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	3e-37
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	8e-06
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	2e-04
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	3e-04
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	4e-04

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

 Score =  173 bits (439), Expect = 2e-49
 Identities = 84/426 (19%), Positives = 152/426 (35%), Gaps = 78/426 (18%)

Query: 89  VEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDI 148
           V+     +G G+ A KDI       +++Q+P  L +                        
Sbjct: 25  VKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAASEIGRVC---------- 71

Query: 149 INSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPN 208
                 E    L +   L+    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   
Sbjct: 72  -----SELKPWLSVILFLIRERSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQ 124

Query: 209 LASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIG 265
           L  T    ++  +    K     + L  KRL  DP   + F WA  I +SR  +      
Sbjct: 125 LLKTTVSVKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLR--- 180

Query: 266 ALVQDANMLIPYADMLNHSFQPNCFFH-------WRFKDRMLEVMVNAGQHVRRGEEMTV 318
               +  +++P AD++NHS       H                  + +   V+ GE++ +
Sbjct: 181 ---NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 237

Query: 319 NYMHGQMNDMLMQRYGFSSPVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYYHNI 375
            Y   + N  L   YGF  P    +    +    ++    D  L V   +G  +  Y +I
Sbjct: 238 QYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDI 297

Query: 376 --------------------------IAAARTLPTWSDGDVPLVPSIERKAVKELQEECR 409
                                     + +      W   ++ +    E    K ++E C+
Sbjct: 298 FYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACK 357

Query: 410 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDI 459
             LA + TT +QD+++ +   + R  +  A+  R   K+ + ++          +  L+ 
Sbjct: 358 SALAGYHTTIEQDRELKEGNLDSRLAI--AVGIREGEKMVLQQIDGIFEQKELELDQLEY 415

Query: 460 YQDRIL 465
           YQ+R L
Sbjct: 416 YQERRL 421

PyMOL of 2h21

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		466
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.39
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.29
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.24
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	98.25
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.98
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	97.61
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	97.52
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	97.46
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.43
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	97.43
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	97.38
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.26
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	97.0
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	96.81
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	96.8
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	96.64
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	96.57
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	96.57
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	96.44
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	92.35
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	92.24
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	91.63
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	91.63
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	89.07
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	85.59
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	84.55
3ray_A		237	PR domain-containing protein 11; structural genomi	82.3
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	81.39
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	81.0
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	80.38

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

Probab=100.00  E-value=7.8e-61  Score=500.12  Aligned_cols=361  Identities=22%  Similarity=0.347  Sum_probs=284.4

Q ss_pred             CCcccccHhhhcC--CCCeeEee--CCCccEEEEccCCCcccCCceEEEcccccccccccccCCCCCCCCCCCCchhhhh
Q 012328           73 PDFYKIGYVRSMR--AYGVEFKE--GPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDI  148 (466)
Q Consensus        73 ~~f~~i~Wl~~~G--~~~v~i~~--~~~GrGl~A~~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~~g~~~~~~  148 (466)
                      .+|.  +|++++|  .+++.+..  .+.||||+|++||++   ||+|++||.+++||..++..+       .+|+    .
T Consensus         7 ~~f~--~W~~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~---ge~ll~IP~~~~ls~~~~~~~-------~~~~----~   70 (440)
T 2h21_A            7 QTFW--KWLQEEGVITAKTPVKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAAS-------EIGR----V   70 (440)
T ss_dssp             HHHH--HHHHHTTSSCTTCSEEEEEETTEEEEEESSCBCT---TEEEEEEEGGGCCSHHHHTTS-------TTHH----H
T ss_pred             HHHH--HHHHHCCCCcCCceeeeccCCCCCEEEEcccCCC---CCEEEEeChhHhccHHHhcch-------hHHH----H
Confidence            4678  9999999  44555544  457999999999998   899999999999999987532       2333    3


Q ss_pred             hhcCCCCCchhHHHHHHHHHHhcCCCChhHHHhhcCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHhh
Q 012328          149 INSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNW  228 (466)
Q Consensus       149 ~~~~~~~~~~~~~Lal~Ll~E~~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~~  228 (466)
                      +.+   ..+| ..||++|++|+.|++|+|+||+++||+.+  ++|++|+++|++.|+|+++...+.++++.+++.|+.+.
T Consensus        71 ~~~---~~~~-~~Lal~Ll~E~~g~~S~w~pYl~~LP~~~--~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~~~  144 (440)
T 2h21_A           71 CSE---LKPW-LSVILFLIRERSREDSVWKHYFGILPQET--DSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLE  144 (440)
T ss_dssp             HTT---SCHH-HHHHHHHHHHHHCTTCTTHHHHTTSCSCC--SCTTTCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc---cCcH-HHHHHHHHHHhcCCCCcHHHHHHhcCCCC--CCcccCCHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            322   3456 67999999999999999999999999985  68999999999999999999999888888998898765


Q ss_pred             cC---CCCccccccCCCHHHHHHHHHHhhhccceeccccccccCCceeeeeccccCCCCCCCCc-ceEEeecC------C
Q 012328          229 HS---GVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNC-FFHWRFKD------R  298 (466)
Q Consensus       229 ~~---~~p~~~~~~~~t~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~-~~~~~~~~------~  298 (466)
                      ..   ..+..++. ..+++.|.||+++|+||+|....      .+..+|||++||+||+++++. ++.|..++      +
T Consensus       145 ~~~~~~~~~~f~~-~~t~~~f~wA~~~v~SRaf~~~~------~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~  217 (440)
T 2h21_A          145 QEIILPNKRLFPD-PVTLDDFFWAFGILRSRAFSRLR------NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSW  217 (440)
T ss_dssp             HHTTSTTTTTCCS-CCCHHHHHHHHHHHHHHCBCCC---------CCBCCSSTTSCEECTTCCCCCCEEEC---------
T ss_pred             HHHHHhChhhCCC-CCCHHHHHHHHHHhcccceeccC------CCceEEeechHhhcCCCCcccccceeeecCcccccCC
Confidence            31   12222222 35999999999999999997643      357899999999999998753 45665432      1


Q ss_pred             eEEEEEEecccCCCCceEEecCCCCCChHHHHHhCCccCCCCCCCeEEeccCcccccchh----hhhhhhCCCChh----
Q 012328          299 MLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSF----LSVFNISGLPEE----  370 (466)
Q Consensus       299 ~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~~~d~~----l~~l~~~gl~~~----  370 (466)
                      ...+++++.++|++||||||+||++.+|++||++||||+++||+|.+.|.++.. ..|++    ++.++..|+++.    
T Consensus       218 ~~~~~l~a~~~i~~Geei~~sYG~~~~N~~LL~~YGFv~~~n~~d~~~l~l~~~-~~d~~~~~k~~~l~~~gl~~~~~f~  296 (440)
T 2h21_A          218 DYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEIS-ESDPFFDDKLDVAESNGFAQTAYFD  296 (440)
T ss_dssp             -CEEEEEESSCBCTTSBCEECSCTTCCHHHHHHHSSCCCSCGGGCEEEEEEECC-TTSTTHHHHHHHHHTTTCCSEEEEE
T ss_pred             CceEEEEECCCCCCCCEEEEeCCCCCCHHHHHHhCCCCcCCCCCCeEEEEeecC-CccccHHHHHHHHHHcCCCCCceEE
Confidence            224888999999999999999999746999999999999999999999876543 22322    334555565432    


Q ss_pred             ------HHHHHHHHHHhccC-----------CC-----CCCCCCCchhHHHHHHHHHHHHHHHHHcCCCChHHHHHHHhc
Q 012328          371 ------YYHNIIAAARTLPT-----------WS-----DGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDS  428 (466)
Q Consensus       371 ------~~~~llaalRv~~~-----------~~-----~~~~p~s~~~E~~~~~~L~~~~~~~L~~~~TtieeD~~~L~~  428 (466)
                            ...++++++|++..           +.     ....|++.+||.++++.|.+.|+.+|+.|+||+|+|+++ .+
T Consensus       297 i~~~~~~~~~ll~~lR~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~E~~~~~~L~~~~~~~L~~y~TtieeD~~l-~~  375 (440)
T 2h21_A          297 IFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDREL-KE  375 (440)
T ss_dssp             EETTSCCCTTHHHHHHHHHCCGGGGGGGSGGGTTTHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHH-HT
T ss_pred             eecCCCCCHHHHHHHHHHhCChhhHHHHHHHHhhhhhccccCCCChhHHHHHHHHHHHHHHHHHHhCCCcHHHHHHh-hc
Confidence                  22368899998631           11     112367888999999999999999999999999999998 65


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhc
Q 012328          429 MKEPRRTLEAAIKYRLHRKLFIDKVIK----------ALDIYQDRIL  465 (466)
Q Consensus       429 ~~~~~~~~r~A~~~R~~eK~iL~~~l~----------~L~~~~~~~~  465 (466)
                      + ..+.++++|+++|++||+||+++++          .+++||||+|
T Consensus       376 ~-~~~~r~~~A~~~R~~EK~iL~~~~~~~~~~~~~l~~~~~~~~r~l  421 (440)
T 2h21_A          376 G-NLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRL  421 (440)
T ss_dssp             S-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence            3 5789999999999999999999987          5568899986

PyMOL of 2h21

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		466
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	8e-25
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	4e-13
d2f69a2		171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	1e-04
d1mvha_		269	b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S	3e-04
d1ml9a_		284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	0.001
d2g46a1		119	b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth	0.002

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  100 bits (250), Expect = 8e-25
 Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 37/262 (14%)

Query: 89  VEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDI 148
           V+     +G G+ A KDI       +++Q+P  L +                        
Sbjct: 24  VKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAA---------------SE 65

Query: 149 INSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPN 208
           I     E    L +   L+    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   
Sbjct: 66  IGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQ 123

Query: 209 LASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIG 265
           L  T    ++  +    K     + L  KRL  DP   + F WA  I +SR  +      
Sbjct: 124 LLKTTVSVKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNEN 182

Query: 266 ALVQDANMLIPYADMLNHSFQPNCFFHW-------RFKDRMLEVMVNAGQHVRRGEEMTV 318
                  +++P AD++NHS       H                  + +   V+ GE++ +
Sbjct: 183 L------VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 236

Query: 319 NYMHGQMNDMLMQRYGFSSPVN 340
            Y   + N  L   YGF  P  
Sbjct: 237 QYDLNKSNAELALDYGFIEPNE 258

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		466
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.6
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.13
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.67
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	97.04
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	97.02
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	92.07
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	81.23

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.7e-40  Score=319.61  Aligned_cols=244  Identities=23%  Similarity=0.330  Sum_probs=191.3

Q ss_pred             CCCCcccccHhhhcC--CCCeeEee--CCCccEEEEccCCCcccCCceEEEcccccccccccccCCCCCCCCCCCCchhh
Q 012328           71 ADPDFYKIGYVRSMR--AYGVEFKE--GPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIF  146 (466)
Q Consensus        71 ~~~~f~~i~Wl~~~G--~~~v~i~~--~~~GrGl~A~~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~~g~~~~  146 (466)
                      +..+|.  +|++++|  .++|.+..  ...||||+|++||++   ||+|++||..++|+.+++..+       .+++   
T Consensus         4 ~~~~~~--~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~---Ge~il~vP~~~~lt~~~~~~~-------~~~~---   68 (261)
T d2h2ja2           4 AVQTFW--KWLQEEGVITAKTPVKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAAS-------EIGR---   68 (261)
T ss_dssp             HHHHHH--HHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCT---TCEEEEEEGGGCCSHHHHHTS-------GGGT---
T ss_pred             HHHHHH--HHHHHCCCccCCceEeecCCCceeEEEECCcCCC---CCEEEEeChHHhccHHHhhhh-------HHHH---
Confidence            345688  9999999  66777655  245999999999998   999999999999998876532       1122   


Q ss_pred             hhhhcCCCCCchhHHHHHHHHHHhcCCCChhHHHhhcCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Q 012328          147 DIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEK  226 (466)
Q Consensus       147 ~~~~~~~~~~~~~~~Lal~Ll~E~~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~  226 (466)
                       .+..   ..+| ..|+++|++|+.+..|.|++|+++||+..  .+|++|+.+++..|+++.+...+....+.+.+.|.+
T Consensus        69 -~~~~---~~~~-~~l~~~l~~e~~~~~s~~~~y~~~lp~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  141 (261)
T d2h2ja2          69 -VCSE---LKPW-LSVILFLIRERSREDSVWKHYFGILPQET--DSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLK  141 (261)
T ss_dssp             -TTTT---SCHH-HHHHHHHHHHHHCTTCTTHHHHTTSCSCC--SCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHhh---cCcH-HHHHHHHHHHHhCCCCchhhhhhcccccc--CCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence             1211   2334 67899999999999999999999999985  579999999999999999999888888888888877


Q ss_pred             hhcCCCC--ccccccCCCHHHHHHHHHHhhhccceeccccccccCCceeeeeccccCCCCCCCCcceEEeec-------C
Q 012328          227 NWHSGVP--LKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFK-------D  297 (466)
Q Consensus       227 ~~~~~~p--~~~~~~~~t~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~-------~  297 (466)
                      .......  .......++++.|.||+++|.||+|....      ....+|+|++||+||++.+|+...+...       .
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~sr~~~~~~------~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~  215 (261)
T d2h2ja2         142 LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLR------NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFS  215 (261)
T ss_dssp             HHHHTTTTTTTTCCSCCCHHHHHHHHHHHHHHSBCCC---------CCBCCTTGGGCEECSSCCSCCCCCC---------
T ss_pred             HHHHHHhhhhhhccCccCHHHHHHHHHHhhcccccccc------cccccchhhhHHhhcCCCCCcccccccccCcccccC
Confidence            6542111  01122347899999999999999998764      3578999999999999999985443221       1


Q ss_pred             CeEEEEEEecccCCCCceEEecCCCCCChHHHHHhCCccCCC-CCC
Q 012328          298 RMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPV-NPW  342 (466)
Q Consensus       298 ~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~-Np~  342 (466)
                      +...++|+|.|+|++||||||+||+..+|++||.+||||+++ |||
T Consensus       216 ~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         216 WDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             --CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            122478899999999999999999644899999999999875 886

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure