Citrus Sinensis ID: 012333
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | 2.2.26 [Sep-21-2011] | |||||||
| A5UMN6 | 435 | 5-methylthioadenosine/S-a | yes | no | 0.892 | 0.956 | 0.368 | 7e-76 | |
| Q466Q9 | 432 | 5-methylthioadenosine/S-a | yes | no | 0.886 | 0.956 | 0.351 | 2e-66 | |
| Q8PUQ3 | 432 | 5-methylthioadenosine/S-a | yes | no | 0.894 | 0.965 | 0.343 | 3e-66 | |
| B0K2W0 | 431 | 5-methylthioadenosine/S-a | yes | no | 0.869 | 0.939 | 0.337 | 4e-65 | |
| B0K8R8 | 431 | 5-methylthioadenosine/S-a | yes | no | 0.869 | 0.939 | 0.337 | 4e-65 | |
| A5D1G6 | 433 | 5-methylthioadenosine/S-a | yes | no | 0.875 | 0.942 | 0.355 | 5e-65 | |
| Q0AYV2 | 431 | 5-methylthioadenosine/S-a | yes | no | 0.869 | 0.939 | 0.351 | 6e-65 | |
| Q8TRA4 | 432 | 5-methylthioadenosine/S-a | yes | no | 0.881 | 0.951 | 0.340 | 8e-65 | |
| Q2RJW1 | 428 | 5-methylthioadenosine/S-a | no | no | 0.841 | 0.915 | 0.338 | 1e-57 | |
| Q2NHL6 | 425 | 5-methylthioadenosine/S-a | yes | no | 0.871 | 0.955 | 0.316 | 1e-57 |
| >sp|A5UMN6|MTAD_METS3 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=mtaD PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 164/445 (36%), Positives = 263/445 (59%), Gaps = 29/445 (6%)
Query: 17 SSSTMILHNAVIVT-MD-KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
+ +T+++ +A+I+ +D KE + G + + D+I IG D D++ID +
Sbjct: 2 TDNTILIKDALILNPLDFKEIK----GSLLIKNDKIAEIGTDID-----ESNVDKVIDAK 52
Query: 75 SQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIEL 134
+ILLPGFVNTH H S L +G+ADD+ L +WL+D IWP E+N+T E YI LL IEL
Sbjct: 53 GKILLPGFVNTHTHLSMTLFRGLADDLSLDSWLNDNIWPMEANLTSEYCYIGALLGAIEL 112
Query: 135 IHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQK 194
I SG T F++ ++ ++AKAVE G+RA L +D G+ + I+
Sbjct: 113 IKSGTTTFSDM-YFYMEDVAKAVEESGIRAVLSYGMIDFGDD-------EKREHEIKENI 164
Query: 195 ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254
L+ K + ADGRI+++FG A+ LL + R +A E+ TGIH+HV+E E +
Sbjct: 165 ALFEKCNGMADGRIKVFFGPHSPYTASKDLLEDVRWLANEYNTGIHIHVSETQKEINDSL 224
Query: 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GF 313
+ D +LD I FL ++++AH+VW++H EI ++ R VK+SH P S M++ G
Sbjct: 225 EAH--DLRPFEYLDSIGFLGPDVVAAHSVWLSHNEIEIIKRNNVKISHNPCSNMKLASGI 282
Query: 314 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 373
API++++ DICV +GTDGA SNN + +++E+ ASL+ K + +P AL +
Sbjct: 283 APIQDLITNDICVGIGTDGASSNNNLDLIEELRTASLLQKVNLL------NPKALTSNEA 336
Query: 374 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS-LVYCMRTENVV 432
L M TI GA+ + + +IGS+E GKKAD++++D + MVP +S ++Y NV
Sbjct: 337 LAMGTIKGAEVLGLEQEIGSIEVGKKADLILIDTNNANMVPDSSATSSNIIYSANGYNVD 396
Query: 433 SVMCNGQWVMKNKKILLLMRGRLFQ 457
+ +C+G+ +M+N+K+ L +++
Sbjct: 397 TTICDGKILMENRKLTTLDEEEIYK 421
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) (taxid: 420247) EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 3EC: 1 |
| >sp|Q466Q9|MTAD_METBF 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 237/438 (54%), Gaps = 25/438 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD + +NG V + +I IG+ + S+ AD +ID + +++P
Sbjct: 4 IIVKNAYVMTMDPDEGDLKNGTVVIEDGKITEIGE------KTSESADTVIDAKHSVVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G ADD+ L WL IWP E+ +T ED Y +LL +E+I SG T
Sbjct: 58 GLVNTHTHAAMTLFRGYADDLQLADWLEGHIWPAEAKLTAEDVYKGSLLACLEMIRSGTT 117
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
FA+ ++ E AKAVE GLRA L GL W ++ K
Sbjct: 118 SFADM-YFYMDETAKAVEASGLRASLCH-------GLIELWNEEKGATDLKEGKRFVRAW 169
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
AADGRI+ +G ++ L + R+ A GIH+H+ E E +++ +
Sbjct: 170 QGAADGRIKTMYGPHAPNTCSEEFLAKVREEANRDGAGIHIHLLET--EAELLAMKERYG 227
Query: 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEM 319
+V L+ I FL ++L+AH VW++ +I +L + GV VSH S M++ G AP+ +M
Sbjct: 228 KCSVHLLEDIGFLGPDVLAAHCVWLSDGDIEILGKRGVNVSHNVISNMKLASGIAPVYKM 287
Query: 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 379
L + VSLGTDG SNN + + +EM A+L++K T P ALPA VL+M T+
Sbjct: 288 LEKGVNVSLGTDGCASNNNLDLFEEMKTAALLHK------VNTFSPTALPARQVLQMGTV 341
Query: 380 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 439
NGAK++ + G L+ G KAD++VVD + P D + LVY + +V + + NG+
Sbjct: 342 NGAKAL--GTETGMLKVGMKADLIVVDMKKAHLTPCFDVPSHLVYSAKGSDVRTTIVNGK 399
Query: 440 WVMKNKKILLLMRGRLFQ 457
+M + K+L L ++ +
Sbjct: 400 VLMDDYKVLALDEQKVME 417
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q8PUQ3|MTAD_METMA 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=mtaD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 240/442 (54%), Gaps = 25/442 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD ++ + G V + +I IG + + AD +ID + +++P
Sbjct: 4 IIIKNAYVLTMDPDAGDIKKGTVVIEDGKITEIGV------KTKESADTVIDAKGSVVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G ADD+ L WL IWP E+ +T ED Y +LL +E+I SG T
Sbjct: 58 GLVNTHTHAAMTLFRGYADDLQLAEWLEKHIWPAEAQLTAEDVYRGSLLACLEMIRSGTT 117
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
FA+ + E AKAVE GLRA L GL W ++ ++ K
Sbjct: 118 SFADM-YFFMDETAKAVEASGLRASL-------SHGLIELWNEEKGENDLKEGKRFVRAW 169
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
AA GRI+ +G +D L + ++ AR+ G+H+HV E E +++ +
Sbjct: 170 QGAAKGRIKTMYGPHAPNTCSDEFLAKVKEAARQDGAGLHIHVLET--EAELLAMKERYG 227
Query: 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEM 319
+V LD I F ++L+AH VW++ +I +L GV VSH P S M++ G AP+ +M
Sbjct: 228 KCSVHMLDDIGFFGPDVLAAHCVWLSDGDIEVLREKGVNVSHNPISNMKLASGTAPVYKM 287
Query: 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 379
L + VSLGTDG SNN + + +EM A+L++K T +P ALPA VL+MAT+
Sbjct: 288 LERGVNVSLGTDGCASNNNLDLFEEMKTAALLHK------LSTCNPTALPARQVLQMATV 341
Query: 380 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 439
NGAK++ + G L+ G KADM++VD + P D + LVY +V + + +G+
Sbjct: 342 NGAKAL--GTETGMLKTGMKADMIIVDMKKPHLTPCFDVPSHLVYSAGGSDVRTTIVDGK 399
Query: 440 WVMKNKKILLLMRGRLFQLQDK 461
+M++ ++++L ++ + K
Sbjct: 400 ILMQDYRVMVLDEQKVIEEAQK 421
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|B0K2W0|MTAD_THEPX 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Thermoanaerobacter sp. (strain X514) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 233/429 (54%), Gaps = 24/429 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ-SADILQQFSQMADQIIDLQSQILL 79
+++ N +++M +E + N +++ D I IG+ + DI D++ID +I
Sbjct: 3 LLIKNVALLSMKEEQPLMENTNIYIEGDTITYIGEINPDI------KVDRVIDGTKKIAT 56
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H L + ADDV L WL IWP ES ++ ED Y +LL IE+I+SG
Sbjct: 57 PGLINAHTHLGMSLLRNYADDVPLFDWLSKHIWPVESKLSAEDVYWGSLLSMIEMIYSGT 116
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199
T F + + E+AKA E +G+R L + ++ + + ++ ++LY
Sbjct: 117 TTFCDMYF-FMDEVAKATEEVGIRGVLTRGIIEESDA-------EINKEKLRDTRKLYNT 168
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259
H+ ADGRI++ G + L E ++A+E TGIH+HV+E + +V +K
Sbjct: 169 WHNKADGRIKVMVGPHAPYTCSSSYLKEVVELAKELNTGIHIHVSET--KKEVEESFQKH 226
Query: 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKE 318
V L I ++AH V V+ + +L V + P S ++ GFAP+ +
Sbjct: 227 GKSPVKHLKDIGVFDVPTVAAHCVHVSDEDTEILKEMKVSPVYNPTSNAKLASGFAPVDQ 286
Query: 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378
ML I V+LGTDG SNN +++ +E++ A+ INK D A+PA L+MAT
Sbjct: 287 MLKKGINVALGTDGPASNNNLNMFEEIHFAATINKAL------NYDALAVPALEALKMAT 340
Query: 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438
INGAK++LWD +IGS+E GKKAD+V++D P H+ I++L Y + +V +V+ NG
Sbjct: 341 INGAKALLWDKEIGSIEVGKKADIVIIDIDKPHFYPHHNLISALAYTAQASDVDTVIING 400
Query: 439 QWVMKNKKI 447
+ +M+N++I
Sbjct: 401 KIIMENREI 409
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Thermoanaerobacter sp. (strain X514) (taxid: 399726) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|B0K8R8|MTAD_THEP3 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 233/429 (54%), Gaps = 24/429 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ-SADILQQFSQMADQIIDLQSQILL 79
+++ N +++M +E + N +++ D I IG+ + DI D++ID +I
Sbjct: 3 LLIKNVALLSMKEEQPLMENTNIYIEGDTITYIGEINPDI------KVDRVIDGTKKIAT 56
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H L + ADDV L WL IWP ES ++ ED Y +LL IE+I+SG
Sbjct: 57 PGLINAHTHLGMSLLRNYADDVPLFDWLSKHIWPVESKLSAEDVYWGSLLSMIEMIYSGT 116
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199
T F + + E+AKA E +G+R L + ++ + + ++ ++LY
Sbjct: 117 TTFCDMYF-FMDEVAKATEEVGIRGVLTRGIIEESDA-------EINKEKLRDTRKLYNT 168
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259
H+ ADGRI++ G + L E ++A+E TGIH+HV+E + +V +K
Sbjct: 169 WHNKADGRIKVMVGPHAPYTCSSSYLKEVVELAKELNTGIHIHVSET--KKEVEESFQKH 226
Query: 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKE 318
V L I ++AH V V+ + +L V + P S ++ GFAP+ +
Sbjct: 227 GKSPVKHLKDIGVFDVPTVAAHCVHVSDEDTEILKEMKVSPVYNPTSNAKLASGFAPVDQ 286
Query: 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378
ML I V+LGTDG SNN +++ +E++ A+ INK D A+PA L+MAT
Sbjct: 287 MLKKGINVALGTDGPASNNNLNMFEEIHFAATINKAL------NYDALAVPALEALKMAT 340
Query: 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438
INGAK++LWD +IGS+E GKKAD+V++D P H+ I++L Y + +V +V+ NG
Sbjct: 341 INGAKALLWDKEIGSIEVGKKADIVIIDIDKPHFYPHHNLISALAYTAQASDVDTVIING 400
Query: 439 QWVMKNKKI 447
+ +M+N++I
Sbjct: 401 KIIMENREI 409
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|A5D1G6|MTAD_PELTS 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 239/436 (54%), Gaps = 28/436 (6%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
+ +++ A ++TM+ V+R+G + + + I ++G + + F + ID +
Sbjct: 2 ANILIQGATVLTMEGPDGVYRDGEIAIAGNSILSVGPRGSVPEGFRP--GRSIDGTGMVA 59
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PGFVN H H + L + ADD+ LM WL ++IWP E + ED Y T+LC +E+I SG
Sbjct: 60 MPGFVNCHTHAAMTLLRSYADDMPLMKWLSEKIWPVEERLQPEDIYWGTMLCCLEMIKSG 119
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198
T FA+ + +A AVE G+RACL + + G G A + D+ + +E
Sbjct: 120 TTTFADMYFS-MERVAAAVEESGMRACLSRGMIGVGSG-----ARKAIDESLSFVREW-- 171
Query: 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258
+ ADGRI FG L + D+A GIH+HVAE E + + +
Sbjct: 172 --NGGADGRITAMFGPHAPYTCPPEYLKKVVDLAAREGAGIHIHVAETRDEIEQI----R 225
Query: 259 VDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAP 315
+GT V +LD + +L+AH V ++ +I +LS V ++HCP S M++ G AP
Sbjct: 226 AGYGTTPVRYLDAAGVFELPVLAAHCVHLDEGDIEILSAKRVGIAHCPESNMKLASGIAP 285
Query: 316 IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375
+ E+L A V LGTDGA SNN + +++EM ASL++K T DP ALP+ LR
Sbjct: 286 VTELLQAGAAVGLGTDGAASNNNLDMLEEMRSASLLHK------VSTGDPLALPSFEALR 339
Query: 376 MATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRTENVVSV 434
MAT GA + L D+G L+ G KAD+++VD F P + P HD I LVY ++ +V +V
Sbjct: 340 MATAGGALA-LGLKDVGLLKPGMKADLILVD-FRRPHLCPQHDLIAHLVYAAQSADVDTV 397
Query: 435 MCNGQWVMKNKKILLL 450
+ NG+ VM+ +++L L
Sbjct: 398 IINGKVVMEKRQVLNL 413
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q0AYV2|MTAD_SYNWW 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 151/429 (35%), Positives = 233/429 (54%), Gaps = 24/429 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++L N I+ + + G + + IK +G +F D IID ++Q+LLP
Sbjct: 3 ILLDNISIIPVSGSNSFIEKGYLLIEDVFIKELGTGKAPEGEF----DHIIDGENQVLLP 58
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
GF+N H H + L +G ADD+ LM WL ++IWP E+ +T ED Y T+L +E+I SG T
Sbjct: 59 GFINAHTHAAMTLLRGYADDLPLMEWLENKIWPLEAKLTPEDIYWGTMLAIVEMIKSGTT 118
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
F + + E+A+AVEL G+RA L + + G P S + I+ +EL K
Sbjct: 119 TFNDM-YFCMDEVARAVELSGMRAVLARGMVGVG---PES------EQAIEDSRELIGKW 168
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
A GRI G L ++ E + GIH+HVAE E + ++ ++
Sbjct: 169 QGQAGGRISFRLGPHAPYTCPPAYLERVMQLSDELQAGIHIHVAETRVEYEDIL--KQYG 226
Query: 261 HGTVTFLDKIEFLQN-NLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKE 318
V+ L+ + Q +L+AH V +N EIG+L + V V+H P S M++ G AP+
Sbjct: 227 KTPVSHLESLGLFQGRQVLAAHCVHLNEEEIGILHQYQVGVAHNPESNMKLASGIAPVPR 286
Query: 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378
ML + I V+LGTDGA SNN + ++ EM +S ++K T DP LPA L MAT
Sbjct: 287 MLESGIAVALGTDGASSNNNLDMLQEMRSSSFLHK------VNTMDPMVLPAYQALEMAT 340
Query: 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438
NGA S+ N++G LE G +ADM++++ M P +D + ++VY + +V SV+ +G
Sbjct: 341 ANGAISLGMGNELGRLEPGYRADMIIMNLKEAHMTPRYDLLANIVYSAQASDVNSVIIDG 400
Query: 439 QWVMKNKKI 447
+ VM+N++I
Sbjct: 401 KIVMENREI 409
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Syntrophomonas wolfei subsp. wolfei (strain Goettingen) (taxid: 335541) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q8TRA4|MTAD_METAC 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=mtaD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 150/440 (34%), Positives = 239/440 (54%), Gaps = 29/440 (6%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD ++ +NG V + +I IG++ + AD +ID + +++P
Sbjct: 4 IIIKNAYVLTMDPDAGDLKNGTVVIEDGKITEIGENT------KENADTVIDAKGSVVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G NTH H + L +G ADD+ L WL IWP E+ + ED Y +LL +E+I SG T
Sbjct: 58 GLANTHTHAAMTLFRGYADDLQLAEWLEKHIWPAEAQLKAEDVYKGSLLACLEMIKSGTT 117
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
FA+ ++ E AKAVE GLRA L GL W + ++ K
Sbjct: 118 SFADM-YFYMDETAKAVEASGLRASLSH-------GLIELWNEEKGEADLKEGKRFVRAW 169
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
AADGRI+ +G ++ L + ++ A G+H+HV E E ++ K
Sbjct: 170 QGAADGRIKTMYGPHAPNTCSEEFLTKVKEEAHRDGAGLHIHVLETEAE----LNAMKER 225
Query: 261 HG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIK 317
+G +V L+ I F ++L+AH VW++ +I +L + V VSH P S M++ G AP+
Sbjct: 226 YGKCSVHLLEDIGFFGPDVLAAHCVWLSDGDIEILRQREVNVSHNPISNMKLASGIAPVY 285
Query: 318 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377
+ML + V+LGTDG SNN + + +E+ A+L++K T +P ALPA VL MA
Sbjct: 286 KMLEKGVNVTLGTDGCASNNNLDLFEEIKTAALLHK------VSTGNPTALPARQVLEMA 339
Query: 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCN 437
T+NGAK++ + G L+ GKKADM+VVD + P D + LVY + +V + + +
Sbjct: 340 TVNGAKAL--GTETGMLKVGKKADMIVVDMKKPHLTPCFDVPSHLVYSAKGCDVRTTIVD 397
Query: 438 GQWVMKNKKILLLMRGRLFQ 457
G+ +M N ++L++ ++ +
Sbjct: 398 GKVLMDNYRVLVMDEEKVIE 417
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q2RJW1|MTAD_MOOTA 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Moorella thermoacetica (strain ATCC 39073) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 221/417 (52%), Gaps = 25/417 (5%)
Query: 37 VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96
V G + + DR+ +G + + + AD +ID + LPG VN H H + L +
Sbjct: 18 VIGKGVIAINDDRLHYVGPAGGLPAGWQ--ADTVIDAGDMVALPGLVNAHTHAAMTLLRS 75
Query: 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKA 156
ADD+ L WL ++IWP E + ED Y + + +E+I SG T FA+ H+ +A A
Sbjct: 76 YADDLPLKQWLEEKIWPREDRLEREDIYWGSKIALLEMIRSGTTTFADM-YFHMDAVAGA 134
Query: 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ 216
V GLRA L Q + + T++ +++ + + H A +GRI G
Sbjct: 135 VVEAGLRASLCQGLIGLQD---------TSNKRLEAGISMVKEWHGAGEGRITTMLGPHA 185
Query: 217 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQ 274
T L + A G+H+H+AE E + V K +G V ++K+ L
Sbjct: 186 PNTCTPEYLTRVAETAAGLGVGLHIHLAETRGEVEDV----KARYGATPVALVNKLGLLD 241
Query: 275 NNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGA 333
+L+AH V + EI +L+ V V+HCP S +++ G AP+KEML A + V++GTDGA
Sbjct: 242 LPVLAAHCVHLTTEEIAILAEKKVGVAHCPESNLKLASGVAPVKEMLAAGVNVAIGTDGA 301
Query: 334 PSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393
SNN + +V E A+L+ KG T DP +PA L MAT+NGA+++ + +IG+
Sbjct: 302 SSNNNLDMVAETRTAALLAKGI------TGDPTVVPAHQALVMATLNGARALGLEKEIGT 355
Query: 394 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450
LEAGKKAD+++VD ++P +D +LVY R +V +V+ NG+ +M ++ L
Sbjct: 356 LEAGKKADLILVDMRQPHLMPPNDVEANLVYAARGSDVDTVIVNGKILMARGEVKTL 412
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Moorella thermoacetica (strain ATCC 39073) (taxid: 264732) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q2NHL6|MTAD_METST 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 230/436 (52%), Gaps = 30/436 (6%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S +T IL + DK + + +V + I+ I + A ++ID ++
Sbjct: 2 SETTSILIKDTTILSDK----IKKASILIVDNTIEEISNDLSVTD-----ASKVIDGTNK 52
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
I +PG VNTH H + L +G+ DD +L TWL+D IWP E+ + E+ Y + L E+I
Sbjct: 53 ITMPGLVNTHSHVAMTLLRGVGDDEELQTWLNDYIWPKEAKLDEKLVYAGSKLAMAEMIK 112
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL 196
+G T F + ++ E AKAVE G+R L G G+ + I++ K L
Sbjct: 113 TGTTTFNDMYF-YMEETAKAVEESGIRGVL-------GYGMIDLFDDEKRKQEIKATKNL 164
Query: 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
H+ A+GR+++ + LL E++ +A + +H+HV+E E V D
Sbjct: 165 IKNSHNTANGRVQVAVAPHAPYTCSKELLSESKKLANKHNLKLHIHVSETQQE---VNDL 221
Query: 257 RKVDHGT-VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFA 314
K + T +LD I+ L N ++AH VW E+ LL V +SH P+S M++ G A
Sbjct: 222 EKQRNQTPFEYLDSIDLLDENTIAAHGVWTTDNEMKLLKEKQVSISHNPSSNMKLASGIA 281
Query: 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374
P+ + + DI V++GTDG SNN + + EM L +L+ K T + LPA+
Sbjct: 282 PVSKYIKNDINVAIGTDGVSSNNNLDMFSEMKLTALLQKV------NTMNAKTLPAQATF 335
Query: 375 RMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSV 434
MAT NGA+++ + GS++ GK AD+V+V+ M+PV + +++++Y +V +V
Sbjct: 336 NMATENGARALGI--NTGSIKEGKLADIVLVNMNVPHMIPVRNPLSNIIYSALGSDVDTV 393
Query: 435 MCNGQWVMKNKKILLL 450
+C+GQ ++++KK+L +
Sbjct: 394 ICDGQLLLEDKKLLTI 409
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| 255547626 | 471 | Atrazine chlorohydrolase, putative [Rici | 0.927 | 0.917 | 0.812 | 0.0 | |
| 225425192 | 469 | PREDICTED: 5-methylthioadenosine/S-adeno | 0.954 | 0.948 | 0.788 | 0.0 | |
| 147857762 | 470 | hypothetical protein VITISV_008190 [Viti | 0.954 | 0.946 | 0.786 | 0.0 | |
| 449468824 | 484 | PREDICTED: 5-methylthioadenosine/S-adeno | 0.924 | 0.890 | 0.809 | 0.0 | |
| 296088709 | 493 | unnamed protein product [Vitis vinifera] | 0.954 | 0.902 | 0.748 | 0.0 | |
| 357152672 | 468 | PREDICTED: 5-methylthioadenosine/S-adeno | 0.927 | 0.923 | 0.739 | 0.0 | |
| 226502244 | 468 | LOC100283572 [Zea mays] gi|195635661|gb| | 0.918 | 0.914 | 0.745 | 0.0 | |
| 115488528 | 471 | Os12g0468600 [Oryza sativa Japonica Grou | 0.944 | 0.934 | 0.718 | 0.0 | |
| 168021897 | 561 | predicted protein [Physcomitrella patens | 0.948 | 0.787 | 0.656 | 1e-175 | |
| 302794660 | 473 | hypothetical protein SELMODRAFT_444093 [ | 0.935 | 0.921 | 0.642 | 1e-175 |
| >gi|255547626|ref|XP_002514870.1| Atrazine chlorohydrolase, putative [Ricinus communis] gi|223545921|gb|EEF47424.1| Atrazine chlorohydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/432 (81%), Positives = 392/432 (90%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SS +ILHNA IVTMD ESRVFRNGGVF+ QD+IKAIGQS+DIL ++S +AD II+L Q
Sbjct: 7 SSVLIILHNAAIVTMDAESRVFRNGGVFIEQDKIKAIGQSSDILGEYSTIADHIINLHGQ 66
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
LLPGFVNTHVHTSQQL +GIADDVDLMTWLH RIWPYESNMTE DSYISTLLCGIELIH
Sbjct: 67 FLLPGFVNTHVHTSQQLGRGIADDVDLMTWLHRRIWPYESNMTELDSYISTLLCGIELIH 126
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL 196
SGVTCFAEAGGQHVS MAKA E LGLRACL QS MD GEGLP SWA RTTDDCIQSQKEL
Sbjct: 127 SGVTCFAEAGGQHVSGMAKAAEELGLRACLTQSVMDSGEGLPPSWASRTTDDCIQSQKEL 186
Query: 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
Y K+H+ A+GRIR+WFGIRQIMN+TDRLLLETRD+ARE TGIHMHV+EI YENQVVMDT
Sbjct: 187 YEKYHNTAEGRIRVWFGIRQIMNSTDRLLLETRDIARELNTGIHMHVSEIAYENQVVMDT 246
Query: 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPI 316
RKV+HGTVTFLDKI+FLQ NLL+AHTVWVN+ EIGLLSRAGVKVSHCPASAMRMLGFAPI
Sbjct: 247 RKVEHGTVTFLDKIDFLQKNLLAAHTVWVNNAEIGLLSRAGVKVSHCPASAMRMLGFAPI 306
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
KEML + ICVS+GTDGAPSNNRMS+VDEMYLASL+NKGREVF NGTT+P LPAETVL+M
Sbjct: 307 KEMLDSSICVSVGTDGAPSNNRMSMVDEMYLASLMNKGREVFTNGTTNPTVLPAETVLKM 366
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMC 436
TINGAK+VLWD++IGS+E GKKAD++V++P +W MVPVHD I+ LVYCMRTEN+VS+MC
Sbjct: 367 VTINGAKTVLWDDEIGSIEVGKKADLIVINPSTWSMVPVHDCISGLVYCMRTENIVSIMC 426
Query: 437 NGQWVMKNKKIL 448
NG+W+MK+KKIL
Sbjct: 427 NGKWIMKDKKIL 438
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425192|ref|XP_002265828.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/445 (78%), Positives = 393/445 (88%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SSS +LHNA+IVTMD E+RVF NG + V +DRI A+GQS +I QF+ +A + DL Q
Sbjct: 5 SSSVTLLHNALIVTMDSETRVFYNGAIVVEKDRIIALGQSHNIFNQFAPLAQNVFDLHGQ 64
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
ILLPGF+NTHVHTSQQL +GIADDVDLMTWLH+RIWPYESNMTEEDSYISTLLCGIELIH
Sbjct: 65 ILLPGFINTHVHTSQQLGRGIADDVDLMTWLHERIWPYESNMTEEDSYISTLLCGIELIH 124
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL 196
SGVTCFAEAGGQHVSEMA+AVELLGLRACLVQSTMD G+GLP SWA RTTDDCIQSQKEL
Sbjct: 125 SGVTCFAEAGGQHVSEMARAVELLGLRACLVQSTMDSGQGLPPSWADRTTDDCIQSQKEL 184
Query: 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
Y KHH ADGRIRIW GIRQIMNATDRLLLETRD+A+E KTGIHMHVAEI YENQVV DT
Sbjct: 185 YEKHHDTADGRIRIWLGIRQIMNATDRLLLETRDVAKELKTGIHMHVAEISYENQVVKDT 244
Query: 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPI 316
RKVD+GTV++L+KI+ L NLL+AHTVWVN TEIG LSRAGVKVSHCPASAMRMLGFAPI
Sbjct: 245 RKVDYGTVSYLEKIDLLNGNLLAAHTVWVNDTEIGFLSRAGVKVSHCPASAMRMLGFAPI 304
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
KEML A ICVSLGTDGAPSNNRMSIVD+MYLASLINKGREV+ GTTDP ALPAET+L+M
Sbjct: 305 KEMLDAGICVSLGTDGAPSNNRMSIVDDMYLASLINKGREVYKLGTTDPTALPAETILKM 364
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMC 436
ATINGAK+VLW+N+IGSLE GKKADM++++PFSW M PVHD I+SLVY MR+EN+VSVMC
Sbjct: 365 ATINGAKTVLWENEIGSLEIGKKADMIIINPFSWSMAPVHDCISSLVYSMRSENIVSVMC 424
Query: 437 NGQWVMKNKKILLLMRGRLFQLQDK 461
NGQW+MK+ KIL + G + + K
Sbjct: 425 NGQWIMKDGKILNVNEGEVISMARK 449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147857762|emb|CAN80808.1| hypothetical protein VITISV_008190 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/446 (78%), Positives = 392/446 (87%), Gaps = 1/446 (0%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SSS +LHNA+IVTMD E+RVF NG + V +DRI A+GQS +I QF+ +A + DL Q
Sbjct: 5 SSSVTLLHNALIVTMDSETRVFYNGAIVVEKDRIIALGQSHNIFNQFAPLAQNVFDLHGQ 64
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
ILLPGF+NTHVHTSQQL +GIADDVDLMTWLH+RIWPYESNMTEEDSYISTLLCGIELIH
Sbjct: 65 ILLPGFINTHVHTSQQLGRGIADDVDLMTWLHERIWPYESNMTEEDSYISTLLCGIELIH 124
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL 196
SGVTCFAEAGGQHVSEMA+AVELLGLRACLVQSTMD G+GLP SWA RTTDDCIQSQKEL
Sbjct: 125 SGVTCFAEAGGQHVSEMARAVELLGLRACLVQSTMDSGQGLPPSWADRTTDDCIQSQKEL 184
Query: 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
Y KHH ADGRIRIW GIRQIMNATDRLLLETRD+A+E KTGIHMHVAEI YENQVV DT
Sbjct: 185 YEKHHDTADGRIRIWLGIRQIMNATDRLLLETRDVAKELKTGIHMHVAEISYENQVVKDT 244
Query: 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPI 316
RKVD+GTV +L+KI+ L NLL+AHTVWVN TEIG LSRAGVKVSHCPASAMRMLGFAPI
Sbjct: 245 RKVDYGTVAYLEKIDLLNGNLLAAHTVWVNDTEIGFLSRAGVKVSHCPASAMRMLGFAPI 304
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
KEML A ICVSLGTDGAPSNNRMSIVD+MYLASLINKGREV+ GTTDP ALPAET+L+M
Sbjct: 305 KEMLDAGICVSLGTDGAPSNNRMSIVDDMYLASLINKGREVYKLGTTDPTALPAETILKM 364
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD-RITSLVYCMRTENVVSVM 435
ATINGAK+VLW+N+IGSLE GKKADM++++PFSW M PVHD I+SLVY MR+EN+VSVM
Sbjct: 365 ATINGAKTVLWENEIGSLEIGKKADMIIINPFSWSMAPVHDCSISSLVYSMRSENIVSVM 424
Query: 436 CNGQWVMKNKKILLLMRGRLFQLQDK 461
CNGQW+MK+ KIL + G + + K
Sbjct: 425 CNGQWIMKDGKILNVNEGEIISMARK 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468824|ref|XP_004152121.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like [Cucumis sativus] gi|449484683|ref|XP_004156951.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/431 (80%), Positives = 383/431 (88%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+S +LHNA+I+TMD SRVFRNGG+ + D+IKAIG S++IL QFS A IIDL SQI
Sbjct: 21 NSLTLLHNALIITMDSHSRVFRNGGIVISGDKIKAIGHSSEILHQFSASAHHIIDLHSQI 80
Query: 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
LLPGF+NTHVHTSQQLA+ IADDVDLMTWLH RIWPYESNMTEEDSYISTLLCGIELIHS
Sbjct: 81 LLPGFINTHVHTSQQLARSIADDVDLMTWLHHRIWPYESNMTEEDSYISTLLCGIELIHS 140
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197
GVTCFAEAGGQHVS MAKAVELLGLRACL QS MDCGEGLPA WA TTDDCIQSQKELY
Sbjct: 141 GVTCFAEAGGQHVSGMAKAVELLGLRACLTQSIMDCGEGLPAPWAAVTTDDCIQSQKELY 200
Query: 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257
KHH+ ADGRIRIWFGIRQIMNATDRLL+ETRD A E +TGIHMHVAEI YENQ V++ R
Sbjct: 201 KKHHNTADGRIRIWFGIRQIMNATDRLLIETRDNALELETGIHMHVAEIAYENQKVINER 260
Query: 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIK 317
KVDHGTVT+L+KI+FL NNLLSAHTVWVN EI LSR GVKVSHCPASAMRMLGFAPI+
Sbjct: 261 KVDHGTVTYLEKIQFLGNNLLSAHTVWVNDNEISFLSRNGVKVSHCPASAMRMLGFAPIR 320
Query: 318 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377
EML A ICVS+GTDGAPSNNRMSIVDEMYLASLINKGREV+ANGTT+P+ LPAE VL+M
Sbjct: 321 EMLDAGICVSIGTDGAPSNNRMSIVDEMYLASLINKGREVYANGTTNPSVLPAEVVLQMV 380
Query: 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCN 437
TINGAKSVLWDN+IGSLE GKKADMVV++P SW MVP HD I+ +VY MRTENV+SVMCN
Sbjct: 381 TINGAKSVLWDNEIGSLEVGKKADMVVINPSSWSMVPSHDSISCIVYSMRTENVISVMCN 440
Query: 438 GQWVMKNKKIL 448
GQW+MK+KKI+
Sbjct: 441 GQWIMKDKKII 451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088709|emb|CBI38159.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/469 (74%), Positives = 393/469 (83%), Gaps = 24/469 (5%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SSS +LHNA+IVTMD E+RVF NG + V +DRI A+GQS +I QF+ +A + DL Q
Sbjct: 5 SSSVTLLHNALIVTMDSETRVFYNGAIVVEKDRIIALGQSHNIFNQFAPLAQNVFDLHGQ 64
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
ILLPGF+NTHVHTSQQL +GIADDVDLMTWLH+RIWPYESNMTEEDSYISTLLCGIELIH
Sbjct: 65 ILLPGFINTHVHTSQQLGRGIADDVDLMTWLHERIWPYESNMTEEDSYISTLLCGIELIH 124
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL 196
SGVTCFAEAGGQHVSEMA+AVELLGLRACLVQSTMD G+GLP SWA RTTDDCIQSQKEL
Sbjct: 125 SGVTCFAEAGGQHVSEMARAVELLGLRACLVQSTMDSGQGLPPSWADRTTDDCIQSQKEL 184
Query: 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
Y KHH ADGRIRIW GIRQIMNATDRLLLETRD+A+E KTGIHMHVAEI YENQVV DT
Sbjct: 185 YEKHHDTADGRIRIWLGIRQIMNATDRLLLETRDVAKELKTGIHMHVAEISYENQVVKDT 244
Query: 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE------------------------IGL 292
RKVD+GTV++L+KI+ L NLL+AHTVWVN TE IG
Sbjct: 245 RKVDYGTVSYLEKIDLLNGNLLAAHTVWVNDTEHLLLRLSIKSKLATRESLISESVSIGF 304
Query: 293 LSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN 352
LSRAGVKVSHCPASAMRMLGFAPIKEML A ICVSLGTDGAPSNNRMSIVD+MYLASLIN
Sbjct: 305 LSRAGVKVSHCPASAMRMLGFAPIKEMLDAGICVSLGTDGAPSNNRMSIVDDMYLASLIN 364
Query: 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 412
KGREV+ GTTDP ALPAET+L+MATINGAK+VLW+N+IGSLE GKKADM++++PFSW M
Sbjct: 365 KGREVYKLGTTDPTALPAETILKMATINGAKTVLWENEIGSLEIGKKADMIIINPFSWSM 424
Query: 413 VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 461
PVHD I+SLVY MR+EN+VSVMCNGQW+MK+ KIL + G + + K
Sbjct: 425 APVHDCISSLVYSMRSENIVSVMCNGQWIMKDGKILNVNEGEVISMARK 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357152672|ref|XP_003576198.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like isoform 1 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/433 (73%), Positives = 383/433 (88%), Gaps = 1/433 (0%)
Query: 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS 75
SS+ ++LHNA +VTMD V R+G V V+ DRI A+G SAD+L F + A Q +DL
Sbjct: 4 ASSADVVLHNAFVVTMDSADAVLRDGAVAVMGDRIAAVGPSADVLAAFPRAA-QTLDLAG 62
Query: 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELI 135
+IL+PGFVNTHVHTSQQLA+GIADDVDLMTWLH RIWPYES+MTEEDSY STLLC IELI
Sbjct: 63 RILIPGFVNTHVHTSQQLARGIADDVDLMTWLHGRIWPYESHMTEEDSYASTLLCCIELI 122
Query: 136 HSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKE 195
SGVTCFAEAGGQ+VSEMA+AVELLGLRACL +STMDCG+GLP +W+ +TDDCIQSQK+
Sbjct: 123 RSGVTCFAEAGGQYVSEMARAVELLGLRACLTKSTMDCGDGLPPNWSSCSTDDCIQSQKD 182
Query: 196 LYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255
LYAKHH+ ADGRIRIWFG+RQIMNATDRLLLETRD+A+E TGIHMH+AEIP+ENQ+VM
Sbjct: 183 LYAKHHNTADGRIRIWFGLRQIMNATDRLLLETRDVAQELNTGIHMHIAEIPHENQLVMR 242
Query: 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAP 315
T+ +DHGTVT+L+KI+FL++NLL+AH+VW+N EI S+AGVKVSHCPASAMR+LGFAP
Sbjct: 243 TKGIDHGTVTYLEKIDFLRSNLLAAHSVWLNEPEINHFSKAGVKVSHCPASAMRLLGFAP 302
Query: 316 IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375
I+EML + +CVSLGTDGAPSNNRMSIVDEMYLASLINKGREV+ GTT+P ALP+ETVL+
Sbjct: 303 IREMLDSGVCVSLGTDGAPSNNRMSIVDEMYLASLINKGREVYIGGTTNPTALPSETVLK 362
Query: 376 MATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVM 435
MATINGAK+VLWD++IGSLE GKKAD+VVV+PF W M+P+HD I ++VYCMRTEN+ SVM
Sbjct: 363 MATINGAKAVLWDDEIGSLEVGKKADLVVVNPFKWSMLPLHDTIANIVYCMRTENIESVM 422
Query: 436 CNGQWVMKNKKIL 448
CNG+W+MK++KI+
Sbjct: 423 CNGKWIMKDQKIM 435
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226502244|ref|NP_001149944.1| LOC100283572 [Zea mays] gi|195635661|gb|ACG37299.1| amidohydrolase family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/429 (74%), Positives = 376/429 (87%), Gaps = 1/429 (0%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+ HNAVIVTMD RV ++G V V DRI A+G SAD+L F A Q +DL +I+LP
Sbjct: 10 VFHNAVIVTMDDAFRVLQDGAVAVAGDRIAAVGPSADVLAAFP-CAVQTLDLGGRIVLPE 68
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
VNTHVHTSQQLA+GIADDVDLMTWLH RIWPYES+MTEEDSY STLLCGIELI SGVTC
Sbjct: 69 LVNTHVHTSQQLARGIADDVDLMTWLHGRIWPYESHMTEEDSYASTLLCGIELIRSGVTC 128
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
FAEAGGQ VSEMA+AVELLG RACL +STMDCG+GLP +W+ +TDDCIQSQKELY KHH
Sbjct: 129 FAEAGGQFVSEMARAVELLGFRACLTKSTMDCGDGLPPNWSCCSTDDCIQSQKELYEKHH 188
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261
+ ADGRIRIWFG+RQIMNATDRLLLETRD+A++ TGIHMH+AEIPYENQ+++ T+ +DH
Sbjct: 189 NTADGRIRIWFGLRQIMNATDRLLLETRDIAQKLNTGIHMHIAEIPYENQLILRTKGIDH 248
Query: 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLH 321
GTVT+L+KI+FL++NLL+AH+VW+N EIG S+AGVKVSHCPASAMRMLGFAPI+EML
Sbjct: 249 GTVTYLEKIDFLRSNLLAAHSVWLNVPEIGFFSKAGVKVSHCPASAMRMLGFAPIREMLD 308
Query: 322 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381
+ +CVSLGTDGAPSNNRMSIVDEMYLASLINKGRE + +GTT+P ALPAETVL+MATING
Sbjct: 309 SGVCVSLGTDGAPSNNRMSIVDEMYLASLINKGREAYISGTTNPTALPAETVLKMATING 368
Query: 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
AK+VLWDN+IGSLE GKKAD+VVV+PF+W MVP+HD I ++VYCMRTEN+ SVMCNG+W+
Sbjct: 369 AKAVLWDNEIGSLEVGKKADLVVVNPFTWSMVPLHDSIANIVYCMRTENIESVMCNGRWI 428
Query: 442 MKNKKILLL 450
MK+ KI+ L
Sbjct: 429 MKDHKIMNL 437
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115488528|ref|NP_001066751.1| Os12g0468600 [Oryza sativa Japonica Group] gi|77555621|gb|ABA98417.1| Amidohydrolase family protein, expressed [Oryza sativa Japonica Group] gi|108862664|gb|ABG22018.1| Amidohydrolase family protein, expressed [Oryza sativa Japonica Group] gi|113649258|dbj|BAF29770.1| Os12g0468600 [Oryza sativa Japonica Group] gi|215686380|dbj|BAG87641.1| unnamed protein product [Oryza sativa Japonica Group] gi|215713483|dbj|BAG94620.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617055|gb|EEE53187.1| hypothetical protein OsJ_36050 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/441 (71%), Positives = 374/441 (84%), Gaps = 1/441 (0%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+LH V+V+MD RVF++G V V DRI A+G SAD+L F A +DL +ILLPG
Sbjct: 13 VLHGGVVVSMDGGFRVFQDGAVAVAGDRIAAVGPSADVLSSFPGAA-ATVDLAGRILLPG 71
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
FVNTHVHTSQQLA+GIADDVDLM WLH RIWPYES+MTEEDSY STLLCGIELI SGVTC
Sbjct: 72 FVNTHVHTSQQLARGIADDVDLMAWLHGRIWPYESHMTEEDSYASTLLCGIELIRSGVTC 131
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
FAEAGGQ+VSEMA+AVELLGLRACL +S MDCG+GLP +W+ +TDDCIQSQK+LY KHH
Sbjct: 132 FAEAGGQYVSEMARAVELLGLRACLTKSIMDCGDGLPPNWSSCSTDDCIQSQKDLYEKHH 191
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261
+ ADGRIRIWFG+RQIMNATDRLLLETRD A++ TGIHMH+AEIPYEN++VM T+ +DH
Sbjct: 192 NTADGRIRIWFGLRQIMNATDRLLLETRDAAQKLNTGIHMHIAEIPYENELVMQTKGIDH 251
Query: 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLH 321
GTVT+L+KI+FL++NLL+AH+VW+N EIG +A VKVSHCPASAMRMLGFAPI+EML
Sbjct: 252 GTVTYLEKIDFLRSNLLAAHSVWLNKPEIGHFLKADVKVSHCPASAMRMLGFAPIREMLD 311
Query: 322 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381
+ +CVSLGTDGAPSNNRMSIVDEMYLA LINKGRE + GTT+P ALPAETVL+MATING
Sbjct: 312 SGVCVSLGTDGAPSNNRMSIVDEMYLACLINKGREAYITGTTNPTALPAETVLKMATING 371
Query: 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
AK+VLWD++IGSLE GKKADMVVV+P W MVPVHD I ++VYCMRTEN+ SVMCNG+W+
Sbjct: 372 AKAVLWDDEIGSLEVGKKADMVVVNPLIWSMVPVHDCIANIVYCMRTENIESVMCNGRWI 431
Query: 442 MKNKKILLLMRGRLFQLQDKL 462
M+ KKI+ L + +K+
Sbjct: 432 MREKKIVNLNEEEVIASAEKI 452
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168021897|ref|XP_001763477.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685270|gb|EDQ71666.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 291/443 (65%), Positives = 358/443 (80%), Gaps = 1/443 (0%)
Query: 25 NAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFV 83
N I+TMDKE RVF+N G VV D+I AIG++ +IL+ + AD I+DL S+ +LPG
Sbjct: 103 NGNILTMDKEMRVFQNNGAMVVLGDKIAAIGKTEEILRAYKSEADAIVDLSSKWVLPGMT 162
Query: 84 NTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA 143
NTHVHTSQQLA+GIADDVDL+TWLH RIWPYESNMTEE+SY STLLCGIELIHSGVTCFA
Sbjct: 163 NTHVHTSQQLARGIADDVDLLTWLHGRIWPYESNMTEEESYWSTLLCGIELIHSGVTCFA 222
Query: 144 EAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHA 203
EAGGQHVS MA+AVE LG+RACL +STMDCGEGLP +WA TT+ C+Q+Q+EL+ K + +
Sbjct: 223 EAGGQHVSAMARAVEELGIRACLTRSTMDCGEGLPPTWASETTESCLQTQEELFEKFNGS 282
Query: 204 ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT 263
A+GRIR+WFG+RQI+NATD LLL T+ A + KTGIHMHVAEIP+EN+ V TR+VDHGT
Sbjct: 283 AEGRIRVWFGLRQILNATDSLLLSTKAAADKHKTGIHMHVAEIPFENEWVTKTREVDHGT 342
Query: 264 VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHAD 323
VT L+ I L NLL+AH+VWV+ +E+ ++++ VKVSHCPA+AMRMLGFAPI EM A
Sbjct: 343 VTHLENIGVLGENLLAAHSVWVSSSEVKMMAKRDVKVSHCPAAAMRMLGFAPIVEMQEAG 402
Query: 324 ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK 383
ICVSLGTDGAPSNNRMS+VDEMYLASLINKGR+ + G TDP ALP ET+L+MATINGAK
Sbjct: 403 ICVSLGTDGAPSNNRMSLVDEMYLASLINKGRQAYEKGMTDPTALPVETILQMATINGAK 462
Query: 384 SVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443
+VLW+++IGSLE GKKAD V+++ W MVP+ D I ++V CMRTENV SVMCNG W+MK
Sbjct: 463 AVLWESEIGSLEVGKKADFVILNLDLWTMVPLLDPIANIVNCMRTENVESVMCNGVWIMK 522
Query: 444 NKKILLLMRGRLFQLQDKLLMNF 466
++IL + G + + + N
Sbjct: 523 EREILTVDEGMVCHMAQQASTNL 545
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302794660|ref|XP_002979094.1| hypothetical protein SELMODRAFT_444093 [Selaginella moellendorffii] gi|300153412|gb|EFJ20051.1| hypothetical protein SELMODRAFT_444093 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 280/436 (64%), Positives = 356/436 (81%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+LH A++VTMD + V+ GG+ + DRI A+G+ IL F+ AD I+DL ++++PG
Sbjct: 13 VLHGAIVVTMDGDRNVYACGGLAMRGDRIIAVGEDQAILADFASGADDIVDLSGRLIIPG 72
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
+NTHVHTSQQL +GIADDVDL+TWLH RIWPYES+MT+ DS++STLLCGIELI SGVTC
Sbjct: 73 LINTHVHTSQQLGRGIADDVDLLTWLHKRIWPYESSMTDSDSFLSTLLCGIELIRSGVTC 132
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
FAEAGGQHV MA+AVELLG+RACL +STMD GEGLP+SWA TTD C+ +Q+ELY +
Sbjct: 133 FAEAGGQHVPAMARAVELLGIRACLTRSTMDSGEGLPSSWATETTDSCLTAQEELYKSLN 192
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261
+A GRIR+WFG+RQIMNATD LLL T++ A ++ TGIHMHV+EIPYEN+ V+ TR V++
Sbjct: 193 GSAGGRIRVWFGLRQIMNATDALLLRTKEAADKYNTGIHMHVSEIPYENEYVIKTRGVEN 252
Query: 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLH 321
GTVT LD+I L NLL+AH+VW+N E+ +++++GVKVSHCPASAMRMLGF P++EML
Sbjct: 253 GTVTHLDRIGVLGENLLAAHSVWINEGEVKMMAKSGVKVSHCPASAMRMLGFCPVQEMLE 312
Query: 322 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381
+CVS+GTDGAPSNNRMS+VDEMYLASLINKG+ GTTDP ALPAETVL MATING
Sbjct: 313 QGVCVSIGTDGAPSNNRMSMVDEMYLASLINKGKLAHTRGTTDPTALPAETVLEMATING 372
Query: 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
AKSVLWDN+IGS+E KKAD VV++P +W MVP+HD I+SLVY MR+EN+ SV+C+G W+
Sbjct: 373 AKSVLWDNEIGSIEVHKKADFVVINPQTWSMVPLHDPISSLVYSMRSENIESVICDGVWI 432
Query: 442 MKNKKILLLMRGRLFQ 457
M+++KIL + + +
Sbjct: 433 MRDRKILTIEEATILK 448
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| ASPGD|ASPL0000035211 | 464 | AN3194 [Emericella nidulans (t | 0.909 | 0.913 | 0.340 | 2.2e-66 | |
| TIGR_CMR|CHY_0698 | 444 | CHY_0698 "amidohydrolase famil | 0.875 | 0.918 | 0.334 | 1.1e-57 | |
| POMBASE|SPAC1F8.04c | 463 | SPAC1F8.04c "hydrolase (predic | 0.920 | 0.926 | 0.305 | 1.6e-54 | |
| UNIPROTKB|Q81S14 | 435 | mtaD "5-methylthioadenosine/S- | 0.877 | 0.940 | 0.312 | 9.8e-48 | |
| TIGR_CMR|BA_1865 | 435 | BA_1865 "chlorohydrolase famil | 0.877 | 0.940 | 0.312 | 9.8e-48 | |
| UNIPROTKB|Q48FM5 | 443 | PSPPH_3669 "Hydrolase, Atz/Trz | 0.871 | 0.916 | 0.313 | 3.3e-47 | |
| TIGR_CMR|CBU_0521 | 484 | CBU_0521 "chlorohydrolase fami | 0.836 | 0.805 | 0.300 | 3.4e-45 | |
| DICTYBASE|DDB_G0285467 | 482 | DDB_G0285467 "putative amidohy | 0.832 | 0.804 | 0.296 | 1.3e-43 | |
| TIGR_CMR|CHY_1438 | 433 | CHY_1438 "amidohydrolase famil | 0.729 | 0.785 | 0.304 | 5.7e-36 | |
| TIGR_CMR|SPO_2957 | 444 | SPO_2957 "hydroxydechloroatraz | 0.903 | 0.948 | 0.246 | 2.7e-24 |
| ASPGD|ASPL0000035211 AN3194 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 152/447 (34%), Positives = 256/447 (57%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQ--DRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
M+ +A I+T+D R+ +G ++V + +RI ++G++A +L Q+ ++ DL +I+
Sbjct: 1 MLFTHATILTLDSTRRIITDGAIYVPRGSNRISSLGKTAALLAQYPD--EEKYDLTGRIV 58
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PG V+TH+HT+Q L +G ADD++L++WL +RIW + N T++D Y + L E++ SG
Sbjct: 59 IPGLVSTHMHTAQTLLRGTADDLELVSWLCERIWVLQGNFTKDDGYAAARLSIAEMLKSG 118
Query: 139 VTCFAEA--GGQHVSE-MAKAVELLGLRACLVQSTMDCGE-GLPASWA-----VRTTDDC 189
TCF E+ ++ E + +AV G+R CL + MD G +WA + +
Sbjct: 119 TTCFLESMFADRYGFEGLCQAVAESGIRGCLGKIVMDKGTYAADDAWAMHPGLIEDRETS 178
Query: 190 IQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249
+ +++ K + AD RIR+WFG R +D L E ++RE I MH AE+ +
Sbjct: 179 LLGTVKMWEKWNGKADDRIRVWFGARTPGGVSDELYREMTAISREKNIPITMHCAEVKAD 238
Query: 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309
V H +T+ + L + + H V ++ +I LLS +G V+HCP S +
Sbjct: 239 RAFF---GSVGHTPMTYCSSVGLLSPSTVLVHMVHLDDRDISLLSESGTHVAHCPTSNAK 295
Query: 310 ML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 368
+ G + ++ A + + LGTDGAP NN ++ EM LA++I+KG + DP +
Sbjct: 296 LASGTCRVPDLQTAGVNIGLGTDGAPCNNTCDLLQEMKLAAIIHKG------ASYDPTVV 349
Query: 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRT 428
AE+VL MATINGAK++ D++IGSLE GKKAD V +D M P + ++++VY
Sbjct: 350 SAESVLEMATINGAKALGLDSEIGSLEVGKKADFVAIDTRGVSMQPWFNPVSAVVYTATG 409
Query: 429 ENVVSVMCNGQWVMKNKKILLLMRGRL 455
+V +V+ +G+ V++N ++L + G++
Sbjct: 410 RDVDTVVVDGRVVVRNGELLTMDEGQI 436
|
|
| TIGR_CMR|CHY_0698 CHY_0698 "amidohydrolase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 144/431 (33%), Positives = 238/431 (55%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
++++ N IVTM+++ + + G +++ + IK IG S D+ D++ID ++++
Sbjct: 2 SILIKNGTIVTMNEKREILK-GDLYIEGNIIKDIGPSLDV------QTDKVIDAAGKVVI 54
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PG + TH+H Q L +G ADD++L+ WL RIWP E E Y S +L GI EL G
Sbjct: 55 PGLIQTHIHLCQTLFRGQADDLELLDWLKLRIWPLEGGHDPESLYYSAML-GIGELFKGG 113
Query: 139 VTCFAE-AGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197
T + A H +A+ G+RA + MD G +P S TT++ I +L
Sbjct: 114 TTAIVDMATVNHTDSNFQAIYDSGIRAISGKCMMDYGTEVPKSMQ-DTTENAIDESVQLL 172
Query: 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257
K H +GRI F R ++ T+ LL E +A ++K +H H +E E ++V+ R
Sbjct: 173 EKWHGKDNGRILYAFTPRFAVSCTEDLLKEVVKLAEQYKVRVHTHASENKGEVELVLKER 232
Query: 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPI 316
+ + V +L+K+ NL+ AH + ++ E+ +L+ + K++HCP+S +++ G A I
Sbjct: 233 GMRN--VLYLEKLGMTAPNLILAHCIHLDEREMKVLAESKTKIAHCPSSNLKLASGIAKI 290
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
E+L +S+ DGAP NN + EM +A+LI K F P ++PA+ V +
Sbjct: 291 PELLEMGAEISIAADGAPCNNNLDAFIEMRMAALIQKP---FYG----PTSMPAQKVFEL 343
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--DRITSLVYCMRTENVVSV 434
ATI GA+++ ++ IGSLE GKKAD+V+VD P + T LVY ++ NV++
Sbjct: 344 ATIGGARAMGLEDQIGSLEVGKKADVVIVDLDEMRTTPNEGVNIYTQLVYQAQSSNVLTT 403
Query: 435 MCNGQWVMKNK 445
+ +G+ VM+N+
Sbjct: 404 IVDGKIVMENR 414
|
|
| POMBASE|SPAC1F8.04c SPAC1F8.04c "hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 139/455 (30%), Positives = 239/455 (52%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQ--DRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
M+ +A I+T++ + +G + V + I IG++ ++ + + L+ I+
Sbjct: 1 MLYTHANIITVNPTRDILIDGAILVKDGSNTIDDIGKTDRLVSIYPNEKHK--SLEGHIV 58
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PG ++ HVH +Q L + ADD+ L++WL D +W + N T+ED Y+++ L E++ SG
Sbjct: 59 MPGLISLHVHLAQSLLRSAADDLPLISWLCDTVWKMQGNFTQEDGYVASQLTIAEMLKSG 118
Query: 139 VTCFAEA-GGQH--VSEMAKAVELLGLRACLVQSTMD-----CGEGLPASWAVRTTDDCI 190
T F EA Q + KAV G+R C+ + MD G+ + + +
Sbjct: 119 TTTFVEALFAQRYGIEGAVKAVIESGIRGCIGKVVMDQPRYATQTGVSMHEGLIENSNSL 178
Query: 191 QSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250
E ++K H +GR+ IWFG R ++ L + +AR GI MH AE+ +
Sbjct: 179 NQAVESHSKFHGKGNGRVEIWFGARTPGGVSEELYRKMVKIARANNIGITMHCAEVKADR 238
Query: 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG--VKVSHCPASAM 308
+ +H +T+ + L + AH V ++ ++ +L + G V+HCP S
Sbjct: 239 EFFASK---EHTPMTYCKDLGLLGPKTVLAHMVHLDTQDLEILEKHGNGTSVAHCPVSNS 295
Query: 309 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 367
++ G AP+KEML I V +G DG P NN M ++ EM +ASL+ K +G DP+
Sbjct: 296 KLGSGIAPLKEMLEKSIIVGIGCDGCPCNNTMDLLQEMKMASLLPKA----LHG--DPSI 349
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV-PVHDRITSLVYCM 426
+PAE ++ MATINGAK+ L +D+GSLE GKKAD + +D + P+ D ++++VY
Sbjct: 350 VPAEKIVEMATINGAKA-LGRDDLGSLEVGKKADFISLDLSNKLYAQPLRDLVSAVVYIA 408
Query: 427 RTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 461
+V +V+ +G+ ++++ +L + +L K
Sbjct: 409 TGADVATVVIDGKLIVEDHVLLTIDEPKLIDKAKK 443
|
|
| UNIPROTKB|Q81S14 mtaD "5-methylthioadenosine/S-adenosylhomocysteine deaminase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 137/438 (31%), Positives = 216/438 (49%)
Query: 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVN 84
NA IVTM++++ V NG + V D+I + S + F D++ID++ + +LPG VN
Sbjct: 7 NATIVTMNEQNEVIENGYIIVENDKIIDVN-SGEFASDFE--VDEVIDMKGKWVLPGLVN 63
Query: 85 THVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE 144
TH H L +GI DD+ L WL RIWP ES T E + ST L +E++ SG T F++
Sbjct: 64 THTHVVMSLLRGIGDDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSD 123
Query: 145 AG---GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
G + + V G+RA + ++ G A+ + E Y K +
Sbjct: 124 MFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTQEDEKKAIE--------EAEKYVKRY 175
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261
+ G + + LL E +A E +T +H+H++E E V D + +
Sbjct: 176 YNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETERE---VRDI-EAQY 231
Query: 262 GT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKE 318
G V ++ + + AH V +N E L+ V+V+H P S +++ G A +K
Sbjct: 232 GKRPVEYVASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSGIANVKA 291
Query: 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378
ML A + V + TD SNN + + +EM +A+L+ KG D ALP ET L +AT
Sbjct: 292 MLEAGMKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATALPVETALTLAT 345
Query: 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRTENVVSVMCN 437
GA V+ GSLE GK AD + +DP + P + P + ++ LVY +++ V+ N
Sbjct: 346 -KGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIIN 404
Query: 438 GQWVMKNKKILLLMRGRL 455
G+ V+ N + L R+
Sbjct: 405 GKRVVWNGECKTLDEERI 422
|
|
| TIGR_CMR|BA_1865 BA_1865 "chlorohydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 137/438 (31%), Positives = 216/438 (49%)
Query: 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVN 84
NA IVTM++++ V NG + V D+I + S + F D++ID++ + +LPG VN
Sbjct: 7 NATIVTMNEQNEVIENGYIIVENDKIIDVN-SGEFASDFE--VDEVIDMKGKWVLPGLVN 63
Query: 85 THVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE 144
TH H L +GI DD+ L WL RIWP ES T E + ST L +E++ SG T F++
Sbjct: 64 THTHVVMSLLRGIGDDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSD 123
Query: 145 AG---GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
G + + V G+RA + ++ G A+ + E Y K +
Sbjct: 124 MFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTQEDEKKAIE--------EAEKYVKRY 175
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261
+ G + + LL E +A E +T +H+H++E E V D + +
Sbjct: 176 YNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETERE---VRDI-EAQY 231
Query: 262 GT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKE 318
G V ++ + + AH V +N E L+ V+V+H P S +++ G A +K
Sbjct: 232 GKRPVEYVASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSGIANVKA 291
Query: 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378
ML A + V + TD SNN + + +EM +A+L+ KG D ALP ET L +AT
Sbjct: 292 MLEAGMKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATALPVETALTLAT 345
Query: 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRTENVVSVMCN 437
GA V+ GSLE GK AD + +DP + P + P + ++ LVY +++ V+ N
Sbjct: 346 -KGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIIN 404
Query: 438 GQWVMKNKKILLLMRGRL 455
G+ V+ N + L R+
Sbjct: 405 GKRVVWNGECKTLDEERI 422
|
|
| UNIPROTKB|Q48FM5 PSPPH_3669 "Hydrolase, Atz/Trz family" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 135/431 (31%), Positives = 217/431 (50%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++L A +V ++ V ++ G+ V I IG + L+Q A Q+ +L +L P
Sbjct: 10 LLLLPAWLVPVEPAGVVLKDHGIGVRDGCIVYIGPRTEALRQ---NAVQVQELPGMLLSP 66
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYI--STLLCGIELIHSG 138
G +N H H + L +G+ADD+ LMTWL D IWP E ED ++ T L E + G
Sbjct: 67 GLINAHGHAAMTLFRGLADDLPLMTWLQDHIWPAEGKWVNED-FVRDGTDLAIAEQLKGG 125
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198
+TCF++ + A+ V G+RA + +D P A TTD+ + + EL+
Sbjct: 126 ITCFSDMYF-YPKVAAERVHASGMRAQITVPVLD----FPIPGA-HTTDEALHNGIELFN 179
Query: 199 K-HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257
HH RI+I FG D L + R +A E I MHV E +E + ++ R
Sbjct: 180 DLAHHP---RIKIAFGPHAPYTVGDENLEKVRVIADELDAMIQMHVHETAFEVEQAVEQR 236
Query: 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPI 316
+ + L+++ L + H +N ++ LL + V HCP S +++ GF P+
Sbjct: 237 Q--ERPLARLNRLGMLGPRFQAVHMTQINDDDLALLVESNTNVIHCPESNLKLASGFCPV 294
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
+ + A + V++GTDGA SNN + ++ E A+L+ K V + T AL A LRM
Sbjct: 295 ERLWQAGVNVAVGTDGAASNNDLDLLGETRTAALLAKA--VAGSAT----ALDAHRALRM 348
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMC 436
AT+NGA+++ + GSLE GK ADMV D P++D ++ L+Y + V V
Sbjct: 349 ATLNGARALGIQAETGSLEIGKAADMVAFDLSGLAQQPIYDPVSQLIYATGRDCVSHVWV 408
Query: 437 NGQWVMKNKKI 447
G+ ++ +++
Sbjct: 409 AGKQLLDARRL 419
|
|
| TIGR_CMR|CBU_0521 CBU_0521 "chlorohydrolase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 124/412 (30%), Positives = 204/412 (49%)
Query: 35 SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94
+++ N + V + I + A+ ++++ ADQ ++L ++LPG VN H HT L
Sbjct: 53 NQILENFALAVRDEYIVDLLPQAEANKKYT--ADQHLELNDHVVLPGLVNAHTHTPMNLF 110
Query: 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSY-ISTLLCGIELIHSGVTCFAEAGGQHVSEM 153
+G+ADD+ L+ WL + IWP E + +S T L E++ G TCF + H +
Sbjct: 111 RGLADDLQLLDWLQNHIWPAEKALINAESVRAGTRLAIAEMLRGGTTCFNDHYFFH-DTI 169
Query: 154 AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIW-F 212
AKA G+RA + M +P WA ++Q+ L +H+ + W
Sbjct: 170 AKAASEAGMRALIGVVIMS----VPTEWASDEKAYLARAQETLEKAENHS----LITWAL 221
Query: 213 GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF 272
+D E + +A + IH+H+ E E + + + L +
Sbjct: 222 APHAPYTVSDTAFKEIKKLAEYYDLPIHIHLHETKVE--IEQGLKSYGKRPLAHLHDLGL 279
Query: 273 LQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTD 331
L L++ H + EI L++ + HCP S +++ G API +++ A + V++GTD
Sbjct: 280 LSQRLIAVHMTQLTSEEIKLVADTQTNIVHCPESNLKLSSGIAPIAKLVDAGVNVAIGTD 339
Query: 332 GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391
GA SNN + + EM AS K +G DP LPA +L+MAT+NGAK++ ++ I
Sbjct: 340 GAASNNDLDLFGEMRTASFTAK-----VSGL-DPTHLPAPEILKMATLNGAKALGLEDKI 393
Query: 392 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443
GSLE GK AD++ VD S+ PV + ++ LVY + V V G+ ++K
Sbjct: 394 GSLEPGKFADVIAVDLSSFLTQPVFNPVSHLVYAINRLQVSDVWVAGKQLLK 445
|
|
| DICTYBASE|DDB_G0285467 DDB_G0285467 "putative amidohydrolase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 123/415 (29%), Positives = 218/415 (52%)
Query: 58 DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES- 116
D+ + S + I IL PGF+N H H++ L +G ADDV L WL IWP E+
Sbjct: 72 DLKEMNSDTSSSISSTSEYILAPGFINMHTHSAMSLLRGYADDVSLHDWLTKFIWPAEAQ 131
Query: 117 NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEM-AKAVELLGLRACLVQSTMDCGE 175
++ EE + T L +E+I +G TC + + E+ A+ VE G+RA L +
Sbjct: 132 HVGEEFVKVGTELACLEMIKTGTTCCNDM--YYYPEVSAQVVEQFGMRATLAAPIIK--- 186
Query: 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235
P +A ++ + I+ +L K+ + +I+I G + TD L+ ++++ ++
Sbjct: 187 -FPTVYA-QSEQEYIEKGIQLIEKYKDHS--KIKISLGPHAVYTITDEAYLKVKELSEKY 242
Query: 236 KTGIHMHVAEIPYENQVVMDTRKVD-HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS 294
IH H+ E +E V + KV + L + L ++L++AH + ++ L +
Sbjct: 243 GVKIHTHLHETTHE---VSEEVKVSGKRPIERLRDLGVLSSSLIAAHMTQLTSEDLDLTA 299
Query: 295 RAGVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN 352
++G+ V HCP S +++ G +P+ ++L + VS+GTD A SN+ + ++ E+ A+ I+
Sbjct: 300 KSGINVVHCPESNLKLGVKGISPVHKLLKQGVNVSVGTDSAASNDDLDMLGELRTAAYID 359
Query: 353 K-GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 411
K + +P P+ +L MATINGAK++ D+ +GSL+ GK AD + V S P
Sbjct: 360 KLSANTHSIEGGEPVT-PSYKILSMATINGAKALGIDDKVGSLQIGKFADFIAVKVSSHP 418
Query: 412 MVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL----MRGRLFQLQDKL 462
V+D I+ LVY + T +V V G+ +++N K+ + ++ R+ + K+
Sbjct: 419 ---VYDPISHLVY-VGTNHVTDVWVAGKQLLRNSKLTTVNENQVKSRVLEFSQKI 469
|
|
| TIGR_CMR|CHY_1438 CHY_1438 "amidohydrolase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 113/371 (30%), Positives = 188/371 (50%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
T+++ N ++ ++K + V + + ++I IG ++ + + +IID +++ L
Sbjct: 6 TILIKNTTVLDLNKFAAV--ENDILIEGNKISKIGVDIEVNDKENL---KIIDGSNKVAL 60
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H + L +G +DD+ LM WL++ IWP ES +T ED Y +LL +E+I SG
Sbjct: 61 PGLINGHTHVAMTLFRGASDDLPLMDWLNNVIWPSESRLTGEDVYWGSLLGIVEMIKSGT 120
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQS--TMDCGEGLPASWAVRTTDDCIQSQKELY 197
T F + + E+A AVE G+RA L + +D G ++ + D I+
Sbjct: 121 TTFCDMYF-FMDEVAHAVEQSGIRAILSRGMVALDPENG---EKGLKESIDFIE------ 170
Query: 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257
K A+GRI L + A+ I++H++E E ++
Sbjct: 171 -KWQGKANGRITTALAPHAPYTCPPEFLKDVIWEAKRLNVPINIHISETLDEISII---- 225
Query: 258 KVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFA 314
K +GT V L+ + + + AH V V+ EI +L R V H P S M++ G A
Sbjct: 226 KERYGTTPVRHLESLGLFEVKTIGAHLVHVDDEEIQILKRYQVGAIHNPQSNMKLASGIA 285
Query: 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374
P+ +ML A + V LGTDGA SNN + +++E+ AS + K + +P AL A+T +
Sbjct: 286 PVAKMLEAGVLVGLGTDGAASNNDLDMIEELRAASYLQKVSSM------NPEALNAKTSI 339
Query: 375 RMATINGAKSV 385
MAT GA+++
Sbjct: 340 AMATSLGARAL 350
|
|
| TIGR_CMR|SPO_2957 SPO_2957 "hydroxydechloroatrazine ethylaminohydrolase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 112/454 (24%), Positives = 196/454 (43%)
Query: 22 ILHNA-VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ NA I+TMD R + + + AIG + L ++ + + ++ P
Sbjct: 5 LIRNADTILTMDAGRRELAGADILIRDGIVAAIGPNLATL-------GEVHEARGCVVTP 57
Query: 81 GFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
G VNTH H Q L + + D L WL ++P + E+ ++S EL SG
Sbjct: 58 GLVNTHHHLYQSLTRAVPGGQDALLFGWLKT-LYPIWARFGPEEMFVSAQTGLAELALSG 116
Query: 139 VTCFAE-----AGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDDCI 190
T ++ G + + A LGLR + M GE GLP V +
Sbjct: 117 CTLSSDHLYLYPNGARLDDTIAAATELGLRFHPTRGAMSIGESAGGLPPDTLVEGEAAIL 176
Query: 191 QSQKELYAKHHHAADGRI-RIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249
+ H A +G + R+ + + L+ + +AR+ +H H+AE +
Sbjct: 177 DDMIRVVDAFHDAGEGSMCRVGLAPCSPFSVSRDLMRDAALLARDKGVMLHTHLAE--ND 234
Query: 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309
+ + + + + + ++ AH V ++ EI L +R+ V+HCP S R
Sbjct: 235 EDIAYSLAQFGCRPGQYAEDLGWTGPDVWHAHCVKLDGQEIDLFARSRTGVAHCPCSNCR 294
Query: 310 M-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 368
+ G AP++ M A + V LG DG+ SN+ +++ E A L+ + A G A+
Sbjct: 295 LGSGIAPVRAMRDAGVSVGLGVDGSASNDSGNLMGEARQAMLLQR----VARGAD---AM 347
Query: 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRT 428
A L +AT GA VL D G LE GK+AD+ + D D +L+ T
Sbjct: 348 SAREALEIATRGGA-DVLGRPDCGRLELGKRADIAIWDVSGINSAGSWDP-AALLLAGPT 405
Query: 429 ENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 462
V + G+ ++++ +I+ + + + Q++L
Sbjct: 406 R-VKHLFVEGRQIVRDGQIITIDLPHMIERQNRL 438
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O27549 | MTAD_METTH | 3, ., 5, ., 4, ., 3, 1 | 0.3473 | 0.8476 | 0.9250 | yes | no |
| B7IS56 | MTAD_BACC2 | 3, ., 5, ., 4, ., 3, 1 | 0.3120 | 0.8798 | 0.9425 | yes | no |
| Q92342 | YDI4_SCHPO | No assigned EC number | 0.3026 | 0.9184 | 0.9244 | yes | no |
| Q2LTB7 | MTAD1_SYNAS | 3, ., 5, ., 4, ., 3, 1 | 0.3155 | 0.8798 | 0.9255 | yes | no |
| Q0AYV2 | MTAD_SYNWW | 3, ., 5, ., 4, ., 3, 1 | 0.3519 | 0.8690 | 0.9396 | yes | no |
| B0K2W0 | MTAD_THEPX | 3, ., 5, ., 4, ., 3, 1 | 0.3379 | 0.8690 | 0.9396 | yes | no |
| B5YLB7 | MTAD_THEYD | 3, ., 5, ., 4, ., 3, 1 | 0.3064 | 0.9012 | 0.9567 | yes | no |
| C6A048 | MTAD_THESM | 3, ., 5, ., 4, ., 3, 1 | 0.3120 | 0.8497 | 0.9339 | yes | no |
| A5D1G6 | MTAD_PELTS | 3, ., 5, ., 4, ., 3, 1 | 0.3555 | 0.8755 | 0.9422 | yes | no |
| Q466Q9 | MTAD_METBF | 3, ., 5, ., 4, ., 3, 1 | 0.3515 | 0.8862 | 0.9560 | yes | no |
| A3DEQ2 | MTAD_CLOTH | 3, ., 5, ., 4, ., 3, 1 | 0.3123 | 0.8755 | 0.9466 | yes | no |
| B1I2P4 | MTAD_DESAP | 3, ., 5, ., 4, ., 3, 1 | 0.3398 | 0.8304 | 0.9 | yes | no |
| Q63CU1 | MTAD_BACCZ | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| B7JJI0 | MTAD_BACC0 | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| Q5JER0 | MTAD_PYRKO | 3, ., 5, ., 4, ., 3, 1 | 0.3259 | 0.8197 | 0.9009 | yes | no |
| B0K8R8 | MTAD_THEP3 | 3, ., 5, ., 4, ., 3, 1 | 0.3379 | 0.8690 | 0.9396 | yes | no |
| Q8TYD4 | MTAD_METKA | 3, ., 5, ., 4, ., 3, 1 | 0.3204 | 0.8497 | 0.9187 | yes | no |
| A7GNR9 | MTAD_BACCN | 3, ., 5, ., 4, ., 3, 1 | 0.3020 | 0.8841 | 0.9471 | yes | no |
| O31352 | MTAD_BACC1 | 3, ., 5, ., 4, ., 3, 1 | 0.3120 | 0.8798 | 0.9425 | yes | no |
| Q3ITF7 | MTAD_NATPD | 3, ., 5, ., 4, ., 3, 1 | 0.3401 | 0.8004 | 0.8654 | yes | no |
| Q72B14 | MTAD_DESVH | 3, ., 5, ., 4, ., 3, 1 | 0.3294 | 0.8369 | 0.8823 | yes | no |
| Q8PUQ3 | MTAD_METMA | 3, ., 5, ., 4, ., 3, 1 | 0.3438 | 0.8948 | 0.9652 | yes | no |
| B7HIQ2 | MTAD_BACC4 | 3, ., 5, ., 4, ., 3, 1 | 0.3120 | 0.8798 | 0.9425 | yes | no |
| Q8TRA4 | MTAD_METAC | 3, ., 5, ., 4, ., 3, 1 | 0.3409 | 0.8819 | 0.9513 | yes | no |
| B8FRL9 | MTAD_DESHD | 3, ., 5, ., 4, ., 3, 1 | 0.3034 | 0.8626 | 0.9327 | yes | no |
| Q24UA2 | MTAD_DESHY | 3, ., 5, ., 4, ., 3, 1 | 0.3034 | 0.8626 | 0.9327 | yes | no |
| Q81F14 | MTAD_BACCR | 3, ., 5, ., 4, ., 3, 1 | 0.3143 | 0.8798 | 0.9425 | yes | no |
| A1VD37 | MTAD_DESVV | 3, ., 5, ., 4, ., 3, 1 | 0.3294 | 0.8369 | 0.8823 | yes | no |
| C3P768 | MTAD_BACAA | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| C3L6N3 | MTAD_BACAC | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| Q9V0Y5 | MTAD_PYRAB | 3, ., 5, ., 4, ., 3, 1 | 0.3010 | 0.8004 | 0.8776 | yes | no |
| A5UMN6 | MTAD_METS3 | 3, ., 5, ., 4, ., 3, 1 | 0.3685 | 0.8927 | 0.9563 | yes | no |
| C1EPN0 | MTAD_BACC3 | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| Q81S14 | MTAD_BACAN | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| Q12WS1 | MTAD_METBU | 3, ., 5, ., 4, ., 3, 1 | 0.3218 | 0.8712 | 0.9354 | yes | no |
| B8E183 | MTAD_DICTD | 3, ., 5, ., 4, ., 3, 1 | 0.3066 | 0.8519 | 0.9319 | yes | no |
| A0LMI3 | MTAD_SYNFM | 3, ., 5, ., 4, ., 3, 1 | 0.3265 | 0.8819 | 0.9383 | yes | no |
| A0RCM7 | MTAD_BACAH | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| B7HMN9 | MTAD_BACC7 | 3, ., 5, ., 4, ., 3, 1 | 0.3135 | 0.8841 | 0.9471 | yes | no |
| Q2NHL6 | MTAD_METST | 3, ., 5, ., 4, ., 3, 1 | 0.3165 | 0.8712 | 0.9552 | yes | no |
| Q6HK87 | MTAD_BACHK | 3, ., 5, ., 4, ., 3, 1 | 0.3089 | 0.8841 | 0.9471 | yes | no |
| B5YDN9 | MTAD_DICT6 | 3, ., 5, ., 4, ., 3, 1 | 0.3131 | 0.8454 | 0.9248 | yes | no |
| B6YUF8 | MTAD_THEON | 3, ., 5, ., 4, ., 3, 1 | 0.3236 | 0.8154 | 0.8962 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.4.28 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.5.4 | 0.766 |
| 3rd Layer | 3.5.4.n1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 466 | |||
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 1e-145 | |
| PRK07228 | 445 | PRK07228, PRK07228, N-ethylammeline chlorohydrolas | 1e-111 | |
| PRK06038 | 430 | PRK06038, PRK06038, N-ethylammeline chlorohydrolas | 8e-95 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 3e-84 | |
| PRK09045 | 443 | PRK09045, PRK09045, N-ethylammeline chlorohydrolas | 2e-81 | |
| PRK08393 | 424 | PRK08393, PRK08393, N-ethylammeline chlorohydrolas | 3e-74 | |
| PRK06380 | 418 | PRK06380, PRK06380, metal-dependent hydrolase; Pro | 1e-71 | |
| PRK08203 | 451 | PRK08203, PRK08203, hydroxydechloroatrazine ethyla | 3e-65 | |
| PRK06687 | 419 | PRK06687, PRK06687, chlorohydrolase; Validated | 1e-58 | |
| PRK15493 | 435 | PRK15493, PRK15493, 5-methylthioadenosine/S-adenos | 1e-57 | |
| PRK07203 | 442 | PRK07203, PRK07203, putative chlorohydrolase/amino | 4e-48 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 4e-44 | |
| TIGR03314 | 441 | TIGR03314, Se_ssnA, putative selenium metabolism p | 1e-42 | |
| PRK12393 | 457 | PRK12393, PRK12393, amidohydrolase; Provisional | 1e-39 | |
| cd01303 | 429 | cd01303, GDEase, Guanine deaminase (GDEase) | 2e-34 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 2e-31 | |
| PRK06151 | 488 | PRK06151, PRK06151, N-ethylammeline chlorohydrolas | 7e-29 | |
| PRK09228 | 433 | PRK09228, PRK09228, guanine deaminase; Provisional | 2e-19 | |
| cd01312 | 381 | cd01312, Met_dep_hydrolase_D, Metallo-dependent hy | 3e-19 | |
| cd01313 | 418 | cd01313, Met_dep_hydrolase_E, Metallo-dependent hy | 8e-19 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 2e-17 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 4e-17 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 1e-15 | |
| PRK08418 | 408 | PRK08418, PRK08418, chlorohydrolase; Provisional | 1e-15 | |
| TIGR02022 | 454 | TIGR02022, hutF, formiminoglutamate deiminase | 1e-12 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 2e-11 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 4e-10 | |
| cd01305 | 263 | cd01305, archeal_chlorohydrolases, Predicted chlor | 9e-10 | |
| PRK09229 | 456 | PRK09229, PRK09229, N-formimino-L-glutamate deimin | 1e-09 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 2e-09 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 5e-09 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 7e-09 | |
| PRK07213 | 375 | PRK07213, PRK07213, chlorohydrolase; Provisional | 1e-08 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 4e-08 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 6e-08 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 1e-07 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 6e-07 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 1e-06 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 2e-06 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 3e-06 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 2e-05 | |
| PRK08418 | 408 | PRK08418, PRK08418, chlorohydrolase; Provisional | 5e-05 | |
| pfam07969 | 392 | pfam07969, Amidohydro_3, Amidohydrolase family | 7e-05 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 7e-05 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 8e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 1e-04 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 1e-04 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 2e-04 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 3e-04 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 5e-04 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 6e-04 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 6e-04 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 0.001 | |
| PRK14085 | 382 | PRK14085, PRK14085, imidazolonepropionase; Provisi | 0.001 | |
| PRK15446 | 383 | PRK15446, PRK15446, phosphonate metabolism protein | 0.001 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 0.002 | |
| PRK05985 | 391 | PRK05985, PRK05985, cytosine deaminase; Provisiona | 0.002 | |
| cd01295 | 422 | cd01295, AdeC, Adenine deaminase (AdeC) directly d | 0.002 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 0.002 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 0.003 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 421 bits (1086), Expect = e-145
Identities = 171/431 (39%), Positives = 251/431 (58%), Gaps = 23/431 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N IVT D RV +G V V RI A+G + + AD++ID + ++++P
Sbjct: 1 ILIRNGTIVTTD-PRRVLEDGDVLVEDGRIVAVGPAL---PLPAYPADEVIDAKGKVVMP 56
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G+ADD+ LM WL D IWP E +TEED Y+ LL E+I SG T
Sbjct: 57 GLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTT 116
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
FA+ + +A+A E LG+RA L + MD G V T++ + + L +
Sbjct: 117 TFADMYFFYPDAVAEAAEELGIRAVLGRGIMDLGTE-----DVEETEEALAEAERLIREW 171
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
H AADGRIR+ +D LL E ++ARE+ +H+H+AE E ++
Sbjct: 172 HGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDE----VEESLEK 227
Query: 261 HG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIK 317
+G V +L+++ L +++ AH VW+ EI LL+ G V+H PAS M++ G AP+
Sbjct: 228 YGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPASNMKLASGIAPVP 287
Query: 318 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377
EML A + V LGTDGA SNN + + +EM LA+L+ K DP ALPAE L MA
Sbjct: 288 EMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLA------HGDPTALPAEEALEMA 341
Query: 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCN 437
TI GAK++ D +IGSLE GKKAD++++D ++PVHD I+ LVY +V +V+ N
Sbjct: 342 TIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSANGGDVDTVIVN 400
Query: 438 GQWVMKNKKIL 448
G+ VM++ ++L
Sbjct: 401 GRVVMEDGELL 411
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (858), Expect = e-111
Identities = 154/433 (35%), Positives = 237/433 (54%), Gaps = 19/433 (4%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
T+++ NA IVTM+ R +G V + DRI A+G D+ + D ID +++
Sbjct: 1 MTILIKNAGIVTMN-AKREIVDGDVLIEDDRIAAVGDRLDL-----EDYDDHIDATGKVV 54
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PG + H+H Q L +GIADD++L+ WL DRIWP E+ E Y S LL ELI SG
Sbjct: 55 IPGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESG 114
Query: 139 VTCFAEAGGQHVSEMA-KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197
T + H ++ A +A G+RA L + MD G+ +P T+ + L
Sbjct: 115 TTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ-EDTEASLAESVRLL 173
Query: 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257
K H A +GRIR F R ++ T+ LL RD+A E+ IH H +E E + V +
Sbjct: 174 EKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEET 233
Query: 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPI 316
+ + + +LD++ +L+ AH VW++ E +L+ G V+HCP+S +++ G AP+
Sbjct: 234 GMRN--IHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPSSNLKLASGIAPV 291
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
++L I V+LG DGAP NN + EM A+LI K + P A+PA TV M
Sbjct: 292 PDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQKVDRL------GPTAMPARTVFEM 345
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--DRITSLVYCMRTENVVSV 434
AT+ GAK+ ++++IGSLE GKKAD+ ++D P H D ++ LVY +V +
Sbjct: 346 ATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHLVYAAHGSDVETT 405
Query: 435 MCNGQWVMKNKKI 447
M +G+ VM++ ++
Sbjct: 406 MVDGKIVMEDGEL 418
|
Length = 445 |
| >gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 8e-95
Identities = 151/431 (35%), Positives = 237/431 (54%), Gaps = 27/431 (6%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD + + G V + I + +S AD +ID + +++P
Sbjct: 4 IIIKNAYVLTMD--AGDLKKGSVVIEDGTITEVSEST------PGDADTVIDAKGSVVMP 55
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G ADD+ L WL+D IWP E+ +T ED Y +LL +E+I SG T
Sbjct: 56 GLVNTHTHAAMTLFRGYADDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTT 115
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
FA+ ++ E+AKAVE GLRA L G+ + ++ K +
Sbjct: 116 SFADM-YFYMDEVAKAVEESGLRAAL-------SYGMIDLGDDEKGEAELKEGKRFVKEW 167
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
H AADGRI++ +G ++ L + + +A + GIH+HV E E ++ +
Sbjct: 168 HGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLET--EAELNQMKEQYG 225
Query: 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEM 319
+V +LD I FL ++L+AH VW++ +I +L GV VSH P S M++ G AP+ ++
Sbjct: 226 MCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNMKLASGIAPVPKL 285
Query: 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 379
L + VSLGTDG SNN + + +EM A+L++K T DP ALPA VL MAT+
Sbjct: 286 LERGVNVSLGTDGCASNNNLDMFEEMKTAALLHK------VNTMDPTALPARQVLEMATV 339
Query: 380 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 439
NGAK++ + G L+ G AD+++VD + PV D + LVY +V + + +G+
Sbjct: 340 NGAKAL--GINTGMLKEGYLADIIIVDMNKPHLTPVRDVPSHLVYSASGSDVDTTIVDGR 397
Query: 440 WVMKNKKILLL 450
+M++ K+L +
Sbjct: 398 ILMEDYKVLCM 408
|
Length = 430 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 3e-84
Identities = 137/443 (30%), Positives = 226/443 (51%), Gaps = 27/443 (6%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+ +++ +++T D E R+ +G + + +I AIG +A+ +++ID + ++
Sbjct: 1 MTMLLIRGDLLLTNDPEGRI-EDGDLVIEDGKIVAIGANAEGPP-----DEEVIDAKGKL 54
Query: 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIH 136
+LPGFVN H H Q L +G+ADD+ L+ WL +WP E+ + TEED Y LL +E++
Sbjct: 55 VLPGFVNAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLR 114
Query: 137 SGVTC---FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ 193
+G T + + +A +GLRA L D P A TD+ ++
Sbjct: 115 NGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQD--VAFPDPGAE--TDEELEET 170
Query: 194 KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253
+EL + H GR + + LL ++AR++ +H+H+AE E V
Sbjct: 171 EELLREAHGL--GRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDE--VE 226
Query: 254 MDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LG 312
V LD + L ++ L AH V ++ E+ LL+ +G V HCP S +++ G
Sbjct: 227 RVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSG 286
Query: 313 FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 372
AP++ +L + V+LGTDGA SNN + ++ EM A L+ K AA
Sbjct: 287 IAPVRRLLERGVNVALGTDGAASNNVLDMLREMRTADLLQKLA------GGLLAAQLPGE 340
Query: 373 VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 432
L MAT+ GAK L +DIGSLE GKKAD+VV+D + + P+ ++ LV+ ++V
Sbjct: 341 ALDMATLGGAK-ALGLDDIGSLEVGKKADLVVLDASAPHLAPLR-PVSRLVFAAGGKDVD 398
Query: 433 SVMCNGQWVMKNKKILLLMRGRL 455
V+ +G+ VM++ ++L
Sbjct: 399 RVLVDGRLVMEDGRLLARAEAAR 421
|
Length = 421 |
| >gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 2e-81
Identities = 142/441 (32%), Positives = 221/441 (50%), Gaps = 38/441 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ IV ++ V + V + RI AI A+ +++ A + ++L +L+P
Sbjct: 9 LLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYA--AAETVELPDHVLIP 66
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGV 139
G +N H H + L +G+ADD+ LMTWL D IWP E E+ TLL E++ G
Sbjct: 67 GLINAHTHAAMSLLRGLADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGT 126
Query: 140 TCFAEAGGQHVSEM-------AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQS 192
TCF ++M A+A G+RA + +D P +WA D+ +
Sbjct: 127 TCF--------NDMYFFPEAAAEAAHQAGMRAQIGMPVLD----FPTAWA-SDADEYLAK 173
Query: 193 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252
EL+ + H I F +D L R +A + IH+H+ E E
Sbjct: 174 GLELHDQWRH--HPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQE--- 228
Query: 253 VMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 310
+ D+ K HG + L ++ L L++ H + EI LL+ G V HCP S +++
Sbjct: 229 IADSLK-QHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHCPESNLKL 287
Query: 311 L-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 369
GF P+ ++L A + V+LGTDGA SNN + + EM A+L+ K D ALP
Sbjct: 288 ASGFCPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKA------VAGDATALP 341
Query: 370 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 429
A T LRMAT+NGA+++ D++IGSLE GK+AD+V VD PV+D ++ LVY E
Sbjct: 342 AHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVYDPVSQLVYAAGRE 401
Query: 430 NVVSVMCNGQWVMKNKKILLL 450
V V G+ ++ ++++ L
Sbjct: 402 QVSHVWVAGKQLLDDRELTTL 422
|
Length = 443 |
| >gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 3e-74
Identities = 136/410 (33%), Positives = 225/410 (54%), Gaps = 27/410 (6%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVD 102
V + ++I + ++ ++ AD +ID ++ PGF+N H H+ L +G+ADDV
Sbjct: 23 VLIEGNKIVEVKRN------INKPADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVP 76
Query: 103 LMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGL 162
LM WL + IWP E + +D Y L +E+I SG T F + H+ E+AKA +GL
Sbjct: 77 LMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF-HMEEVAKATLEVGL 135
Query: 163 RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATD 222
R L +D G+ ++ T+ ++ ++L + R+ FG +
Sbjct: 136 RGYLSYGMVDLGDEEKREKEIKETEKLMEFIEKLNSP-------RVHFVFGPHAPYTCSL 188
Query: 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT 282
LL R+ ARE+ I +H++E E + + K V LD+I FL ++++AH
Sbjct: 189 ALLKWVREKAREWNKLITIHLSETMDEIKQI--REKYGKSPVVLLDEIGFLNEDVIAAHG 246
Query: 283 VWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSI 341
VW++ +I +L+ AGV V+H PAS M++ G P++++L+A + V+LGTDGA SNN + +
Sbjct: 247 VWLSSRDIRILASAGVTVAHNPASNMKLGSGVMPLRKLLNAGVNVALGTDGAASNNNLDM 306
Query: 342 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 401
+ EM LA+L++K DP AETV RMAT NGAK++ G ++ G AD
Sbjct: 307 LREMKLAALLHKVH------NLDPTIADAETVFRMATQNGAKALGLKA--GVIKEGYLAD 358
Query: 402 MVVVDPFSWP-MVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450
+ V+D F+ P + P+++ I+ LVY +V + + +G+ VM + ++L L
Sbjct: 359 IAVID-FNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVMLDGEVLTL 407
|
Length = 424 |
| >gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 1e-71
Identities = 144/443 (32%), Positives = 236/443 (53%), Gaps = 53/443 (11%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
++++ NA IVT +++ + + G V++ ++I +G + AD IID ++++
Sbjct: 2 SILIKNAWIVTQNEKREILQ-GNVYIEGNKIVYVGDVNE-------EADYIIDATGKVVM 53
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +NTH H +KG+ DDVDL +L + + Y+S T E Y S L E+I+SG+
Sbjct: 54 PGLINTHAHVGMTASKGLFDDVDLEEFL-MKTFKYDSKRTREGIYNSAKLGMYEMINSGI 112
Query: 140 TCFAEAGGQHVSE--MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQK--- 194
T F + + SE +AKA E LG+RA L SWA D+ I +QK
Sbjct: 113 TAFVDL---YYSEDIIAKAAEELGIRAFL-------------SWA--VLDEEITTQKGDP 154
Query: 195 ----ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250
E + + H + + G++ I A D L+ +++A ++ T +HMH++E E
Sbjct: 155 LNNAENFIREHRNEE-LVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKE- 212
Query: 251 QVVMDTRK-VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309
V D K V L+KI FL + L++AH VW + EI LLS+ GVKVS S +
Sbjct: 213 --VYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFK 270
Query: 310 ML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 367
+ G PI EML I V++GTD SNN + + + M ++L K N D +
Sbjct: 271 LGTGGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVK------NERWDASI 324
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--HDRITSLVYC 425
+ A+ +L ATIN AK++ + + GS+E GK AD+V++D + M+P ++ ++++VY
Sbjct: 325 IKAQEILDFATINAAKAL--ELNAGSIEVGKLADLVILDARAPNMIPTRKNNIVSNIVYS 382
Query: 426 MRTENVVSVMCNGQWVMKNKKIL 448
+ NV V+ NG+ + +N ++
Sbjct: 383 LNPLNVDHVIVNGKILKENGRLN 405
|
Length = 418 |
| >gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 3e-65
Identities = 132/451 (29%), Positives = 211/451 (46%), Gaps = 42/451 (9%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
++ I + IVTMD R +GG+ V RI +G + Q AD++ D + +
Sbjct: 1 TTLWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQP----ADEVFDARGHV 56
Query: 78 LLPGFVNTHVHTSQQLAKGI--ADDVDLMTWLHD--RIWPYESNMTEEDSYISTLLCGIE 133
+ PG VNTH H Q L + + A D +L WL +W + +T E ++T E
Sbjct: 57 VTPGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVW---ARLTPEMVRVATQTALAE 113
Query: 134 LIHSGVTC-------FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAV 183
L+ SG T F + + +A +G+R + +M GE GLP V
Sbjct: 114 LLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGESDGGLPPDSVV 173
Query: 184 RTTDDCIQSQKELYAKHHHAADG-RIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 242
D + + L ++H G +RI + + L+ E+ +AR +H H
Sbjct: 174 EDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTH 233
Query: 243 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302
+AE E + + V +L+ + +L ++ AH V ++ EI L+R G V+H
Sbjct: 234 LAETLDEEAFCL--ERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAH 291
Query: 303 CPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 361
CP S MR+ G AP++E+ A + V LG DG+ SN+ +++ E A L+ + R G
Sbjct: 292 CPCSNMRLASGIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQALLLQRLR----YG 347
Query: 362 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD----PFSWPMVPVHD 417
P A+ A L AT+ GA+ VL +DIGSL GK AD+ + D F+ HD
Sbjct: 348 ---PDAMTAREALEWATLGGAR-VLGRDDIGSLAPGKLADLALFDLDELRFA----GAHD 399
Query: 418 RITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448
+ +LV C VM G+WV+++ ++
Sbjct: 400 PVAALVLC-GPPRADRVMVGGRWVVRDGQLT 429
|
Length = 451 |
| >gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 1e-58
Identities = 123/432 (28%), Positives = 220/432 (50%), Gaps = 24/432 (5%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+ + IVT D++ V+ +G + V +I +GQ F + A+QIID Q ++PG
Sbjct: 3 VFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDK---PAFLEQAEQIIDYQGAWIMPG 59
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
VN H H++ +GI DD +L WL+D IWP ES T + + + E++ SG T
Sbjct: 60 LVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTT 119
Query: 142 FAE---AGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198
F + G + ++ + V+ +R C T+ E TT + I + +
Sbjct: 120 FNDMYNPNGVDIQQIYQVVKTSKMR-CYFSPTLFSSE-------TETTAETISRTRSIID 171
Query: 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258
+ + ++ + + LL + +MA+E +H+HVAE E+ +++ ++
Sbjct: 172 EILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIIL--KR 229
Query: 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIK 317
+ FL+++ +L + + AH V +N EI L+ + V ++H P S +++ G API
Sbjct: 230 YGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLASGIAPII 289
Query: 318 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377
++ A + V + TD SNN + + +E A+L+ K + D + P ET L++
Sbjct: 290 QLQKAGVAVGIATDSVASNNNLDMFEEGRTAALLQKMKS------GDASQFPIETALKVL 343
Query: 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMVPVHDRITSLVYCMRTENVVSVMC 436
TI GAK++ +N IGSLE GK+AD +V+ P + P + ++ LVY +++ +V V
Sbjct: 344 TIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQENMLSHLVYAVKSSDVDDVYI 403
Query: 437 NGQWVMKNKKIL 448
G+ V+K ++L
Sbjct: 404 AGEQVVKQGQVL 415
|
Length = 419 |
| >gnl|CDD|185390 PRK15493, PRK15493, 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (498), Expect = 1e-57
Identities = 133/425 (31%), Positives = 209/425 (49%), Gaps = 25/425 (5%)
Query: 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVN 84
NA IVTM++++ V NG + V D+I + S + F D++ID++ + +LPG VN
Sbjct: 7 NATIVTMNEQNEVIENGYIIVENDQIIDV-NSGEFASDFE--VDEVIDMKGKWVLPGLVN 63
Query: 85 THVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE 144
TH H L +GI DD+ L WL RIWP ES T E + ST L +E++ SG T F++
Sbjct: 64 THTHVVMSLLRGIGDDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSD 123
Query: 145 AG---GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
G + + V G+RA + ++ G A+ + E Y K +
Sbjct: 124 MFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDEKKAIE--------EAEKYVKRY 175
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261
+ G + + LL E +A E +T +H+H++E E + + +
Sbjct: 176 YNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDI--EAQYGK 233
Query: 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEML 320
V + + + AH V +N E L+ V+V+H P S +++ G A +K ML
Sbjct: 234 RPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSGIANVKAML 293
Query: 321 HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATIN 380
A I V + TD SNN + + +EM +A+L+ KG D ALP ET L +AT
Sbjct: 294 EAGIKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATALPVETALTLAT-K 346
Query: 381 GAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRTENVVSVMCNGQ 439
GA V+ GSLE GK AD + +DP + P + P + ++ LVY +++ V+ NG+
Sbjct: 347 GAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIINGK 406
Query: 440 WVMKN 444
V+ N
Sbjct: 407 RVVWN 411
|
Length = 435 |
| >gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 4e-48
Identities = 125/455 (27%), Positives = 208/455 (45%), Gaps = 63/455 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N +T D V +G + + + I IG + ++ ++ + ID + ++++P
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPD--AEFIDAKGKLIMP 59
Query: 81 GFVNTHVHTSQQLAKGIADDV----DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
G +N+H H LA+G+ ++ D ++ L + W + +T ED Y S L+C +E I
Sbjct: 60 GLINSHNHIYSGLARGMMANIPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIK 119
Query: 137 SGVTC-------FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTD-D 188
+GVT GG + +A A + +GLRA L C E T+D D
Sbjct: 120 NGVTTVFDHHASPNYIGGS-LFTIADAAKKVGLRAML------CYE---------TSDRD 163
Query: 189 CIQSQKE------LYAKHHHAADG-RIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 241
+ +E + KH A + FG+ +D L + R+ +E G H+
Sbjct: 164 GEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHI 223
Query: 242 HVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299
HVAE Y+ V D+ K +G V L L L+AH ++++ EI LL
Sbjct: 224 HVAEGIYD---VSDSHK-KYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTF 279
Query: 300 VSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVF 358
V H P S M +G+ P+ EM+ I + LGTDG S+ + + +A+ +K
Sbjct: 280 VVHNPESNMGNAVGYNPVLEMIKNGILLGLGTDGYTSD----MFESYKVANFKHK----H 331
Query: 359 ANGTTDPAALPAETVLRMATINGAKSV--LWDNDIGSLEAGKKADMVVVD--PFSWPMVP 414
A G DP E M N K + G LE G KAD+++VD P + P+
Sbjct: 332 AGG--DPNVGWPE-SPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPT-PLNE 387
Query: 415 VHDRITS-LVYCMRTENVVSVMCNGQWVMKNKKIL 448
D I +++ M +V + + NG+ VM+++K L
Sbjct: 388 --DNINGHILFGMNGGSVDTTIVNGKVVMEDRKFL 420
|
Length = 442 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-44
Identities = 110/444 (24%), Positives = 176/444 (39%), Gaps = 41/444 (9%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ ++TMD G + + DRI A+ S + +++D + I++P
Sbjct: 4 TLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE------APDAEVVDARGMIVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMT---WLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
G V+TH HT Q + +GI D L T +H + P ED YI+ LL +E + +
Sbjct: 58 GLVDTHRHTWQSVLRGIGADWTLQTYFREIHGNLGPM---FRPEDVYIANLLGALEALDA 114
Query: 138 GVT-----CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQS 192
GVT +H + + G+RA + P +D +
Sbjct: 115 GVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRRV 174
Query: 193 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252
+K ++ DG + + IR ++ + +ARE I MH
Sbjct: 175 KKRYFSSD----DGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQG-------- 222
Query: 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L 311
V L L +L H ++ E+ LL+ +G S P M M
Sbjct: 223 -FGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMGH 281
Query: 312 GFAPIKEMLHADICVSLGTDGAPSNN-----RMSIVDEMYLASLINKGREVFANGTT--D 364
G+ +L + SLG D S +M + A G
Sbjct: 282 GYPVTGRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARD---NAVHLREGGMPPP 338
Query: 365 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 424
L A VL ATI GA+++ ++ IGSL GK+AD+V++D + PVHD + ++V
Sbjct: 339 RLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVHDPVGAVVQ 398
Query: 425 CMRTENVVSVMCNGQWVMKNKKIL 448
NV SVM G+ V +N K+L
Sbjct: 399 SAHPGNVDSVMVAGRAVKRNGKLL 422
|
Length = 449 |
| >gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 1e-42
Identities = 117/444 (26%), Positives = 192/444 (43%), Gaps = 41/444 (9%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N V +D + G + + D IKA+G + ++ Q++ ID + ++++P
Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYP--EATFIDAKGKLIMP 58
Query: 81 GFVNTHVHTSQQLAKGIADDV----DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
GF+NTH H A+G+ D+ D ++ L + W + +T ED Y S L+C ++ I
Sbjct: 59 GFINTHNHFYSTFARGMMADIPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIK 118
Query: 137 SGVTC-------FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDC 189
SG T G +S + KA + GLR L T D G V
Sbjct: 119 SGCTTVIDHHASPNAITGS-LSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGV------ 171
Query: 190 IQSQKELYAKHHHAADGR-IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248
+ + K + + G +D L R+ + G H+HVAE Y
Sbjct: 172 --EENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIY 229
Query: 249 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 308
+ V K V L L + L+AH ++++ EI LL+ V H P S M
Sbjct: 230 D--VEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNPESNM 287
Query: 309 -RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 367
+G+ P+ M I + LGTDG S+ + + + A+ +K A G D A
Sbjct: 288 GNAVGYNPVLRMFKNGILLGLGTDGYTSD----MFESLKFANFKHK----DAGG--DLNA 337
Query: 368 LPAETVLRMATINGAK--SVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS-LVY 424
E M N + + G LE G KAD+++VD ++ P D I +++
Sbjct: 338 AWPE-SPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVD-YNAPTPLTADNINGHILF 395
Query: 425 CMRTENVVSVMCNGQWVMKNKKIL 448
M +V S M NG+ VM++++ L
Sbjct: 396 GMNGGSVDSTMVNGKVVMEDREFL 419
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. Length = 441 |
| >gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 122/455 (26%), Positives = 198/455 (43%), Gaps = 46/455 (10%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQS 75
S +I + A I+T G ++D RI AIG +++ID
Sbjct: 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALT------PLPGERVIDATD 54
Query: 76 QILLPGFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIE 133
++ PG+VNTH H Q L KG+ + L WL + + + E+ ++ + +E
Sbjct: 55 CVVYPGWVNTHHHLFQSLLKGVPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVE 114
Query: 134 LIHSGVTCFAE------AGGQHVSEMA--KAVELLGLRACL-----VQSTMDCGEGLPAS 180
L+ SG T A+ G + E LG+R L Q+ D GLP +
Sbjct: 115 LLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGGATQTRGDHP-GLPTA 173
Query: 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIM-------NATDRLLLETRDMAR 233
T D + + L +++H A+ +R R ++ + LL E AR
Sbjct: 174 LRPETLDQMLADVERLVSRYHDASPDSLR-----RVVVAPTTPTFSLPPELLREVARAAR 228
Query: 234 EFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLL 293
+H H++E + V K V F+ + ++L ++ AH V ++ EI LL
Sbjct: 229 GMGLRLHSHLSET--VDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALL 286
Query: 294 SRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN 352
++ G ++HCP S R+ G AP M A + VSLG DGA SN ++ E + A L++
Sbjct: 287 AQTGTGIAHCPQSNGRLGSGIAPALAMEAAGVPVSLGVDGAASNESADMLSEAHAAWLLH 346
Query: 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 412
+ G A E V+ T GA+ VL + IG+L G+ AD+ + D
Sbjct: 347 R----AEGG---ADATTVEDVVHWGTAGGAR-VLGLDAIGTLAVGQAADLAIYDLDDPRF 398
Query: 413 VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 447
+HD + V C V +++ NG+ V++N I
Sbjct: 399 FGLHDPAIAPVACGGPAPVKALLVNGRPVVENGAI 433
|
Length = 457 |
| >gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 108/437 (24%), Positives = 176/437 (40%), Gaps = 47/437 (10%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
+ ++ RV +G + VV I A G + + + A ++ID +Q +LPGF++TH+
Sbjct: 14 LELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAKPGA-RVIDSPNQFILPGFIDTHI 72
Query: 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-------SYISTLLCGIELIHSGVT 140
H Q G L+ WL +P E+ + ++ EL+ +G T
Sbjct: 73 HAPQYANIGSGLGEPLLDWLETYTFPEEAKFADPAYAREVYGRFLD------ELLRNGTT 126
Query: 141 C---FAEAGGQHVSEMAKAVELLGLRACLVQSTMD--CGEGL--PASWAVRTTDDCIQSQ 193
FA + + + G RA + MD E A + R T I+
Sbjct: 127 TACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIERW 186
Query: 194 KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAEIPYENQV 252
+ A R F + ++ LL +A+E I H++E E
Sbjct: 187 HGKSGRVKPAITPR----FAP----SCSEELLAALGKLAKEHPDLHIQTHISENLDEIAW 238
Query: 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML- 311
V + + DK L + AH V ++ E LL G V+HCP S + L
Sbjct: 239 VKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNL-FLG 297
Query: 312 -GFAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 369
G ++++L A I V LGTD G S++D + A +++ A L
Sbjct: 298 SGLFDVRKLLDAGIKVGLGTDVGG--GTSFSMLDTLRQAYKVSRLLGY---ELGGHAKLS 352
Query: 370 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSL------ 422
+AT+ GA+++ D+ IG+ E GK+ D VV+DP + P + R+ SL
Sbjct: 353 PAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRVESLEEALFK 412
Query: 423 -VYCMRTENVVSVMCNG 438
+Y N+ V G
Sbjct: 413 FLYLGDDRNIREVYVAG 429
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. Length = 429 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 95/403 (23%), Positives = 171/403 (42%), Gaps = 42/403 (10%)
Query: 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ--QL 93
F +G + V RI A+G A++ + +I D + +++PGF++TH+H Q +
Sbjct: 2 EYFEDGLLVVENGRIVAVGDYAELKETLPA-GVEIDDYRGHLIMPGFIDTHIHYPQTEMI 60
Query: 94 AKGIADDVDLMTWLHDRIWPYESNMTEED--SYISTLLCGIELIHSGVTC---FAEAGGQ 148
A + L+ WL +P E+ + D ++ EL+ +G T FA +
Sbjct: 61 A---SYGEQLLEWLEKYTFPTEARFADPDHAEEVAEFFLD-ELLRNGTTTALVFATVHPE 116
Query: 149 HVSEMAKAVELLGLRACLVQSTMD--CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADG 206
V + +A G+R + MD + L T + K L + H G
Sbjct: 117 SVDALFEAALKRGMRMIAGKVLMDRNAPDYL-----RDTAESSYDESKALIERWH----G 167
Query: 207 RIRIWFGI--RQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHGT 263
+ R+ + + R ++ L ++A+E+ + H++E E V +
Sbjct: 168 KGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDY 227
Query: 264 VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 322
+ D L + AH + ++ E L+ G ++HCP S + + G +K+ L
Sbjct: 228 LDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGSGLFNLKKALEH 287
Query: 323 DICVSLGTD--GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATIN 380
+ V LGTD G S + + + E Y S + R L +AT+
Sbjct: 288 GVRVGLGTDVGGGTSFSMLQTLREAYKVSQLQGAR------------LSPFEAFYLATLG 335
Query: 381 GAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSL 422
GA+++ D+ IG+ E GK+AD VV+DP + P + + +L
Sbjct: 336 GARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTL 378
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 7e-29
Identities = 112/458 (24%), Positives = 182/458 (39%), Gaps = 80/458 (17%)
Query: 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
R+ R+G V DRI +G F D++ID + ++ PGF++ +
Sbjct: 19 RLLRDGEVVFEGDRILFVGHR------FDGEVDRVIDAGNALVGPGFIDLDALS------ 66
Query: 96 GIADDVD---LMTWLHD-----RIWP-------YESNMTEEDSYISTLLCGIELIHSGVT 140
D+D L R+W T E+ +L+ +G+T
Sbjct: 67 ----DLDTTILGLDNGPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGIT 122
Query: 141 CFAEAG-------GQHVSEMAKAVEL---LGLRACLVQSTMDCGEGLPASWAVRTTDDCI 190
+ +E A A E LGLR L + G L A ++ D
Sbjct: 123 TAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGPAYRSGGSVLEADGSLEVVFDEA 182
Query: 191 QSQKEL-----YAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 244
+ L + K A +G +R +I T LL T ARE + +H A
Sbjct: 183 RGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLHCA 242
Query: 245 EIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTE---------IGLL 293
+ E ++T + HGT + +L + L LL H +++ + + LL
Sbjct: 243 QGVLE----VETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALL 298
Query: 294 SRAGVKVSHCPASAMRMLG----FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLAS 349
+ GV + HCP + R F +E A I ++LGTD P + M++ + L
Sbjct: 299 AEHGVSIVHCPLVSARHGSALNSFDRYRE---AGINLALGTDTFPPDMVMNMRVGLILGR 355
Query: 350 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS 409
++ D A A + AT+ GA++ L +D+G L G KAD+VV D
Sbjct: 356 VVEG----------DLDAASAADLFDAATLGGARA-LGRDDLGRLAPGAKADIVVFDLDG 404
Query: 410 WPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 447
M PV D I +LV +V +V +G+ VM++ ++
Sbjct: 405 LHMGPVFDPIRTLVTGGSGRDVRAVFVDGRVVMEDGRL 442
|
Length = 488 |
| >gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-19
Identities = 100/409 (24%), Positives = 167/409 (40%), Gaps = 54/409 (13%)
Query: 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ---- 91
R +G + V RI A G A++ Q A ++ D + +++LPGF++TH+H Q
Sbjct: 27 RYIEDGLLLVEDGRIVAAGPYAELRAQLPADA-EVTDYRGKLILPGFIDTHIHYPQTDMI 85
Query: 92 -QLAKGIADDVDLMTWLHDRIWPYESNMTEED--SYISTLLCGIELIHSGVTC---FAEA 145
+ L+ WL+ +P E + ++ EL+ +G T F
Sbjct: 86 ASYGEQ------LLDWLNTYTFPEERRFADPAYAREVAEFFLD-ELLRNGTTTALVFGTV 138
Query: 146 GGQHVSEMAKAVELLGLRACLVQSTMD--CGEGLPASWAVRTTDDCIQSQKELYAKHHHA 203
Q V + +A E +R + MD +GL T + K L + H
Sbjct: 139 HPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGL-----RDTAESGYDDSKALIERWH-- 191
Query: 204 ADGRIRIWFGI--RQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVD 260
G+ R+ + I R +T L +ARE I H++E E + +++
Sbjct: 192 --GKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDE---IAWVKELF 246
Query: 261 HGTVTFLD---KIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML--GFAP 315
+LD + L + AH + + E L+ G ++ CP S + L G
Sbjct: 247 PEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNL-FLGSGLFD 305
Query: 316 IKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374
+K A + V LGTD G S++ M A + + + L
Sbjct: 306 LKRADAAGVRVGLGTDVGG--GTSFSMLQTMNEAYKVQQLQGY---------RLSPFQAF 354
Query: 375 RMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSL 422
+AT+ GA+++ D+ IG+L GK+AD VV+DP + P + R SL
Sbjct: 355 YLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAESL 403
|
Length = 433 |
| >gnl|CDD|238637 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 30/201 (14%)
Query: 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR----------------KVDHGTVTFL 267
L + D+A++ + H E E + + +++ K + FL
Sbjct: 164 LAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFL 223
Query: 268 DKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML--GFAPIKEMLHADIC 325
D + L + H V+ N E +L+ G ++ CP S R+L G + E+ A I
Sbjct: 224 DMLGGLGTRVSFVHCVYANLEEAEILASRGASIALCPRSN-RLLNGGKLDVSELKKAGIP 282
Query: 326 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385
VSLGTDG SN +S++DE+ ++ D L +E +L MAT+ GA+++
Sbjct: 283 VSLGTDGLSSNISLSLLDELRALLDLHPEE--------DLLELASE-LLLMATLGGARAL 333
Query: 386 LWDNDIGSLEAGKKADMVVVD 406
+N G +EAGK+AD V +
Sbjct: 334 GLNN--GEIEAGKRADFAVFE 352
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 381 |
| >gnl|CDD|238638 cd01313, Met_dep_hydrolase_E, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 8e-19
Identities = 94/410 (22%), Positives = 146/410 (35%), Gaps = 71/410 (17%)
Query: 36 RVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94
RN + V D RI A+ A + + L LLPG N H H Q+
Sbjct: 6 GWERNVRIEVDADGRIAAVNPDT---------ATEAVALLGGALLPGMPNLHSHAFQRAM 56
Query: 95 KGIADDVDLMTWLHDRIWPYESNM-------TEEDSYISTLLCGIELIHSGVTCFAEAGG 147
G+ + D W + M T E IE++ +G+T E
Sbjct: 57 AGLTEYRGSAA---DSFWTWRELMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHY 113
Query: 148 QH----------VSEMAKAV----ELLGLRACLVQ---STMDCGEGLPASWAVR---TTD 187
H +E+A+ V G+ L+ + G P R +
Sbjct: 114 VHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPAPNPGQRRFINGYE 173
Query: 188 DCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247
D + ++ A RI + + A L K +H+H+AE P
Sbjct: 174 DFLGLLEKALRAVKEHAAARIGVAP---HSLRAVPAEQLAALAALASEKAPVHIHLAEQP 230
Query: 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT-----EIGLLSRAGVKVSH 302
E + V L L + L A V+ T E LL R+G V
Sbjct: 231 KEVDDCLAAHG--RRPVELL-----LDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGL 283
Query: 303 CPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEM----YLASLINKGRE 356
CP + L G P +L A + +G+D SN R+ +++E+ Y L ++ R
Sbjct: 284 CP-TTEANLGDGIFPAAALLAAGGRIGIGSD---SNARIDLLEELRQLEYSQRLRDRARN 339
Query: 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406
V A A +L A GA+++ G+LEAG +AD++ +D
Sbjct: 340 VLA----TAGGSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLD 383
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 418 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 2e-17
Identities = 78/371 (21%), Positives = 111/371 (29%), Gaps = 105/371 (28%)
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
I+LPG ++ HVH + EDSY + L ++
Sbjct: 1 IVLPGLIDAHVH------------------------LESPLLRGEDSYEAILTGAKAMLR 36
Query: 137 SGVTCFAE-------AGGQHVSEMAKAVELLGLRACL-VQSTMDCGEGLPASWAVRTTDD 188
SG T + + M L + + G V
Sbjct: 37 SGTTTVLDTPTSANTSIPLRKEIMEGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAG 96
Query: 189 CIQSQKELYAKHHHAADGRIRIWFGIRQIMNATD------------RLLLETRDMAREFK 236
K + G+ + D L E + A +
Sbjct: 97 EEAKAGADLIKVIEDGGKTAKAIDGVLPALAPHDPPTVSHEGLKNEVELAEETEEAEKLG 156
Query: 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 296
+H+H AE E L L AH + ++ I LL A
Sbjct: 157 LLVHIHAAEASGE-------------------VNAILGGVDLLAHCLHLDDEAIELLKEA 197
Query: 297 GVKVSHCPASAMRML---------------------GFAPIKEMLHADICVSLGTDGAPS 335
G ++HCP S +L G A + + V LGTDGA
Sbjct: 198 GSGIAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADKGGVVGLGTDGAGL 257
Query: 336 NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 395
N + DP L LRMATIN AK++ D+ +GS+E
Sbjct: 258 NGKDFY---------------------LDPDGLSPIEALRMATINPAKALGLDDRVGSIE 296
Query: 396 AGKKADMVVVD 406
GK AD+VVVD
Sbjct: 297 VGKDADLVVVD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-17
Identities = 67/308 (21%), Positives = 106/308 (34%), Gaps = 40/308 (12%)
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
F++THVH D L + ++ ED Y TL L+ GVT
Sbjct: 1 FIDTHVH---------LDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTT 51
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMD--CGEGLPASWAVRTTDDCIQSQKELYAK 199
+ G KA A + + G G+P A D + L
Sbjct: 52 VVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRG 111
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259
A G +++ G +D L + AR+ + +H E+P
Sbjct: 112 LELGAVG-LKL-AGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELP-----------D 158
Query: 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR----MLGFAP 315
+ L + L ++ H ++ + LL AGV + CP S G
Sbjct: 159 PTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEA 218
Query: 316 IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375
++ +L I V+LGTDG P ++ + L + + L E LR
Sbjct: 219 LRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLR------------LGLSLEEALR 266
Query: 376 MATINGAK 383
+ATIN A+
Sbjct: 267 LATINPAR 274
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 87/473 (18%), Positives = 154/473 (32%), Gaps = 109/473 (23%)
Query: 17 SSSTMILHNAVIVTMDKE----SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIID 72
++ ++ + A++ T+ + +G V + +I A+G + ++ID
Sbjct: 1 TALDLLANIAMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPA----GAEVID 56
Query: 73 LQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTL--LC 130
+ + + PG ++ H H G SY L
Sbjct: 57 AKGKTVTPGLIDAHTHL------GFGGSR----------GGEFELREAGASYTEILAAGG 100
Query: 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCI 190
GI + G T + G KA L L+ GE T+
Sbjct: 101 GILPLDRGFTTARDGGL-------KATALPRLKRAGSAGVTT-GERKSGYGLDLETEGGH 152
Query: 191 --------QSQKELYAKHHHAADG--------RIRIWFGIRQIMNA-------------- 220
+S+ AA G R G R ++
Sbjct: 153 LRAAAGLKESRPVAVGSTPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFC 212
Query: 221 -----TDRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKIEFLQ 274
+ + A + + H + + + + +HGT LD E
Sbjct: 213 EGGQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRLGAKSAEHGT--LLDH-ETAA 269
Query: 275 NNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAP 334
LL+ LL R ++ L + P ++++ A + V++GTD P
Sbjct: 270 --LLAEKGAGTPVPV--LLPRTKFELRE--------LDYKPARKLIDAGVKVAIGTDHNP 317
Query: 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394
+ S+ EM LA + + E L+ ATIN AK++ + +GSL
Sbjct: 318 GTSHGSLALEMALAVRLG---------------MTPEEALKAATINAAKALGLADKVGSL 362
Query: 395 EAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 447
E GK AD+VV D D + + Y + V +V+ +G+ V +
Sbjct: 363 EPGKDADLVVWDG---------DPLADIPYFLGLNKVEAVIKDGKVVYERGSY 406
|
Length = 406 |
| >gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLG--FAPIKEMLHADICVSLG 329
F L H V+ + E+ + ++HCP S R+L +++ A I S+
Sbjct: 251 FKGLRTLFTHCVYASEEELEKIKSKNASITHCPFSN-RLLSNKALDLEKAKKAGINYSIA 309
Query: 330 TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 389
TDG SN +S++DE+ A+L + L A+ +L AT GAK++ +N
Sbjct: 310 TDGLSSNISLSLLDELR-AAL-------LTHANMPLLEL-AKILLLSATRYGAKALGLNN 360
Query: 390 DIGSLEAGKKADMVVVD 406
G ++ GK AD+ V +
Sbjct: 361 --GEIKEGKDADLSVFE 375
|
Length = 408 |
| >gnl|CDD|233688 TIGR02022, hutF, formiminoglutamate deiminase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 82/412 (19%), Positives = 145/412 (35%), Gaps = 62/412 (15%)
Query: 73 LQSQILLPGFVNTHVHTSQQLAKGIADDV-----DLMTWLHDRIWPYESNMTEEDSYIST 127
S LLPG N H H Q+ G+A+ TW + ++ + +T E
Sbjct: 43 RLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSFWTW-RELMYRFADRLTPEQLQAIA 101
Query: 128 LLCGIELIHSGVTCFAE--------AGGQH--VSEMA----KAVELLGLRACLVQ---ST 170
+E++ +G T E G + +EMA A G+ L+ +
Sbjct: 102 RQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPVFYAH 161
Query: 171 MDCGEGLPASWAVR----TTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 226
G G + R + + + L + AA + + A L
Sbjct: 162 SGFG-GAAPNPGQRRFIHDPERFARLVEVL--RRTLAAQPGAVLGLAPHSL-RAVTPEQL 217
Query: 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL------SA 280
A + + +H+HVAE E D G +E+L ++
Sbjct: 218 AAVLQASDRQAPVHIHVAEQQKEV----DDCLAWSG----RRPVEWLLDHGPVDARWCLV 269
Query: 281 HTVWVNHTEIGLLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNR 338
H + E LL+++G CP + L G P + A +G+D S+
Sbjct: 270 HATHLTDEETKLLAKSGAVAGLCPTTE-ANLGDGIFPAVDFAAAGGRFGIGSD---SHVL 325
Query: 339 MSIVDEM----YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394
+ + +E+ Y L ++ R V A G P + A + GA+++ G L
Sbjct: 326 IDVAEELRQLEYGQRLRDRARNVLAAG---PGPSVGRALYDAALLGGAQALGRA--TGGL 380
Query: 395 EAGKKADMVVVDPFSWPMVPVHDR--ITSLVYCMRTENVVSVMCNGQWVMKN 444
AG +AD + +D + + ++ V V G+WV+++
Sbjct: 381 RAGARADFLTLDGDHPRLAGALGDSLLDRWLFAGGKAAVRDVWVGGRWVVRD 432
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate [Energy metabolism, Amino acids and amines]. Length = 454 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 64.1 bits (155), Expect = 2e-11
Identities = 62/339 (18%), Positives = 113/339 (33%), Gaps = 42/339 (12%)
Query: 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDR------IWPYESNMTEEDSYI 125
D + +++LPG V+ HVH + + E +
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 126 STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRT 185
+ LL + + A + + + + +E G+ L L
Sbjct: 61 TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPL-------ASVLDGPGLEAL 113
Query: 186 TDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMN-ATDRLLLETRDMAREFKTGIHMHVA 244
+ ++ L H A G + G+ + A + E +A G + +
Sbjct: 114 LREAKKAGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVAEDLHLAEILDPGAGLGLH 173
Query: 245 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 304
I ++++ H V + + AGV P
Sbjct: 174 VIAAAADLLLEGLVAAHAG----------------GLAVVPLELLLRDAAAAGVAFKVLP 217
Query: 305 ASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 364
+R ++E+L A + V+LG+D AP + L+ + A
Sbjct: 218 PLRLRERDREALRELLAAGVPVALGSDHAPDSPAGP-------GDLLEAALFLAAL---- 266
Query: 365 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 403
A L E LR+AT+N A+ + +D+G LE GK+AD+V
Sbjct: 267 -AGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 309 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY-LASLIN-KGREVFANGTTDPA 366
R P + +L A + V+LG+D AP ++ D + + + + K G +
Sbjct: 388 RAKRSYPFRSLLDAGVPVALGSD-AP----VAPPDPLLGIWAAVTRKTPGGGVLGNPE-E 441
Query: 367 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 404
L E LR TI A ++ +++ GSLE GK AD VV
Sbjct: 442 RLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|238630 cd01305, archeal_chlorohydrolases, Predicted chlorohydrolases | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 63/323 (19%), Positives = 106/323 (32%), Gaps = 77/323 (23%)
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRI--WPYESNMTEEDSYISTLL--CGI 132
IL+P VN H H K + D + L D + P D LL
Sbjct: 1 ILIPALVNAHTHLGDSAIKEVGDGLPL-----DDLVAPP--------DGLKHRLLAQADD 47
Query: 133 ELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE-GLPASWAVRTTDDCIQ 191
+ + + G+ A D E G+ +R
Sbjct: 48 RELAEAMRKVLRDMRET-----------GIGAFA-----DFREGGVEGIELLRRALGK-- 89
Query: 192 SQKELYAKHHHAADGR----------IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 241
GR + + G+ + +A D L + ++ R +
Sbjct: 90 -----LPVPFEVILGRPTEPDDPEILLEVADGL-GLSSANDVDLEDILELLRRRGKLFAI 143
Query: 242 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301
H +E + +T +++ L+ +LL H + ++ L+ GV V
Sbjct: 144 HASE------------TRESVGMTDIERALDLEPDLL-VHGTHLTDEDLELVRENGVPVV 190
Query: 302 HCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 360
CP S + +G P+ E+L I V LGTD N + EM + ++ +
Sbjct: 191 LCPRSNLYFGVGIPPVAELLKLGIKVLLGTDNVMVNE-PDMWAEMEFLAKYSRLQ----- 244
Query: 361 GTTDPAALPAETVLRMATINGAK 383
L +LRMAT+N A+
Sbjct: 245 -----GYLSPLEILRMATVNAAE 262
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. Length = 263 |
| >gnl|CDD|236420 PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 33/218 (15%)
Query: 239 IHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHT-----EIG 291
+H+H+AE E + G V +L L + + A V+ T E
Sbjct: 231 VHIHIAEQTKEVDDCLAW----SGARPVEWL-----LDHAPVDARWCLVHATHLTDAETA 281
Query: 292 LLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEM---- 345
L+R+G CP + L G P + L A +G+D S+ + +V+E+
Sbjct: 282 RLARSGAVAGLCPTTE-ANLGDGIFPAVDYLAAGGRFGIGSD---SHVSIDLVEELRLLE 337
Query: 346 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 405
Y L ++ R V A + A GA+++ IG L G +AD+VV+
Sbjct: 338 YGQRLRDRRRNVLA---AAAQPSVGRRLFDAALAGGAQALGRA--IGGLAVGARADLVVL 392
Query: 406 DPFSWPM--VPVHDRITSLVYCMRTENVVSVMCNGQWV 441
D + + V+ V V G+WV
Sbjct: 393 DLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWV 430
|
Length = 456 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 290 IGLLSRAGVKVSHCPASA-MRMLGFAPIKEMLHADICVSLGTD---GAPSNNRMSIVDEM 345
I L+ AG P +A + P ++++ A + V+LGTD G+ + M +V M
Sbjct: 244 IAALAEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPGSSPTSSMPLV--M 301
Query: 346 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 405
+LA + + + E L ATIN A ++ +GSLE GK+AD+V++
Sbjct: 302 HLACRLMR--------------MTPEEALTAATINAAAALGLGETVGSLEVGKQADLVIL 347
Query: 406 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438
D S+ L Y V V+ NG
Sbjct: 348 DAPSY---------EHLAYRFGVNLVEYVIKNG 371
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 309 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY-LASLIN-KGREVFANGTTDPA 366
R P + +L A + ++ G+D AP + D + + + K G
Sbjct: 413 RASRSYPFRSLLKAGVPLAGGSD-AP----VEPYDPWLGIYAAVTRKTPGGRVLGPE--E 465
Query: 367 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406
L E LR T GA + + + GSLE GK AD V+D
Sbjct: 466 RLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLD 505
|
Length = 535 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
++ +ILHN I TMD+ V + RI A+G A++ A ++IDL+ +
Sbjct: 4 AADLILHNGRIYTMDEARPTAE--AVAIKDGRIVAVGSDAELKALAGP-ATEVIDLKGKF 60
Query: 78 LLPGFVNTHVH 88
+LPGFV+ H+H
Sbjct: 61 VLPGFVDAHLH 71
|
Length = 535 |
| >gnl|CDD|235969 PRK07213, PRK07213, chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA 280
+D L + K +H AE ++ V K + L + F + ++
Sbjct: 177 SDEELKFICKECKREKKIFSIHAAE--HKGSVEYSLEKYGMTEIERLINLGFKPDFIV-- 232
Query: 281 HTVWVNHTEIGLLSRAGVKVSHCP-ASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRM 339
H ++ ++ LL + V CP A+A +G P+ EML I + +GTD N M
Sbjct: 233 HATHPSNDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLEKGILLGIGTD-----NFM 287
Query: 340 ----SIVDEM-YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394
SI EM ++ L + + + +L+MATINGAK + N G +
Sbjct: 288 ANSPSIFREMEFIYKLYH---------------IEPKEILKMATINGAKILGLINV-GLI 331
Query: 395 EAGKKADMVVVDP 407
E G KAD + P
Sbjct: 332 EEGFKADFTFIKP 344
|
Length = 375 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 30/131 (22%)
Query: 313 FAPIKEMLHADICVSLGTD---G-APSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 368
+ P + + A + V+L TD G +P+ + + + M +A + + L
Sbjct: 298 YPPARLLRDAGVPVALATDFNPGSSPTES-LLLA--MNMACTLFR--------------L 340
Query: 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRT 428
E L TIN A+++ + GSLE GKKAD+V+ W L Y
Sbjct: 341 TPEEALAAVTINAARALGRQDTHGSLEVGKKADLVI-----WDA----PSPAELPYHFGV 391
Query: 429 ENVVSVMCNGQ 439
V +V+ NG+
Sbjct: 392 NPVETVVKNGE 402
|
Length = 406 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 18 SSTMILHNAVIVTMDKESR----VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDL 73
+ ++ NA + TMD + +G + + +I +G AD+ + A ++ID
Sbjct: 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLP---AAYAAEVIDA 58
Query: 74 QSQILLPGFVNTHVH 88
+++ PG ++ H H
Sbjct: 59 GGKLVTPGLIDCHTH 73
|
Length = 406 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 281 HTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN-- 337
H + I L+ AG P + + + P ++++ + V+L TD P ++
Sbjct: 239 HLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPGSSPT 298
Query: 338 -RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 396
M ++ M LA + K + E L AT+N A ++ + G+LEA
Sbjct: 299 LSMQLI--MSLACRLMK--------------MTPEEALHAATVNAAYALGLGEERGTLEA 342
Query: 397 GKKADMVVVDPFSWPMVPVH 416
G+ AD+V++ S+ +P H
Sbjct: 343 GRDADLVILSAPSYAEIPYH 362
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 22/118 (18%)
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD------------ 364
E+ I V G + D + + + K V ++D
Sbjct: 232 DELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSDHPVLNIRNLNLE 291
Query: 365 -----PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD-----PFSWPM 412
L E L+ TIN AK + ++ +GSLE GK AD+VV + P S P
Sbjct: 292 AAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNGDPLEPTSKPE 349
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100
+ + +I AIG ++ID + + +LPG ++ HVH ++ + +
Sbjct: 1 ILIEDGKIAAIGGDDLP-----DAEAEVIDAEGKYVLPGLIDMHVHLGEEPGRETLET 53
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA I+T +G V V +I AIG ++ + AD+IIDL+ Q L+P
Sbjct: 1 LIIKNARILTPGGL----EDGAVLVEDGKIVAIGPEDEL-----EEADEIIDLKGQYLVP 51
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEE--DSYISTLL-CGIELIHS 137
GF++ H+H G D M + + + + S++ T + E I
Sbjct: 52 GFIDIHIH-------GGG-GADFMDGTAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAK 103
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGL 162
+ AEA + E+LG+
Sbjct: 104 ALAAIAEAIAEGQG-----AEILGI 123
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406
PAE LR AT N A+ + +++G +EAGK AD++VVD
Sbjct: 296 PAE-ALRAATANAAELLGLSDELGVIEAGKLADLLVVD 332
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 42 GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V RI A+G A+ A ++IDL+ + +LPGF+++H H
Sbjct: 1 AVAVRDGRIVAVGSDAEAKA-LKGPATEVIDLKGKTVLPGFIDSHSH 46
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
I T D+ + +G V V D+I IG ++ +++ +I ++ +LLP F+N H
Sbjct: 9 IFTCDENFEILEDGAV-VFDDKILEIGDYENLKKKYPNA--KIQFFKNSVLLPAFINPHT 65
Query: 88 H 88
H
Sbjct: 66 H 66
|
Length = 408 |
| >gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 232 AREFKTGIHMHV-------AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 284
A + +H A + V+ D ++ H V D I+ L
Sbjct: 222 AHAAGLQVRVHASGDAAIDAVLNAYEAVLADLGRLIHAGVATTDTIDRAAE-LGLRADTQ 280
Query: 285 VNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTD--GAPSNNRMSIV 342
+ R G PIK +L+A + V+LG+D A + I
Sbjct: 281 PHFLAYDGYWDRS------RLGPERARGSLPIKLLLNAGVKVALGSDAPVATYDPWSGI- 333
Query: 343 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 402
A + + L E L + T A ++ ++ G+L GK AD+
Sbjct: 334 ---GAAVMRRTAEMLEGRVLKPDERLSLEEALALYTRGPAYALGLEDRKGTLAVGKDADL 390
Query: 403 VV 404
V+
Sbjct: 391 VI 392
|
Length = 392 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 7e-05
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
LP E L+ T N A+ L N G + GK AD++V+D
Sbjct: 323 LPLEDALKPLTSNVAR-FLKLNGKGEILPGKDADLLVLDD-------------------- 361
Query: 428 TENVVSVMCNGQWVMKNKKIL 448
+ V+ G+ ++K+ K L
Sbjct: 362 DLRIEQVIAKGKLMVKDGKAL 382
|
Length = 388 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
+++ NA +V ++ + + +I AIG++ + +IID + ++L
Sbjct: 2 DLLIKNARVVDPGEDEV----ADILIKDGKIAAIGKNLEP-----TSGAEIIDAKGLLVL 52
Query: 80 PGFVNTHVH 88
PG V+ HVH
Sbjct: 53 PGLVDLHVH 61
|
Length = 430 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
+ +RMA++N AK++ D+ +GS++ GK AD+VV+D
Sbjct: 325 ISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDL------------------ 366
Query: 428 TENVVSVMCNGQWV 441
NV + NG+ V
Sbjct: 367 --NVKATWINGEKV 378
|
Length = 380 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
L N I T V G V + +I+A+ + +IIDL+ +L+
Sbjct: 1 MYALKNGRIFT---GHGVLDGGAVVIEDGKIEAVVPAELP------ADAEIIDLKGALLV 51
Query: 80 PGFVNTHVH 88
PGF++ H+H
Sbjct: 52 PGFIDLHIH 60
|
Length = 380 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 407
P E +RMA++N AK + D+ GSL+ GK AD+VV+D
Sbjct: 324 CPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDD 363
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V + +I AIG++ + ++ID ++ PG V+ HVH
Sbjct: 22 VLIDDGKIAAIGENIEAE------GAEVIDATGLVVAPGLVDLHVH 61
|
Length = 423 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 35/159 (22%)
Query: 295 RAGVKVSHCPASAMRML-GFAP-IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN 352
R G+K+ SA + L P I E+ + L TD ++ +++E +L L+
Sbjct: 242 RLGMKIMIREGSAAKDLAALLPAITELGSRRVM--LCTDDRHPDD---LLEEGHLDRLV- 295
Query: 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 412
R G + +MATIN A+ +D+G + G++AD+V+++
Sbjct: 296 --RRAIEEG------VDPLDAYQMATINPAE-HYGLDDLGLIAPGRRADLVILED----- 341
Query: 413 VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 451
+R V SV+ G+ V ++ K L+
Sbjct: 342 -------------LRNFKVTSVLIKGRVVAEDGKALIKD 367
|
Length = 584 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+I NA IV E ++F G V + RI I S AD +ID +
Sbjct: 2 KRILI-KNARIVN---EGKIFE-GDVLIENGRIAKIASSISAKS-----ADTVIDAAGRY 51
Query: 78 LLPGFVNTHVH 88
LLPG ++ VH
Sbjct: 52 LLPGMIDDQVH 62
|
Length = 444 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
++ +VT + F+ + + RI A+G+ + ID +++LPG
Sbjct: 7 VIRGGTVVTA---TDTFQ-ADIGIRGGRIAALGEGLG-------PGAREIDATGRLVLPG 55
Query: 82 FVNTHVHTSQQLAKGI--ADD 100
V++H H Q GI ADD
Sbjct: 56 GVDSHCHIDQPSGDGIMMADD 76
|
Length = 477 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
+ + +I AI + +I + ++ID +IL+PGF++ HVH
Sbjct: 21 ILIAGGKIIAIADNINIPDIVPDI--EVIDASGKILVPGFIDQHVH 64
|
Length = 388 |
| >gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 18 SSTMILHNAVIVTMDKE-----SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIID 72
ST+I + +VT D E V R+ V V R+ +G +AD + AD+ +D
Sbjct: 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAAD-----APAADERVD 55
Query: 73 LQSQILLPGFVNTHVH 88
+ +LPGFV++H H
Sbjct: 56 AGGRAVLPGFVDSHSH 71
|
Length = 382 |
| >gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
MIL NA +V V +G + + RI AI A S + ID +
Sbjct: 1 MMEMILSNARLVL---PDEVV-DGSLLIEDGRIAAIDPGA------SALP-GAIDAEGDY 49
Query: 78 LLPGFVNTH 86
LLPG V+ H
Sbjct: 50 LLPGLVDLH 58
|
Length = 383 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
+ + RI A+G +A L A + ID + + PG V+ H H
Sbjct: 1 IAIRDGRIAAVGPAAS-LPAPGPAAAEEIDAGGRAVTPGLVDCHTH 45
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 36 RVFRN----GG----VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
+FRN GG + + RI AIG + + ++ D + LPG V+ H+
Sbjct: 4 LLFRNVRPAGGAAVDILIRDGRIAAIGPALA-----APPGAEVEDGGGALALPGLVDGHI 58
Query: 88 H 88
H
Sbjct: 59 H 59
|
Length = 391 |
| >gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 295 RAGVKVSHCPASAMRMLGFAPIKEMLHADI-CVSLGTDGAPSNNRMSIVDEMYLASLINK 353
R G+ V S + L + + + TD ++ ++ E +L ++
Sbjct: 174 RLGMYVMLREGSIAKNLEAL-LPAITEKNFRRFMFCTDDVHPDD---LLSEGHLDYIV-- 227
Query: 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406
R G +P E ++MATIN A+ +D+G++ G+ AD+V++D
Sbjct: 228 -RRAIEAG------IPPEDAIQMATINPAE-CYGLHDLGAIAPGRIADIVILD 272
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. Length = 422 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ ++ + E V V +I AIG DIL A +IID ++ P
Sbjct: 2 LIIRGGRVILPNGEREA----DVGVKGGKIAAIGP--DILGP----AAKIIDAGGLVVFP 51
Query: 81 GFVNTHVHTSQ 91
G V+THVH ++
Sbjct: 52 GVVDTHVHINE 62
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLV 423
+ L E +R T A V D G + G +AD+VV DP + + DR T
Sbjct: 331 ERKLLSLEEAVRKMTGLPA-RVFGLADRGRIAPGYRADIVVFDPDT-----LADRATFTR 384
Query: 424 YCMRTENVVSVMCNGQWVMKN 444
E + +V+ NG V+++
Sbjct: 385 PNQPAEGIEAVLVNGVPVVRD 405
|
Length = 415 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 100.0 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 100.0 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 100.0 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 100.0 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 100.0 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 100.0 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 100.0 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 100.0 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 100.0 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 100.0 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 100.0 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 100.0 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 100.0 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 100.0 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 100.0 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 100.0 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 100.0 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 100.0 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 100.0 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 100.0 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 100.0 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 100.0 | |
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 100.0 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 100.0 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 100.0 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 100.0 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 100.0 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| PRK06846 | 410 | putative deaminase; Validated | 100.0 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 100.0 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 100.0 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 100.0 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PLN02303 | 837 | urease | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 99.98 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 99.98 | |
| PRK08044 | 449 | allantoinase; Provisional | 99.98 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 99.97 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 99.97 | |
| PRK09060 | 444 | dihydroorotase; Validated | 99.97 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.97 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.97 | |
| PRK09059 | 429 | dihydroorotase; Validated | 99.97 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.97 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 99.97 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 99.97 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 99.97 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.96 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.96 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 99.96 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 99.96 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.96 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.96 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.96 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 99.96 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 99.96 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 99.96 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.95 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.95 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.95 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 99.94 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.94 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.94 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.94 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.94 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.93 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.92 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.91 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.9 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 99.87 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 99.87 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.86 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 99.86 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 99.85 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.85 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.85 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.78 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.78 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 99.71 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 99.7 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 99.7 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 99.69 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.54 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 99.51 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 99.18 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 99.06 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 98.97 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 98.96 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 98.94 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 98.9 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.85 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.76 | |
| PLN02599 | 364 | dihydroorotase | 98.7 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.7 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 98.68 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 98.63 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.38 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.37 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.37 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 98.27 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 98.24 | |
| PRK10425 | 258 | DNase TatD; Provisional | 98.23 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 98.21 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 98.17 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 98.05 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 98.01 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 97.48 | |
| PF07908 | 48 | D-aminoacyl_C: D-aminoacylase, C-terminal region; | 97.13 | |
| cd01319 | 496 | AMPD AMP deaminase (AMPD) catalyzes the hydrolytic | 96.66 | |
| TIGR01429 | 611 | AMP_deaminase AMP deaminase. This model describes | 96.64 | |
| PLN03055 | 602 | AMP deaminase; Provisional | 96.57 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 96.54 | |
| PLN02768 | 835 | AMP deaminase | 96.06 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 95.95 | |
| PTZ00310 | 1453 | AMP deaminase; Provisional | 95.56 | |
| KOG3020 | 296 | consensus TatD-related DNase [Replication, recombi | 93.24 | |
| PTZ00310 | 1453 | AMP deaminase; Provisional | 93.12 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 92.61 | |
| PRK07945 | 335 | hypothetical protein; Provisional | 92.42 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 91.91 | |
| COG1387 | 237 | HIS2 Histidinol phosphatase and related hydrolases | 90.89 | |
| PRK00912 | 237 | ribonuclease P protein component 3; Provisional | 89.6 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 88.24 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 87.84 | |
| TIGR01856 | 253 | hisJ_fam histidinol phosphate phosphatase HisJ fam | 86.7 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 85.76 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 83.58 | |
| PRK07328 | 269 | histidinol-phosphatase; Provisional | 83.43 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 81.68 |
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=440.66 Aligned_cols=426 Identities=30% Similarity=0.449 Sum_probs=360.2
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|+.|+++++...++++++|+|+||+|++|++..... ..+++++||++|++|+|||||+|+|+.++.+++..
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~---~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~ 77 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS---DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIG 77 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc---cCCCCeEEeCCCCEEccceeecccCccchhhhccC
Confidence 468999999999887667889999999999999999843211 11356899999999999999999999999999998
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc---cCHHHHHHHHHHhCCeEEeecccccCCC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGE 175 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (466)
.+.++.+|+....|+.+..+++++.+......+.+++++||||++|+.. .......++..+.|+|..++...++.+.
T Consensus 78 ~~~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~ 157 (435)
T PRK15493 78 DDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGT 157 (435)
T ss_pred CCCCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCC
Confidence 8889999999888999888888888888888999999999999999753 2345677888899999988776664321
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh
Q 012333 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 255 (466)
+ ......+......++++... .+.++..++++.++.++++.+.++.++|+++|+++++|+.+...+......
T Consensus 158 --~-----~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~ 229 (435)
T PRK15493 158 --K-----EDEKKAIEEAEKYVKRYYNE-SGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEA 229 (435)
T ss_pred --C-----ccHHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH
Confidence 1 12234455556666665432 367888899999999999999999999999999999999998776666655
Q ss_pred hcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
..+ ..+.+.+...++++.+.++.||.++++++++++++.|+.+++||.+++++ .+.+|++++++.|+++++|||+..
T Consensus 230 ~~g--~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~ 307 (435)
T PRK15493 230 QYG--KRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSGIANVKAMLEAGIKVGIATDSVA 307 (435)
T ss_pred HhC--CCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEEChHHHHHHhcCcccHHHHHHCCCeEEEccCccc
Confidence 544 45788999999999999999999999999999999999999999999876 788999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCC
Q 012333 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMV 413 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~ 413 (466)
.++..+++.+|+.+.+.++... ..+..++++++++++|.+||+++|++ ++|+|++|+.||||++|.+ .+...
T Consensus 308 ~~~~~d~~~~~~~a~~~~~~~~------~~~~~~~~~~~l~~aT~~gA~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~ 380 (435)
T PRK15493 308 SNNNLDMFEEMRIATLLQKGIH------QDATALPVETALTLATKGAAEVIGMK-QTGSLEVGKCADFITIDPSNKPHLQ 380 (435)
T ss_pred cCCCcCHHHHHHHHHHHHhhcc------CCCCcCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCCCCcC
Confidence 6667899999998877765321 12346999999999999999999995 4899999999999999975 56667
Q ss_pred CcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 414 PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
|..+++..+++......|..|||+|++|+++|+++.+|+++++.+..+..-
T Consensus 381 p~~d~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~d~~~~~~~~~~~~~ 431 (435)
T PRK15493 381 PADEVLSHLVYAASGKDISDVIINGKRVVWNGECKTLDEERIIFEASRYKR 431 (435)
T ss_pred CccChHHhEEEeCCCCCccEEEECCEEEEECCeECCCCHHHHHHHHHHHHH
Confidence 889999999999888899999999999999999999999999988776543
|
|
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-56 Score=430.64 Aligned_cols=412 Identities=29% Similarity=0.483 Sum_probs=347.7
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
.+|+|+.|+|+++....+++++|+|++|+|++|++..+.. .....++||++|++|+|||||+|+|+.++..++...+
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~---~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~ 78 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAF---LEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDD 78 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCccccc---ccccCeEEeCCCCEEccceeeeccCCCccccccccCC
Confidence 4799999999987777889999999999999999854321 1124689999999999999999999999999998888
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc---cCHHHHHHHHHHhCCeEEeecccccCCCCC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 177 (466)
.++.+|+....|+.+...++++.+........+++++||||+.++.. .......++..+.|++..+....+...
T Consensus 79 ~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~--- 155 (419)
T PRK06687 79 SNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSE--- 155 (419)
T ss_pred CCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCC---
Confidence 89999999999998888887777777777889999999999999753 235667788889999987765443211
Q ss_pred CcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhc
Q 012333 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257 (466)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 257 (466)
.......+++..+.++++...+...++..+.++.++.++++.+.++++.|+++|+++++|+.+...+........
T Consensus 156 -----~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~ 230 (419)
T PRK06687 156 -----TETTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRY 230 (419)
T ss_pred -----cccHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHH
Confidence 112344556667777776655556788889999999999999999999999999999999999887666555544
Q ss_pred CCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCC
Q 012333 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~ 336 (466)
+ ..+.+.++..++++.+.++.|+.++++++++++++.|+.+++||.++++. .+.+|++++++.|+++++|||+...+
T Consensus 231 g--~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~~ 308 (419)
T PRK06687 231 G--KRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLASGIAPIIQLQKAGVAVGIATDSVASN 308 (419)
T ss_pred C--cCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECcHHhhhhccCCCcHHHHHHCCCeEEEeCCCCCCC
Confidence 4 34778889999999999999999999999999999999999999999876 67899999999999999999987666
Q ss_pred CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCCc
Q 012333 337 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVPV 415 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~~ 415 (466)
+..+++..++.+...++... ..+..++++++++++|.+||+++|+++++|+|++|+.|||+++|.+ .+...|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~ 382 (419)
T PRK06687 309 NNLDMFEEGRTAALLQKMKS------GDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQ 382 (419)
T ss_pred CChhHHHHHHHHHHHhcccc------CCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCc
Confidence 67889999998776655321 1234589999999999999999999878999999999999999987 5777788
Q ss_pred CCcccceecccCCCCeeEEEEccEEEEECCeeeecc
Q 012333 416 HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 451 (466)
Q Consensus 416 ~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~ 451 (466)
.|++..+++.....+|..|||+|++|+++|++++++
T Consensus 383 ~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d 418 (419)
T PRK06687 383 ENMLSHLVYAVKSSDVDDVYIAGEQVVKQGQVLTVE 418 (419)
T ss_pred cCHHHHhheeCCCCCccEEEECCEEEEECCeEecCC
Confidence 899999999999999999999999999999998776
|
|
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-55 Score=426.33 Aligned_cols=429 Identities=32% Similarity=0.532 Sum_probs=350.0
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
.+.|++|+|+.|+++++...++++++|+|+||+|++|++..+....+ ++.++||++|++|+|||||+|+|+.++.+++
T Consensus 5 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~--~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g 82 (443)
T PRK09045 5 EPVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARY--AAAETVELPDHVLIPGLINAHTHAAMSLLRG 82 (443)
T ss_pred ccccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccC--CcceEEeCCCCEEecCEeccccChhhHhhhh
Confidence 35689999999999876567889999999999999999865432211 2568999999999999999999999988888
Q ss_pred ccCCCCchHhhhhcccccc-CCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCC
Q 012333 97 IADDVDLMTWLHDRIWPYE-SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (466)
...+.++.+|+....|+.+ ...++.+.+......+.+++++||||++++. .+.....++..+.|+|...+...++.
T Consensus 83 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~G~R~~~~~~~~~~-- 159 (443)
T PRK09045 83 LADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMY-FFPEAAAEAAHQAGMRAQIGMPVLDF-- 159 (443)
T ss_pred ccCCCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecc-ccHHHHHHHHHHcCCeEEEecccccC--
Confidence 7777888999988777654 3466777788888889999999999999975 34445577788899999877655532
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh
Q 012333 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 255 (466)
+..+ .....+.+....+..+.++ +...+++.+.++..+.++++.+.+++++|+++|+++++|+.+...+......
T Consensus 160 --~~~~-~~~~~~~l~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~ 234 (443)
T PRK09045 160 --PTAW-ASDADEYLAKGLELHDQWR--HHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLK 234 (443)
T ss_pred --CCcc-ccCHHHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHH
Confidence 1111 1233444554555555554 3467888888888889999999999999999999999999876655554444
Q ss_pred hcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
..+ ..+.+.+...+.++.+.++.|+.++++++++++++.|+.+++||.++++. .+..+++++++.|+++++|||+++
T Consensus 235 ~~g--~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~P~~~~~~~~~~~~~~~l~~~Gv~v~lGtD~~~ 312 (443)
T PRK09045 235 QHG--QRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHCPESNLKLASGFCPVAKLLQAGVNVALGTDGAA 312 (443)
T ss_pred HhC--CCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEECHHHHhhhccCCCcHHHHHHCCCeEEEecCCCC
Confidence 333 34678888899999999999999999999999999999999999988765 567899999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC
Q 012333 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~ 414 (466)
.+...+++..++.+....+... ....+++++++++++|.+||+++|+++++|+|++|+.|||||+|.+.+...|
T Consensus 313 ~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p 386 (443)
T PRK09045 313 SNNDLDLFGEMRTAALLAKAVA------GDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQP 386 (443)
T ss_pred CCCCccHHHHHHHHHHHHhhcc------CCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCC
Confidence 6566789999888765544221 1234599999999999999999999888999999999999999999887778
Q ss_pred cCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
.+++...+++.....+|..||++|++||++|+++++++++++++.++..
T Consensus 387 ~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 435 (443)
T PRK09045 387 VYDPVSQLVYAAGREQVSHVWVAGKQLLDDRELTTLDEAELLARARQWR 435 (443)
T ss_pred ccChHhHhhEeCCCCCccEEEECCEEEEECCcCCCCCHHHHHHHHHHHH
Confidence 8888787877777889999999999999999999999999999887654
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=425.55 Aligned_cols=430 Identities=35% Similarity=0.587 Sum_probs=351.6
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
|+++|+|+.|+++++. ..+++++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+.++..++..
T Consensus 1 ~~~~i~~~~vi~~~~~-~~~~~g~V~I~dg~I~~vg~~~~~----~-~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~ 74 (445)
T PRK07228 1 MTILIKNAGIVTMNAK-REIVDGDVLIEDDRIAAVGDRLDL----E-DYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIA 74 (445)
T ss_pred CeEEEEccEEEecCCC-cEecccEEEEECCEEEEecCCccc----C-cCCeEEeCCCCEEecCEEecccCCccccceecc
Confidence 4699999999997653 456899999999999999975432 1 256899999999999999999999988888877
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-CHHHHHHHHHHhCCeEEeecccccCCCCC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 177 (466)
.+.++.+|+....|+....+++++.+..+...+.+++.+||||+++++.. ......++....|+|.......++.+. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~-~ 153 (445)
T PRK07228 75 DDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGD-D 153 (445)
T ss_pred CCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccChHHHHHHHHHcCCeEEEecceecCCc-C
Confidence 77789999988888888888999999998899999999999999998743 345667788889999877766665431 1
Q ss_pred CcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhc
Q 012333 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257 (466)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 257 (466)
.+..........+.+....++.+.....+.+...+.++....++++.+.+++++++++|+++++|+.+...+........
T Consensus 154 ~p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~ 233 (445)
T PRK07228 154 VPEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEET 233 (445)
T ss_pred CCccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHh
Confidence 11222223445566666777666443334566556677777788999999999999999999999988766555544443
Q ss_pred CCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCC
Q 012333 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~ 336 (466)
+ ....+.++..+.++.+..+.|+.++++++++++++.|+.+++||.+++.. .+..|++++++.|+++++|||+++.+
T Consensus 234 g--~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~P~~~~~~~~~~~p~~~~~~~Gv~v~lGtD~~~~~ 311 (445)
T PRK07228 234 G--MRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPSSNLKLASGIAPVPDLLERGINVALGADGAPCN 311 (445)
T ss_pred C--CCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEChHHhhhcccccCcHHHHHHCCCeEEEcCCCCccC
Confidence 3 34678888899999999999999999999999999999999999998766 67889999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcC
Q 012333 337 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~ 416 (466)
...++|..++.+....+... ..+..++++++++++|.+||+++|+++++|+|++|+.|||||+|.+.+...|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~ 385 (445)
T PRK07228 312 NTLDPFTEMRQAALIQKVDR------LGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSH 385 (445)
T ss_pred CCccHHHHHHHHHHHhhhcc------CCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCc
Confidence 56789999887766554321 112359999999999999999999987889999999999999999987777777
Q ss_pred --CcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 417 --DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 417 --~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
+++..+++.....+|..||++|++||++|+++.++++.+.++..+..
T Consensus 386 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 434 (445)
T PRK07228 386 GVDVLSHLVYAAHGSDVETTMVDGKIVMEDGELTTIDADAVRREANRSI 434 (445)
T ss_pred ccCHHHHhheeCCCCCeeEEEECCEEEEECCeEccCCHHHHHHHHHHHH
Confidence 78787777777889999999999999999999999999998877654
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=419.68 Aligned_cols=422 Identities=26% Similarity=0.420 Sum_probs=348.5
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC-
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD- 99 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~- 99 (466)
++|+|++|+++++...+..+++|.|++|+|++|++..+....+ ++.++||++|++|+|||||+|+|++++.+++...
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~--~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~ 79 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKY--PDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMAN 79 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhcccc--CCCeEEeCCCCEEecceeeccccchhhhhcccccc
Confidence 5899999998765445667889999999999999743321111 2457999999999999999999999888888642
Q ss_pred ---CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc------CHHHHHHHHHHhCCeEEeeccc
Q 012333 100 ---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~------~~~~~~~~~~~~g~~~~~~~~~ 170 (466)
..++.+|+....|+.+..+++++.+......+.+++++||||++++... ......++..+.|+|..++...
T Consensus 80 ~~~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 159 (442)
T PRK07203 80 IPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYET 159 (442)
T ss_pred cCCCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccc
Confidence 2478899999899999999999999888888899999999999986421 1245677888999999876655
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
.+.. + .....+.+....+.++.++......+...++++.++.++++.++++.++|+++++++++|+.+...+.
T Consensus 160 ~d~~-~------~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~ 232 (442)
T PRK07203 160 SDRD-G------EKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDV 232 (442)
T ss_pred ccCC-c------chhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHH
Confidence 4422 0 11223445556666677665445578888999999999999999999999999999999999999888
Q ss_pred HHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEc
Q 012333 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLG 329 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~g 329 (466)
......++ ..+.+.++..++++++.++.||.++++++++++++.|+.+++||.++++. .+.+|+.+++++|+++++|
T Consensus 233 ~~~~~~~g--~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lG 310 (442)
T PRK07203 233 SDSHKKYG--KDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNPESNMGNAVGYNPVLEMIKNGILLGLG 310 (442)
T ss_pred HHHHHHcC--CCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECchhhhhcccCCCCHHHHHHCCCeEEEc
Confidence 87777655 45889999999999999999999999999999999999999999999887 6789999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC--CCCcccccccCCccCEEEEcC
Q 012333 330 TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL--WDNDIGSLEAGKKADMVVVDP 407 (466)
Q Consensus 330 sD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg--l~~~~G~i~~G~~ADlvv~d~ 407 (466)
||+.. .+++..++.+...++... ..+ .++++++++++|.+||+++| +.++.|+|++||.||||++|.
T Consensus 311 tD~~~----~d~~~~~~~a~~~~~~~~------~~~-~~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~ 379 (442)
T PRK07203 311 TDGYT----SDMFESYKVANFKHKHAG------GDP-NVGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDY 379 (442)
T ss_pred CCCCC----ccHHHHHHHHHHHhcccc------CCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcC
Confidence 99743 489999998877766421 111 24678999999999999999 456789999999999999999
Q ss_pred CCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 408 FSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
+.....+..+++..+++......|..|||+|++|+++|+++++|++++.++..+...
T Consensus 380 ~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~i~~~~~~~~~ 436 (442)
T PRK07203 380 NPPTPLNEDNINGHILFGMNGGSVDTTIVNGKVVMEDRKFLNFDEESIYARARKAAA 436 (442)
T ss_pred CCCeecCccccccceEeecCCCceEEEEECCEEEEECCcccccCHHHHHHHHHHHHH
Confidence 865555667888889988888999999999999999999999999999988776543
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=418.05 Aligned_cols=422 Identities=25% Similarity=0.405 Sum_probs=348.9
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++++....+.+++|.|++|+|++|++..+....+ .+.++||++|++|+|||||+|+|+.+...++...+
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~--~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d 78 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKY--PEATFIDAKGKLIMPGFINTHNHFYSTFARGMMAD 78 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccC--CCCeEEeCCCCEEecCeeecccchhhhhhcccccc
Confidence 4799999998776555778899999999999999854332111 24578999999999999999999999888887544
Q ss_pred ----CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc------CHHHHHHHHHHhCCeEEeeccc
Q 012333 101 ----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~------~~~~~~~~~~~~g~~~~~~~~~ 170 (466)
.++.+|+....|+.+..+++++.+......+.+++++||||++|+... ......++..+.|+|..++...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 158 (441)
T TIGR03314 79 IPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYET 158 (441)
T ss_pred CCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeee
Confidence 368999999999999999999999999888899999999999997421 1356778899999999887766
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
++...+ ....+.+....+++++++....+.++..++++.++.++++.++++.++|+++++++++|+.++..+.
T Consensus 159 ~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~ 231 (441)
T TIGR03314 159 SDRDGG-------KEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDV 231 (441)
T ss_pred ecCCCc-------ccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHH
Confidence 543211 1223344555566666665445678888999999999999999999999999999999999998887
Q ss_pred HHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEc
Q 012333 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLG 329 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~g 329 (466)
.......+ ..+.+.++..++++++.++.||.++++++++++++.|+.+++||.+++++ .+.+|+.+++++|+++++|
T Consensus 232 ~~~~~~~g--~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LG 309 (441)
T TIGR03314 232 EDSHHKYG--KDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNPESNMGNAVGYNPVLRMFKNGILLGLG 309 (441)
T ss_pred HHHHHHcC--CCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECHHHHhhhccCCCCHHHHHHCCCEEEEc
Confidence 77776555 45889999999999999999999999999999999999999999999987 6799999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC--CCCcccccccCCccCEEEEcC
Q 012333 330 TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL--WDNDIGSLEAGKKADMVVVDP 407 (466)
Q Consensus 330 sD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg--l~~~~G~i~~G~~ADlvv~d~ 407 (466)
||+.. .+++++|+.+...++.... .....+.++++++|.++|+.+| +..++|+|++|+.|||+++|.
T Consensus 310 tD~~~----~d~~~em~~a~~~~~~~~~-------~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~ 378 (441)
T TIGR03314 310 TDGYT----SDMFESLKFANFKHKDAGG-------DLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDY 378 (441)
T ss_pred CCCCC----cCHHHHHHHHHHHhccccC-------CCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcC
Confidence 99743 4899999998877664311 1113467899999999999996 455789999999999999999
Q ss_pred CCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 408 FSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
+.....|..++.+.+++.....+|..|||+|++|+++++++++|++++.++..+...
T Consensus 379 ~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~~~~~~~d~~~i~~~~~~~~~ 435 (441)
T TIGR03314 379 NAPTPLTADNINGHILFGMNGGSVDSTMVNGKVVMEDREFLHFDEAPIYARARKLAQ 435 (441)
T ss_pred CCCeeechhhccccceecCCCCeeEEEEECCEEEEECCcccccCHHHHHHHHHHHHH
Confidence 865555666777788887778899999999999999999999999999988776543
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=412.94 Aligned_cols=431 Identities=26% Similarity=0.344 Sum_probs=347.3
Q ss_pred cceEEEEccE-EEeecCCcceeec-eEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 18 SSTMILHNAV-IVTMDKESRVFRN-GGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 18 ~~~~lI~n~~-i~~~d~~~~~~~~-~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
|.|++|+|+. |++.++....+.+ ++|+|++|+|++|++. . +.+++++||++|++|+|||||+|+|++++.++
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~-----~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~r 74 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-T-----PLPGERVIDATDCVVYPGWVNTHHHLFQSLLK 74 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-C-----CCCCCeEEeCCCCEEecCEeecccCccccccc
Confidence 4689999996 7876654344444 4899999999999982 1 11367899999999999999999999999999
Q ss_pred ccc--CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc--------cCHHHHHHHHHHhCCeEE
Q 012333 96 GIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------QHVSEMAKAVELLGLRAC 165 (466)
Q Consensus 96 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~--------~~~~~~~~~~~~~g~~~~ 165 (466)
+.. .+.++.+|+....|+.+..+++++.+......+.+++.+||||++|+.. .......++..+.|+|..
T Consensus 75 g~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~ 154 (457)
T PRK12393 75 GVPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFV 154 (457)
T ss_pred ccccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEE
Confidence 874 3567889999988988888898899999999999999999999998742 123567888999999998
Q ss_pred eecccccCCCCCCc----ccccCChHHHHHHHHHHHHHhccCC-CCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCCcc
Q 012333 166 LVQSTMDCGEGLPA----SWAVRTTDDCIQSQKELYAKHHHAA-DGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGI 239 (466)
Q Consensus 166 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~~~~~~l~~~~~~a~~~~~~v 239 (466)
++....+...+.+. ..........++...++.+.++... ...+.+.+.++.+ +.++++.++++++.++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~ 234 (457)
T PRK12393 155 LCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRL 234 (457)
T ss_pred EEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 77654432222111 1122234455555566666665432 2346666777777 7889999999999999999999
Q ss_pred ceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHH
Q 012333 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKE 318 (466)
Q Consensus 240 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~ 318 (466)
++|+.+...+........+ ..+.+.++..+.++.+.++.|+.++++++++++++.|+.+++||.++++. .+.+++++
T Consensus 235 ~~H~~e~~~~~~~~~~~~g--~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~g~~~~~~ 312 (457)
T PRK12393 235 HSHLSETVDYVDFCREKYG--MTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCPQSNGRLGSGIAPALA 312 (457)
T ss_pred EEEeCCCHHHHHHHHHHhC--CCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECchhhhhhcccCCCHHH
Confidence 9999988766655554443 34778889999999999999999999999999999999999999999877 67899999
Q ss_pred HHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCC
Q 012333 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 398 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~ 398 (466)
+++.|+++++|||+...+...++|..++.+....+.. ..+..++++++++++|.+||+++|+++ +|+|++|+
T Consensus 313 ~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~T~~~A~~l~~~~-~G~l~~G~ 384 (457)
T PRK12393 313 MEAAGVPVSLGVDGAASNESADMLSEAHAAWLLHRAE-------GGADATTVEDVVHWGTAGGARVLGLDA-IGTLAVGQ 384 (457)
T ss_pred HHHCCCeEEEecCCcccCCCccHHHHHHHHHHHhhhc-------CCCCCCCHHHHHHHHhHHHHHHhCCCC-CCCcCCCC
Confidence 9999999999999876656789999999887765431 112359999999999999999999964 89999999
Q ss_pred ccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 399 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 399 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
.|||+|+|.+.....|..++...+++.....+|..||++|+++|++++++++|++++.++..+..-
T Consensus 385 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~~~~~d~~~i~~~~~~~~~ 450 (457)
T PRK12393 385 AADLAIYDLDDPRFFGLHDPAIAPVACGGPAPVKALLVNGRPVVENGAIPGLDLAELRHDARAAVR 450 (457)
T ss_pred cCCEEEEeCCCcccCCCCCchhhhhccCCCCCeeEEEECCEEEEECCccCCCCHHHHHHHHHHHHH
Confidence 999999999977767777777767666677899999999999999999999999999988776543
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=415.71 Aligned_cols=426 Identities=26% Similarity=0.359 Sum_probs=342.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.+++|+|+.|++.++....+.+++|+|++|+|++|++..+. ++.++||++|++|+|||||+|+|+.++..++.
T Consensus 1 ~~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~------~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~ 74 (449)
T PRK08204 1 MKRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA------PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGI 74 (449)
T ss_pred CCcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC------CCCeEEeCCCCEEecCEEeeeeccchhhhccc
Confidence 456899999999877655677889999999999999985431 25579999999999999999999998888887
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHHHHHHHHHHhCCeEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~ 172 (466)
..+.++.+|+....++....+++++.+........+++.+||||+++++.. ......++....|++..++....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~ 154 (449)
T PRK08204 75 GADWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPG 154 (449)
T ss_pred cCCCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccC
Confidence 777788999988888888888988888888888899999999999987532 234556778888999876555443
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHH
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 252 (466)
.+. .+................+++....+..+.....++.+..++++.+.++++.|+++|+++++|+.+....
T Consensus 155 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~--- 227 (449)
T PRK08204 155 PSP----YWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWG--- 227 (449)
T ss_pred CCC----CCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc---
Confidence 221 2222223334444555556665544455666566677777888999999999999999999999875432
Q ss_pred HHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccC
Q 012333 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTD 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD 331 (466)
......+.+...+.++.+..+.|+.++++++++++++.|+.+++||.+++.. .+..|++.++++|+++++|||
T Consensus 228 ------~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g~~~~~~~~~~~~Gv~v~lGtD 301 (449)
T PRK08204 228 ------ATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMGHGYPVTGRLLAHGVRPSLGVD 301 (449)
T ss_pred ------cCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhcCCCCcHHHHHhcCCceeeccc
Confidence 1233566777788888889999999999999999999999999999988765 567899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccccccc----C-CCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEc
Q 012333 332 GAPSNNRMSIVDEMYLASLINKGREVFA----N-GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d 406 (466)
+++. ...++|..++.+...++...... . .+....++++.++|+++|.++|+.+|+++++|+|++||.|||||+|
T Consensus 302 ~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld 380 (449)
T PRK08204 302 VVTS-TGGDMFTQMRFALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLID 380 (449)
T ss_pred cCCC-CCcCHHHHHHHHHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEc
Confidence 8643 35689999998876554321110 0 0112357999999999999999999998889999999999999999
Q ss_pred CCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 407 PFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
.+.+...|..+|+..+++.....+|..||++|++|++++++++++++++.++..+..
T Consensus 381 ~~~~~~~p~~dp~~~lv~~~~~~~v~~v~v~G~~v~~~~~~~~~d~~~~~~~~~~~~ 437 (449)
T PRK08204 381 ATDLNLAPVHDPVGAVVQSAHPGNVDSVMVAGRAVKRNGKLLGVDLERLRRLAAASR 437 (449)
T ss_pred CCCccccCCcChhhhheeccCCCCceEEEECCEEEEECCEeccCCHHHHHHHHHHHH
Confidence 998888899999988888888899999999999999999999999999998877654
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=408.04 Aligned_cols=420 Identities=36% Similarity=0.594 Sum_probs=349.5
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.+++|+|++|+++++ ..+.+++|.|++|+|++|++.... ++.++||++|++|+|||||+|+|+.++.+++.
T Consensus 1 ~~~~~~~~~~i~~~~~--~~~~~~~v~v~~g~I~~i~~~~~~------~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~ 72 (430)
T PRK06038 1 MADIIIKNAYVLTMDA--GDLKKGSVVIEDGTITEVSESTPG------DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGY 72 (430)
T ss_pred CCCEEEEccEEEECCC--CeeeccEEEEECCEEEEecCCCCC------CCCEEEeCCCCEEecCeeecccCcchhhhhhc
Confidence 3568999999998663 345778999999999999985321 34579999999999999999999999988888
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCC
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 177 (466)
..+.++.+|+....|+....+++++.+......+.+++++||||++|+.. ......++..+.|+|...+....+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~-~~~~~~~a~~~~GiR~~~~~~~~d~~--- 148 (430)
T PRK06038 73 ADDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYF-YMDEVAKAVEESGLRAALSYGMIDLG--- 148 (430)
T ss_pred cCCCCHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEcccc-CHHHHHHHHHHhCCeEEEEchhccCC---
Confidence 77789999998888887777888888888888999999999999999863 44566778889999987665443321
Q ss_pred CcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhc
Q 012333 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257 (466)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 257 (466)
........++...+.++.+.....+.+...++++.++.++++.+.++++.|+++|+++++|+.+............
T Consensus 149 ----~~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~ 224 (430)
T PRK06038 149 ----DDEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQY 224 (430)
T ss_pred ----CccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHh
Confidence 1112334455666667777654456778878889989999999999999999999999999999877666555544
Q ss_pred CCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCC
Q 012333 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~ 336 (466)
+. .+.+.++..++++.+.++.||.++++++++++++.|+.+++||.+++.. .+.+|++++++.|+++++|||+...+
T Consensus 225 G~--~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P~~n~~~~~~~~p~~~~~~~Gv~v~lGtD~~~~~ 302 (430)
T PRK06038 225 GM--CSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNMKLASGIAPVPKLLERGVNVSLGTDGCASN 302 (430)
T ss_pred CC--CHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEEChHHhhhhccCCCCHHHHHHCCCeEEEeCCCCccC
Confidence 43 4788889999999999999999999999999999999999999999876 67889999999999999999987655
Q ss_pred CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcC
Q 012333 337 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~ 416 (466)
...+++..++.+....+... ..+.++++.++++++|.+||+++|++ .|+|++|+.||||++|.+.....|..
T Consensus 303 ~~~d~~~~~~~a~~~~~~~~------~~~~~~~~~~al~~aT~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~ 374 (430)
T PRK06038 303 NNLDMFEEMKTAALLHKVNT------MDPTALPARQVLEMATVNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVR 374 (430)
T ss_pred CCcCHHHHHHHHHHHhhhcc------CCCCcCCHHHHHHHHhHHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCCC
Confidence 66789999998876655321 12346899999999999999999994 59999999999999999977677888
Q ss_pred CcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 417 DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 417 ~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
++...+++.....+|..|||+|+++|++|+++.+|+.++.++..+..
T Consensus 375 ~~~~~~v~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 421 (430)
T PRK06038 375 DVPSHLVYSASGSDVDTTIVDGRILMEDYKVLCMDEQDVMEDAKKAA 421 (430)
T ss_pred ChHHheeEeCCCCceeEEEECCEEEEECCeECCCCHHHHHHHHHHHH
Confidence 88888888777889999999999999999999999999998877654
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=406.69 Aligned_cols=410 Identities=32% Similarity=0.511 Sum_probs=336.0
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|+.|++.++. ..+.+++|+|++|+|++|++... .+.++||++|++|+|||||+|+|+.++..++..
T Consensus 1 m~~li~~~~v~~~~~~-~~~~~~~v~i~~g~I~~ig~~~~-------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~ 72 (418)
T PRK06380 1 MSILIKNAWIVTQNEK-REILQGNVYIEGNKIVYVGDVNE-------EADYIIDATGKVVMPGLINTHAHVGMTASKGLF 72 (418)
T ss_pred CeEEEEeeEEEECCCC-ceeeeeeEEEECCEEEEecCCCC-------CCCEEEECCCCEEccCEEeeccCCCccccCCcc
Confidence 3589999999987542 34568899999999999998532 245899999999999999999999999999888
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (466)
.+.++.+|+.. .|+....+++++.+......+.+++++||||++|+.. ......++..+.|+|.+++...++....
T Consensus 73 ~~~~l~~~~~~-~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~-~~~~~~~a~~~~G~r~~~~~~~~~~~~~-- 148 (418)
T PRK06380 73 DDVDLEEFLMK-TFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYY-SEDIIAKAAEELGIRAFLSWAVLDEEIT-- 148 (418)
T ss_pred cCCCHHHHHHH-HHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEcccc-ChHHHHHHHHHhCCeEEEecccccCCcc--
Confidence 88889999987 6888888899988888888999999999999999863 3466778889999999887666543210
Q ss_pred cccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcC
Q 012333 179 ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258 (466)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~ 258 (466)
. ............++++.. ...+...+++++++.++++.+++++++|+++|+++++|+.+...+........
T Consensus 149 ~-----~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~- 220 (418)
T PRK06380 149 T-----QKGDPLNNAENFIREHRN--EELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRT- 220 (418)
T ss_pred c-----ccchHHHHHHHHHHHhcC--CCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHh-
Confidence 0 011122334444555442 35688888889999999999999999999999999999998765544333333
Q ss_pred CCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-c-CCccHHHHHHcCCcEEEccCCCCCC
Q 012333 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L-GFAPIKEMLHADICVSLGTDGAPSN 336 (466)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~-~~~~~~~~~~~gi~~~~gsD~~~~~ 336 (466)
+..+.+.++.++.++.+.++.|+.++++++++++++.|+.+++||.++++. . +.+|++++++.|+++++|||....+
T Consensus 221 -g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~~g~~p~~~~~~~Gv~v~lGTD~~~~~ 299 (418)
T PRK06380 221 -GERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFKLGTGGSPPIPEMLDNGINVTIGTDSNGSN 299 (418)
T ss_pred -CCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECHHHHHhhccCCCCcHHHHHHCCCeEEEcCCCCcCC
Confidence 345788999999999999999999999999999999999999999999876 3 6899999999999999999987655
Q ss_pred CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC--
Q 012333 337 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP-- 414 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~-- 414 (466)
+..+++..++.+....+... ..+..++++++++++|.++|++||+ +.|+|++||.||||++|.+.....|
T Consensus 300 ~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~aT~~gA~~lg~--~~G~l~~G~~ADlvv~d~~~~~~~p~~ 371 (418)
T PRK06380 300 NSLDMFEAMKFSALSVKNER------WDASIIKAQEILDFATINAAKALEL--NAGSIEVGKLADLVILDARAPNMIPTR 371 (418)
T ss_pred CCcCHHHHHHHHHHHhhhcc------CCCCcCCHHHHHHHHHHHHHHHhCC--CCCccCCCccCCEEEEeCCCCccCCCC
Confidence 66789999988765443221 1222489999999999999999999 3799999999999999998666667
Q ss_pred cCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHH
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 457 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 457 (466)
..+|+..+++.....+|..|||+|++++++|+++++|+++++.
T Consensus 372 ~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~ 414 (418)
T PRK06380 372 KNNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNGFNPDEFID 414 (418)
T ss_pred ccChHHheeecCCCCceeEEEECCEEEEECCeECccCHHHHhh
Confidence 4678888988888899999999999999999999999998764
|
|
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=404.82 Aligned_cols=421 Identities=32% Similarity=0.532 Sum_probs=348.4
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|++|+++++ ....+++|.|+||+|++|++.... ++.++||+.|++|+|||||+|+|++++.+++..
T Consensus 1 ~~~~i~~~~i~~~~~--~~~~~~~i~i~~g~I~~v~~~~~~------~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~ 72 (424)
T PRK08393 1 MSILIKNGYVIYGEN--LKVIRADVLIEGNKIVEVKRNINK------PADTVIDASGSVVSPGFINAHTHSPMVLLRGLA 72 (424)
T ss_pred CeEEEECcEEEeCCC--CceecceEEEECCEEEEecCCCCC------CCCeEEeCCCCEEccCeeeeccCcchHhhhhcc
Confidence 468999999997653 344667999999999999874321 245799999999999999999999999888888
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (466)
.+.++.+|+....|+....+++++.+........+++++||||+.++. .......++....|++........+.. .
T Consensus 73 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~~~~~a~~~~G~r~~~~~~~~~~~---~ 148 (424)
T PRK08393 73 DDVPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMY-FHMEEVAKATLEVGLRGYLSYGMVDLG---D 148 (424)
T ss_pred CCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccc-cCHHHHHHHHHHhCCeEEEeceEecCC---C
Confidence 888999999988899887888888888888899999999999999976 345677888889999987765443321 1
Q ss_pred cccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcC
Q 012333 179 ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258 (466)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~ 258 (466)
+ ......++...+.++.++..+...+...++++.++.++++.++++++.++++|+++++|+.+...+........+
T Consensus 149 ~----~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g 224 (424)
T PRK08393 149 E----EKREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYG 224 (424)
T ss_pred c----cchHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC
Confidence 1 112333444445555555555566777778888888999999999999999999999999998877776666554
Q ss_pred CCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCC
Q 012333 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337 (466)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~ 337 (466)
..+...+...+.++.+.++.|+.++++++++++++.|+.+++||.++++. .+..|+++++++|+++++|||....+.
T Consensus 225 --~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD~~~~~~ 302 (424)
T PRK08393 225 --KSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGSGVMPLRKLLNAGVNVALGTDGAASNN 302 (424)
T ss_pred --cCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECHHHHHhhccCCCCHHHHHHCCCcEEEecCCCccCC
Confidence 35788889999999999999999999999999999999999999998876 678899999999999999999876555
Q ss_pred CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCC
Q 012333 338 RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD 417 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~ 417 (466)
..+++.+++.+....+... ..+..+++.++++++|.+||+++|++ .|+|++|++||||++|.+.....|..+
T Consensus 303 ~~d~~~~~~~a~~~~~~~~------~~~~~~~~~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~ 374 (424)
T PRK08393 303 NLDMLREMKLAALLHKVHN------LDPTIADAETVFRMATQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINN 374 (424)
T ss_pred chhHHHHHHHHHHHHhhcc------CCCCcCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCC
Confidence 6789999998765544221 11233789999999999999999994 599999999999999999777778888
Q ss_pred cccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhhc
Q 012333 418 RITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLMN 465 (466)
Q Consensus 418 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~~ 465 (466)
+...+++.....+|..|||+|+++|++|+++.++.+++.+++.+..-+
T Consensus 375 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~~~ 422 (424)
T PRK08393 375 PISHLVYSANGNDVETTIVDGKIVMLDGEVLTLDEEKILDKFLKVIEK 422 (424)
T ss_pred hHHHeeeeCCCCCeeEEEECCEEEEECCeECCCCHHHHHHHHHHHHHh
Confidence 888888888888999999999999999999999999999988876554
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=408.92 Aligned_cols=428 Identities=30% Similarity=0.485 Sum_probs=343.5
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc--c
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI--A 98 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~--~ 98 (466)
+++.|+.|+++++...++.+++|+|+||+|++|++..+.+ .++.++||++|++|+|||||+|+|+++...++. .
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~----~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~ 79 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALP----QPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAA 79 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCC----CCCCeEEeCCCCEEecceEeccccccchhccccccc
Confidence 3445578999887556788999999999999999865421 135689999999999999999999999888877 5
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-------CHHHHHHHHHHhCCeEEeecccc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLVQSTM 171 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~ 171 (466)
.+.++.+|+.. .|+....+++++.+......+.+++++||||+++++.. ......++..+.|+|...+...+
T Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 158 (451)
T PRK08203 80 QDAELFPWLTT-LYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSM 158 (451)
T ss_pred CCCcHHHHHHH-HhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEeccee
Confidence 66788899865 45666678888888888889999999999999997521 14566888899999998776554
Q ss_pred cCCC---CCCcccccCChHHHHHHHHHHHHHhccCCC-CCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCc
Q 012333 172 DCGE---GLPASWAVRTTDDCIQSQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 172 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
+... +.++........+.++...+.++++..... +.+++.++++.++..+++.+.++++.|+++|+++++|+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~ 238 (451)
T PRK08203 159 SLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETL 238 (451)
T ss_pred ecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCH
Confidence 3321 112222222344556666666666654332 567877888888899999999999999999999999998877
Q ss_pred chhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcE
Q 012333 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICV 326 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~ 326 (466)
.+........+ ..+.+.+...++++.+.++.|+.++++++++++++.|+.+++||.+++++ .+.++++.+++.|+++
T Consensus 239 ~~~~~~~~~~g--~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~~~~~l~~~~~~~~~~~~~Gv~v 316 (451)
T PRK08203 239 DEEAFCLERFG--MRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHCPCSNMRLASGIAPVRELRAAGVPV 316 (451)
T ss_pred HHHHHHHHHhC--CCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEECcHHhhhhccCCCCHHHHHHCCCeE
Confidence 76555554333 34788889999999999999999999999999999999999999998876 6788999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEc
Q 012333 327 SLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406 (466)
Q Consensus 327 ~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d 406 (466)
++|||++..+...+++.+++.+....+... ..+.+++.++++++|.+||+++|++ .+|+|++||.|||+|+|
T Consensus 317 ~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d 388 (451)
T PRK08203 317 GLGVDGSASNDGSNLIGEARQALLLQRLRY-------GPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFD 388 (451)
T ss_pred EEecCCCccCCCcCHHHHHHHHHHHhhccc-------CCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEc
Confidence 999998765556789999887766554221 1235999999999999999999996 68999999999999999
Q ss_pred CCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 407 PFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
.+.....|..+|+..+++.. ..+|..||++|++||++|+++++|++++.++..+...
T Consensus 389 ~~~~~~~~~~~p~~~l~~~~-~~~v~~v~v~G~~v~~~~~~~~~d~~~~~~~~~~~~~ 445 (451)
T PRK08203 389 LDELRFAGAHDPVAALVLCG-PPRADRVMVGGRWVVRDGQLTTLDLAALIARHRAAAR 445 (451)
T ss_pred CCccccCCccChHHHHHccC-CCCccEEEECCEEEEECCcccCCCHHHHHHHHHHHHH
Confidence 99766556677776665543 5789999999999999999999999999988876654
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=405.77 Aligned_cols=423 Identities=24% Similarity=0.346 Sum_probs=332.6
Q ss_pred eEEEEccEEEeecCCc-ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 20 TMILHNAVIVTMDKES-RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~-~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
.++|+|+.|++.++.. .++.+++|+|+||+|++|++... ....++||++|++|+|||||+|+|+.+.......
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~------~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~ 75 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD------GEVDRVIDAGNALVGPGFIDLDALSDLDTTILGL 75 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC------CCCCeEEeCCCCEEecCEEeeecccchhhhhccc
Confidence 5899999999877644 46789999999999999997432 1245799999999999999999998754332221
Q ss_pred CCCCchHhhhhcccccc-------CCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----------CHHHHHHHHHHhC
Q 012333 99 DDVDLMTWLHDRIWPYE-------SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----------HVSEMAKAVELLG 161 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----------~~~~~~~~~~~~g 161 (466)
. +..+|+.+..|+.. ..+++++.+......+.+++++||||++|++.. ......++....|
T Consensus 76 ~--~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~G 153 (488)
T PRK06151 76 D--NGPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLG 153 (488)
T ss_pred c--cchhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcC
Confidence 1 12266655555532 357888888898999999999999999986431 1345567778899
Q ss_pred CeEEeecccccCCCCC------CcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 012333 162 LRACLVQSTMDCGEGL------PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (466)
+|...+...+..+... .+.+......+.+.+..+.++++...+.+.++..+.++..+.++++.+.++++.|+++
T Consensus 154 iR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~ 233 (488)
T PRK06151 154 LRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAAREL 233 (488)
T ss_pred CeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHC
Confidence 9987776544322111 0111111233445666777777776666778888888888889999999999999999
Q ss_pred CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh---------hhHHHHHhcCCeEEECccc
Q 012333 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH---------TEIGLLSRAGVKVSHCPAS 306 (466)
Q Consensus 236 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~---------~~~~~~~~~g~~~~~~p~~ 306 (466)
|+++++|+.+...+........+ ....+.+...+.++.+.+++|+.++++ ++++++++.|+.+++||.+
T Consensus 234 g~~v~~H~~e~~~~~~~~~~~~g--~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v~~~P~~ 311 (488)
T PRK06151 234 GCPVRLHCAQGVLEVETVRRLHG--TTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVSIVHCPLV 311 (488)
T ss_pred CCcEEEEECCchHHHHHHHHHcC--CCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCEEEECchh
Confidence 99999999887665555444333 347788888898899999999999999 9999999999999999998
Q ss_pred hhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 307 AMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 307 ~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
+.+. .+.++++.+++.|+++++|||..+ .+++..++.+....+... .....++++++++++|.+||+++
T Consensus 312 ~~~~g~~~~p~~~l~~~Gv~v~lGtD~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~al~~aT~~~A~~l 381 (488)
T PRK06151 312 SARHGSALNSFDRYREAGINLALGTDTFP----PDMVMNMRVGLILGRVVE------GDLDAASAADLFDAATLGGARAL 381 (488)
T ss_pred hhhhccccccHHHHHHCCCcEEEECCCCC----ccHHHHHHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHHHh
Confidence 8765 677899999999999999999743 378888887765543221 11234899999999999999999
Q ss_pred CCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 386 LWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 386 gl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
|+++ +|+|++|+.|||+|+|.+.+...|..+++..+++.....+|..||++|++||++|+++.+++++++....+..
T Consensus 382 g~~~-~G~I~~G~~ADlvvld~~~~~~~~~~d~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 458 (488)
T PRK06151 382 GRDD-LGRLAPGAKADIVVFDLDGLHMGPVFDPIRTLVTGGSGRDVRAVFVDGRVVMEDGRLPGVDLAALRAQAQQQF 458 (488)
T ss_pred CCCC-CcccCCCCcCCEEEEeCCccccCCccCHHHHHHhhCCCCCccEEEECCEEEEECCeecCCCHHHHHHHHHHHH
Confidence 9965 7999999999999999998877788888888888887789999999999999999999999999998877554
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=388.39 Aligned_cols=410 Identities=41% Similarity=0.661 Sum_probs=322.0
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++++ .+.+.+++|+|+||||++|++..+.+ .+ ++.++||++|++|+|||||+|+|+.++..++....
T Consensus 1 ~~i~~~~v~~~~~-~~~~~~~~v~i~~g~I~~ig~~~~~~--~~-~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~ 76 (411)
T cd01298 1 ILIRNGTIVTTDP-RRVLEDGDVLVEDGRIVAVGPALPLP--AY-PADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADD 76 (411)
T ss_pred CeEEeeEEEEeCC-cceeecceEEEECCEEEEecCccccc--cC-CcCeEEeCCCCEEccCccccccchhhHHhhcccCC
Confidence 4899999998765 56778999999999999999854321 11 25689999999999999999999988777666666
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCCcc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (466)
.++.+|+....+......+.++.+......+.+++.+||||+++++........++....|++.......+.....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~---- 152 (411)
T cd01298 77 LPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYPDAVAEAAEELGIRAVLGRGIMDLGTE---- 152 (411)
T ss_pred CCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccchHHHHHHHHHhCCeEEEEcceecCCCc----
Confidence 6789999988887766677777777777788889999999999987543345566677788888766555432211
Q ss_pred cccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCC
Q 012333 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~ 260 (466)
. ........++..+.++++...+...+++.++++.....+++.+.++++.|+++|+++.+|+.+............+.
T Consensus 153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~- 230 (411)
T cd01298 153 D-VEETEEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGK- 230 (411)
T ss_pred c-cccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC-
Confidence 1 12334455666666766655455677887887777778899999999999999999999998776555444433332
Q ss_pred CchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCC
Q 012333 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRM 339 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~ 339 (466)
...+.+...+..+.+..+.|+.++++++++++++.|+.+++||.++... ...+++++++++|+++++|||+++.....
T Consensus 231 -~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~p~~~~~~~~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~ 309 (411)
T cd01298 231 -RPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPASNMKLASGIAPVPEMLEAGVNVGLGTDGAASNNNL 309 (411)
T ss_pred -CHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEChHHhhhhhhCCCCHHHHHHCCCcEEEeCCCCccCCCc
Confidence 2555566667777788999999999999999999999999999988765 46789999999999999999997655556
Q ss_pred CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcc
Q 012333 340 SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRI 419 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~ 419 (466)
+++.+++.+....+.. ...+++++++++++++|.|||+++|++ ++|+|++|+.|||||+|.+.+...+.+++.
T Consensus 310 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~ 382 (411)
T cd01298 310 DMFEEMRLAALLQKLA------HGDPTALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPI 382 (411)
T ss_pred CHHHHHHHHHHHhccc------cCCCCcCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchh
Confidence 8888888765554321 112245999999999999999999997 789999999999999999966555667776
Q ss_pred cceecccCCCCeeEEEEccEEEEECCeee
Q 012333 420 TSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 420 ~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
+.+.+.....+|..||++|++||++|+++
T Consensus 383 ~~~~~~~~~~~v~~v~~~G~~v~~~~~~~ 411 (411)
T cd01298 383 SHLVYSANGGDVDTVIVNGRVVMEDGELL 411 (411)
T ss_pred hHheEecCCCCeeEEEECCEEEEECCEeC
Confidence 76666666789999999999999999864
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=387.96 Aligned_cols=409 Identities=23% Similarity=0.311 Sum_probs=325.2
Q ss_pred ceEEEEccEEEe-ec-------CCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 19 STMILHNAVIVT-MD-------KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 19 ~~~lI~n~~i~~-~d-------~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
...+|++..|+. .. ....++++++|+|++|+|++|++..+....++. ..++||++|++|+|||||+|+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~I~~g~I~~Vg~~~~~~~~~~~-~~~viD~~g~lv~PGlVn~H~H~~ 80 (433)
T PRK09228 2 TTKAYRGRLLHFTADPAEVDDEDALRYIEDGLLLVEDGRIVAAGPYAELRAQLPA-DAEVTDYRGKLILPGFIDTHIHYP 80 (433)
T ss_pred ceEEEEEEEEccCCCccccCCCCcEEEECCeEEEEECCEEEEEcChHHhhhhcCC-CCeEEeCCCCEEecceeccccccc
Confidence 346777666662 22 234577899999999999999986543322221 358999999999999999999998
Q ss_pred ccccccccCCCCchHhhhhccccccCCC-ChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHHHHhCCeEEe
Q 012333 91 QQLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACL 166 (466)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~ 166 (466)
++.+++. .+.++.+|+....|+.+..+ ++++.+......+.+++++||||+++++... .....++..+.|+|...
T Consensus 81 ~~~~~g~-~~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~ 159 (433)
T PRK09228 81 QTDMIAS-YGEQLLDWLNTYTFPEERRFADPAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIA 159 (433)
T ss_pred chhhccC-CchHHHHHHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEe
Confidence 8877764 34468899988788876543 5556666777788999999999999975433 35667778889999988
Q ss_pred ecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc-CCccceeccC
Q 012333 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAE 245 (466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~v~~H~~~ 245 (466)
+...++.. .+. .........+....+.++++... ..+.+.+.++..+.++++.++++.++|+++ ++++++|+.+
T Consensus 160 ~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E 234 (433)
T PRK09228 160 GKVLMDRN--APD-GLRDTAESGYDDSKALIERWHGK--GRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSE 234 (433)
T ss_pred eeeeecCC--CCc-ccccCHHHHHHHHHHHHHHHhCC--CCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecC
Confidence 76665431 111 11122344455556666666543 467788889999999999999999999998 9999999999
Q ss_pred CcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCC
Q 012333 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADI 324 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi 324 (466)
+..+........+......+.++..++++.+.++.|+.++++++++++++.|+.+++||.+++++ .+.+++..+++.|+
T Consensus 235 ~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~~~~~~~~~~Gv 314 (433)
T PRK09228 235 NLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNLFLGSGLFDLKRADAAGV 314 (433)
T ss_pred ChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeEEECCccHHhhcCCCcCHHHHHHCCC
Confidence 98887777776665555788999999999999999999999999999999999999999999876 67899999999999
Q ss_pred cEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEE
Q 012333 325 CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 404 (466)
Q Consensus 325 ~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv 404 (466)
++++|||... ++..+++..|+.+....+. ....++++++|+++|.+||+++|+++++|+|++||.||||+
T Consensus 315 ~v~lGtD~~~-~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv 384 (433)
T PRK09228 315 RVGLGTDVGG-GTSFSMLQTMNEAYKVQQL---------QGYRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVV 384 (433)
T ss_pred eEEEecCCCC-CCCCCHHHHHHHHHHHhhc---------ccCCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEEE
Confidence 9999999854 3457899999887766542 12358999999999999999999987789999999999999
Q ss_pred EcCCC-CCCC-------CcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 405 VDPFS-WPMV-------PVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 405 ~d~~~-~~~~-------~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
+|.+. +... +..|++..+++......|+.|||+|++|+++
T Consensus 385 ~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 385 LDPAATPLLALRTARAESLEELLFALMTLGDDRAVAETYVAGRPVYRR 432 (433)
T ss_pred EcCCCCccccchhcccCCHHHHHHHHhhcCCccceeEEEECCEEeccC
Confidence 99884 3322 2367889999999999999999999999874
|
|
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=385.92 Aligned_cols=402 Identities=25% Similarity=0.358 Sum_probs=322.5
Q ss_pred EEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhh
Q 012333 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWL 107 (466)
Q Consensus 28 i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 107 (466)
+.++|....++++++|+|++|+|++||+..+.....+ +++++||++|++|+|||||+|+|++++.+++...+.++.+|+
T Consensus 14 ~~~~d~~~~~~~~g~V~v~~g~I~~vG~~~~~~~~~~-~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl 92 (429)
T cd01303 14 LELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAK-PGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWL 92 (429)
T ss_pred ccccCCcEEEECCeEEEEECCEEEEeCchhhhhhhcC-CCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHH
Confidence 3456776778899999999999999998654321112 256899999999999999999999999989887888999999
Q ss_pred hhccccccCC-CChhHHHHHHHHHHHHHHhcCceeeeecCcc---CHHHHHHHHHHhCCeEEeecccccCCCCCCccccc
Q 012333 108 HDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAV 183 (466)
Q Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
....|+.+.. .+.++.+......+.+++++||||+++++.. ......++..+.|+|..++...++... + ....
T Consensus 93 ~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~--~-~~~~ 169 (429)
T cd01303 93 ETYTFPEEAKFADPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNA--P-EYYR 169 (429)
T ss_pred HhhhhHHHHhcCCHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCC--C-cccc
Confidence 8888887665 3555666667778889999999999997643 345667788899999988766554321 1 1111
Q ss_pred CChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC-CccceeccCCcchhHHHHhhcCCCCc
Q 012333 184 RTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHG 262 (466)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~-~~v~~H~~~~~~~~~~~~~~~~~~~~ 262 (466)
......+....++++.+... .+.+...++++..+.++++.+++++++|++++ +++++|+.+...+........+....
T Consensus 170 ~~~~~~~~~~~~~i~~~~~~-~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~ 248 (429)
T cd01303 170 DTAESSYRDTKRLIERWHGK-SGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARD 248 (429)
T ss_pred cCHHHHHHHHHHHHHHHhCc-CCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCC
Confidence 22334455566666666543 35677778889999999999999999999999 99999999887776666665553356
Q ss_pred hHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCH
Q 012333 263 TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSI 341 (466)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~ 341 (466)
+.+.++..++++.+.++.||.++++++++++++.|+.+++||.+++.+ .+..+++++++.|+++++|||+.+. ...++
T Consensus 249 p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g~~~~~~~~~~Gv~v~lGtD~~~~-~~~d~ 327 (429)
T cd01303 249 YLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDAGIKVGLGTDVGGG-TSFSM 327 (429)
T ss_pred HHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEEECccchhhhccCCCCHHHHHHCCCeEEEeccCCCC-CCccH
Confidence 889999999999999999999999999999999999999999999876 6788999999999999999998644 45689
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC-Cc-----
Q 012333 342 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV-PV----- 415 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~-~~----- 415 (466)
++.++.+....+.... ....+.+++++++++++|.+||+++|+++++|+|++||.|||||+|.+.+... |.
T Consensus 328 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~~~~~ 404 (429)
T cd01303 328 LDTLRQAYKVSRLLGY---ELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRVE 404 (429)
T ss_pred HHHHHHHHHHHHhhcc---ccCCcCCCCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCcccccccccccc
Confidence 9999987665442210 01134568999999999999999999988899999999999999999965333 53
Q ss_pred --CCcccceecccCCCCeeEEEEcc
Q 012333 416 --HDRITSLVYCMRTENVVSVMCNG 438 (466)
Q Consensus 416 --~~~~~~~~~~~~~~~v~~v~v~G 438 (466)
.||+..++|......|+.|||+|
T Consensus 405 ~~~d~~~~lV~~~~~~~V~~v~V~G 429 (429)
T cd01303 405 SLEEALFKFLYLGDDRNIREVYVAG 429 (429)
T ss_pred chhhHHHHHeeeCCCCCeeEEEeCC
Confidence 68999999999999999999998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=384.83 Aligned_cols=418 Identities=19% Similarity=0.235 Sum_probs=319.6
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEEC-CEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQ-DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~-G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
..++++++.+. ++ +..+++|+|++ |+|++|++.... + .++.+|++|+|||||+|+|+.++.+++.
T Consensus 3 ~~~~~~~~~~~--~~---~~~~~~v~i~~~grI~~vg~~~~~------~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~ 68 (456)
T PRK09229 3 TTLFAERALLP--DG---WARNVRLTVDADGRIAAVEPGAAP------A---GAERLAGPVLPGMPNLHSHAFQRAMAGL 68 (456)
T ss_pred hhHHHHHhhCC--Cc---cccCcEEEEecCCeEEEecCCCCC------c---cccccCcEEccCcccccccHhhHhhcCc
Confidence 34556666663 33 56788999999 999999985321 1 2345899999999999999999999987
Q ss_pred cCC-----CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------------CHHHHHHHHH
Q 012333 98 ADD-----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVE 158 (466)
Q Consensus 98 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------------~~~~~~~~~~ 158 (466)
..+ .++.+|+. ..|+....+++++.+......+.+++++||||+.++... ......++..
T Consensus 69 ~~~~~~~~~~l~~w~~-~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 147 (456)
T PRK09229 69 TEVRGPPQDSFWSWRE-LMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAAR 147 (456)
T ss_pred ccccCCCCCChHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHH
Confidence 653 45678975 457777788999999999999999999999999886421 1256788889
Q ss_pred HhCCeEEeecccccCC-C-CCCccc----ccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHH
Q 012333 159 LLGLRACLVQSTMDCG-E-GLPASW----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (466)
Q Consensus 159 ~~g~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a 232 (466)
+.|+|..++...++.. . +.++.. ............++..+.++. .+.+.+.++++.++.++++.+++++++|
T Consensus 148 e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~~A 225 (456)
T PRK09229 148 AAGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAA--LPGARLGLAPHSLRAVTPDQLAAVLALA 225 (456)
T ss_pred HcCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcC--CCceEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 9999987766555422 1 112110 011122222222233333322 3568888889988899999999999999
Q ss_pred HHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-c
Q 012333 233 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L 311 (466)
Q Consensus 233 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~ 311 (466)
++|+++++|+.+...+........+ ..+.+.+...+.++.+.++.||.++++++++++++.|+.+++||.+++++ .
T Consensus 226 -~~g~~i~~H~~e~~~e~~~~~~~~g--~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~ 302 (456)
T PRK09229 226 -APDGPVHIHIAEQTKEVDDCLAWSG--ARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCPTTEANLGD 302 (456)
T ss_pred -cCCCceEEEeCCCHHHHHHHHHHcC--CCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECchhhhhhcC
Confidence 9999999999887766555555443 44778888899999999999999999999999999999999999998876 6
Q ss_pred CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCC-CCCCCCHHHHHHHHhHHHHHHcCCCCc
Q 012333 312 GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT-DPAALPAETVLRMATINGAKSVLWDND 390 (466)
Q Consensus 312 ~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ls~~~al~~~T~~~A~~lgl~~~ 390 (466)
+.+|+++++++|+++++|||++. ..+++..++.+...++.......... ..+.+++.++|+++|.++|+++|+ .
T Consensus 303 g~~p~~~l~~~Gv~v~lGtD~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~--~ 377 (456)
T PRK09229 303 GIFPAVDYLAAGGRFGIGSDSHV---SIDLVEELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR--A 377 (456)
T ss_pred CCCCHHHHHHCCCeEEEecCCCC---CCCHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC--C
Confidence 78999999999999999999754 35899999988765543211111111 114689999999999999999999 4
Q ss_pred ccccccCCccCEEEEcCCCCCCCCc--CCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 391 IGSLEAGKKADMVVVDPFSWPMVPV--HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 391 ~G~i~~G~~ADlvv~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
+|+|++||.|||||+|.+.+...|. +++...+++.....+|..|||+|++||++|+++ +.+++.+++++..
T Consensus 378 ~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~--d~~~i~~~~~~~~ 450 (456)
T PRK09229 378 IGGLAVGARADLVVLDLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWVVRDGRHR--LREAIAAAFRAAL 450 (456)
T ss_pred cCCcCCCCccCEEEEeCCCccccCCChhhHHHHHhhcCCCCCeeEEEECCEEEEECCccC--CHHHHHHHHHHHH
Confidence 8999999999999999986544443 678888888888899999999999999999965 7788887776543
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=371.04 Aligned_cols=385 Identities=24% Similarity=0.380 Sum_probs=308.9
Q ss_pred eeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccC
Q 012333 37 VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES 116 (466)
Q Consensus 37 ~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (466)
++.+++|+|+||+|++|++..+....++ .+.++||++|++|+|||||+|+|+++...++ ....++.+|+....|+.+.
T Consensus 3 ~~~~~~V~V~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g-~~~~~~~~~~~~~~~~~~~ 80 (401)
T TIGR02967 3 YFEDGLLVVENGRIVAVGDYAELKETLP-AGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA-SYGEQLLEWLEKYTFPTEA 80 (401)
T ss_pred EEeceEEEEECCEEEEecCcchhhhccC-CCCeEEeCCCCEEecceeecccCchhhhhcc-cCCchHHHHHhhCcCcccc
Confidence 3567899999999999998654322222 2568999999999999999999998887777 4566788999877676665
Q ss_pred CC-ChhHHHHHHHHHHHHHHhcCceeeeecCccCH---HHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHH
Q 012333 117 NM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQS 192 (466)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
.+ +++..+......+.+++++||||+++++..+. ....++..+.|+|...+...++.. .+. .........++.
T Consensus 81 ~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~--~~~-~~~~~~~~~~~~ 157 (401)
T TIGR02967 81 RFADPDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRN--APD-YLRDTAESSYDE 157 (401)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCC--CCc-ccccCHHHHHHH
Confidence 53 55566666777888999999999999875442 456778889999987766655421 121 112223444555
Q ss_pred HHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc-CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhc
Q 012333 193 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE 271 (466)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (466)
..+.++++... +.++..+.++..+.++++.+++++++|+++ |+++++|+.+...+........+......+.++..+
T Consensus 158 ~~~~i~~~~~~--g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g 235 (401)
T TIGR02967 158 SKALIERWHGK--GRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYG 235 (401)
T ss_pred HHHHHHHHhCc--CCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCC
Confidence 66666665542 467777888888899999999999999999 999999999888777777766665555688999999
Q ss_pred cCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHH
Q 012333 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASL 350 (466)
Q Consensus 272 ~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~ 350 (466)
+++.+.++.|+.++++++++++++.|+.+++||.++++. .+.++++.++++|+++++|||+... ...++++.++.+..
T Consensus 236 ~lg~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGtD~~~~-~~~~~~~~~~~~~~ 314 (401)
T TIGR02967 236 LLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGSGLFNLKKALEHGVRVGLGTDVGGG-TSFSMLQTLREAYK 314 (401)
T ss_pred CCCCCeEEEecccCCHHHHHHHHHcCCeEEEChHHHHHhccCCCCHHHHHHCCCeEEEecCCCCC-CCcCHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 6788999999999999999998643 45689999888766
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC--------cCCcccce
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP--------VHDRITSL 422 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~--------~~~~~~~~ 422 (466)
..+.. ..++++.++++++|.+||+.+|+++++|+|++|+.|||+++|.+.....| ..||...+
T Consensus 315 ~~~~~---------~~~~~~~~~l~~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~~~~~~ 385 (401)
T TIGR02967 315 VSQLQ---------GARLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTLEDKLFKL 385 (401)
T ss_pred Hhhhc---------CCCCCHHHHHHHHHHHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccccccccchhhHHHHh
Confidence 54422 13589999999999999999999878999999999999999998655443 46899999
Q ss_pred ecccCCCCeeEEEEcc
Q 012333 423 VYCMRTENVVSVMCNG 438 (466)
Q Consensus 423 ~~~~~~~~v~~v~v~G 438 (466)
+|......|..|||+|
T Consensus 386 v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 386 MYLGDDRNVAETYVAG 401 (401)
T ss_pred eeecCccceeEEEeCC
Confidence 9999999999999998
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=372.89 Aligned_cols=414 Identities=18% Similarity=0.238 Sum_probs=315.4
Q ss_pred EEccEEEeecCCcceeeceEEEEE-CCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC--
Q 012333 23 LHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-- 99 (466)
Q Consensus 23 I~n~~i~~~d~~~~~~~~~~v~I~-~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~-- 99 (466)
++|+.+- ++ +..+.+|+|+ ||+|++|++.... + +. .+..|++|+|||||+|+|++++.+++...
T Consensus 6 ~~~~~~~--~~---~~~~~~i~I~~~g~I~~vg~~~~~----~-~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~ 72 (455)
T TIGR02022 6 AERALLP--DG---WAEGVRIAVAADGRILAIETGVPA----A-PG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVA 72 (455)
T ss_pred HHhccCC--Cc---cccCceEEEecCCEEEEecCCCCc----c-cc---cccCCCEEccCCcccCcchhhHhhcCCcccc
Confidence 4555553 32 4467799999 9999999985321 1 12 23458899999999999999999998754
Q ss_pred ---CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------------CHHHHHHHHHHhCC
Q 012333 100 ---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELLGL 162 (466)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------------~~~~~~~~~~~~g~ 162 (466)
+.++.+|+. ..|+....+++++.+......+.+++++||||+.++... ......++..+.|+
T Consensus 73 ~~~~~~l~~w~~-~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~ 151 (455)
T TIGR02022 73 GSGGDSFWTWRE-LMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGI 151 (455)
T ss_pred cCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhCC
Confidence 246788975 567777789999999999999999999999999985311 13567888899999
Q ss_pred eEEeecccccCCC--CCCccc----ccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 012333 163 RACLVQSTMDCGE--GLPASW----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (466)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 236 (466)
|..+...+++... +.++.. ................+.++. .+.+...++++.++.++++.+.++.+ +++++
T Consensus 152 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g 228 (455)
T TIGR02022 152 GLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAA--QPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQ 228 (455)
T ss_pred eEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhcc--CCceEEEEecCCCCcCCHHHHHHHHH-HHhCC
Confidence 9877665543211 122110 011122222222222222222 24577778888888999999999999 88999
Q ss_pred CccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCcc
Q 012333 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAP 315 (466)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~ 315 (466)
+++++|+.+...+........+ ..+.+.++..+.++.+.++.||.++++++++++++.|+.+++||.+++++ .+.+|
T Consensus 229 ~~v~~H~~e~~~e~~~~~~~~G--~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~g~~p 306 (455)
T TIGR02022 229 APVHIHVAEQQKEVDDCLAWSG--RRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCPTTEANLGDGIFP 306 (455)
T ss_pred CceEEEECCChHHHHHHHHHhC--CCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEEChhhhccccCCCCC
Confidence 9999999988777666655544 45789999999999999999999999999999999999999999999877 67899
Q ss_pred HHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCC-CCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 316 IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT-TDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 316 ~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
+++++++|+++++|||+.. ..+++++|+.+...++......... ..+..++.+++++++|.++|+++|+ + .|+|
T Consensus 307 i~~l~~~Gv~v~lGTD~~~---~~d~~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~-~GsL 381 (455)
T TIGR02022 307 AVDFVAAGGRFGIGSDSHV---VIDVAEELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-A-TGGL 381 (455)
T ss_pred HHHHHHCCCeEEEECCCCC---CCCHHHHHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-C-CCcc
Confidence 9999999999999999743 3689999998876655321100000 1123578899999999999999999 4 8999
Q ss_pred ccCCccCEEEEcCCCCCCCCc--CCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHH
Q 012333 395 EAGKKADMVVVDPFSWPMVPV--HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 462 (466)
Q Consensus 395 ~~G~~ADlvv~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 462 (466)
++||.|||||+|.+.+...|. .++...+++.....+|..|||+|++|+++|+++ +.+++.+.+.+.
T Consensus 382 e~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~--~~~~~~~~~~~~ 449 (455)
T TIGR02022 382 RAGARADFLTLDGDHPYLAGALGDSLLDRWLFAGGGAAVRDVWVGGRWVVRDGRHA--LREEIGRAFARV 449 (455)
T ss_pred CCCCCcCEEEEeCCCcccCCCCchhHHHHHhhcCCCCCccEEEECCEEEEECCccc--cHHHHHHHHHHH
Confidence 999999999999885554453 567888888888899999999999999999996 666677776654
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=365.47 Aligned_cols=392 Identities=21% Similarity=0.245 Sum_probs=299.3
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|+.|++.++...++.+++|+|+ |+|++|++..+....+ ++.++||++|++|+|||||+|+|+.++..++...+
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~--~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~ 78 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKY--PNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDY 78 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhC--CCCcEEecCCcEEccCccccccchhhhhhccccCC
Confidence 57999999987754567789999999 9999999854432211 23468999999999999999999999988887777
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCCcc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (466)
.++.+|+....+..+ .+.++..+........+++++||||+.++.... ...++..+.|+|..+....... +..
T Consensus 79 ~~~~~wl~~~~~~~~-~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~--~~~~a~~~~GiR~~~~~~~~~~----~~~ 151 (408)
T PRK08418 79 GDFIPWLGSVINHRE-DLLEKCKGALIQQAINEMLKSGVGTIGAISSFG--IDLEICAKSPLRVVFFNEILGS----NAS 151 (408)
T ss_pred CchHHHHHHHhhhhh-hcCHHHHHHHHHHHHHHHHhcCceEEEEeecch--hhHHHHHhcCCeEEEEeeeeCC----Ccc
Confidence 788999988776664 355666666677788999999999999875432 3367888999999775433321 111
Q ss_pred cccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCC-
Q 012333 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV- 259 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~- 259 (466)
+. ........+.++.......+.++..++++.++.++++.++++.++|+++++++++|+.++..+..+.....+.
T Consensus 152 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~ 227 (408)
T PRK08418 152 AV----DELYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWF 227 (408)
T ss_pred ch----hhhHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCch
Confidence 11 1111112222222222234578888999999999999999999999999999999999998887776665441
Q ss_pred -------------CCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCc
Q 012333 260 -------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 325 (466)
Q Consensus 260 -------------~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~ 325 (466)
...+.+.++.++ ..+.++.||.++++++++++++.|+.+++||.+++++ .+.+|++++++.|++
T Consensus 228 ~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H~~~~~~~di~~la~~g~~v~~cP~sn~~lg~g~~p~~~~~~~Gi~ 305 (408)
T PRK08418 228 KKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTHCVYASEEELEKIKSKNASITHCPFSNRLLSNKALDLEKAKKAGIN 305 (408)
T ss_pred hhhhhhhcccccccCCHHHHHHHhC--CCCeEEEecccCCHHHHHHHHHcCCcEEECHhHHHHhcCCCccHHHHHhCCCe
Confidence 224667777665 4678999999999999999999999999999999887 678999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEE
Q 012333 326 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 405 (466)
Q Consensus 326 ~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~ 405 (466)
+++|||+..+++.++++.+|+.+....+.. ....+++++++++|.++|+++|++ .|+|++||.||||++
T Consensus 306 v~lGtD~~~~~~~~~~~~em~~~~~~~~~~---------~~~~~~~~~l~~aT~~gA~alg~~--~G~l~~G~~ADlv~~ 374 (408)
T PRK08418 306 YSIATDGLSSNISLSLLDELRAALLTHANM---------PLLELAKILLLSATRYGAKALGLN--NGEIKEGKDADLSVF 374 (408)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHHHHHhccC---------CccccHHHHHHHHHHHHHHHhCCC--CccccCCCccCEEEE
Confidence 999999877767889999999887655421 111357899999999999999994 699999999999999
Q ss_pred cCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 406 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 406 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
|.+.....+..+|...+ + ....|..|||+|++|.
T Consensus 375 d~~~~~~~~~~~~~~~~-~--~~~~v~~v~v~G~~v~ 408 (408)
T PRK08418 375 ELPEECTKKEQLPLQFI-L--HAKEVKKLFIGGKEVK 408 (408)
T ss_pred eCCCCCCChhHhHHHHH-h--ccCccceEEECCEEcC
Confidence 98732111222333322 1 3468999999999873
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=365.96 Aligned_cols=384 Identities=21% Similarity=0.283 Sum_probs=299.4
Q ss_pred ceeeceEE-EEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC-----CCCchHhhhh
Q 012333 36 RVFRNGGV-FVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-----DVDLMTWLHD 109 (466)
Q Consensus 36 ~~~~~~~v-~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~-----~~~~~~~~~~ 109 (466)
++.++++| +|+||+|++||+.. ..++||++|++|+|||||+|+|+.++.+++... ..++.+|+.
T Consensus 6 ~~~~~~~i~~v~~g~I~~Vg~~~---------~~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~- 75 (418)
T cd01313 6 GWERNVRIEVDADGRIAAVNPDT---------ATEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRE- 75 (418)
T ss_pred ceecCeEEEEeCCCeEEEecCCC---------CCcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHH-
Confidence 46678899 99999999999743 124699999999999999999999999998754 356778984
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------------CHHHHHHHHHHhCCeEEeecccccCCC
Q 012333 110 RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELLGLRACLVQSTMDCGE 175 (466)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (466)
..|+....+++++.+......+.+++++||||++++... ......++..+.|+|..+....++...
T Consensus 76 ~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~ 155 (418)
T cd01313 76 LMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAG 155 (418)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccC
Confidence 456777788999999999999999999999999986311 124567888899999987655543221
Q ss_pred CC-Cccc-----ccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcch
Q 012333 176 GL-PASW-----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (466)
Q Consensus 176 ~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~ 249 (466)
.. .+.. ......+.++...+.++.+.. .+.+...+.++....++++.+++++++|++ |+++++|+.+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e 232 (418)
T cd01313 156 FGGPAPNPGQRRFINGYEDFLGLLEKALRAVKE--HAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKE 232 (418)
T ss_pred CCCCCCchhhhhhcccHHHHHHHHHHHhhhhcc--CCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHH
Confidence 00 1100 001112222222232233332 356777788888889999999999999999 99999999887665
Q ss_pred hHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEE
Q 012333 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSL 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~ 328 (466)
........+ ..+.+.+...+.++.+.++.||.++++++++++++.|+.+++||.+++++ .+.+|++++++.|+++++
T Consensus 233 ~~~~~~~~g--~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~l 310 (418)
T cd01313 233 VDDCLAAHG--RRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCPTTEANLGDGIFPAAALLAAGGRIGI 310 (418)
T ss_pred HHHHHHHcC--CCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECCCchhhccCCCCCHHHHHHCCCcEEE
Confidence 555444433 45788999999999999999999999999999999999999999999877 678999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 329 GTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 329 gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
|||+... .+++..++.+...++........+...+.++++++|+++|.++|+++|++ +|+|++||.|||||+|.+
T Consensus 311 GtD~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~ 385 (418)
T cd01313 311 GSDSNAR---IDLLEELRQLEYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLD 385 (418)
T ss_pred ecCCCCC---cCHHHHHHHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCC
Confidence 9997543 58999998876655432111111112346999999999999999999995 899999999999999999
Q ss_pred CCCCCCc--CCcccceecccCCCCeeEEEEccE
Q 012333 409 SWPMVPV--HDRITSLVYCMRTENVVSVMCNGQ 439 (466)
Q Consensus 409 ~~~~~~~--~~~~~~~~~~~~~~~v~~v~v~G~ 439 (466)
.....|. .+|+..+++......|..|||+|+
T Consensus 386 ~~~~~p~~~~~~~~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 386 HPSLAGALPDTLLDAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred CccccCCCchhHHHHHeecCCCCceeEEEeCCC
Confidence 7666665 478999999999999999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=363.62 Aligned_cols=408 Identities=33% Similarity=0.548 Sum_probs=339.2
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
..++|+|..++..|+... ++.+++.|++|+|+.|++..+.+ ++.++||++|++|+|||||+|+|+.++..++..
T Consensus 2 ~~~~i~~~~~~~~d~~~~-~~~~~~~i~~g~I~~ig~~~~~~-----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~ 75 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGR-IEDGDLVIEDGKIVAIGANAEGP-----PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLA 75 (421)
T ss_pred cceeeeCcEEeecCcccc-eeeeeEEEcCCEEEEeCCcCCCC-----CCceeecCCCCEeccCccccccchHHHHHhhhh
Confidence 357889999998655433 56789999999999999975431 367899999999999999999999999999998
Q ss_pred CCCCchHhhhhccccccCC-CChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHHHHhCCeEEeecccccCC
Q 012333 99 DDVDLMTWLHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCG 174 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (466)
...++.+|+....|+.+.. .++++.+......+.+++++|+|++....... .....++..+.|++...+..+++.+
T Consensus 76 ~~~~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~ 155 (421)
T COG0402 76 DDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVA 155 (421)
T ss_pred cccchHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCC
Confidence 8888999999988988877 56668888888999999999999976654332 3346778999999999988887754
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
++....... +. ++...+.++++...+ .+.+.+.++.++.++++.++.+.++++++|+++++|+.|+..+.....
T Consensus 156 --~p~~~~~~~-~~-~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~ 229 (421)
T COG0402 156 --FPDPGAETD-EE-LEETEELLREAHGLG--RDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVL 229 (421)
T ss_pred --CCcccccch-HH-HHHHHHHHHHHhcCC--CeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHH
Confidence 222222111 11 556778888887765 677778999999999999999999999999999999999999888887
Q ss_pred hhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCC
Q 012333 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~ 333 (466)
... +....+.++..+++..+.++.|++++++++++.+++.|+.+++||.+|+++ .+..|+.++++.|+++++|||..
T Consensus 230 ~~~--g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG~~p~~~~~~~gv~v~~gTD~~ 307 (421)
T COG0402 230 EPY--GARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSGIAPVRRLLERGVNVALGTDGA 307 (421)
T ss_pred hhc--CCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCCCCCHHHHHHcCCCEEEecCCc
Confidence 733 445888899999999999999999999999999999999999999999998 66899999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC
Q 012333 334 PSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~ 413 (466)
.+++.+++|.++..+..+++....... ..... ++++++|.++|++||+ ++.|+|++|++|||||+|.+.....
T Consensus 308 ~~~~~~d~l~~~~~a~~l~~~~~~~~~-----~~~~~-~~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~ 380 (421)
T COG0402 308 ASNNVLDMLREMRTADLLQKLAGGLLA-----AQLPG-EALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLA 380 (421)
T ss_pred cccChHHHHHHHHHHHHHHHhhcCCCc-----ccchH-HHHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCccc
Confidence 887778999999999888775432111 11222 4999999999999998 6799999999999999999965444
Q ss_pred CcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 414 PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
+.. +.+.+++......|..|+++|+.++++++..
T Consensus 381 ~~~-~~~~~v~~~~~~~v~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 381 PLR-PVSRLVFAAGGKDVDRVLVDGRLVMEDGRLL 414 (421)
T ss_pred ccc-HHHHHHHhcCCCceeEEEECCEEEEEcceeh
Confidence 444 6667888887889999999999999999876
|
|
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=340.54 Aligned_cols=413 Identities=26% Similarity=0.346 Sum_probs=336.0
Q ss_pred EEEccEEEee-cCCcceeeceEEEEEC-CEEEEEcCCchhhhhhcc-----CCCeEEeCCCcEEeecccccccC-Ccccc
Q 012333 22 ILHNAVIVTM-DKESRVFRNGGVFVVQ-DRIKAIGQSADILQQFSQ-----MADQIIDLQSQILLPGFVNTHVH-TSQQL 93 (466)
Q Consensus 22 lI~n~~i~~~-d~~~~~~~~~~v~I~~-G~I~~Ig~~~~~~~~~~~-----~~~~~iD~~G~~v~PG~ID~H~H-~~~~~ 93 (466)
+..|..+.+. .++..+.++..+.|.| |||+.|++......++.. +..++++..|.++||||||+|+| ..+..
T Consensus 8 v~~gtf~~~~~~~~l~i~e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~ 87 (439)
T KOG3968|consen 8 VFVGTFVHTDALGELEILEGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFA 87 (439)
T ss_pred EecccEEeeccccceEEecCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhh
Confidence 3444444432 2345677788889987 999999986544322211 24478999999999999999999 44555
Q ss_pred cccccCCCCchHhhhhccccccCCCCh-hHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHHHHhCCeEEeecc
Q 012333 94 AKGIADDVDLMTWLHDRIWPYESNMTE-EDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQS 169 (466)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~ 169 (466)
..+...+.++.+|+.++.|+.+...+. ++.+.......++++++|+||+..+.+.+ ..-++++....|+|..++..
T Consensus 88 ~s~~g~d~pll~wl~~~~f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv 167 (439)
T KOG3968|consen 88 MSGAGTDMPLLQWLGKYTFPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKV 167 (439)
T ss_pred hhccccCcHHHHHhhcceeecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeee
Confidence 556667899999999999999999888 55555555678999999999998876544 34567888899999999999
Q ss_pred cccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcch
Q 012333 170 TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (466)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~ 249 (466)
.++++. +.+.+.....+..+....+++....+.....+.....++....++...+++...+++...+++++|..++..+
T Consensus 168 ~m~~~~-~~~p~~~~~~E~si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~E 246 (439)
T KOG3968|consen 168 CMDCNA-HAVPKGVETTEESIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKE 246 (439)
T ss_pred hhccCC-CCCCccchhHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHH
Confidence 998774 3444455566777777777777777666666666566777778888899999999999999999999999999
Q ss_pred hHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEE
Q 012333 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSL 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~ 328 (466)
..+....++--......++..++++++.+++|+.++++++++.++++|..+.+||.++..+ .+.++++++++.|+.+.+
T Consensus 247 I~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~~v~VgL 326 (439)
T KOG3968|consen 247 IEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRVRELLDIGVIVGL 326 (439)
T ss_pred HHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceEECCcchhhhccCCccHHHHHhcCceEee
Confidence 9999888887777888899999999999999999999999999999999999999999888 789999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 329 GTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 329 gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
|||..+ +++...++.+..+++...... +...||++|+|.+||.++|++||+++..|++++||.+|++++|.+
T Consensus 327 GtDv~~----~s~l~a~r~A~~~s~hL~~~~----~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s 398 (439)
T KOG3968|consen 327 GTDVSG----CSILNALRQAMPMSMHLACVL----DVMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLS 398 (439)
T ss_pred cCCccc----cccHHHHHHHHHHHHHHHhcc----CcccCCHHHHHHHHhccchhhccCCCcccceecccccceEEEeCC
Confidence 999876 367778777777665432222 345799999999999999999999999999999999999999999
Q ss_pred CCC----CCC-cCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 409 SWP----MVP-VHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 409 ~~~----~~~-~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
.|. ..+ .++.++.++|..+++++..|||+|+.|++
T Consensus 399 ~~~~~l~~~~~~~~lI~~~v~~g~drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 399 APESPLYRFSGHHDLISKVVYNGDDRNIAEVFVAGKLVKQ 438 (439)
T ss_pred CCcchhhhccchHHHHHHHHhcCCCCceEEEEEccEEecc
Confidence 552 223 45678889999999999999999999875
|
|
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=348.55 Aligned_cols=364 Identities=20% Similarity=0.278 Sum_probs=289.6
Q ss_pred CEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHH
Q 012333 48 DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIST 127 (466)
Q Consensus 48 G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
|+|++||+..+....+ ++.+++|++|++|+|||||+|+|+.++.+++...+.++.+|+.... +....+++++.+...
T Consensus 1 ~~I~aVG~~~~~~~~~--~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~-~~~~~~~~e~~~~~a 77 (381)
T cd01312 1 DKILEVGDYEKLEKRY--PGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVI-NSRDELLKQPWEEAI 77 (381)
T ss_pred CeEEEECChHHHHhhc--CCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHH-HHHHhcChHHHHHHH
Confidence 7999999865543333 2568999999999999999999999999998777788999997654 455667788888888
Q ss_pred HHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCC
Q 012333 128 LLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGR 207 (466)
Q Consensus 128 ~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (466)
...+.+++++||||+.|+... ....++..+.|+|..++...++... .. .........+.+.++....++.
T Consensus 78 ~~~~~E~l~~G~Tt~~d~~~~--~~~~~a~~~~GiR~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~ 147 (381)
T cd01312 78 RQGIRQMLESGTTSIGAISSD--GSLLPALASSGLRGVFFNEVIGSNP---SA-----IDFKGETFLERFKRSKSFESQL 147 (381)
T ss_pred HHHHHHHHHhCCeEEEEecCC--HHHHHHHHHcCCcEEEEEeeECCCC---ch-----hhhhHHHHHHHHHHhhccCccc
Confidence 889999999999999998643 2377888899999988776654221 11 1111122222333332223467
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcC----------------CCCchHHHHhhhc
Q 012333 208 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK----------------VDHGTVTFLDKIE 271 (466)
Q Consensus 208 i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 271 (466)
++..++++.++.++++.++++.++|+++++++++|+.++..+..+.....+ .+..+++.++.++
T Consensus 148 v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g 227 (381)
T cd01312 148 FIPAISPHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLG 227 (381)
T ss_pred eEEEECCCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcC
Confidence 888899999999999999999999999999999999999888766554321 1556889999999
Q ss_pred cCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHH
Q 012333 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASL 350 (466)
Q Consensus 272 ~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~ 350 (466)
+++.+.++.||.++++++++++++.|+.+++||.+++++ .+..|++++++.|+++++|||+...++..+++.+|+.+..
T Consensus 228 ~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~~~~ 307 (381)
T cd01312 228 GLGTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKAGIPVSLGTDGLSSNISLSLLDELRALLD 307 (381)
T ss_pred CCCCCcEEEECCcCCHHHHHHHHHcCCeEEECcchhhhhcCCCcCHHHHHHCCCcEEEeCCCCccCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999876 5788999999999999999998776667899999998876
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCC
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTEN 430 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
..+... ..+++.++|+++|.++|+++|++ .|+|++||+||||++|.+.. ..|..++. .++ .....
T Consensus 308 ~~~~~~---------~~~~~~~~l~~aT~~gA~alg~~--~Gsle~Gk~ADlvv~d~~~~-~~~~~~~~-~~~--~~~~~ 372 (381)
T cd01312 308 LHPEED---------LLELASELLLMATLGGARALGLN--NGEIEAGKRADFAVFELPGP-GIKEQAPL-QFI--LHAKE 372 (381)
T ss_pred hccccc---------ccCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcccEEEEeCCCc-CCCCccHH-HHH--HccCC
Confidence 543220 12678999999999999999994 89999999999999998854 23554543 222 24579
Q ss_pred eeEEEEccE
Q 012333 431 VVSVMCNGQ 439 (466)
Q Consensus 431 v~~v~v~G~ 439 (466)
|..|||+|+
T Consensus 373 v~~v~v~G~ 381 (381)
T cd01312 373 VRHLFISGK 381 (381)
T ss_pred CCEEEecCC
Confidence 999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=340.20 Aligned_cols=367 Identities=19% Similarity=0.287 Sum_probs=281.8
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++++ .....+++|+|++|+|++|++.. ++.++||++|++| |||||+|+|+..+..++...+
T Consensus 2 ~li~~~~v~~~~--~~~~~~~~v~i~~g~I~~i~~~~--------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~ 70 (375)
T PRK07213 2 LVYLNGNFLYGE--DFEPKKGNLVIEDGIIKGFTNEV--------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIG 70 (375)
T ss_pred EEEEeeEEEeCC--CCceeeeEEEEECCEEEEeccCC--------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCC
Confidence 689999999743 23456779999999999998641 2457999999999 999999999999888888777
Q ss_pred CCchHhhhh---ccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHHHHhCCeEEeecccccCC
Q 012333 101 VDLMTWLHD---RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCG 174 (466)
Q Consensus 101 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (466)
.++.+|+.. ..+.....+++++.+......+.+++++||||+.|+.... ...+.++....+++.....
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~~~~~~~~~~a~~~~~~r~~~~~------ 144 (375)
T PRK07213 71 KSLDELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGGIKGINLLKKASSDLPIKPIILG------ 144 (375)
T ss_pred CCHHHHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcChhHHHHHHHHHHcCCCceEEec------
Confidence 788888642 1222335677888888888899999999999999964222 3334555566666653210
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
.+... ..+.. .+.++++.+... .++++.....+++.++++++.|+++++++++|+.+...+.....
T Consensus 145 --~~~~~---~~~~~----~~~~~~~~~~~~-----g~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~ 210 (375)
T PRK07213 145 --RPTEA---DENEL----KKEIREILKNSD-----GIGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSL 210 (375)
T ss_pred --CCCcc---cchhh----HHHHHHHHHhcc-----cccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHH
Confidence 00000 01111 122222211111 14555666788999999999999999999999999887766665
Q ss_pred hhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCC
Q 012333 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~ 333 (466)
...+. .+.+.+...+.. .+ .+.|+.++++++++++++.|+.+++||.+++.. .+.+|++++++.|+++++|||..
T Consensus 211 ~~~G~--~~v~~~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGTD~~ 286 (375)
T PRK07213 211 EKYGM--TEIERLINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLEKGILLGIGTDNF 286 (375)
T ss_pred HHcCC--ChHHHHHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEECCcchhhhccCCccHHHHHHCCCEEEEeeCCC
Confidence 54443 466767777765 44 589999999999999999999999999999877 67899999999999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC
Q 012333 334 PSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~ 413 (466)
+. +..+++.+++.+.... ++++.++++++|.++|++||+++ .|+|++|+.||||++|.+. ..
T Consensus 287 ~~-~~~~~~~e~~~~~~~~--------------~~~~~~~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~--~~ 348 (375)
T PRK07213 287 MA-NSPSIFREMEFIYKLY--------------HIEPKEILKMATINGAKILGLIN-VGLIEEGFKADFTFIKPTN--IK 348 (375)
T ss_pred CC-chHhHHHHHHHHHHHh--------------CcCHHHHHHHHHHHHHHHhCCCC-cCCcCCCCcccEEEEcCcc--cc
Confidence 54 3457888888764321 38999999999999999999964 8999999999999999864 34
Q ss_pred CcCCcccceecccCCCCeeEEEEccEE
Q 012333 414 PVHDRITSLVYCMRTENVVSVMCNGQW 440 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~~v~~v~v~G~~ 440 (466)
|..||+..+++......|..|||+||+
T Consensus 349 p~~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 349 FSKNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred ccCCchHHHhhhccCCCceEEEECCcC
Confidence 788999999999989999999999984
|
|
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=326.10 Aligned_cols=380 Identities=20% Similarity=0.263 Sum_probs=251.6
Q ss_pred ccceEEEEccEEEeecCCc----ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccc
Q 012333 17 SSSTMILHNAVIVTMDKES----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQ 92 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~----~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~ 92 (466)
+|++++|+|+.|+++++.. +.+++++|+|+||+|++|++..+.+. ....++||++|++|+|||||+|+|+++.
T Consensus 1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~---~~~~~~iD~~g~~v~PG~id~H~Hl~~~ 77 (406)
T PRK09356 1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA---AYAAEVIDAGGKLVTPGLIDCHTHLVFG 77 (406)
T ss_pred CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc---ccCceEEECCCCEEeeceEecCCCcccC
Confidence 4688999999999876532 67789999999999999998643321 1235899999999999999999999865
Q ss_pred ccccc-----cCCCCchHhhhhc-----cccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC--H---HHHHHHH
Q 012333 93 LAKGI-----ADDVDLMTWLHDR-----IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--V---SEMAKAV 157 (466)
Q Consensus 93 ~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--~---~~~~~~~ 157 (466)
..++. ....++.+|+... .+......+.++.+......+.+++++|||++.+.+... . ....++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~ 157 (406)
T PRK09356 78 GNRANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVA 157 (406)
T ss_pred CCcHHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHH
Confidence 44432 2233445554321 112234466677777778888999999999998754221 1 1122333
Q ss_pred HHh----CCeEEeecccccCCCCCCcccccCChHHHHHHH-HHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHH
Q 012333 158 ELL----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ-KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (466)
Q Consensus 158 ~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a 232 (466)
... +++... ... .+.+++.... ......+... .+.++..... ..+............+++.+.+++++|
T Consensus 158 ~~~~~~~~i~~~~--~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~~A 231 (406)
T PRK09356 158 RRLGEEHPVDVVT--TFL-GAHAVPPEYK-GRPDAYIDLVCEEMLPAVAEE--GLADAVDVFCETGAFSVEQSERVLEAA 231 (406)
T ss_pred HHHhhhCCCceEe--eee-ecccCCcccc-CCHHHHHHHHHHHHhHHHHhc--CCcceEEEEecCCCCCHHHHHHHHHHH
Confidence 333 333211 111 1112232221 1112222221 1233332221 223332223334456789999999999
Q ss_pred HHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc--
Q 012333 233 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-- 310 (466)
Q Consensus 233 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-- 310 (466)
+++|+++++|+.+..... ..+.....+ ...+.|+.++++++++++++.|+.+++||.+++..
T Consensus 232 ~~~g~~v~~H~~~~~~~~------------~~~~~~~~~----~~~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~ 295 (406)
T PRK09356 232 KALGLPVKIHAEQLSNLG------------GAELAAEYG----ALSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRE 295 (406)
T ss_pred HHCCCCEEEEEecccCCC------------HHHHHHHcC----CcEehHhhcCCHHHHHHHHHhCCEEEECccchhhcCc
Confidence 999999999997532211 111111111 23578999999999999999999999999988765
Q ss_pred cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCc
Q 012333 311 LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDND 390 (466)
Q Consensus 311 ~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~ 390 (466)
.+..+++++++.|+++++|||+.+. .+++..+........ ...+++++++++++|.+||+++|++++
T Consensus 296 ~~~~~~~~l~~~Gi~v~lgtD~~~~---~~~~~~~~~~~~~~~----------~~~~l~~~~~l~~~T~~~A~~~g~~~~ 362 (406)
T PRK09356 296 TQYPPARLLRDAGVPVALATDFNPG---SSPTESLLLAMNMAC----------TLFRLTPEEALAAVTINAARALGRQDT 362 (406)
T ss_pred ccCchHHHHHHCCCeEEEeCCCCCC---CChhHHHHHHHHHHh----------hhcCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999998542 134444443322110 112599999999999999999999888
Q ss_pred ccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 391 IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 391 ~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
+|+|++||.|||||+|.+++. . +++.....+|..||++|++||+
T Consensus 363 ~G~i~~G~~AD~vvld~~~~~-----~----~~~~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 363 HGSLEVGKKADLVIWDAPSPA-----E----LPYHFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred ceeeCCCCcCCEEEECCCchh-----h----hhhhhCCCCccEEEECCEEeeC
Confidence 999999999999999998432 1 2222345799999999999985
|
|
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=313.49 Aligned_cols=368 Identities=18% Similarity=0.187 Sum_probs=249.8
Q ss_pred EEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCC
Q 012333 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (466)
Q Consensus 22 lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~ 101 (466)
.|+|++|+++ . ..+++|+|+||+|++|++..+. + ++.++||++|++|+|||||+|+|++++.+++...+.
T Consensus 1 ~~~~~~~~~~--~---~~~~~v~I~~g~I~~Vg~~~~~----~-~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~ 70 (398)
T cd01293 1 LLRNARLADG--G---TALVDIAIEDGRIAAIGPALAV----P-PDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNN 70 (398)
T ss_pred CeeeeEEeCC--C---ceEEEEEEECCEEEEEecCCCC----C-CCCceEeCCCCEEccCEeeeeeccCcccccCCCCCC
Confidence 3789999953 1 3667999999999999986432 1 367899999999999999999999887777755544
Q ss_pred CchHhhhhc--cccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-------HHHHHHHHHHhCCeEEeeccccc
Q 012333 102 DLMTWLHDR--IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------VSEMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 102 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~ 172 (466)
+...|+... +++....+++++.+......+.+++++||||++++.... .....++....+.+.........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (398)
T cd01293 71 SGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFP 150 (398)
T ss_pred CccccHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEecc
Confidence 444443221 112234577788888888889999999999998754311 22333443444433322111111
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHH
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 252 (466)
+..... . ++..+.++++.+.+...+. .........++++.++++++.|+++|+++++|+.+.......
T Consensus 151 -----~~~~~~--~----~~~~~~v~~~~~~g~~~~~-~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 218 (398)
T cd01293 151 -----QHGLLS--T----PGGEELMREALKMGADVVG-GIPPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSR 218 (398)
T ss_pred -----CccccC--C----CCHHHHHHHHHHhCCCEEe-CCCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchh
Confidence 000100 0 1223344444433322221 122222345678999999999999999999999876544222
Q ss_pred HHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-------hhHHHHHhcCCeEEECccchhhc----------cCCcc
Q 012333 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAMRM----------LGFAP 315 (466)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-------~~~~~~~~~g~~~~~~p~~~~~~----------~~~~~ 315 (466)
... .....+...+.. .+..+.|+.+++. +.++++++.|+.+++||.+++.. .+..+
T Consensus 219 ~~~------~~~~~~~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~ 291 (398)
T cd01293 219 TLE------ELAEEAERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTP 291 (398)
T ss_pred HHH------HHHHHHHHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCc
Confidence 111 123344455554 6678999998863 45999999999999999988654 46789
Q ss_pred HHHHHHcCCcEEEccCCCC----CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 316 IKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 316 ~~~~~~~gi~~~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
++++++.|+++++|||+.. .....+++..++.+....+.. ...+.+++|+++|.++|+++|+ +.
T Consensus 292 ~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~al~~aT~~~A~~lg~--~~ 359 (398)
T cd01293 292 VKELRAAGVNVALGSDNVRDPWYPFGSGDMLEVANLAAHIAQLG----------TPEDLALALDLITGNAARALGL--ED 359 (398)
T ss_pred HHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHHHHHHHHcCC----------ChhhHHHHHHhcChhhhhhcCC--cC
Confidence 9999999999999999842 223457888888765433210 1145689999999999999999 47
Q ss_pred cccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEE
Q 012333 392 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441 (466)
Q Consensus 392 G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 441 (466)
|+|++||.||||++|.+ |+++.... ..++..||++|+++
T Consensus 360 G~l~~Gk~ADlv~~d~~-----~~~~~~~~------~~~~~~v~~~G~~~ 398 (398)
T cd01293 360 YGIKVGCPADLVLLDAE-----DVAEAVAR------QPPRRVVIRKGRVV 398 (398)
T ss_pred cccccCCcceEEEECCC-----CHHHHHhc------CCCccEEEECCEEC
Confidence 99999999999999998 44332211 25899999999864
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=306.76 Aligned_cols=372 Identities=16% Similarity=0.210 Sum_probs=257.5
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
...++|+|++|++ +. . . .+|.|++|+|++|++..+.. .++.++||++|++|+|||||+|+|+....+++.
T Consensus 3 ~~~~li~~~~~~~--~~-~-~--~~i~i~~g~I~~i~~~~~~~----~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~ 72 (426)
T PRK09230 3 NALMTIKNARLPG--KE-G-L--WQITIEDGKISAIEPQSEAS----LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGE 72 (426)
T ss_pred CceEEEECcEEcC--CC-e-e--EEEEEECCEEEEecCCCCCC----CCCCceEeCCCCEeccceeEEEEccccceecCC
Confidence 4679999999984 32 1 2 49999999999999864311 125679999999999999999999998877775
Q ss_pred c---CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc---C---HHHHHHHHHHhCCeEEeec
Q 012333 98 A---DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---H---VSEMAKAVELLGLRACLVQ 168 (466)
Q Consensus 98 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---~---~~~~~~~~~~~g~~~~~~~ 168 (466)
. ...++.+|+... +.....+++++.+......+.+++++|+|+++++-.. . ...+.++........-...
T Consensus 73 ~~~~~~~~l~~~i~~~-~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i 151 (426)
T PRK09230 73 PNWNQSGTLFEGIERW-AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQI 151 (426)
T ss_pred CccCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEE
Confidence 4 456688998763 6666778888889999999999999999999875421 1 1222333333221111111
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccC--CHHHHHHHHHHHHHcCCccceeccCC
Q 012333 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNA--TDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
.... ..++-. ...... .++...+.+...+ ...++..+.. +++.+.+++++|+++|+++++|+.+.
T Consensus 152 ~a~~-~~~~~~---~~~~~~-------~l~~a~~~~~~~v--g~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~ 218 (426)
T PRK09230 152 VAFP-QEGILS---YPNGEA-------LLEEALRLGADVV--GAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEI 218 (426)
T ss_pred Eecc-CccccC---CccHHH-------HHHHHHHcCCCEE--eCCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 1100 000000 001111 2222222222212 2333443333 57889999999999999999999987
Q ss_pred cchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC-------ChhhHHHHHhcCCeEEECccchhhc---------
Q 012333 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-------NHTEIGLLSRAGVKVSHCPASAMRM--------- 310 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-------~~~~~~~~~~~g~~~~~~p~~~~~~--------- 310 (466)
..+...... ...+.+...+ ++.+.+..||.++ ++++++++++.|+.+++||.+++++
T Consensus 219 ~~~~~~~~~------~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn~~l~~~~~~~p~ 291 (426)
T PRK09230 219 DDEQSRFVE------TVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPK 291 (426)
T ss_pred CCcchHHHH------HHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCCCCCCCC
Confidence 655432211 2466677777 6788999999999 5789999999999999999999865
Q ss_pred -cCCccHHHHHHcCCcEEEccCCCCC----CCCCCHHHHHHHHHHHhcccccccCCCCCCCCC-CHHHHHHHHhHHHHHH
Q 012333 311 -LGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAAL-PAETVLRMATINGAKS 384 (466)
Q Consensus 311 -~~~~~~~~~~~~gi~~~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-s~~~al~~~T~~~A~~ 384 (466)
.+..|+++++++|+++++|||+... ....+++..++.+....+.. .. ++.++++++|.+||++
T Consensus 292 ~~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~l~maT~~gA~a 360 (426)
T PRK09230 292 RRGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLM-----------GYGQINDGLNLITTHSART 360 (426)
T ss_pred CCCCcCHHHHHHCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHHhhC-----------ChhhHHHHHHHHhcchhHH
Confidence 4567899999999999999997531 12357777777654433211 01 3679999999999999
Q ss_pred cCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 385 VLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 385 lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
+|+++ .| |++||.||||+++.+.+ .+.+ .....++.|+++|++|+..
T Consensus 361 lg~~~-~g-le~G~~ADlv~~~~~~~-----~~~~------~~~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 361 LNLQD-YG-IEVGNPANLIILPAENG-----FDAV------RRQVPVRYSIRHGKVIAET 407 (426)
T ss_pred hCCCC-cC-CCCCCcCCEEEEeCCCH-----HHHH------hccCCceEEEECCEEEecc
Confidence 99976 78 99999999999997521 1111 1135789999999999875
|
|
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=312.68 Aligned_cols=388 Identities=18% Similarity=0.239 Sum_probs=247.1
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
.+.|++|+|++|++.+. ...++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+....+.
T Consensus 3 ~~~~lli~~~~v~~~~~----~~~~~i~I~~g~I~~i~~~~~~----~-~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~- 72 (486)
T PLN02942 3 SSTKILIKGGTVVNAHH----QELADVYVEDGIIVAVAPNLKV----P-DDVRVIDATGKFVMPGGIDPHTHLAMPFMG- 72 (486)
T ss_pred CCCcEEEECcEEEcCCC----CeEeEEEEECCEEEEEcCCCCC----C-CCCeEEECCCCEEecCEeeeeeccCcccCC-
Confidence 46789999999997442 2456999999999999875321 1 256899999999999999999999542210
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHHHHhCCeEEeecccccC
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDC 173 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~ 173 (466)
....++ .....+.++.+||||+.|+.... .....+.......+.........
T Consensus 73 --------------------~~~~ed----~~s~s~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 127 (486)
T PLN02942 73 --------------------TETIDD----FFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMDYGFHM- 127 (486)
T ss_pred --------------------Ccccch----HHHHHHHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcCCCEEEEE-
Confidence 111111 22244668999999999984221 12222222222111111100000
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHH
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~ 253 (466)
+... .......+..++.+.. +...++.++.++.....+++.+.+.++.+++++.++++|+.+ .......
T Consensus 128 --~~~~-----~~~~~~~e~~~l~~~~---gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~HaE~-~~~~~~~ 196 (486)
T PLN02942 128 --AITK-----WDDTVSRDMETLVKEK---GINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGALAMVHAEN-GDAVFEG 196 (486)
T ss_pred --EecC-----CcHhHHHHHHHHHHhC---CCceEEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCC-HHHHHHH
Confidence 0000 0111122223332222 224477666666666678899999999999999999999644 3322211
Q ss_pred Hhh---cCC-C-------Cc-------hHHHHhhhccCCCCeeEEEeecCCh-hhHHHHHhcCCeEEECccchh-h----
Q 012333 254 MDT---RKV-D-------HG-------TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKVSHCPASAM-R---- 309 (466)
Q Consensus 254 ~~~---~~~-~-------~~-------~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~~p~~~~-~---- 309 (466)
... .+. + .. ....+...+.++.+..+.|+.+... +.++.+++.|+.++.+|.... .
T Consensus 197 ~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~ 276 (486)
T PLN02942 197 QKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDS 276 (486)
T ss_pred HHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHH
Confidence 111 111 0 00 1122334456678899999999888 899999999988876665311 1
Q ss_pred --------c----cCCccH---------HHHHHcCCcEEEccCCCCCCCCCCHHH--------------HHHHHHHHhcc
Q 012333 310 --------M----LGFAPI---------KEMLHADICVSLGTDGAPSNNRMSIVD--------------EMYLASLINKG 354 (466)
Q Consensus 310 --------~----~~~~~~---------~~~~~~gi~~~~gsD~~~~~~~~~~~~--------------~~~~~~~~~~~ 354 (466)
. .-.+|+ +.+++.|+++++||||.|++...+++. ++....+.++.
T Consensus 277 ~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~ 356 (486)
T PLN02942 277 KLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTM 356 (486)
T ss_pred HhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHH
Confidence 1 012465 588999999999999988754333221 12222222111
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC---cCCcccceecccC--CC
Q 012333 355 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP---VHDRITSLVYCMR--TE 429 (466)
Q Consensus 355 ~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~---~~~~~~~~~~~~~--~~ 429 (466)
. ....++++++++++|.|||+++|+++++|+|++|++||||++|++.....+ +.++....+|... ..
T Consensus 357 ~--------~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~~~~v~~~~~~s~~~~~py~g~~l~g 428 (486)
T PLN02942 357 V--------ESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVYEGRRGKG 428 (486)
T ss_pred H--------HcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCccEEEcHHHccccCCCCCccCcEeee
Confidence 0 112499999999999999999999777899999999999999998443333 2455555666665 57
Q ss_pred CeeEEEEccEEEEECCeeeecc-HHHHHHH
Q 012333 430 NVVSVMCNGQWVMKNKKILLLM-RGRLFQL 458 (466)
Q Consensus 430 ~v~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 458 (466)
+|..||++|++||++|+++... .|+++++
T Consensus 429 ~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~ 458 (486)
T PLN02942 429 KVEVTISQGRVVWENGELKVVRGSGRYIEM 458 (486)
T ss_pred eEEEEEECCEEEEECCEEeccCCCceEecC
Confidence 8999999999999999986544 4777654
|
|
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=305.52 Aligned_cols=352 Identities=21% Similarity=0.264 Sum_probs=235.3
Q ss_pred eceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc-----cCCCCchHhhhhc--c
Q 012333 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR--I 111 (466)
Q Consensus 39 ~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~-----~~~~~~~~~~~~~--~ 111 (466)
++++|+|++|+|++|++....+ ...+.++||++|++|+|||||+|+|++....++. ..+.++.+|+... .
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~---~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALP---GEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGI 78 (377)
T ss_pred CceEEEEECCEEEEEechhhCC---cccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCCh
Confidence 4679999999999999843221 1125689999999999999999999987665552 3566888998652 2
Q ss_pred ---ccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc--cCH---HHHHHHHHH----hCCeEEeecccccCCCCCCc
Q 012333 112 ---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--QHV---SEMAKAVEL----LGLRACLVQSTMDCGEGLPA 179 (466)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~--~~~---~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~ 179 (466)
++....+++++.+......+.+++++|||++..... ... ....++.++ .+++...... .. ..++.
T Consensus 79 ~~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~--~~-~~~~~ 155 (377)
T TIGR01224 79 LSTVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFL--GA-HAVPP 155 (377)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeee--ec-ccCCc
Confidence 256677888898889888999999999999843211 111 122333332 4444432211 11 01111
Q ss_pred ccccCChHHHHHHH-HHHHHHhccCCCCCeEE--EEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhh
Q 012333 180 SWAVRTTDDCIQSQ-KELYAKHHHAADGRIRI--WFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (466)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~ 256 (466)
.+.. .....+... ...++++...+ .+.. ..+.+. ..+.+.+.++++.|+++|+++.+|+.+.....
T Consensus 156 ~~~~-~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~--~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~------ 224 (377)
T TIGR01224 156 EFQG-RPDDYVDGICEELIPQVAEEG--LASFADVFCEAG--VFSVEQSRRILQAAQEAGLPVKLHAEELSNLG------ 224 (377)
T ss_pred cccC-CHHHHHHHHHHHHHHHHHHhC--CCCeeEEEecCC--CcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC------
Confidence 1101 111222211 22333333211 2222 133322 34567899999999999999999997643211
Q ss_pred cCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC-
Q 012333 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP- 334 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~- 334 (466)
..+.....+ ...+.|+.++++++++++++.|+.+++||.+++.+ .+.+|++++++.|+++++|||+.+
T Consensus 225 ------~~~~~~~~g----~~~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~p~~~l~~~Gv~v~lgTD~~~~ 294 (377)
T TIGR01224 225 ------GAELAAKLG----AVSADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPG 294 (377)
T ss_pred ------HHHHHHHcC----CCccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCccHHHHHHCCCCEEEECCCCCC
Confidence 122222222 23467999999999999999999999999998776 467899999999999999999754
Q ss_pred CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC
Q 012333 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~ 414 (466)
.++..+++..+..... ..+++++++++++|.+||+++|+++++|+|++||.|||||+|.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~--------------~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~-- 358 (377)
T TIGR01224 295 SSPTLSMQLIMSLACR--------------LMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAE-- 358 (377)
T ss_pred CChhHHHHHHHHHHHH--------------hcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHH--
Confidence 3222223333222211 124999999999999999999998779999999999999999994322
Q ss_pred cCCcccceecccCCCCeeEEEEccEE
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNGQW 440 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G~~ 440 (466)
+++.....+|..||++|++
T Consensus 359 -------~~~~~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 359 -------IPYHYGVNHVHAVIKNGNI 377 (377)
T ss_pred -------hhhhcCCCCceEEEECCCC
Confidence 2223345689999999984
|
This enzyme catalyzes the third step in histidine degradation. |
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=301.51 Aligned_cols=207 Identities=21% Similarity=0.166 Sum_probs=159.1
Q ss_pred cccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhc
Q 012333 217 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 296 (466)
Q Consensus 217 ~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 296 (466)
....+++.+.++++.|.+.|+++.+|+............ ........+..+.++.+.|...+++++++++++.
T Consensus 315 ~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~Lda-------fE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~L 387 (535)
T COG1574 315 ELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDA-------FEKARKKNGLKGLRHRIEHAELVSPDQIERFAKL 387 (535)
T ss_pred CcccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHH-------HHHHhhhcCCccCCceeeeeeecCHhHHHHHHhc
Confidence 445789999999999999999999999775433221111 1111122223345688999999999999999999
Q ss_pred CCeEEECccchhh-------------ccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCC
Q 012333 297 GVKVSHCPASAMR-------------MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 363 (466)
Q Consensus 297 g~~~~~~p~~~~~-------------~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (466)
|+.++++|.+... ....+|++.+++.|+++++|||++.. ..++|..++.+.............
T Consensus 388 gv~~svQP~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv~--~~dP~~~i~~AVtr~~~~g~~~~~-- 463 (535)
T COG1574 388 GVIASVQPNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPVE--PYDPWLGIYAAVTRKTPGGRVLGP-- 463 (535)
T ss_pred CceEeeccccccccchHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCCC--CCChHHHHHHHHcCCCCCCCCCcc--
Confidence 9999999875531 13467999999999999999999873 468999999887654432211100
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 364 ~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
...||+++||+++|.++|.+.+.++++|+|++||.|||+|+|.|.|...|.. + ...+++.||++|++||+
T Consensus 464 -~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~--i-------~~~~v~~T~~~Gk~VY~ 533 (535)
T COG1574 464 -EERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDS--I-------KDTKVVLTIVAGKVVYR 533 (535)
T ss_pred -ccccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHH--h-------ccceEEEEEEcCeEeec
Confidence 1159999999999999999999999999999999999999999966644321 2 23699999999999997
Q ss_pred C
Q 012333 444 N 444 (466)
Q Consensus 444 ~ 444 (466)
.
T Consensus 534 ~ 534 (535)
T COG1574 534 A 534 (535)
T ss_pred C
Confidence 4
|
|
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=311.47 Aligned_cols=375 Identities=19% Similarity=0.233 Sum_probs=235.9
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++.++ ..+++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+.....
T Consensus 1 lli~~~~v~~~~~----~~~~~i~I~~g~I~~ig~~~~~----~-~~~~viD~~g~~vlPGlID~H~H~~~~~~------ 65 (447)
T cd01314 1 LIIKNGTIVTADG----SFKADILIEDGKIVAIGPNLEA----P-GGVEVIDATGKYVLPGGIDPHTHLELPFM------ 65 (447)
T ss_pred CEEECCEEECCCC----ceeeeEEEECCEEEEeeCCCCC----C-CCceEEECCCCEEecCEEecccccccccc------
Confidence 4799999997542 3467999999999999875321 1 24589999999999999999999953211
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCH-HHHHHHHHHhCCeEEeecccccCCCCCCc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 179 (466)
.....++.+ ...+.++.+||||+++++.... ....++......+. ......+.+ ...
T Consensus 66 ---------------~~~~~e~~~----~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~--~~~ 123 (447)
T cd01314 66 ---------------GTVTADDFE----SGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKA-DGKSVIDYG--FHM 123 (447)
T ss_pred ---------------CccCcchHH----HHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHh-cCCCcccEE--EEE
Confidence 011222222 2234567899999999863221 12222222211110 011111111 000
Q ss_pred ccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhc--
Q 012333 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR-- 257 (466)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~-- 257 (466)
.. .......+.+..+.. +.+...++.++.++..+..+++.+.++++.+++++.++++|+ +............
T Consensus 124 ~~-~~~~~~~~~~~~~l~----~~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~-E~~~~~~~~~~~~~~ 197 (447)
T cd01314 124 II-TDWTDSVIEELPELV----KKGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHA-ENGDVIAELQKKLLA 197 (447)
T ss_pred ee-cCCChHHHHHHHHHH----HcCCCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEc-CCHHHHHHHHHHHHH
Confidence 00 001122233333332 234456887777777788899999999999999999999997 4444333222211
Q ss_pred -CCCC-------chH--------HHHhhhccCCCCeeEEEeecCCh-hhHHHHHhcCCeE--EECccchhhc--------
Q 012333 258 -KVDH-------GTV--------TFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKV--SHCPASAMRM-------- 310 (466)
Q Consensus 258 -~~~~-------~~~--------~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~g~~~--~~~p~~~~~~-------- 310 (466)
+... .+. ..+...+.++.+.++.|...... +.++.+++.|+.+ .+||.+.+..
T Consensus 198 ~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~ 277 (447)
T cd01314 198 QGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDW 277 (447)
T ss_pred cCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhcccc
Confidence 2110 011 12333445677777777765322 3577788888765 5899873211
Q ss_pred -cC-----Ccc---------HHHHHHcCCcEEEccCCCCCCCCCCHHH--------------HHHHHHHHhcccccccCC
Q 012333 311 -LG-----FAP---------IKEMLHADICVSLGTDGAPSNNRMSIVD--------------EMYLASLINKGREVFANG 361 (466)
Q Consensus 311 -~~-----~~~---------~~~~~~~gi~~~~gsD~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 361 (466)
.+ .+| +.+++++|+.+++|||+.+++...+++. +++...+.++..
T Consensus 278 ~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~------ 351 (447)
T cd01314 278 FEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGV------ 351 (447)
T ss_pred ccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHH------
Confidence 00 134 5589999999999999998764433332 455555554321
Q ss_pred CCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC--------CcCCcccceecccCCCCeeE
Q 012333 362 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV--------PVHDRITSLVYCMRTENVVS 433 (466)
Q Consensus 362 ~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~--------~~~~~~~~~~~~~~~~~v~~ 433 (466)
....++++++++++|.|||++||+.+++|+|++|++|||||+|.+..... +..+|+....+. .+|..
T Consensus 352 --~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~~~~~~~~~~g~~~~---g~v~~ 426 (447)
T cd01314 352 --AKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFEGMKVK---GWPVV 426 (447)
T ss_pred --HcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcCEEecHHHhhccCCCCcccCeEEe---eeEEE
Confidence 11249999999999999999999987899999999999999999842211 223444444332 48999
Q ss_pred EEEccEEEEECCeeee
Q 012333 434 VMCNGQWVMKNKKILL 449 (466)
Q Consensus 434 v~v~G~~v~~~g~~~~ 449 (466)
||++|++||++|+++.
T Consensus 427 t~v~G~~v~~~~~~~~ 442 (447)
T cd01314 427 TISRGKVVVEDGELVG 442 (447)
T ss_pred EEECCEEEEECCEEec
Confidence 9999999999999874
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=309.56 Aligned_cols=380 Identities=16% Similarity=0.210 Sum_probs=236.1
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++++ ..+++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+....
T Consensus 1 ~li~n~~vv~~~~----~~~~~V~I~dg~I~~Ig~~~~~----~-~~~~vIDa~G~~vlPGlID~H~H~~~~~------- 64 (454)
T TIGR02033 1 KLIRGGTVVNADD----VFQADVLIEGGKIVAVGRNLSP----P-DAVEEIDATGKYVMPGGIDVHTHLEMPF------- 64 (454)
T ss_pred CEEECcEEEcCCC----ceEEEEEEECCEEEEecCCCCC----C-CCCcEEECCCCEEecCEecceeccCccc-------
Confidence 4799999997543 2457999999999999874321 1 2458999999999999999999984311
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC----HHHHHHHHHHhCCe-EEeecccccCCC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGLR-ACLVQSTMDCGE 175 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~----~~~~~~~~~~~g~~-~~~~~~~~~~~~ 175 (466)
......++.+. ..+.++.+||||+++++... .....+........ ..........
T Consensus 65 --------------~~~~~~e~~~~----~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (454)
T TIGR02033 65 --------------GGTVTADDFFT----GTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMM-- 124 (454)
T ss_pred --------------CCCCCcchHHH----HHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEec--
Confidence 01122222222 23457789999999986432 12222222221111 1111011000
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh
Q 012333 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 255 (466)
.+ ......+.+ ..+.+.+.+...++.++.++..+..+++.+.++++.+++++.++++|+ +..........
T Consensus 125 -~~-----~~~~~~~~~---~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~-E~~~~~~~~~~ 194 (454)
T TIGR02033 125 -IT-----HWNDEVLEE---HIPELVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQVHA-ENGDVIAELQA 194 (454)
T ss_pred -cc-----CCcHHHHHH---HHHHHHhcCCcEEEEEeecCCCCCCCHHHHHHHHHHHHhCCCeEEEEc-CCHHHHHHHHH
Confidence 00 011111222 222233344456887777777778899999999999999999999997 44433221111
Q ss_pred h---cCCCC-------chH--------HHHhhhccCCCCeeEEEeec-CChhhHHHHHhcCCe--EEECccchh------
Q 012333 256 T---RKVDH-------GTV--------TFLDKIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVK--VSHCPASAM------ 308 (466)
Q Consensus 256 ~---~~~~~-------~~~--------~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~g~~--~~~~p~~~~------ 308 (466)
. .+... .+. ..+...+.++.+..+.|... .+-+.++.+++.|+. +.+||.+.+
T Consensus 195 ~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~ 274 (454)
T TIGR02033 195 RLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVSTASAVDEIAEAREKGQPVYGETCPQYLLLDDTIY 274 (454)
T ss_pred HHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHh
Confidence 1 11100 011 11333344566666666655 224677788888855 569998752
Q ss_pred -----hc-cC--Ccc---------HHHHHHcCCcEEEccCCCCCCCCCC------HH---------HHHHHHHHHhcccc
Q 012333 309 -----RM-LG--FAP---------IKEMLHADICVSLGTDGAPSNNRMS------IV---------DEMYLASLINKGRE 356 (466)
Q Consensus 309 -----~~-~~--~~~---------~~~~~~~gi~~~~gsD~~~~~~~~~------~~---------~~~~~~~~~~~~~~ 356 (466)
.. .. .+| ++.+++.|+.+++|||+.|++...+ .+ .++....++++..
T Consensus 275 ~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v- 353 (454)
T TIGR02033 275 DKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGV- 353 (454)
T ss_pred cCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHH-
Confidence 11 11 146 5699999999999999988752111 11 1444444443211
Q ss_pred cccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCC--------CCcCCcccceecccCC
Q 012333 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM--------VPVHDRITSLVYCMRT 428 (466)
Q Consensus 357 ~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~--------~~~~~~~~~~~~~~~~ 428 (466)
....++++++++++|.|||++||+++++|+|++|++|||+|+|.+.... .+..+|+..+.. .
T Consensus 354 -------~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~~~~~~~~~~~~~~~~~p~~g~~~---~ 423 (454)
T TIGR02033 354 -------ATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYNPFEGFKV---Q 423 (454)
T ss_pred -------HcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCcCeeechHHhhccCCCCcccCeEE---e
Confidence 1124899999999999999999997678999999999999999984321 123344444332 2
Q ss_pred CCeeEEEEccEEEEECCeeeecc-HHHHHH
Q 012333 429 ENVVSVMCNGQWVMKNKKILLLM-RGRLFQ 457 (466)
Q Consensus 429 ~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~ 457 (466)
.+|..||++|++||++|+++... .|++++
T Consensus 424 g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~ 453 (454)
T TIGR02033 424 GAVVSVLSRGRVVVEDGQFVGTAGSGRFIK 453 (454)
T ss_pred eeEEEEEECCEEEEECCEEecCCCCcceec
Confidence 58999999999999999987543 466553
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=294.12 Aligned_cols=344 Identities=18% Similarity=0.272 Sum_probs=227.1
Q ss_pred ceEEEEc-cEEEeecCCc-----ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccc
Q 012333 19 STMILHN-AVIVTMDKES-----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQ 92 (466)
Q Consensus 19 ~~~lI~n-~~i~~~d~~~-----~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~ 92 (466)
++++|+| +.|+++|+.. .++++++|+|++|+|++|++..+. + .+.++||++|++|+|||||+|+|+...
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~----~-~~~~~iD~~g~~v~PGlId~H~Hl~~~ 75 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADA----P-AADERVDAGGRAVLPGFVDSHSHLVFA 75 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccC----C-CCCeEEeCCCCEEecCeEecCcCcccc
Confidence 4789999 5999987654 678899999999999999985432 1 256899999999999999999999764
Q ss_pred ccccccCCCCchHhhhhcc---------ccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC--HHHHHHHHHHhC
Q 012333 93 LAKGIADDVDLMTWLHDRI---------WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--VSEMAKAVELLG 161 (466)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--~~~~~~~~~~~g 161 (466)
..++. ++.++..+.. ++....+++++.+......+.+++++|||++++.+... .....+..+..+
T Consensus 76 ~~r~~----~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~~~~~~~~~~~~~~ 151 (382)
T PRK14085 76 GDRSA----EFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGLTVEDEARSARIAA 151 (382)
T ss_pred CChhH----HHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCCCHHHHHHHHHHHH
Confidence 44431 1111111111 22344567788888888999999999999999976432 333333332222
Q ss_pred CeEEeecccccCCCCCCcccccCChHHHHHHHH-HHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccc
Q 012333 162 LRACLVQSTMDCGEGLPASWAVRTTDDCIQSQK-ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 240 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 240 (466)
+........ .+...++.+. ......+.... ..+...... ...++++... ...+.+++.++++.++++|+++.
T Consensus 152 -~~~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~ 224 (382)
T PRK14085 152 -EFTDEVTFL-GAHVVPPEYA-GDADEYVDLVCGPMLDAVAPH-ARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLR 224 (382)
T ss_pred -Hhhhcceee-ccccCCcccC-CCHHHHHHHHHHHHHHHHHHh-CCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeE
Confidence 111011111 1111222111 11222222111 111111111 3445543322 24577899999999999999999
Q ss_pred eeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHH
Q 012333 241 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEM 319 (466)
Q Consensus 241 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~ 319 (466)
+|+.+..... ........+. ..+.|+.++++++++++++.|+.+++||.+++.. .+.++++++
T Consensus 225 ~H~~~~~~~~------------~v~~~~~~g~----~~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~~~~~~~~~l 288 (382)
T PRK14085 225 VHGNQLGPGP------------GVRLAVELGA----ASVDHCTYLTDADVDALAGSGTVATLLPGAEFSTRQPYPDARRL 288 (382)
T ss_pred EEeCcccCCh------------HHHHHHHcCC----CcHHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcCCCCchHHHH
Confidence 9997532110 1222222222 2377999999999999999999999999988755 457899999
Q ss_pred HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCc
Q 012333 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKK 399 (466)
Q Consensus 320 ~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ 399 (466)
++.|+++++|||+++.. .+...+....... ....+++++++++++|.+||+++|++ .+|+|++|+.
T Consensus 289 ~~aGv~v~lgsD~~~~~---~~~~~~~~~~~~~----------~~~~~l~~~~al~~aT~~~A~~lg~~-~~G~l~~G~~ 354 (382)
T PRK14085 289 LDAGVTVALASDCNPGS---SYTSSMPFCVALA----------VRQMGMTPAEAVWAATAGGARALRRD-DVGVLAVGAR 354 (382)
T ss_pred HHCCCcEEEEeCCCCCC---ChHHHHHHHHHHH----------HHhcCCCHHHHHHHHHHHHHHHcCCC-CCCCcCCCCC
Confidence 99999999999986432 1222222221110 01235999999999999999999996 4899999999
Q ss_pred cCEEEEcCC
Q 012333 400 ADMVVVDPF 408 (466)
Q Consensus 400 ADlvv~d~~ 408 (466)
|||+|+|.+
T Consensus 355 ADlvv~d~~ 363 (382)
T PRK14085 355 ADLHVLDAP 363 (382)
T ss_pred CCEEEEcCC
Confidence 999999998
|
|
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=309.19 Aligned_cols=378 Identities=17% Similarity=0.184 Sum_probs=235.7
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
+|++|+|++|+++++ ..+++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+....
T Consensus 1 ~d~li~n~~v~~~~~----~~~~~v~I~~g~I~~i~~~---------~~~~viD~~g~~v~PGlID~H~H~~~~~----- 62 (459)
T PRK08323 1 MSTLIKNGTVVTADD----TYKADVLIEDGKIAAIGAN---------LGDEVIDATGKYVMPGGIDPHTHMEMPF----- 62 (459)
T ss_pred CcEEEECCEEEcCCC----ceEEEEEEECCEEEEEecC---------CCceEEECCCCEEeccEEeeeecccccc-----
Confidence 478999999997432 3457999999999999864 1457999999999999999999984310
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC----HHHHHHHHHHhCC-eEEeecccccC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGL-RACLVQSTMDC 173 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~----~~~~~~~~~~~g~-~~~~~~~~~~~ 173 (466)
......++.+ ...+.++.+||||+++++... .....+....... +.........
T Consensus 63 ----------------~~~~~~e~~~----~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 121 (459)
T PRK08323 63 ----------------GGTVSSDDFE----TGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHM- 121 (459)
T ss_pred ----------------CCccccCcHH----HHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEE-
Confidence 0011111111 123457789999999976321 1222222222111 1111100000
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHH
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~ 253 (466)
. . .......+.+..+. .+.+...++.++.++..+..+.+++.++++.++++|.++++|+. ........
T Consensus 122 ~--~-----~~~~~~~~~~~~~~----~~~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e-~~~~~~~~ 189 (459)
T PRK08323 122 I--I-----TDWNEVVLDEMPEL----VEEGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAE-NGDAIAYL 189 (459)
T ss_pred E--e-----cCCcHHHHHHHHHH----HHcCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcC-ChHHHHHH
Confidence 0 0 00111222222332 23333557777766666788999999999999999999999974 33332221
Q ss_pred Hhhc---CCC-------CchH--------HHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCeE--EECcc------c
Q 012333 254 MDTR---KVD-------HGTV--------TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKV--SHCPA------S 306 (466)
Q Consensus 254 ~~~~---~~~-------~~~~--------~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~--~~~p~------~ 306 (466)
.... +.. ..+. ..+...+.++.+..+.|.... +-+.++.+++.|+.+ .+||+ +
T Consensus 190 ~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~ 269 (459)
T PRK08323 190 QAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHVSCKEALEAIRRARARGQRVFGETCPQYLLLDES 269 (459)
T ss_pred HHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEEcCccceeecHH
Confidence 1110 110 0111 134444566677777776643 234677778888664 58998 4
Q ss_pred hhhcc----C-----Ccc---------HHHHHHcCCcEEEccCCCCCCCCCCHH---------------HHHHHHHHHhc
Q 012333 307 AMRML----G-----FAP---------IKEMLHADICVSLGTDGAPSNNRMSIV---------------DEMYLASLINK 353 (466)
Q Consensus 307 ~~~~~----~-----~~~---------~~~~~~~gi~~~~gsD~~~~~~~~~~~---------------~~~~~~~~~~~ 353 (466)
++... + .+| +.++++.|+.++++|||.|++...+.+ .+++...+.+.
T Consensus 270 ~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~ 349 (459)
T PRK08323 270 EYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSE 349 (459)
T ss_pred HhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHH
Confidence 44321 1 133 668999999999999999875432221 33333333322
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCc--------CCcccceecc
Q 012333 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITSLVYC 425 (466)
Q Consensus 354 ~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~ 425 (466)
.. ....++++++++++|.|||+++|+.+++|+|++|++|||||||++.....+. .+|+..+.+
T Consensus 350 ~~--------~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~s~~~g~~~- 420 (459)
T PRK08323 350 GV--------MTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTLHSNVDYNPYEGFEV- 420 (459)
T ss_pred HH--------HcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCCcccccCHHHHhhcCCCCcccCcEE-
Confidence 11 1124999999999999999999997778999999999999999983222221 223333222
Q ss_pred cCCCCeeEEEEccEEEEECCeeeec-cHHHHHHH
Q 012333 426 MRTENVVSVMCNGQWVMKNKKILLL-MRGRLFQL 458 (466)
Q Consensus 426 ~~~~~v~~v~v~G~~v~~~g~~~~~-~~~~~~~~ 458 (466)
..+|..||++|++|+++|+++.. ..|+++++
T Consensus 421 --~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~ 452 (459)
T PRK08323 421 --TGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKR 452 (459)
T ss_pred --eeeEEEEEECCEEEEECCEEeccCCCceEeeC
Confidence 24899999999999999998764 36887764
|
|
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=296.02 Aligned_cols=370 Identities=16% Similarity=0.168 Sum_probs=246.8
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc-
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI- 97 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~- 97 (466)
++++|+|++|++ +. ...+|.|++|+|++|++.... ...++||++|++|+|||||+|+|+..+..++.
T Consensus 2 ~~~~i~~~~i~~--~~----~~~~i~i~~g~I~~v~~~~~~------~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~ 69 (426)
T PRK07572 2 FDLIVRNANLPD--GR----TGIDIGIAGGRIAAVEPGLQA------EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLP 69 (426)
T ss_pred CcEEEECeEECC--CC----eeEEEEEECCEEEEecCCCCC------CcCceEeCCCCEEcccceehhhCcchhhccCCC
Confidence 568999999995 32 134899999999999875321 24579999999999999999999988765553
Q ss_pred --cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeec---CccCH---HHHHHHHHHhCCeEEeecc
Q 012333 98 --ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA---GGQHV---SEMAKAVELLGLRACLVQS 169 (466)
Q Consensus 98 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~---~~~~~---~~~~~~~~~~g~~~~~~~~ 169 (466)
....++.+|+. ........++.++.+......+.+++++|+|+++++ +.... ....+.-...+.+......
T Consensus 70 ~~~~~g~l~e~l~-~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (426)
T PRK07572 70 RVNASGTLLEGIA-LWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLV 148 (426)
T ss_pred CCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEE
Confidence 24556777772 222223346777888888889999999999999995 22221 2222222222222211111
Q ss_pred cccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCC--HHHHHHHHHHHHHcCCccceeccCCc
Q 012333 170 TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNAT--DRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
.. ...+ .+.. ....+..++.++ .+...+. ..++.....+ .+.++.++++|+++|+++++|+.+..
T Consensus 149 a~-~~~g---~~~~---~~~~~~~~~~l~----~g~d~iG--g~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~ 215 (426)
T PRK07572 149 AF-PQDG---VLRS---PGAVDNLERALD----MGVDVVG--GIPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESD 215 (426)
T ss_pred ec-cChh---hccC---ccHHHHHHHHHH----cCCCEEe--CCCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 11 0001 0000 011122222222 2222221 1233333333 38899999999999999999998766
Q ss_pred chhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-------hhHHHHHhcCCeEEECccchhhc----------
Q 012333 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAMRM---------- 310 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-------~~~~~~~~~g~~~~~~p~~~~~~---------- 310 (466)
......... ....+...++.+ +..+.|+.+++. +.++++++.|+.+++||.+++.+
T Consensus 216 ~~~~~~~~~------~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~~~~~~~~~ 288 (426)
T PRK07572 216 DPLSRHIET------LAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQGRHDTYPKR 288 (426)
T ss_pred ChhHHHHHH------HHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcCCCCCCCCC
Confidence 554332221 233445666665 788999988775 56999999999999999988654
Q ss_pred cCCccHHHHHHcCCcEEEccCCCC----CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 311 LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 311 ~~~~~~~~~~~~gi~~~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
.+..+++.+++.|+++++|||+.. .....++++.++.+....+.. . ...+.++++++|.+||++||
T Consensus 289 ~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~~~~~~e~~~~~~~~~~~~--------~--~~~l~~~l~~aT~~~A~~lg 358 (426)
T PRK07572 289 RGMTRVPELMAAGINVAFGHDCVMDPWYSLGSGDMLEVAHMGLHVAQMT--------G--QDAMRACFDAVTVNPARIMG 358 (426)
T ss_pred CCCcCHHHHHHCCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHcCC--------C--HHHHHHHHHHhhcchHHhhC
Confidence 356789999999999999999842 223467888877654432211 0 12356788899999999999
Q ss_pred CCCcccccccCCccCEEEEcC-CCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECC
Q 012333 387 WDNDIGSLEAGKKADMVVVDP-FSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445 (466)
Q Consensus 387 l~~~~G~i~~G~~ADlvv~d~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 445 (466)
+++ .| |++||.||||++|. + |.++. .. ..++..||++|++|++..
T Consensus 359 l~~-~g-i~~G~~ADlvl~d~~~-----p~e~i-~~------~~~~~~V~~~G~~v~~~~ 404 (426)
T PRK07572 359 LEG-YG-LEPGCNADLVLLQARD-----PIEAI-RL------RAARLAVIRRGKVIARTP 404 (426)
T ss_pred CCC-cC-CCCCCcCCEEEEeCCC-----HHHHH-Hh------cCCceEEEECCEEEeccC
Confidence 976 67 99999999999995 5 44432 11 257999999999998864
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=287.79 Aligned_cols=356 Identities=15% Similarity=0.172 Sum_probs=233.7
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
+++++|+|++|++.. .......+|+|++|+|++|++... + ...++||++|++|+|||||+|+|+... +.
T Consensus 2 ~~~~li~~~~i~~~~--~~~~~~~~i~i~~g~I~~i~~~~~-----~-~~~~viD~~g~~v~PGliD~H~H~~~~---g~ 70 (379)
T PRK12394 2 KNDILITNGHIIDPA--RNINEINNLRIINDIIVDADKYPV-----A-SETRIIHADGCIVTPGLIDYHAHVFYD---GT 70 (379)
T ss_pred CccEEEECcEEECCC--CCcccccEEEEECCEEEEEcCCCC-----C-CCCeEEECCCCEEECCEEEeeecCCCC---Cc
Confidence 568999999999543 223456799999999999987432 1 245899999999999999999998421 10
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHH---HHHHhCCeEEeecccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAK---AVELLGLRACLVQSTM 171 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~---~~~~~g~~~~~~~~~~ 171 (466)
....++ + ..++.+||||+++++... ...+.+ +..+.+++.++.....
T Consensus 71 -----------------~~~~~~-~---------~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~ 123 (379)
T PRK12394 71 -----------------EGGVRP-D---------MYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPP 123 (379)
T ss_pred -----------------ccccCH-H---------HHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecc
Confidence 001111 1 227899999999987432 212222 3556678887765554
Q ss_pred cCCC-CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 172 DCGE-GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
.... +..... .......++..++++++.... ..+++.+........+++.+.+.++.|+++++++++|+.+...+.
T Consensus 124 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~ 200 (379)
T PRK12394 124 GQTWSGYQENY--DPDNIDENKIHALFRQYRNVL-QGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPM 200 (379)
T ss_pred cccccCccccc--ChhHCCHHHHHHHHHHCcCcE-EEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccH
Confidence 2211 001000 000111244555555544321 122332222221245688999999999999999999997754321
Q ss_pred HHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC-----------hhhHHHHHhcCCeE-EECccchhhccCCccHHH
Q 012333 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-----------HTEIGLLSRAGVKV-SHCPASAMRMLGFAPIKE 318 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-----------~~~~~~~~~~g~~~-~~~p~~~~~~~~~~~~~~ 318 (466)
.+..+.+....+..|+.+.+ .+++..+++.|+.+ ..++.++. .......
T Consensus 201 ----------------~~~~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~s~~---~~~~~~~ 261 (379)
T PRK12394 201 ----------------KELVSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANGRSHF---DMNVARR 261 (379)
T ss_pred ----------------HHHHHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCCcccc---chHHHHH
Confidence 12233344445678887733 24667788889876 55655442 2244568
Q ss_pred HHHcCC-cEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccC
Q 012333 319 MLHADI-CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAG 397 (466)
Q Consensus 319 ~~~~gi-~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G 397 (466)
++++|+ ++++|||+.+++...+++..|.. .+.+.. +.+++++++++++|.|||+++|+++++|+|++|
T Consensus 262 ~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~--~~~~~~---------~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G 330 (379)
T PRK12394 262 AIANGFLPDIISSDLSTITKLAWPVYSLPW--VLSKYL---------ALGMALEDVINACTHTPAVLMGMAAEIGTLAPG 330 (379)
T ss_pred HHHCCCCceEEECCCCCCCcccCccchHHH--HHHHHH---------HcCCCHHHHHHHHHHHHHHHhCCCCCCCccCCC
Confidence 899995 89999999876543333333322 222211 135999999999999999999996568999999
Q ss_pred CccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECC
Q 012333 398 KKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445 (466)
Q Consensus 398 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 445 (466)
++|||+++|.+.... +.+|.....++......|..||++|++||++-
T Consensus 331 ~~ADl~~~~~~~~~~-~~~d~~g~~~~~~~~~~v~~t~v~G~~v~~~~ 377 (379)
T PRK12394 331 AFADIAIFKLKNRHV-EFADIHGETLTGTHVLVPQMTIKSGEILYRQI 377 (379)
T ss_pred CccCEEEEecCcCcc-eeccCCCCEEEeeeecceEEEEECCEEEEecC
Confidence 999999999985533 56777777777666678999999999999853
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=290.89 Aligned_cols=361 Identities=19% Similarity=0.173 Sum_probs=227.1
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
|++|+|++|+++.+ .....++|.|+||+|++|++... + .+.++||++|++|+|||||+|+|+.....
T Consensus 1 d~~i~n~~v~~~~~--~~~~~~~i~I~~g~I~~i~~~~~-----~-~~~~~iD~~G~~v~PG~iD~H~H~~~~~~----- 67 (415)
T cd01297 1 DLVIRNGTVVDGTG--APPFTADVGIRDGRIAAIGPILS-----T-SAREVIDAAGLVVAPGFIDVHTHYDGQVF----- 67 (415)
T ss_pred CEEEECCEEECCCC--CccccceEEEECCEEEEEecCCC-----C-CCCeEEECCCCEEccCEeeeeecCCcccc-----
Confidence 57999999996433 33456799999999999986432 1 25689999999999999999999843110
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-------------------------------
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------------------------- 148 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~------------------------------- 148 (466)
.. .....++.+||||++++...
T Consensus 68 -------------------~~--------~~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (415)
T cd01297 68 -------------------WD--------PDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWG 120 (415)
T ss_pred -------------------cC--------cchhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCC
Confidence 00 01234679999999885321
Q ss_pred --CHHHHHHHHHHh--CCeEEe--eccccc-CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccc--c
Q 012333 149 --HVSEMAKAVELL--GLRACL--VQSTMD-CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIM--N 219 (466)
Q Consensus 149 --~~~~~~~~~~~~--g~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 219 (466)
......+..... .+.... ...... ...|... .......+.+..+++++..+.|...++. ...+.+ .
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~---~~~~~~~~~~~~~l~~~al~~Ga~g~~~--~~~y~~~~~ 195 (415)
T cd01297 121 WATFAEYLDALEARPPAVNVAALVGHAALRRAVMGLDA---REATEEELAKMRELLREALEAGALGIST--GLAYAPRLY 195 (415)
T ss_pred CCCHHHHHHHHHhcCCCcCeeeccCcHHHHHHHhCcCC---CCCCHHHHHHHHHHHHHHHHCCCeEEEc--ccccCCccc
Confidence 011112222111 122110 000000 0000000 1123345566666666656655444443 222222 5
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh----------hh
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH----------TE 289 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~----------~~ 289 (466)
.+.+++.++++.++++|.++.+|+.+....... .....+...+..+.+..+.|...... +.
T Consensus 196 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~---------av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~ 266 (415)
T cd01297 196 AGTAELVALARVAARYGGVYQTHVRYEGDSILE---------ALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLAL 266 (415)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEECcccccHHH---------HHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHH
Confidence 788999999999999999999999764311110 12334444445567889999987765 56
Q ss_pred HHHHHhcCCeEE--ECccchhhccCCccHHHHHHcCCcEEEccCCCCCCC-CCCHHHHHHHHHHHhcccccccCCCCCCC
Q 012333 290 IGLLSRAGVKVS--HCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKGREVFANGTTDPA 366 (466)
Q Consensus 290 ~~~~~~~g~~~~--~~p~~~~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (466)
++++++.|..+. +||+.... ..+++++++. ..++++||+.+... ....+.. ...+..... ....
T Consensus 267 i~~a~~~G~~v~~e~~p~~~~~---~~~~~~l~~~-~~~~i~SDh~~~~~~~~~~~~~--~~~~l~~~~-------~~~~ 333 (415)
T cd01297 267 IEAARAEGLQVTADVYPYGAGS---EDDVRRIMAH-PVVMGGSDGGALGKPHPRSYGD--FTRVLGHYV-------RERK 333 (415)
T ss_pred HHHHHHhCCcEEEEeCCCCCCc---HHHHHHHHcC-CCceeeeCCCcCCCCCcchhCC--HHHHHHHHh-------cccC
Confidence 677777666654 77754321 4567788877 89999999987420 0011111 111111100 0112
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 367 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 367 ~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
.+|++++++++|.+||+++|+. ++|+|++|++|||||||++.+...+..+ .+......|..||++|++||++++
T Consensus 334 ~~~~~~~~~~~t~~pA~~~gl~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~-----~~~~~~~~v~~viv~G~~v~~~~~ 407 (415)
T cd01297 334 LLSLEEAVRKMTGLPARVFGLA-DRGRIAPGYRADIVVFDPDTLADRATFT-----RPNQPAEGIEAVLVNGVPVVRDGA 407 (415)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC-CCceeCCCCCCCEEEEcccccccccchh-----hhccCCCCceEEEECCEEEEECCE
Confidence 3999999999999999999996 4699999999999999998654443322 112234679999999999999999
Q ss_pred eeeccHH
Q 012333 447 ILLLMRG 453 (466)
Q Consensus 447 ~~~~~~~ 453 (466)
+++..+|
T Consensus 408 ~~~~~~G 414 (415)
T cd01297 408 FTGARPG 414 (415)
T ss_pred ECCCCCC
Confidence 9876655
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=289.74 Aligned_cols=350 Identities=22% Similarity=0.289 Sum_probs=229.3
Q ss_pred EEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc-----cCCCCchHhhhhc---cc--
Q 012333 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR---IW-- 112 (466)
Q Consensus 43 v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~-----~~~~~~~~~~~~~---~~-- 112 (466)
|+|+||+|++|++..+.++. ...+.++||++|++|+|||||+|+|++.+..++. ..+..+.+|+... .|
T Consensus 1 i~i~~g~I~~ig~~~~~~~~-~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAP-GPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTV 79 (371)
T ss_pred CEEECCEEEEEeCchhcccc-cCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHH
Confidence 57899999999986432110 0125579999999999999999999987655432 1455677887542 22
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhcCceeeeecC--ccC---HHHHHHHHHHhCCe--EEeecccccCCCCCCcccccCC
Q 012333 113 PYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQH---VSEMAKAVELLGLR--ACLVQSTMDCGEGLPASWAVRT 185 (466)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~--~~~---~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.....+++++.+......+..++++|||++.+.. ... .....++..+.+.+ ..+...+.. +..++.... .
T Consensus 80 ~~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~-~~~~p~~~~--~ 156 (371)
T cd01296 80 RATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLG-AHAVPPEYK--G 156 (371)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeee-cccCCcccC--C
Confidence 4445677788888888899999999999998731 111 12234444443332 111111110 111221111 0
Q ss_pred hHHHHH-HHHHHHHHhc-cCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCch
Q 012333 186 TDDCIQ-SQKELYAKHH-HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT 263 (466)
Q Consensus 186 ~~~~~~-~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 263 (466)
...... ...+.++.+. ......++. .+.. ...+.+.+.++++.|+++|+++.+|+.+..... .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~------------~ 221 (371)
T cd01296 157 REEYIDLVIEEVLPAVAEENLADFCDV-FCEK--GAFSLEQSRRILEAAKEAGLPVKIHADELSNIG------------G 221 (371)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEE-eecC--CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC------------H
Confidence 011111 1122333322 122233333 2222 234578899999999999999999997643211 1
Q ss_pred HHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCC-CCH
Q 012333 264 VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR-MSI 341 (466)
Q Consensus 264 ~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~-~~~ 341 (466)
.+.....+ ...+.|+.++++++++++++.|+.+++||.+++.. ...++++++++.|+++++|||+.+.... .++
T Consensus 222 ~~~~~~~g----~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~~~~~~l~~~Gv~v~lgsD~~p~~~~~~~l 297 (371)
T cd01296 222 AELAAELG----ALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPGSSPTSSM 297 (371)
T ss_pred HHHHHHcC----CCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCCCCHHHHHHCCCcEEEecCCCCCCChHHHH
Confidence 11111222 23478999999999999999999999999988765 4478999999999999999998543211 123
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccc
Q 012333 342 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 421 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~ 421 (466)
+..+..+... .+++++++++++|.|||+++|+++++|+|++|++|||||+|.+++..
T Consensus 298 ~~~~~~~~~~--------------~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~--------- 354 (371)
T cd01296 298 PLVMHLACRL--------------MRMTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEH--------- 354 (371)
T ss_pred HHHHHHHHHh--------------cCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCchHh---------
Confidence 4444433211 24999999999999999999998789999999999999999994322
Q ss_pred eecccCCCCeeEEEEcc
Q 012333 422 LVYCMRTENVVSVMCNG 438 (466)
Q Consensus 422 ~~~~~~~~~v~~v~v~G 438 (466)
+++.....+|..||++|
T Consensus 355 ~~~~~~~~~v~~v~~~G 371 (371)
T cd01296 355 LAYRFGVNLVEYVIKNG 371 (371)
T ss_pred hhhhcCCCCceEEEeCc
Confidence 22223346799999998
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=284.23 Aligned_cols=369 Identities=17% Similarity=0.174 Sum_probs=235.8
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.+++|+|++|+++ . ..+|.|++|+|++|++.... + ++.++||++|++|+|||||+|+|+........
T Consensus 1 ~~~~~i~~~~i~~~--~-----~~~v~i~~g~i~~i~~~~~~----~-~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~ 68 (391)
T PRK05985 1 MTDLLFRNVRPAGG--A-----AVDILIRDGRIAAIGPALAA----P-PGAEVEDGGGALALPGLVDGHIHLDKTFWGDP 68 (391)
T ss_pred CCCEEEECcEECCC--C-----eeEEEEECCEEEEecCCCCC----C-CCCcEEECCCCEEecceEeeEEccCccccCCc
Confidence 46789999999953 1 34999999999999986432 1 25579999999999999999999975433221
Q ss_pred c----CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-------cCHHHHHHHHHHhCCeEEe
Q 012333 98 A----DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-------QHVSEMAKAVELLGLRACL 166 (466)
Q Consensus 98 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-------~~~~~~~~~~~~~g~~~~~ 166 (466)
. ....+.+++....- ...++..+.+..+...+.+++++|+|+++++-. .......++.....-+.
T Consensus 69 ~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (391)
T PRK05985 69 WYPNEPGPSLRERIANERR--RRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLI-- 144 (391)
T ss_pred cccCCCCCCHHHHHHHHHH--hhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcc--
Confidence 1 12223333321100 123445566777778889999999999977431 11334444433321111
Q ss_pred ecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
...... ++......... ..+.+++..+.+.+ +...+.++.....+++.+.+++++|+++|+++++|+.+.
T Consensus 145 ~~~~v~----~~~~g~~~~~~-----~~~ll~~~l~~g~~-~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 145 DIQIVA----FPQSGVLSRPG-----TAELLDAALRAGAD-VVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred cEEEEe----ccCccccCCcC-----HHHHHHHHHHcCCC-EEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCC
Confidence 111111 11110000000 11333433333322 333344556677788999999999999999999999876
Q ss_pred cchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC---h----hhHHHHHhcCCeEEECccchhhccCCccHHHH
Q 012333 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---H----TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEM 319 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~---~----~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~ 319 (466)
......... ...+.....+. ..+..+.|+..++ + +.++++++.|+.+++|+... .+.++++++
T Consensus 215 ~d~~~~~~~------~~~e~~~~~g~-~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~---~~~~~~~~l 284 (391)
T PRK05985 215 GELGAFQLE------RIAARTRALGM-QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTNAPGS---VPVPPVAAL 284 (391)
T ss_pred CCccHHHHH------HHHHHHHHhCC-CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCCC---CCCCCHHHH
Confidence 543211111 01222223332 2357899988763 3 45789999999999886543 677899999
Q ss_pred HHcCCcEEEccCCCCC----CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccc
Q 012333 320 LHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 395 (466)
Q Consensus 320 ~~~gi~~~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~ 395 (466)
++.|+++++|||+... ....+++..++.+....+.. . .-++.++|+++|.++|+++|+++ ++|+
T Consensus 285 ~~~Gv~v~lGtD~~~~~~~p~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~al~~~T~~~A~~lg~~~--~~l~ 352 (391)
T PRK05985 285 RAAGVTVFGGNDGIRDTWWPYGNGDMLERAMLIGYRSGFR--------T--DDELAAALDCVTHGGARALGLED--YGLA 352 (391)
T ss_pred HHCCCeEEEecCCCCCCCcCCCCCcHHHHHHHHHHHHccC--------C--hHHHHHHHHHHcchhHHHhCCcc--cCCC
Confidence 9999999999998521 12357787776554433211 0 12468999999999999999964 4599
Q ss_pred cCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECC
Q 012333 396 AGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445 (466)
Q Consensus 396 ~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 445 (466)
+||.||||++|.+.+...+. ....+..||++|++||++|
T Consensus 353 ~G~~ADlvvld~~~~~~~~~-----------~~~~~~~v~~~G~~v~~~~ 391 (391)
T PRK05985 353 VGARADFVLVDAETVAEAVV-----------AVPVRRLVVRGGRIVARDG 391 (391)
T ss_pred CCCcCCEEEECCCCHHHHHh-----------hCCcceEEEECCEEEecCC
Confidence 99999999999984321111 1245678999999999985
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=279.70 Aligned_cols=372 Identities=20% Similarity=0.238 Sum_probs=228.9
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCc-hhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSA-DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~-~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
..+++.+++.++. ...++++.|+|+||||++|++.. +. | ++.++||++|++|+|||||+|+|+....-++.
T Consensus 10 ~~~~~~~~~~~~~---~~~i~~~~v~i~~GkI~~vg~~~~~~----~-~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~ 81 (406)
T COG1228 10 AMLATLAGRGLPG---LGIIEDGAVLIEDGKIVAVGPEEIDI----P-AGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGG 81 (406)
T ss_pred hhheeeccccCCC---cceeecceEEEECCEEEEecCcccCC----C-CCCeEEeCCCCEEccceeeccccccccCCccc
Confidence 4577888888753 34456699999999999999873 22 2 36799999999999999999999976443332
Q ss_pred cC-----CCCchHhhhhccccccCC---C---ChhHHHHHHHHHHHHHHhcCceeeeecCccCHHH-----HHHHHHHhC
Q 012333 98 AD-----DVDLMTWLHDRIWPYESN---M---TEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSE-----MAKAVELLG 161 (466)
Q Consensus 98 ~~-----~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~-----~~~~~~~~g 161 (466)
.. ..++.+. ....+..... . .+..........+..++.+|+|+.....+..+.. ..+......
T Consensus 82 ~~~~~~~~~~~~~i-~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~ 160 (406)
T COG1228 82 EFELREAGASYTEI-LAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLK 160 (406)
T ss_pred hhhhcccCccHHHH-HHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhcc
Confidence 11 1112111 1111111111 1 1111222344456778889998875543322211 111111111
Q ss_pred --CeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCcc
Q 012333 162 --LRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239 (466)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 239 (466)
.......... ...+.+.... .......+.....++.....+ ..+..-........+++++.++++.+++.++++
T Consensus 161 ~~~~~~~~~t~~-~~~~~~~~~~-~~r~~~~~g~~~~i~~~a~~~--l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v 236 (406)
T COG1228 161 ESRPVAVGSTPL-AAHGVPEERK-ATREAYVAGARLLIKIVATGG--LASFVDAFCEGGQFSPEEIRAVLAAALKAGIPV 236 (406)
T ss_pred ccccccccCccc-cccCCccccc-chHHHHHHHHHHHHHHHHhcc--ccchhhccccccccCHHHHHHHHHHHHHCCCce
Confidence 0011111111 1112222221 122222222222233332211 111101123345678888999999999999999
Q ss_pred ceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHh--cCCe-EEECccchhhc--cCCc
Q 012333 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR--AGVK-VSHCPASAMRM--LGFA 314 (466)
Q Consensus 240 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~--~g~~-~~~~p~~~~~~--~~~~ 314 (466)
.+|+....... .+ -.++ ...+.|+.+++.+..+.+++ .|+. .++.|...... ....
T Consensus 237 ~~HA~~~~g~~--------------~A-~~~g----~~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~ 297 (406)
T COG1228 237 KAHAHGADGIK--------------LA-IRLG----AKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYK 297 (406)
T ss_pred EEEecccchHH--------------HH-HHhC----cceehhhhhcCHhHHHHHhhccCCCccccccchhhhhhhcccch
Confidence 99997754111 11 1111 12477999999999999999 7762 45555544433 5567
Q ss_pred cHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 315 ~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
+++.+++.|++++++||+++..+..++...|..+.. .+||++|||+++|.|||++||+.++.|+|
T Consensus 298 ~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~---------------~gmtp~EaL~a~T~naA~alG~~~~~Gsl 362 (406)
T COG1228 298 PARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVR---------------LGMTPEEALKAATINAAKALGLADKVGSL 362 (406)
T ss_pred hHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHHHcCCccccccc
Confidence 899999999999999999887532233344443322 14999999999999999999999999999
Q ss_pred ccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 395 EAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 395 ~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
++||+|||||||.+ |..+ +.|.....++..||++|+++++.+.
T Consensus 363 e~Gk~ADlvv~~~d-----p~~~----i~y~~~~~~v~~v~k~G~~~~~~~~ 405 (406)
T COG1228 363 EPGKDADLVVWDGD-----PLAD----IPYFLGLNKVEAVIKDGKVVYERGS 405 (406)
T ss_pred cCCCccCEEEEcCC-----Chhh----ccccccCCceEEEEECCEEeecCCC
Confidence 99999999999999 3333 2333345799999999999998653
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=272.36 Aligned_cols=379 Identities=17% Similarity=0.152 Sum_probs=235.0
Q ss_pred cccceEEEEccEEEeecCCc--------ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeeccccccc
Q 012333 16 GSSSTMILHNAVIVTMDKES--------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~--------~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~ 87 (466)
.+...++|+|+++-+..... .-....+|.|+||||++|++.... + .+.++||++|++|+|||||+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~----~-~~~~~id~~g~~v~Pg~id~H~ 82 (438)
T PRK07583 8 PESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA----P-DELPAVDLKGRMVWPCFVDMHT 82 (438)
T ss_pred CCCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC----C-CCCceecCCCCcccCCccccee
Confidence 34567899999864422111 122456999999999999986431 1 2668999999999999999999
Q ss_pred CCcccccccc--cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeee---c-Cc---cCHHHHHHHHH
Q 012333 88 HTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE---A-GG---QHVSEMAKAVE 158 (466)
Q Consensus 88 H~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~---~-~~---~~~~~~~~~~~ 158 (466)
|+........ .....+.+.+..........++..+...........++..|+|+++. . .. .....+.+...
T Consensus 83 Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~ 162 (438)
T PRK07583 83 HLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELRE 162 (438)
T ss_pred ccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHH
Confidence 9987654432 12222434432221111223344555555667788899999995544 2 11 11222223333
Q ss_pred HhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCc
Q 012333 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (466)
Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 238 (466)
...-+............+.. . . .. .+..+.+.+ .+ +.+.. ........++.+.+++++|+++|++
T Consensus 163 ~~~~~~~~~~v~~~p~~~~~----~-~--~~-~eL~~~v~~---~~-gv~g~---~~~~~~~~d~~l~~i~~lA~~~G~~ 227 (438)
T PRK07583 163 AWAGRIALQAVSLVPLDAYL----T-D--AG-ERLADLVAE---AG-GLLGG---VTYMNPDLDAQLDRLFRLARERGLD 227 (438)
T ss_pred HhhccCeEEEEEecChhhcc----C-c--hH-HHHHHHHHH---cC-CEEeC---CCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 22111111111100000111 0 1 11 222222222 11 22211 1111122567899999999999999
Q ss_pred cceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC-------hhhHHHHHhcCCeEEECccchhhc-
Q 012333 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-------HTEIGLLSRAGVKVSHCPASAMRM- 310 (466)
Q Consensus 239 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-------~~~~~~~~~~g~~~~~~p~~~~~~- 310 (466)
+.+|+.+........... ..+.....+. ..+.++.|+..++ .+.++++++.|+.+++||.+++..
T Consensus 228 v~vH~~E~~~~~~~~l~~------~~~~~~~~G~-~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P~~~~~l~ 300 (438)
T PRK07583 228 LDLHVDETGDPASRTLKA------VAEAALRNGF-EGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSLPMCNLYLQ 300 (438)
T ss_pred cEEeECCCCCchHHHHHH------HHHHHHHhCC-CCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhc
Confidence 999997765433221110 1222223333 3468899999887 477999999999999999987643
Q ss_pred ----------cCCccHHHHHHcCCcEEEccCCCC--CC--CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 311 ----------LGFAPIKEMLHADICVSLGTDGAP--SN--NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 311 ----------~~~~~~~~~~~~gi~~~~gsD~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
.+..+++++++.|+++++|||+.. .. ...++++.+..+....+. +.++.+++++
T Consensus 301 ~~~~~~~p~~~~~~~v~~l~~aGV~valGtD~~~d~~~p~g~~~~~~~~~~a~~~~~~------------~~~~~~al~~ 368 (438)
T PRK07583 301 DRQPGRTPRWRGVTLVHELKAAGIPVAVASDNCRDPFYAYGDHDMLEVFREAVRILHL------------DHPYDDWPAA 368 (438)
T ss_pred CCCcCCCCCCCCcchHHHHHHCCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhc------------CCcHHHHHHH
Confidence 245689999999999999999842 11 235677777665433211 2689999999
Q ss_pred HhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECC
Q 012333 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445 (466)
Q Consensus 377 ~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 445 (466)
+|.+||+++|+++ +|+|++|+.|||||+|.+ +..+... +...++.||++|++|+...
T Consensus 369 ~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~-----~~~~~~~------~~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 369 VTTTPADIMGLPD-LGRIAVGAPADLVLFKAR-----SFSELLS------RPQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred HhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCC-----CHHHHHh------cCCCccEEEECCEEecccC
Confidence 9999999999975 899999999999999999 3333211 1256888999999887653
|
|
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=278.47 Aligned_cols=383 Identities=16% Similarity=0.140 Sum_probs=221.8
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
.++.|++|+|++|++.++ . ..++|+|+||+|++|++....+.. .++.++||++|++|+|||||+|+|+...
T Consensus 41 ~~~~~~vi~~~~vv~~~~---~-~~~~v~i~dG~I~~I~~~~~~~~~--~~~~~~ida~G~~v~PG~ID~H~H~~~~--- 111 (505)
T PLN02795 41 LPWPHFVLYSKRVVTPAG---V-IPGAVEVEGGRIVSVTKEEEAPKS--QKKPHVLDYGNAVVMPGLIDVHVHLNEP--- 111 (505)
T ss_pred ccccceEEECCEEEECCC---e-EEEEEEEECCEEEEecCccccccc--cCCCEEEECCCCEEecCEEecccCcCCC---
Confidence 345899999999997432 2 357999999999999874321100 0246899999999999999999998320
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-cC----HHHHHHHHHHhCCeEEeeccc
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QH----VSEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~~----~~~~~~~~~~~g~~~~~~~~~ 170 (466)
. ... ........+.++.+||||+.+|+. .. .....+...+. .....+
T Consensus 112 --------------------~-~~~---~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~----~~~~~~ 163 (505)
T PLN02795 112 --------------------G-RTE---WEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEA----AKGKLY 163 (505)
T ss_pred --------------------C-ccc---hhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHH----hccCce
Confidence 0 000 112233456688899999999972 11 11212211111 111111
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccc---cCCHHHHHHHHHHHHHcCCccceeccCCc
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIM---NATDRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
.+.+ +..... ...... .+.+.++.+.+...+++++.+++.+ ..+++.+.++++.++++|.++++|+.+..
T Consensus 164 vd~~--~~~~~~-~~~~~~----~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~ 236 (505)
T PLN02795 164 VDVG--FWGGLV-PENAHN----ASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVS 236 (505)
T ss_pred eeee--ceeccc-CcchhH----HHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChh
Confidence 1111 111000 001111 2223333333443467666554433 46788999999999999999999997754
Q ss_pred chhHHHHhhcC--------CCCc-------hHHHHhhhccC-------CCCeeEEEeecC--ChhhHHHHHhcC--CeEE
Q 012333 248 YENQVVMDTRK--------VDHG-------TVTFLDKIEFL-------QNNLLSAHTVWV--NHTEIGLLSRAG--VKVS 301 (466)
Q Consensus 248 ~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~-------~~~~~~~H~~~~--~~~~~~~~~~~g--~~~~ 301 (466)
..........+ .... ....+...... +.+..+.|.... +-+.++.+++.| +.+.
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~E 316 (505)
T PLN02795 237 PVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVE 316 (505)
T ss_pred HhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEE
Confidence 21100000000 0000 01112222222 445555555432 123455566667 5566
Q ss_pred ECccchhhc--------------------cCCccHHHHHHcCCcEEEccCCCCCCCCCC------HHHH--------HHH
Q 012333 302 HCPASAMRM--------------------LGFAPIKEMLHADICVSLGTDGAPSNNRMS------IVDE--------MYL 347 (466)
Q Consensus 302 ~~p~~~~~~--------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~------~~~~--------~~~ 347 (466)
+||+.-..- .....+++.+..|...+++|||.|+....+ ++.. ...
T Consensus 317 v~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l 396 (505)
T PLN02795 317 TCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVL 396 (505)
T ss_pred eChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHH
Confidence 788643200 112345567889999999999998752211 1110 111
Q ss_pred HHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCCc---------CC
Q 012333 348 ASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVPV---------HD 417 (466)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~~---------~~ 417 (466)
..+.... ...++|++++++++|.|||+++|+ +++|.|++|++|||||+|.+ .|+..+. .+
T Consensus 397 ~~~~~~~---------~~~~l~l~~~v~~~s~~pA~~~gl-~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~s 466 (505)
T PLN02795 397 PATWTAG---------RAYGLTLEQLARWWSERPAKLAGL-DSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLS 466 (505)
T ss_pred HHHHHHH---------HHcCCCHHHHHHHHHHHHHHHhCC-CCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcC
Confidence 1111110 123599999999999999999999 56899999999999999987 3322211 12
Q ss_pred cccceecccCCCCeeEEEEccEEEEECCeeeeccHHHH
Q 012333 418 RITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRL 455 (466)
Q Consensus 418 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~ 455 (466)
|+... .-..+|..|+++|++||++|+++....|++
T Consensus 467 p~~G~---~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~ 501 (505)
T PLN02795 467 PYLGT---KLSGKVIATFVRGNLVFLEGKHAKQACGSP 501 (505)
T ss_pred CCCCe---EEEeEEEEEEECCEEEEECCeEcCCCCCeE
Confidence 22222 113579999999999999999864444543
|
|
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=267.60 Aligned_cols=340 Identities=17% Similarity=0.184 Sum_probs=205.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh--h-----hhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~--~-----~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
..|++|+|++|+++. .. +..++|.|+||+|++|++..... . ...+.++++||++|++|+|||||+|+|+.
T Consensus 67 ~~DlVI~Ng~ViD~~--~g-i~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~ 143 (572)
T PRK13309 67 VLDLVITNVTIVDAR--LG-VIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLI 143 (572)
T ss_pred cCCEEEECeEEEcCC--CC-EEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccC
Confidence 679999999999532 22 35689999999999999754210 0 01112478999999999999999999972
Q ss_pred ccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc------------c---CHHHHHH
Q 012333 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG------------Q---HVSEMAK 155 (466)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~------------~---~~~~~~~ 155 (466)
. +.. .+.++.+||||++.+|. . .+..+.+
T Consensus 144 ~----------------------------P~~--------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~ 187 (572)
T PRK13309 144 S----------------------------PQQ--------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLR 187 (572)
T ss_pred C----------------------------cch--------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 1 111 13488999999996431 1 1223333
Q ss_pred HHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 012333 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (466)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (466)
..+...+...+.. .+.. .. ..+ +.+..+.+... +..+..+..+++.+.++++.++++
T Consensus 188 ~a~~~pvn~g~~g------kg~~------~~---~~~----l~el~~aGa~g----fk~~~d~g~t~~~L~~aLe~A~~~ 244 (572)
T PRK13309 188 SIEGLPVNVGILG------KGNS------YG---RGP----LLEQAIAGVAG----YKVHEDWGATAAALRHALRVADEV 244 (572)
T ss_pred HhccCCcCEEEEc------CCCC------CC---HHH----HHHHHhcCcEE----EEecCcCCcCHHHHHHHHHHHHhc
Confidence 3333333221111 1110 00 111 11222222222 223333446888999999999999
Q ss_pred CCccceeccCCcc--hhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCe--------------
Q 012333 236 KTGIHMHVAEIPY--ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK-------------- 299 (466)
Q Consensus 236 ~~~v~~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~-------------- 299 (466)
+.++.+|+..... ..+.... .++.++++.++..+..+.+ .++.++.....++.
T Consensus 245 gv~VaiH~d~lnE~g~vE~~~a--a~~grpih~~H~~Gagggh---------apd~~~~~~~~~~~~~st~pt~p~~~~~ 313 (572)
T PRK13309 245 DIQVAVHTDSLNECGYVEDTID--AFEGRTIHTFHTEGAGGGH---------APDIIKVASQTNVLPSSTNPTLPYGVNS 313 (572)
T ss_pred CCEEEEeCCccccchhHHHHHH--HhCCCceeeeeccCcccCC---------chhHHHhcCCCCcccCCCCCCCCCcccc
Confidence 9999999754322 1111111 1112233333332222110 01111111111111
Q ss_pred -------EEECcc-------------chhhccCCccHHHHHHcCCcEEEccCCCCCCC-CCCHHHHHHHHHHHhcccccc
Q 012333 300 -------VSHCPA-------------SAMRMLGFAPIKEMLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKGREVF 358 (466)
Q Consensus 300 -------~~~~p~-------------~~~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 358 (466)
+.+|.. +..+....++++.+++.|+.+++|||++..+. ..+++..++.+..+...+...
T Consensus 314 ~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~~~p~~~iq~Av~rk~~~g~l 393 (572)
T PRK13309 314 QAELFDMIMVCHNLNPNVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRVGENWLRAIQTADAMKAARGKL 393 (572)
T ss_pred hHhhhchhhhhccCCCCCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCCcccHHHHHHHHHHHHhccCCC
Confidence 111111 00122456889999999999999999985322 457788888777654322221
Q ss_pred cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEcc
Q 012333 359 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438 (466)
Q Consensus 359 ~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 438 (466)
.......+.+++.++|+++|.|||+++|+++++|+|++||.||||||+++.|. .++..||++|
T Consensus 394 ~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f~-----------------~~~~~vi~~G 456 (572)
T PRK13309 394 PEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFFG-----------------AKPKMVIKGG 456 (572)
T ss_pred CccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhcC-----------------CCccEEEECC
Confidence 11111235699999999999999999999999999999999999999998442 4678999999
Q ss_pred EEEEEC-Cee
Q 012333 439 QWVMKN-KKI 447 (466)
Q Consensus 439 ~~v~~~-g~~ 447 (466)
++||.. |..
T Consensus 457 ~iv~~~~gd~ 466 (572)
T PRK13309 457 MINWAAMGDP 466 (572)
T ss_pred EEEEecCCCc
Confidence 999987 543
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=276.43 Aligned_cols=383 Identities=16% Similarity=0.189 Sum_probs=225.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
++|++|+|++|+++++ . ..++|+|+||+|++|++.. + .+.++||++|++|+|||||+|+|+......
T Consensus 3 ~~d~~i~~~~v~~~~~---~-~~~~i~I~dg~I~~i~~~~------~-~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~-- 69 (477)
T PRK13404 3 AFDLVIRGGTVVTATD---T-FQADIGIRGGRIAALGEGL------G-PGAREIDATGRLVLPGGVDSHCHIDQPSGD-- 69 (477)
T ss_pred CCcEEEECCEEEcCCC---c-eEEEEEEECCEEEEecCCC------C-CCCeEEECCCCEEecCEEEeEEcCCccccC--
Confidence 4688999999996432 2 3579999999999998642 1 356899999999999999999998431100
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHH-HhCCeEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVE-LLGLRACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~-~~g~~~~~~~~~~~ 172 (466)
.....+ ......+.++.+|||++++++.. ......+... ...-+........
T Consensus 70 ------------------~~~~~e----~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~- 126 (477)
T PRK13404 70 ------------------GIMMAD----DFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFH- 126 (477)
T ss_pred ------------------Cccccc----hHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEE-
Confidence 000111 12234456789999999997632 1222222221 1111111111000
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHH
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 252 (466)
. +... .... ...+.++.+.+.+...++++..... ...+++.+.++++.++++|.++.+|+.+.......
T Consensus 127 ~--~~~~-----~~~~---~~~~~v~~l~~~G~~~iKi~~~~~~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~ 195 (477)
T PRK13404 127 L--IVAD-----PTEE---VLTEELPALIAQGYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWL 195 (477)
T ss_pred E--EecC-----CChh---hHHHHHHHHHHcCCCEEEEEecCCC-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 0 0000 0111 1112234444555667777653222 35677889999999999999999999764432100
Q ss_pred HHh--hcC--------CCCc-------hHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECccchhhc--
Q 012333 253 VMD--TRK--------VDHG-------TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCPASAMRM-- 310 (466)
Q Consensus 253 ~~~--~~~--------~~~~-------~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p~~~~~~-- 310 (466)
... ..+ .... ....+......+.+..+.|...- +-+.++.+++.|.. +.+||+....-
T Consensus 196 ~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~ 275 (477)
T PRK13404 196 TKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAE 275 (477)
T ss_pred HHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHH
Confidence 000 000 0000 01122222234445555555431 12455666666754 45777643200
Q ss_pred ---------------------cCCccHHHHHHcCCcEEEccCCCCCCCCC-----------CHH--------HHHHHHHH
Q 012333 311 ---------------------LGFAPIKEMLHADICVSLGTDGAPSNNRM-----------SIV--------DEMYLASL 350 (466)
Q Consensus 311 ---------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~-----------~~~--------~~~~~~~~ 350 (466)
.....+++.+..|...+++|||.|+.... +++ -++....+
T Consensus 276 ~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~l 355 (477)
T PRK13404 276 DLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLL 355 (477)
T ss_pred HhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHH
Confidence 11235567889999999999999874210 111 11222222
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCC-CCCC-------CcCCcccce
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMV-------PVHDRITSL 422 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~-~~~~-------~~~~~~~~~ 422 (466)
+++.. ....+|++++++++|.+||+++|+.+++|+|++|++||||++|.+. ++.. +..+|+..+
T Consensus 356 l~~~v--------~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvivd~~~~~~v~~~~~~~~~~~sp~~g~ 427 (477)
T PRK13404 356 FSEGV--------VKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYTPYEGM 427 (477)
T ss_pred HHHHH--------HcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEEcCCccEEEchHHhcccCCCCcccce
Confidence 22211 1224999999999999999999997678999999999999999983 2211 122343333
Q ss_pred ecccCCCCeeEEEEccEEEEECCeeeec-cHHHHHHH
Q 012333 423 VYCMRTENVVSVMCNGQWVMKNKKILLL-MRGRLFQL 458 (466)
Q Consensus 423 ~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~~~~~~~ 458 (466)
.+ ..+|..||++|++||++|+++.. ..|+++++
T Consensus 428 ~~---~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~ 461 (477)
T PRK13404 428 RV---TGWPVTVLSRGRVVVEDGELVAERGSGQFLAR 461 (477)
T ss_pred EE---eeeEEEEEECCEEEEECCEEecCCCceeEecC
Confidence 22 25788999999999999998743 35777654
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=270.09 Aligned_cols=372 Identities=17% Similarity=0.192 Sum_probs=214.3
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
|++|+|++|+++++ ...++|.|+||+|++|++... + .+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~~----~~~~~v~i~dg~I~~i~~~~~-----~-~~~~~id~~g~~v~PG~ID~H~H~~~~~------ 64 (443)
T TIGR03178 1 DLIIRGGRVILPNG----EREADVGVKGGKIAAIGPDIL-----G-PAAKIIDAGGLVVFPGVVDTHVHINEPG------ 64 (443)
T ss_pred CEEEECcEEECCCC----ceEEEEEEECCEEEEeeCCCC-----C-CCCeEEECCCCEEeccEeccccccCCCC------
Confidence 68999999997543 245799999999999987421 1 3568999999999999999999984210
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-cc--C---HHHHHHHHHHhCCeEEeecccccC
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ--H---VSEMAKAVELLGLRACLVQSTMDC 173 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~--~---~~~~~~~~~~~g~~~~~~~~~~~~ 173 (466)
....+ ......+.++++|||++.+++ .. . ...+....+............. .
T Consensus 65 ------------------~~~~~---~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~-~ 122 (443)
T TIGR03178 65 ------------------RTEWE---GFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFW-G 122 (443)
T ss_pred ------------------ccccc---hHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEE-e
Confidence 00001 122234568999999999986 21 1 1111111111111111111111 0
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecc---cccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
+... .. .+.+..+.+.+...++++++..+ ....+.+.+.++++.++++|.++.+|+.+.....
T Consensus 123 --~~~~--------~~----~~~i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~ 188 (443)
T TIGR03178 123 --GLVP--------YN----LDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITS 188 (443)
T ss_pred --ccCC--------CC----HHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHH
Confidence 0110 11 11233344444456666655432 2356788899999999999999999975432211
Q ss_pred HHHH--hhcC-------C-CCc-------hHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCeEE--ECccchh--
Q 012333 251 QVVM--DTRK-------V-DHG-------TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKVS--HCPASAM-- 308 (466)
Q Consensus 251 ~~~~--~~~~-------~-~~~-------~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~~--~~p~~~~-- 308 (466)
.... ...+ . ... ....+...+..+.+..+.|...- +-+.++.+++.|+.+. +||+...
T Consensus 189 ~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~ 268 (443)
T TIGR03178 189 ALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLT 268 (443)
T ss_pred HHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEECccceEec
Confidence 1100 0000 0 000 11122222223334444444321 1244556666675544 4776421
Q ss_pred ----hc--------------cCCccHHHHHHcCCcEEEccCCCCCCCC----CCHHHH--------HHHHHHHhcccccc
Q 012333 309 ----RM--------------LGFAPIKEMLHADICVSLGTDGAPSNNR----MSIVDE--------MYLASLINKGREVF 358 (466)
Q Consensus 309 ----~~--------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~----~~~~~~--------~~~~~~~~~~~~~~ 358 (466)
.. .....+++.++.|...+++|||.|.... .+++.. ..........
T Consensus 269 ~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~---- 344 (443)
T TIGR03178 269 AEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKRAGDFFKAWGGIAGLQSTLDVMFDEA---- 344 (443)
T ss_pred HHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHHcCcCChhhCCCCeeEHHHhHHHHHHHH----
Confidence 00 0112345568889999999999876421 111111 0011111100
Q ss_pred cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecccCCCC
Q 012333 359 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYCMRTEN 430 (466)
Q Consensus 359 ~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~~~~~~ 430 (466)
....+++++++++++|.|||+++|+ +++|+|++|++|||||+|.+ .|...+ ..+|+....+ ..+
T Consensus 345 ----~~~~~l~~~~~~~~~t~~pA~~~g~-~~~G~l~~G~~Ad~vi~d~~~~~~~~~~~~~~~~~~~p~~g~~~---~g~ 416 (443)
T TIGR03178 345 ----VQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFVDPDESYTLTPDDLYYRHKVSPYVGRTI---GGR 416 (443)
T ss_pred ----HHhcCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcCCEEEEcCCCcEEEcHHHhhhcCCCCCcCCcEE---eeE
Confidence 0123499999999999999999999 56799999999999999996 443221 1233333222 358
Q ss_pred eeEEEEccEEEEECCeeeeccHHHH
Q 012333 431 VVSVMCNGQWVMKNKKILLLMRGRL 455 (466)
Q Consensus 431 v~~v~v~G~~v~~~g~~~~~~~~~~ 455 (466)
|..||++|++||++|++.+...|++
T Consensus 417 v~~t~v~G~~v~~~g~~~~~~~g~~ 441 (443)
T TIGR03178 417 VRATYLRGQCIYDDEQFIGAPKGQL 441 (443)
T ss_pred EEEEEECCEEEEECCeeccCCCCcc
Confidence 9999999999999999876555544
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=257.84 Aligned_cols=338 Identities=20% Similarity=0.270 Sum_probs=215.5
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++++. +...+|+|+||||++|++..+....++ ....++|++|++|+|||||+|+|+.... ..+
T Consensus 2 ~li~n~~v~~~~~----~~~~dvlI~~gkI~~Ig~~~~~~~~~~-~~~~i~d~~G~~v~PGlID~HvH~~~gg----~~~ 72 (389)
T TIGR01975 2 TLLKGAEVYAPEY----IGKKDILIANDKIIAIADEIPSTKDFV-PNCVVVGLEGMIAVPGFIDQHVHIIGGG----GEG 72 (389)
T ss_pred EEEECcEEEcCCc----CcceeEEEECCEEEEEcCCccccccCC-CCeEEECCCCCEEccCEeehhhcccccc----ccC
Confidence 5899999997532 356799999999999998654321111 1334556699999999999999985421 000
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-----cC---HHHHHHHHHHhCCeEEeeccccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QH---VSEMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-----~~---~~~~~~~~~~~g~~~~~~~~~~~ 172 (466)
.+ ...++ + ..+.+++++||||++++.+ .+ .....++....|++.+.....++
T Consensus 73 ~~-------------~~~~~-e------~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~ 132 (389)
T TIGR01975 73 GP-------------TTRTP-E------LTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYH 132 (389)
T ss_pred CC-------------ccCCH-H------HHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEccccc
Confidence 00 01122 1 1356789999999999864 22 33678888999999988766553
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCe-EEEEeecccccCCHHHHHHHHHHHHHcC----Cc--cceeccC
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRI-RIWFGIRQIMNATDRLLLETRDMAREFK----TG--IHMHVAE 245 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~l~~~~~~a~~~~----~~--v~~H~~~ 245 (466)
.. ......+... .....+.. -.+ ++.+..+.....+.+.+.++.+.++..| .+ +++|..+
T Consensus 133 ~p----~~t~t~~~~~----d~~~~d~i-----iG~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~ 199 (389)
T TIGR01975 133 VP----SRTITGSVES----DLLLIDKV-----IGVGEIAISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGD 199 (389)
T ss_pred CC----Ccccccchhh----heeeehhh-----cccceEEEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 21 1111111110 01111111 123 2445556666788899999999999988 88 9999987
Q ss_pred CcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC------hhhHHHHHhcCCeEEECccchhhc--cCCc---
Q 012333 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN------HTEIGLLSRAGVKVSHCPASAMRM--LGFA--- 314 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~------~~~~~~~~~~g~~~~~~p~~~~~~--~~~~--- 314 (466)
.+...+...+. ++.-.. ....-|..+++ ++.++.+++-|..-+..|.....+ ...+
T Consensus 200 ~~~~l~~l~~~----------~~~~di---~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~~~~~~~~ 266 (389)
T TIGR01975 200 SKRALQPIYEL----------VENTDV---PITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVAPAE 266 (389)
T ss_pred chhhHHHHHHH----------HHhcCC---ChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhccccChHH
Confidence 65543332221 111111 11122333443 344565665555444444332211 2222
Q ss_pred cHHHHHHcCCc---EEEccCCCCCCCCC---------------CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 315 PIKEMLHADIC---VSLGTDGAPSNNRM---------------SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 315 ~~~~~~~~gi~---~~~gsD~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
.++.++++|++ ++++||.....+.+ +++..++... .. .++++++++++
T Consensus 267 ~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv--~~------------g~ls~~eal~~ 332 (389)
T TIGR01975 267 GIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAV--KD------------GDVPLEKALRV 332 (389)
T ss_pred HHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHH--Hh------------CCCCHHHHHHH
Confidence 45889999997 49999985322111 1234443322 11 13999999999
Q ss_pred HhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 377 ~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
+|.|||++||++ ++|+|++|++|||+|||.+ ..+..||.+|++++++|++.
T Consensus 333 ~T~npA~~Lgl~-~~G~I~~G~~ADlvild~~--------------------~~i~~v~~~G~~v~~~g~~~ 383 (389)
T TIGR01975 333 ITSNVAGVLNLT-GKGEISPGNDADLVVLDPD--------------------LRIHSVIARGKLMVKDGKAC 383 (389)
T ss_pred HHHHHHHHhCCC-CCCeECCCCcCCEEEEcCC--------------------CCEEEEEECCEEEEECCEEE
Confidence 999999999996 6899999999999999987 47899999999999999976
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=270.33 Aligned_cols=378 Identities=18% Similarity=0.185 Sum_probs=214.2
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
|++|+|++|+++++ ..+++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~~----~~~~~v~I~~g~I~~i~~~~~~----~-~~~~~iDa~G~~v~PG~ID~H~H~~~~~------ 65 (447)
T cd01315 1 DLVIKNGRVVTPDG----VREADIAVKGGKIAAIGPDIAN----T-EAEEVIDAGGLVVMPGLIDTHVHINEPG------ 65 (447)
T ss_pred CEEEECCEEECCCC----ceEeEEEEECCEEEEEeCCCCC----C-CCCeEEECCCCEEeccEeeceeccCCCC------
Confidence 68999999996422 3457999999999999875321 1 3678999999999999999999983210
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc---C---HHHHHHHHHHhCCeEEeecccccC
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---H---VSEMAKAVELLGLRACLVQSTMDC 173 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---~---~~~~~~~~~~~g~~~~~~~~~~~~ 173 (466)
....+ ......+.++.+||||+++++.. . ...+...................
T Consensus 66 ------------------~~~~e---~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~- 123 (447)
T cd01315 66 ------------------RTEWE---GFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWG- 123 (447)
T ss_pred ------------------ccccc---cHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEE-
Confidence 00001 11123455799999999998621 1 12222222221111111111110
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecc---cccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
+... . ..+ .++++.+.+...++.+..... ....+.+.+.++++.+++++.++.+|+.......
T Consensus 124 --~~~~-----~---~~~----ei~~l~~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~ 189 (447)
T cd01315 124 --GLVP-----G---NLD----QLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITE 189 (447)
T ss_pred --eecC-----C---CHH----HHHHHHHcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHH
Confidence 0110 0 111 123333334455665554332 2235778899999999999999999997643211
Q ss_pred HHHHh------------hcCCCC-----chHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECccchhhc
Q 012333 251 QVVMD------------TRKVDH-----GTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCPASAMRM 310 (466)
Q Consensus 251 ~~~~~------------~~~~~~-----~~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p~~~~~~ 310 (466)
..... ..+... .....+......+.+..+.|...- +-+.++.++..|.. +.+||+.....
T Consensus 190 ~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~ 269 (447)
T cd01315 190 ALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFT 269 (447)
T ss_pred HHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEc
Confidence 11100 000000 011122223333445555664431 12334444555544 34566532100
Q ss_pred --------------------cCCccHHHHHHcCCcEEEccCCCCCCCC------CCHHH--------HHHHHHHHhcccc
Q 012333 311 --------------------LGFAPIKEMLHADICVSLGTDGAPSNNR------MSIVD--------EMYLASLINKGRE 356 (466)
Q Consensus 311 --------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~------~~~~~--------~~~~~~~~~~~~~ 356 (466)
.....+..+++.|...+++|||.|.... .+++. ...+..++...
T Consensus 270 ~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~-- 347 (447)
T cd01315 270 AEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEA-- 347 (447)
T ss_pred HHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHH--
Confidence 1112445578889999999999876310 01111 00011111100
Q ss_pred cccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCC-CCCCC----cCCcccceecccCCCCe
Q 012333 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMVP----VHDRITSLVYCMRTENV 431 (466)
Q Consensus 357 ~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~-~~~~~----~~~~~~~~~~~~~~~~v 431 (466)
....++|++++++++|.+||+++|+++++|+|++|++|||||+|.+. +...+ ..++...+.......+|
T Consensus 348 ------~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v 421 (447)
T cd01315 348 ------VNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNKISPYVGRTLKGRV 421 (447)
T ss_pred ------HHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcHHHccccCCCCCccCeEEeeeE
Confidence 01235999999999999999999997678999999999999999873 22111 11112222122223579
Q ss_pred eEEEEccEEEEECCeeeeccHHHHH
Q 012333 432 VSVMCNGQWVMKNKKILLLMRGRLF 456 (466)
Q Consensus 432 ~~v~v~G~~v~~~g~~~~~~~~~~~ 456 (466)
..||++|++||++|+++....|+++
T Consensus 422 ~~ti~~G~~v~~~~~~~~~~~G~~~ 446 (447)
T cd01315 422 HATILRGTVVYQDGEVVGEPLGQLL 446 (447)
T ss_pred EEEEECCEEEEECCeEccCCCceEe
Confidence 9999999999999998754455543
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.48 Aligned_cols=378 Identities=17% Similarity=0.189 Sum_probs=220.7
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
+++|++|+|++|+++++ ...++|.|+||+|++|++.... ++.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~~~i~~~~v~~~~~----~~~~~v~i~~G~I~~i~~~~~~------~~~~~iD~~g~~vlPG~ID~H~H~~~~~--- 67 (451)
T PRK06189 1 MMYDLIIRGGKVVTPEG----VYRADIGIKNGKIAEIAPEISS------PAREIIDADGLYVFPGMIDVHVHFNEPG--- 67 (451)
T ss_pred CCccEEEECCEEEcCCC----cEEEEEEEECCEEEEecCCCCC------CCCeEEECCCCEEecCEEEeeeccCCCC---
Confidence 35789999999997443 2457999999999999874321 3567999999999999999999983210
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-c--c---CHHHHHHHHHHhCCeEEeeccc
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-G--Q---HVSEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~--~---~~~~~~~~~~~~g~~~~~~~~~ 170 (466)
....+ ......+.++.+|||++++++ . + ....+.................
T Consensus 68 ---------------------~~~~~---~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~ 123 (451)
T PRK06189 68 ---------------------RTHWE---GFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFAL 123 (451)
T ss_pred ---------------------CCCcc---cHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEE
Confidence 00011 112233568899999999985 1 1 1222222222222111111111
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEee---cccccCCHHHHHHHHHHHHHcCCccceeccCCc
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI---RQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
. . +... .... .+..+.+.+...++.+... ...+..+...+.++++.+++.+..+.+|+.+..
T Consensus 124 ~-~--~~~~--------~~~~----~l~~l~~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~ 188 (451)
T PRK06189 124 W-G--GLVP--------GNLE----HLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDA 188 (451)
T ss_pred E-e--cccc--------cCHH----HHHHHHHcCCcEEEEEccccCCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChH
Confidence 1 0 0110 0112 1223333333334444322 122345667888889988899999999997644
Q ss_pred chhHHH--HhhcC--------CCCch-------HHHHhhhccCCCCeeEEEeecCC-hhhHHHHHhcCC--eEEECccch
Q 012333 248 YENQVV--MDTRK--------VDHGT-------VTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGV--KVSHCPASA 307 (466)
Q Consensus 248 ~~~~~~--~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~g~--~~~~~p~~~ 307 (466)
...... ....+ ..... ...+...+..+.+..+.|...-. -+.++.+++.|. .+.+||+..
T Consensus 189 ~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L 268 (451)
T PRK06189 189 LTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYL 268 (451)
T ss_pred HHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHh
Confidence 211110 00000 00001 11222223334444455544311 133445555664 455777643
Q ss_pred hh-------------------c-cCCccHHHHHHcCCcEEEccCCCCCCCC----CCHHHH--------HHHHHHHhccc
Q 012333 308 MR-------------------M-LGFAPIKEMLHADICVSLGTDGAPSNNR----MSIVDE--------MYLASLINKGR 355 (466)
Q Consensus 308 ~~-------------------~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~----~~~~~~--------~~~~~~~~~~~ 355 (466)
.. . ....++++++++|+.++++|||.|+... .+++.. .....+++..
T Consensus 269 ~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~- 347 (451)
T PRK06189 269 LFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEG- 347 (451)
T ss_pred hcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHH-
Confidence 10 0 1124566789999999999999887432 122211 2222222211
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecccC
Q 012333 356 EVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYCMR 427 (466)
Q Consensus 356 ~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~~~ 427 (466)
....+++++++++++|.|||++||+ +++|+|++|++|||+|+|++ .|...+ ..+|+....+
T Consensus 348 -------~~~~~l~~~~~~~~~t~npA~~lgl-~~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~p~~g~~~--- 416 (451)
T PRK06189 348 -------YIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADFVLVDLDETYTLTKEDLFYRHKQSPYEGRTF--- 416 (451)
T ss_pred -------HhcCCCCHHHHHHHHhhhHHHHhCC-CCCCcccCCCcCCEEEEcCCCCEEECHHHhhhcCCCCCcCCcEE---
Confidence 0123599999999999999999999 56799999999999999997 432221 1233333222
Q ss_pred CCCeeEEEEccEEEEECCeeeeccHHHHHHH
Q 012333 428 TENVVSVMCNGQWVMKNKKILLLMRGRLFQL 458 (466)
Q Consensus 428 ~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 458 (466)
..+|..||++|++||++|+++....|+++++
T Consensus 417 ~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~ 447 (451)
T PRK06189 417 PGRVVATYLRGQCVYQDGEVFPPPRGQLLRP 447 (451)
T ss_pred EeEEEEEEECCEEEEECCEEccCCCCcEecC
Confidence 2579999999999999999887777777654
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=269.39 Aligned_cols=361 Identities=19% Similarity=0.202 Sum_probs=213.8
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
+++|+|++|++++ ..+.+++|.|+||+|++|++... .++.++||++|++|+|||||+|+|+...
T Consensus 2 ~~~i~~~~v~~~~---~~~~~~~I~I~dg~I~~i~~~~~------~~~~~~iD~~g~~v~PG~ID~H~H~~~~------- 65 (423)
T PRK09357 2 MILIKNGRVIDPK---GLDEVADVLIDDGKIAAIGENIE------AEGAEVIDATGLVVAPGLVDLHVHLREP------- 65 (423)
T ss_pred cEEEEeEEEECCC---CCcceeeEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeCCEEecccccCCC-------
Confidence 5899999999532 34567899999999999986421 1356899999999999999999997320
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------CHHHHHHHHHHhCCeEEeecccc
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQSTM 171 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~ 171 (466)
.....++ .....+.++.+|||++.+++.. ......+.....+.+.+.....+
T Consensus 66 ----------------~~~~~e~----~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (423)
T PRK09357 66 ----------------GQEDKET----IETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAI 125 (423)
T ss_pred ----------------Ccccccc----HHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE
Confidence 0011111 1122344689999999998732 12233344444554443333222
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhH
Q 012333 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (466)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 251 (466)
..+ ... ..+.+...+. +. .+.. +..+..+..+++.+.++++.+++++.++++|+.+......
T Consensus 126 ~~~--~~~--------~~~~~~~~l~----~~---gv~~-~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~ 187 (423)
T PRK09357 126 TKG--LAG--------EELTEFGALK----EA---GVVA-FSDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEG 187 (423)
T ss_pred EeC--CCC--------ccHHHHHHHH----hC---CcEE-EECCCcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhc
Confidence 211 110 0111112221 11 1222 4455556678889999999999999999999987543221
Q ss_pred HH------HhhcCC-CCch-------HHHHhhhccCCCCeeEEEeecCCh-hhHHHHHhcCCe--EEECccchh------
Q 012333 252 VV------MDTRKV-DHGT-------VTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVK--VSHCPASAM------ 308 (466)
Q Consensus 252 ~~------~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~g~~--~~~~p~~~~------ 308 (466)
.. ....+. .... ...+...+..+.+..+.|...... +.++.+++.|.. +.+||++..
T Consensus 188 ~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~ 267 (423)
T PRK09357 188 GVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDL 267 (423)
T ss_pred ccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHH
Confidence 00 000111 1011 112222223344555666554322 235555556655 458885321
Q ss_pred -------------hc-cCCccHHHHHHcCCcEEEccCCCCCCCCCC---HH--------HHHHHHHHHhcccccccCCCC
Q 012333 309 -------------RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMS---IV--------DEMYLASLINKGREVFANGTT 363 (466)
Q Consensus 309 -------------~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~ 363 (466)
|. ....++++++++|+.+++||||.|+....+ ++ .+.....+.... .
T Consensus 268 ~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~--------~ 339 (423)
T PRK09357 268 LTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTL--------V 339 (423)
T ss_pred hCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHccCCHhhCCCCceEHHHHHHHHHHHH--------H
Confidence 00 123567788999999999999998753211 11 111112222111 1
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCC-CCCCc--CCcccceecccC--CCCeeEEEEcc
Q 012333 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW-PMVPV--HDRITSLVYCMR--TENVVSVMCNG 438 (466)
Q Consensus 364 ~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~-~~~~~--~~~~~~~~~~~~--~~~v~~v~v~G 438 (466)
....++++++++++|.|||+++|+.+ |+|++|++|||+|+|.+.. ...+. .+.....+|... ..+|..||++|
T Consensus 340 ~~~~~~~~~~~~~~t~~~A~~~g~~~--G~i~~G~~AD~~i~d~~~~~~v~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G 417 (423)
T PRK09357 340 KTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDG 417 (423)
T ss_pred HcCCCCHHHHHHHHhHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCEEEchhhcccCCCCCCCcCCEEeeEEEEEEECC
Confidence 12359999999999999999999954 9999999999999998842 22111 111112222221 35799999999
Q ss_pred EEEEEC
Q 012333 439 QWVMKN 444 (466)
Q Consensus 439 ~~v~~~ 444 (466)
++||++
T Consensus 418 ~~v~~~ 423 (423)
T PRK09357 418 KIVYQD 423 (423)
T ss_pred EEEecC
Confidence 999975
|
|
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=263.07 Aligned_cols=342 Identities=22% Similarity=0.280 Sum_probs=212.9
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|++|++.+. ..+++|+|+||+|++|++..+.... .+..++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~i~~~~v~~~~~----~~~~~i~i~~g~I~~v~~~~~~~~~--~~~~~~id~~g~~v~PG~id~H~H~~~~~----- 69 (388)
T PRK10657 1 MFTLLKNAHVYAPED----LGKKDILIAGGKIIAIADNINIPDI--VPDIEVIDASGKILVPGFIDQHVHIIGGG----- 69 (388)
T ss_pred CeEEEEccEEECCCC----CcceEEEEECCEEEEecCCcccccc--CCCCeEEECCCCEEcccceeeeeCcccCC-----
Confidence 458999999997542 2457999999999999875432111 12468999999999999999999985211
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-----cCH---HHHHHHHHHhCCeEEeeccc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHV---SEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-----~~~---~~~~~~~~~~g~~~~~~~~~ 170 (466)
.... | ...+. + ....+++.+|+||++++.+ ... ....+.....|++.+.....
T Consensus 70 ~~~~---~---------~~~t~-~------~~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~ 130 (388)
T PRK10657 70 GEGG---F---------STRTP-E------VQLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGS 130 (388)
T ss_pred CCcc---c---------ccCCH-H------HHHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecC
Confidence 0000 0 01111 1 3456688999999999863 122 33355556889998855433
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCC------ccceecc
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVA 244 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~------~v~~H~~ 244 (466)
+.. +..+. .+...+.....+++... + +..+..+.....+++.+.++.+.++..+. ++++|+.
T Consensus 131 ~~~----~~~~~----~~~~~~~~~~~~~~~g~--g--~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~ 198 (388)
T PRK10657 131 YHV----PVRTI----TGSIRKDIVLIDKVIGV--G--EIAISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMG 198 (388)
T ss_pred CCC----Cchhh----hcchhhceehhhhhhCc--c--eeeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 321 11000 01111111122222211 1 33355555566688888888887765444 7899987
Q ss_pred CCcchhHHHHhhcCCCCchH-HHHhhhccCCCCeeEEEeec---CChhhHHHHHhcCCeEEEC-ccchhhc----cCCcc
Q 012333 245 EIPYENQVVMDTRKVDHGTV-TFLDKIEFLQNNLLSAHTVW---VNHTEIGLLSRAGVKVSHC-PASAMRM----LGFAP 315 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~g~~~~~~-p~~~~~~----~~~~~ 315 (466)
+...... .+ +++...+....+.+..|... ..++.++.+ +.|..+.+. +...++. .....
T Consensus 199 ~~~~~l~-----------~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~-~~G~~~~v~~~~~~~~~~~~~~~~~~ 266 (388)
T PRK10657 199 DGKKGLQ-----------PLFELLENTDIPISQFLPTHVNRNEPLFEQALEFA-KKGGVIDLTTSDPDFLGEGEVAPAEA 266 (388)
T ss_pred CchHHHH-----------HHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHH-HcCCeEEEecCCCcccccCccCHHHH
Confidence 5332111 12 23345555545555666554 323444444 456655332 2222222 12356
Q ss_pred HHHHHHcCC---cEEEccCCCCCCCCC---------------CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 012333 316 IKEMLHADI---CVSLGTDGAPSNNRM---------------SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377 (466)
Q Consensus 316 ~~~~~~~gi---~~~~gsD~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 377 (466)
+++++++|+ +++++||+....+.+ .++..++.... ..++|++++++++
T Consensus 267 l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~~--------------~~gis~~~~l~~a 332 (388)
T PRK10657 267 LKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELVK--------------DEGLPLEDALKPL 332 (388)
T ss_pred HHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHHH--------------hcCCCHHHHHHHH
Confidence 789999998 789999974322111 13344432211 1259999999999
Q ss_pred hHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeee
Q 012333 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449 (466)
Q Consensus 378 T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 449 (466)
|.|||+++|+++ +|+|++|++|||+++|.+ ..+..||++|++|++++++++
T Consensus 333 T~npA~~lg~~~-~G~l~~G~~AD~vv~~~~--------------------~~~~~~~~~G~~v~~~~~~~~ 383 (388)
T PRK10657 333 TSNVARFLKLNG-KGEILPGKDADLLVLDDD--------------------LRIEQVIAKGKLMVKDGKALV 383 (388)
T ss_pred HHHHHHHhCCCC-CCccCCCCccCEEEECCC--------------------CCEEEEEECCEEEEECCEEec
Confidence 999999999976 899999999999999943 479999999999999999864
|
|
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=270.74 Aligned_cols=368 Identities=17% Similarity=0.242 Sum_probs=213.2
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
+|++++|+|++|++.++ ....++|.|+||+|++|++.... + ...++||++|++|+|||||+|+|+...
T Consensus 1 ~~~~~~i~~~~i~~~~~---~~~~~~I~I~dg~I~~ig~~~~~----~-~~~~vid~~g~~v~PG~ID~H~H~~~~---- 68 (438)
T PRK07575 1 MMMSLLIRNARILLPSG---ELLLGDVLVEDGKIVAIAPEISA----T-AVDTVIDAEGLTLLPGVIDPQVHFREP---- 68 (438)
T ss_pred CcceEEEECCEEECCCC---CEEeeeEEEECCEEEEecCCCCC----C-CCCeEEECCCCEEcccEEEeeeccCCC----
Confidence 35789999999997532 23457999999999999874321 1 135899999999999999999997310
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHHHHHHHHHH----hCCeEEee
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVEL----LGLRACLV 167 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~~~~~~~~~----~g~~~~~~ 167 (466)
.....+.+ ....+.++++|||++++++.. ....+...... ..++..+.
T Consensus 69 --------------------~~~~~e~~---~~~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~ 125 (438)
T PRK07575 69 --------------------GLEHKEDL---FTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFF 125 (438)
T ss_pred --------------------CCcCcchH---HHHHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEE
Confidence 01111111 223345789999999998742 12222222222 12222111
Q ss_pred cccc----------cCCCCCCcccc---c-CChHHHHHHHHHHHHHhccCCCCCeEEEE--------------eeccc--
Q 012333 168 QSTM----------DCGEGLPASWA---V-RTTDDCIQSQKELYAKHHHAADGRIRIWF--------------GIRQI-- 217 (466)
Q Consensus 168 ~~~~----------~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------~~~~~-- 217 (466)
.... ....++. .+. . .............++.. ...+.... +...+
T Consensus 126 ~~~~~~~l~~l~~~~~~~g~~-~f~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~h~e~~~l~~~~~~~~~g~~~~~~ 200 (438)
T PRK07575 126 IGATPDNLPELLTANPTCGIK-IFMGSSHGPLLVDEEAALERIFAEG----TRLIAVHAEDQARIRARRAEFAGISDPAD 200 (438)
T ss_pred ccccccCHHHHHHhhCCeEEE-EEEeeCCCCcccCcHHHHHHHHHhC----CCEEEEeCcChHHHHhhhHhhccCcCccc
Confidence 1110 0000000 000 0 00000000001111110 01111100 00000
Q ss_pred ---ccCCH---HHHHHHHHHHHHcCCccce-eccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhH
Q 012333 218 ---MNATD---RLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 290 (466)
Q Consensus 218 ---~~~~~---~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~ 290 (466)
...+. +.+.+++++++..+.++++ |+. .....+......+ ..+.. .+..|..+++.+++
T Consensus 201 ~~~~~p~~aE~~av~~~~~la~~~g~~lhi~HiS-t~~~v~~i~~~k~------------~~vt~-ev~phhL~l~~~~~ 266 (438)
T PRK07575 201 HSQIQDEEAALLATRLALKLSKKYQRRLHILHLS-TAIEAELLRQDKP------------SWVTA-EVTPQHLLLNTDAY 266 (438)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHCCCEEEEECC-CHHHHHHHHHhcC------------CCEEE-EEchhhheeCHHHH
Confidence 01112 4567788899999999988 887 3333322222110 01111 23445578888776
Q ss_pred HHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCC---------C-CCH-HHHHHHHHHHhcccccc
Q 012333 291 GLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN---------R-MSI-VDEMYLASLINKGREVF 358 (466)
Q Consensus 291 ~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~---------~-~~~-~~~~~~~~~~~~~~~~~ 358 (466)
+ +.+....++|+ +|. ....++++++++|+.++++|||.|++. . ..+ ..++....+.+...
T Consensus 267 ~---~~~~~~k~~PP--LR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~l~~l~~~~~--- 338 (438)
T PRK07575 267 E---RIGTLAQMNPP--LRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAM--- 338 (438)
T ss_pred h---CCCceEEEeCC--CCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHccCCcccCCCCcccHHHHHHHHHHHHh---
Confidence 5 35667778887 443 456788999999999999999998752 0 111 23344444443321
Q ss_pred cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCc--------CCcccceecccCCCC
Q 012333 359 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITSLVYCMRTEN 430 (466)
Q Consensus 359 ~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~~~~~ 430 (466)
...+|++++++++|.|||++||+ +++|+|++|++|||||+|++.....+. .+|+..+.+. .+
T Consensus 339 ------~~~lsl~~~~~~~s~npAk~lgl-~~~G~L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~sp~~g~~~~---G~ 408 (438)
T PRK07575 339 ------RGKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLVLVDLNTYRPVRREELLTKCGWSPFEGWNLT---GW 408 (438)
T ss_pred ------cCCCCHHHHHHHHhhhHHHHcCC-CCCCccCCCCcCCEEEEcCCCCEEEchHHccccCCCCCCCCCEEe---eE
Confidence 12499999999999999999999 456999999999999999884221111 2344333332 47
Q ss_pred eeEEEEccEEEEECCeeeeccHHHHH
Q 012333 431 VVSVMCNGQWVMKNKKILLLMRGRLF 456 (466)
Q Consensus 431 v~~v~v~G~~v~~~g~~~~~~~~~~~ 456 (466)
+..||++|++||++|+++....|+.+
T Consensus 409 v~~tiv~G~~v~~~g~~~~~~~G~~~ 434 (438)
T PRK07575 409 PVTTIVGGQIVFDRGQVNTEVRGQAL 434 (438)
T ss_pred EEEEEECCEEEEECCEEccCCCceEe
Confidence 89999999999999998755445443
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=269.24 Aligned_cols=359 Identities=19% Similarity=0.271 Sum_probs=206.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.+++|+|++|++.+ .. ...+|.|+||+|++|++.... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~~i~~~~v~~~~---~~-~~~~i~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~ID~HvH~~~~~---- 67 (444)
T PRK09236 1 MKRILIKNARIVNEG---KI-FEGDVLIENGRIAKIASSISA-----KSADTVIDAAGRYLLPGMIDDQVHFREPG---- 67 (444)
T ss_pred CccEEEECCEEEcCC---Cc-eEeEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEECCCEEEcccccccCc----
Confidence 467899999999632 22 347999999999999864321 12568999999999999999999983210
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHHHHhCCeEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~ 172 (466)
....+ ........++.+|||++++++... ...+...................
T Consensus 68 --------------------~~~~e---~~~~~~~aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~ 124 (444)
T PRK09236 68 --------------------LTHKG---DIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYF 124 (444)
T ss_pred --------------------ccccc---cHHHHHHHHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEe
Confidence 00001 111233568999999999987432 22222222221111111111100
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEee--------------------------cc----------
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI--------------------------RQ---------- 216 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------------~~---------- 216 (466)
+ .... . ..+.. .+.+.+...+++++.. |.
T Consensus 125 -~--~~~~----~----~~e~~----~l~~~g~~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~H~e~~~~~~~~~ 189 (444)
T PRK09236 125 -G--ATND----N----LDEIK----RLDPKRVCGVKVFMGASTGNMLVDNPETLERIFRDAPTLIATHCEDTPTIKANL 189 (444)
T ss_pred -c--cCcc----c----HHHHH----HHHHccCcEEEEEeccCCCCcccCcHHHHHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 0 0000 0 00000 0000000111111100 00
Q ss_pred --------------------cccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCC
Q 012333 217 --------------------IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN 276 (466)
Q Consensus 217 --------------------~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (466)
+.......+.++++++++.++++++|..+.......... ....+.+
T Consensus 190 ~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~~hi~h~st~~~~~~i~~--------------~~~~g~~ 255 (444)
T PRK09236 190 AKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTRLHVLHISTAKELSLFEN--------------GPLAEKR 255 (444)
T ss_pred HHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHH--------------HHHCCCC
Confidence 000011123556677777777777765554433322221 1112233
Q ss_pred e---eEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCC------------CCC
Q 012333 277 L---LSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN------------RMS 340 (466)
Q Consensus 277 ~---~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~------------~~~ 340 (466)
. +..|+.++++++++. .+..+.++|. ++. ....++++++++|+.+++||||.+... .+.
T Consensus 256 vt~e~~~H~l~l~~~~~~~---~~~~~~~~Pp--lr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~G~~ 330 (444)
T PRK09236 256 ITAEVCVHHLWFDDSDYAR---LGNLIKCNPA--IKTASDREALRQALADDRIDVIATDHAPHTWEEKQGPYFQAPSGLP 330 (444)
T ss_pred EEEEEchhhhhcCHHHHhc---cCceEEECCC--CCCHHHHHHHHHHHhCCCCcEEECCCCCCCHHHhcCCcccCCCCcc
Confidence 3 345777888877763 4788899996 333 455688999999999999999987621 111
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCccc
Q 012333 341 IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT 420 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~ 420 (466)
.++.+ ...+.+.. ....+|++++++++|.|||+++|+. ++|+|++|++|||+|+|++.....+..+..+
T Consensus 331 ~~e~~-l~~l~~~v---------~~~~~~~~~~~~~~t~~pA~~lgl~-~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s 399 (444)
T PRK09236 331 LVQHA-LPALLELV---------HEGKLSLEKVVEKTSHAPAILFDIK-ERGFIREGYWADLVLVDLNSPWTVTKENILY 399 (444)
T ss_pred cHHHH-HHHHHHHH---------HhcCCCHHHHHHHHHHhHHHhcCCC-CCCccccCCcCCEEEEcCCCCEEEchHHhcc
Confidence 22221 11111111 1124999999999999999999994 5799999999999999987432222222222
Q ss_pred ceecc-----cCCCCeeEEEEccEEEEECCeeeeccHHHHHH
Q 012333 421 SLVYC-----MRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 457 (466)
Q Consensus 421 ~~~~~-----~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 457 (466)
...+. ....+|..||++|++||++|+++....|+.++
T Consensus 400 ~~~~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~G~~~~ 441 (444)
T PRK09236 400 KCGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVESCRGQRLE 441 (444)
T ss_pred cCCCCCCCCCEEeeeEEEEEECCEEEEECCEEccCcCceEee
Confidence 21111 22458999999999999999987554565543
|
|
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=257.70 Aligned_cols=331 Identities=19% Similarity=0.186 Sum_probs=199.5
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh-------hhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~-------~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
+..|++|+|++|++.. + ...++|.|+||+|++|++..... ..+...++++||++|++|+|||||+|+|+
T Consensus 69 ~~~DlVI~Na~IiD~~--g--i~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~ 144 (573)
T PRK13206 69 GAPDTVITGAVILDHW--G--IVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHF 144 (573)
T ss_pred CCCCEEEECeEEECCC--C--eEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeecc
Confidence 4679999999999532 2 24579999999999999753210 00112357899999999999999999998
Q ss_pred cccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---------------HHHHH
Q 012333 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---------------VSEMA 154 (466)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---------------~~~~~ 154 (466)
. .+.. .+.++.+||||+++++... ...+.
T Consensus 145 ~----------------------------~Pg~--------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~ 188 (573)
T PRK13206 145 I----------------------------CPQI--------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARML 188 (573)
T ss_pred C----------------------------CchH--------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHH
Confidence 2 1111 1558999999999864221 01111
Q ss_pred HHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHH
Q 012333 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 234 (466)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~ 234 (466)
+......++..+ .+.+. ... .+.+.++.+.+...++.+ ..+..+++.+.++++.|++
T Consensus 189 ~aa~~~pvn~g~------~g~g~------~~~-------~~~L~el~~aGA~GfKi~----~d~g~t~~~i~~aL~~A~~ 245 (573)
T PRK13206 189 EALDGWPVNVAL------LGKGN------TVS-------AEALWEQLRGGAGGFKLH----EDWGSTPAAIDACLRVADA 245 (573)
T ss_pred HHhhcCceeEEE------ecCcC------cCC-------HHHHHHHHHCCCcEEeec----CccCCCHHHHHHHHHHHHH
Confidence 111111111111 01010 000 112333344444444432 3345789999999999999
Q ss_pred cCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC----ChhhHHHHHhcCCeE-EECccch--
Q 012333 235 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV----NHTEIGLLSRAGVKV-SHCPASA-- 307 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~g~~~-~~~p~~~-- 307 (466)
++.++.+|+....... ..+. ......+......|.... .++.++..-..++.. +++|+--
T Consensus 246 ~gv~V~iHadtlne~g------------~~E~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~~n~lp~stnpt~p~~ 312 (573)
T PRK13206 246 AGVQVALHSDTLNEAG------------FVED-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSSTNPTRPHT 312 (573)
T ss_pred hCCEEEEECCCccccc------------hhhH-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCCCCCcCCCCCCCCCCc
Confidence 9999999997543221 1111 111111222223332111 123333332223221 1222211
Q ss_pred -------------------------------hhccCCccHHHHHHcCCcEEEccCCCCCCCC----CCHHHHHHHHHHHh
Q 012333 308 -------------------------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNR----MSIVDEMYLASLIN 352 (466)
Q Consensus 308 -------------------------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~----~~~~~~~~~~~~~~ 352 (466)
.|...+..-..+.+.|+..+++||++..+.- ..+|.....+
T Consensus 313 ~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~~~~~~q~a~~~---- 388 (573)
T PRK13206 313 VNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEVVLRTWQTAHVM---- 388 (573)
T ss_pred ccchhhhhCeEEeeccCCCCCcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccchhhhHHHHHHHH----
Confidence 1112233445689999999999999874332 2344444333
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCee
Q 012333 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 432 (466)
Q Consensus 353 ~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 432 (466)
+.+.....++...+.++..++|+++|.+||+++|+++.+|+|++||.|||||||++.+. .++.
T Consensus 389 ~~rr~~l~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f~-----------------~~~~ 451 (573)
T PRK13206 389 KRRRGALPGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFFG-----------------VRPH 451 (573)
T ss_pred HhccCCCCCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccccC-----------------CCcc
Confidence 22222222333356799999999999999999999888999999999999999998332 3688
Q ss_pred EEEEccEEEEEC
Q 012333 433 SVMCNGQWVMKN 444 (466)
Q Consensus 433 ~v~v~G~~v~~~ 444 (466)
.||++|+++|..
T Consensus 452 ~ti~~G~iv~~~ 463 (573)
T PRK13206 452 AVLKGGAIAWAA 463 (573)
T ss_pred EEEECCEEEEec
Confidence 999999999975
|
|
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=261.32 Aligned_cols=380 Identities=19% Similarity=0.146 Sum_probs=227.2
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
.+++|++|+|++|+++++ .....++|.|+||+|++|++... .+.++||++|++|+|||||+|+|....
T Consensus 16 ~~~~~~li~~~~vid~~~--~~~~~~~v~I~~G~I~~ig~~~~-------~~~~viD~~g~~v~PG~ID~H~H~~~~--- 83 (509)
T PRK09061 16 MAPYDLVIRNGRVVDPET--GLDAVRDVGIKGGKIAAVGTAAI-------EGDRTIDATGLVVAPGFIDLHAHGQSV--- 83 (509)
T ss_pred cccCCEEEECcEEEeCCC--CeeccceEEEECCEEEEecCCCC-------CCCeEEeCCCCEEecCeEeeeeCCCCC---
Confidence 345789999999996443 33345799999999999987421 356899999999999999999997210
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-c-cCHHHHHHHHHHhC--CeEEeecccc
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-G-QHVSEMAKAVELLG--LRACLVQSTM 171 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~-~~~~~~~~~~~~~g--~~~~~~~~~~ 171 (466)
. ....++.+||||++++. + .......+.....+ ++.....+..
T Consensus 84 ----------------------~-----------~~~~~~~~GvTtvv~~~~~~~p~~~~~~~~~~~~~~vn~~~~~~~~ 130 (509)
T PRK09061 84 ----------------------A-----------AYRMQAFDGVTTALELEAGVLPVARWYAEQAGEGRPLNYGASVGWT 130 (509)
T ss_pred ----------------------c-----------cchhhccCCceeEEeeccCCCCHHHHHHHHHhcCCcceeehhcCcH
Confidence 0 01235788999999872 2 22333333333333 2322211110
Q ss_pred ------cCCC---CCC---------c-ccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHH
Q 012333 172 ------DCGE---GLP---------A-SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (466)
Q Consensus 172 ------~~~~---~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a 232 (466)
..++ +.. . ......+.+.+.+..+++++..+.|...++. ...+.+..+.+++.++++.+
T Consensus 131 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~--~~~y~p~~~~~eL~~l~~~A 208 (509)
T PRK09061 131 PARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAEILELLEQGLDEGALGIGI--GAGYAPGTGHKEYLELARLA 208 (509)
T ss_pred HHHHHHhCCcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHCCCCEEec--CCccCCCCCHHHHHHHHHHH
Confidence 0000 000 0 0111122344555666666555555444442 22333456888999999999
Q ss_pred HHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-------hhHHHHHhcCCeE--EEC
Q 012333 233 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKV--SHC 303 (466)
Q Consensus 233 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-------~~~~~~~~~g~~~--~~~ 303 (466)
+++|.++.+|+.+........ + .....+.+......+.+..+.|...+.. +.++++++.|+.+ ..+
T Consensus 209 ~~~g~~v~~H~e~~~~~~~~~-e----~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 209 ARAGVPTYTHVRYLSNVDPRS-S----VDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHcCCEEEEEecCcccCCchh-H----HHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 999999999997653210000 0 0012334444555566788888876432 4466777777665 477
Q ss_pred ccch-----------h--h-----------c-------cC----------------------------CccHHHHHHcCC
Q 012333 304 PASA-----------M--R-----------M-------LG----------------------------FAPIKEMLHADI 324 (466)
Q Consensus 304 p~~~-----------~--~-----------~-------~~----------------------------~~~~~~~~~~gi 324 (466)
|+.. . + . +. ...+...+.++.
T Consensus 284 P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~ 363 (509)
T PRK09061 284 PYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPG 363 (509)
T ss_pred CcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCC
Confidence 7761 0 0 0 00 112444555564
Q ss_pred cEEEccCCCCCCCC------------C-CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC-----
Q 012333 325 CVSLGTDGAPSNNR------------M-SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL----- 386 (466)
Q Consensus 325 ~~~~gsD~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg----- 386 (466)
. +++||+.|.... . ....+++.+..+.+....+. .....+|++++++++|.+||++||
T Consensus 364 ~-~i~sD~~p~~~~~~~~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v---~~~~~isl~~ai~~~T~~pA~~lg~~~~~ 439 (509)
T PRK09061 364 A-AIASDAMPWTWSDGTVYEGDAWPLPEDAVSHPRSAGTFARFLREYV---RERKALSLLEAIRKCTLMPAQILEDSVPA 439 (509)
T ss_pred c-eEecCCccccccccccccccccccccCCCCCchhhcchHHHHHHHH---hhcccCCHHHHHHHHHHHHHHHhcccccc
Confidence 4 899998653200 0 11111111111111000000 011249999999999999999999
Q ss_pred CCCcccccccCCccCEEEEcCCCCCCC-CcCCcccceecccCCCCeeEEEEccEEEEECCeee-eccHHHHHHH
Q 012333 387 WDNDIGSLEAGKKADMVVVDPFSWPMV-PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL-LLMRGRLFQL 458 (466)
Q Consensus 387 l~~~~G~i~~G~~ADlvv~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~~~~~~~ 458 (466)
+. .+|+|++|+.|||+|||++.+... .+.++.. ....|+.||++|++||++|+++ +...|+++++
T Consensus 440 l~-~~G~i~~G~~ADlvv~D~~~~~~~~~~~~~~~------~~~gi~~v~v~G~~v~~~g~~~~~~~~G~~lr~ 506 (509)
T PRK09061 440 MR-RKGRLQAGADADIVVFDPETITDRATFEDPNR------PSEGVRHVLVNGVPVVSNGELVRDARPGRPVRR 506 (509)
T ss_pred cc-CCEeeCCCCCcCEEEEchhhccccccccccCC------CCCCceEEEECCEEEEECCEecCCCCCCeEecC
Confidence 84 469999999999999999853322 2223211 1246999999999999999974 7888988764
|
|
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=260.75 Aligned_cols=355 Identities=15% Similarity=0.131 Sum_probs=226.2
Q ss_pred eceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc-C---CCCchHhhhhccccc
Q 012333 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA-D---DVDLMTWLHDRIWPY 114 (466)
Q Consensus 39 ~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 114 (466)
...+|.|++|+|++|++.... +..+.++||++|++|+|||||+|+|+.+...++.. . .....+|+....+..
T Consensus 30 ~~~~i~i~~g~I~~i~~~~~~----~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 105 (410)
T PRK06846 30 ALCTLEIQDGKIVAIRPNKQV----PDATLPTYDANGLLMLPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKEL 105 (410)
T ss_pred eeEEEEEECCEEEEeecCCCC----CCCCCceEeCCCCEEecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhH
Confidence 356999999999999975321 11246799999999999999999999876544422 1 133466664322222
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-------HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChH
Q 012333 115 ESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTD 187 (466)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
.... +.........+..++.+|+|+++++.... ...+.+...+............ ...+.. .
T Consensus 106 ~~~~--~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~~v~~~~~a~-~~~g~~----~---- 174 (410)
T PRK06846 106 PELL--PTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKDGFTYEIVAF-PQHGLL----R---- 174 (410)
T ss_pred HHhH--HHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhCcceEEEEec-cCcccC----C----
Confidence 1111 11112222455667788999977654211 1222233333222111111111 011110 0
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHH
Q 012333 188 DCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFL 267 (466)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (466)
....+.+++..+.+...++ .+.+......+++.+.+++++|+++|+++++|+.+.......... ...+.+
T Consensus 175 ---~~~~~lL~~al~~Ga~~i~-gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~------~~~~~~ 244 (410)
T PRK06846 175 ---SNSEPLMREAMKMGAHLVG-GVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIK------YLVETT 244 (410)
T ss_pred ---ccHHHHHHHHHHcCCCEEe-CCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHH------HHHHHH
Confidence 0112445555555444332 234444556778899999999999999999999876654332221 145666
Q ss_pred hhhccCCCCeeEEEeecC---ChhhH----HHHHhcCCeEEECccchhhccCCccHHHHHHcCCcEEEccCCCC----CC
Q 012333 268 DKIEFLQNNLLSAHTVWV---NHTEI----GLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAP----SN 336 (466)
Q Consensus 268 ~~~~~~~~~~~~~H~~~~---~~~~~----~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~gi~~~~gsD~~~----~~ 336 (466)
...++.+ +..+.|+.++ +++++ +++++.|+.++.++. ...+.+|+++++++|+++++|||++. ..
T Consensus 245 ~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~~~---~~~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~ 320 (410)
T PRK06846 245 EEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGISITSTVP---IGRLHMPIPLLHDKGVKVSLGTDSVIDHWSPF 320 (410)
T ss_pred HHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEeCC---CCCCCCCHHHHHhCCCeEEEecCCCCCCCcCC
Confidence 6677555 8999999975 56664 468999998887644 12567999999999999999999752 22
Q ss_pred CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcC
Q 012333 337 NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~ 416 (466)
...++++.++......+.. .. -++.++++++|.+ |..+++++.+|+|++||.|||||+|.+.. .+
T Consensus 321 ~~~d~~~~~~~~~~~~~~~--------~~--~~~~~~l~~~T~~-a~~l~~~~~~G~l~~G~~ADlvlld~~~~----~~ 385 (410)
T PRK06846 321 GTGDMLEKANLLAELYRWS--------DE--RSLSRSLALATGG-VLPLNDEGERVWPKVGDEASFVLVDASCS----AE 385 (410)
T ss_pred CCCCHHHHHHHHHHHhcCC--------CH--HHHHHHHHHHcCC-ccccccCCCccCCCCCCcccEEEEeCCCh----HH
Confidence 3467999888765544311 11 2456899999988 45688777789999999999999998721 11
Q ss_pred CcccceecccCCCCeeEEEEccEEEEEC
Q 012333 417 DRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 417 ~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
. + .....+..||++|++||..
T Consensus 386 ~-~------~~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 386 A-V------ARQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred H-H------HhcCCceEEEECCEEEeee
Confidence 1 1 1236899999999999984
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=255.05 Aligned_cols=333 Identities=18% Similarity=0.199 Sum_probs=207.2
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhh-----hhccCCCeEEeCCCcEEeecccccccCCcc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~-----~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~ 91 (466)
+.+|++|+|++|++. .. +..++|+|+||+|++|++...... .....++++||++|++|+|||||+|+|+..
T Consensus 65 ~~mDlVI~Na~Vvd~---~g-i~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~ 140 (568)
T PRK13207 65 GAVDTVITNALILDH---WG-IVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFIC 140 (568)
T ss_pred ccCCEEEECeEEECC---CC-eEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCcc
Confidence 467999999999953 22 346799999999999997532110 011136789999999999999999999821
Q ss_pred cccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---------------HHHHHHH
Q 012333 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---------------VSEMAKA 156 (466)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---------------~~~~~~~ 156 (466)
+.. .+.++.+||||+++++... ...+.+.
T Consensus 141 ----------------------------P~~--------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~ 184 (568)
T PRK13207 141 ----------------------------PQQ--------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQA 184 (568)
T ss_pred ----------------------------ccH--------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHH
Confidence 111 2457899999999974211 1111111
Q ss_pred HHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 012333 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (466)
Q Consensus 157 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 236 (466)
.....+...+ . +.+ ...... .+++..+.+...++.+ ..+..+++.+.++++.|++++
T Consensus 185 a~~~pin~g~----~--g~g---------~~~~~~----~L~e~i~aGA~gfKi~----~d~g~t~~~l~~aL~~A~~~g 241 (568)
T PRK13207 185 ADAFPMNIGF----L--GKG---------NASLPE----ALEEQIEAGAIGLKLH----EDWGATPAAIDNCLSVADEYD 241 (568)
T ss_pred hhcCCceEEE----E--cCC---------CcccHH----HHHHHHHcCCCEEeec----CCCCCCHHHHHHHHHHHHHhC
Confidence 1111111110 0 000 011112 2223333444444432 223458889999999999999
Q ss_pred CccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeec-------CChhhHHHHHhcCCeEE-ECccchh
Q 012333 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-------VNHTEIGLLSRAGVKVS-HCPASAM 308 (466)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-------~~~~~~~~~~~~g~~~~-~~p~~~~ 308 (466)
.++.+|+....... ..+. .+.....+ ..|..| ..++.++.+...++... ++|+--+
T Consensus 242 v~V~iHa~tlne~G------------~~e~--t~~a~~g~--~iH~~H~egaggghapdii~~~~~~~v~p~st~pt~p~ 305 (568)
T PRK13207 242 VQVAIHTDTLNESG------------FVED--TIAAFKGR--TIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPY 305 (568)
T ss_pred CEEEEeCCCcccch------------HHHH--HHHhcCCC--EEEEEeecCCCcCCchHHHHHhhcCCCccCCCCCCCCC
Confidence 99999996533221 1111 11111111 344444 34677788877776533 3443111
Q ss_pred ---------------------------------hccCCccHHHHHHcCCcEEEccCCCCCCC-CCCHHHHHHHHHHHhcc
Q 012333 309 ---------------------------------RMLGFAPIKEMLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKG 354 (466)
Q Consensus 309 ---------------------------------~~~~~~~~~~~~~~gi~~~~gsD~~~~~~-~~~~~~~~~~~~~~~~~ 354 (466)
|...+..-.-+++.|+.++++||++..+. ...++..++.+......
T Consensus 306 ~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~~~~r~~q~A~~r~~~ 385 (568)
T PRK13207 306 TVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGEVIIRTWQTAHKMKVQ 385 (568)
T ss_pred ccCchhhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchhhhCCCEEEecCCcccccccccchhHHHHHHHHHHHc
Confidence 11122233457899999999999986532 24677888877766543
Q ss_pred cccc--cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCee
Q 012333 355 REVF--ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 432 (466)
Q Consensus 355 ~~~~--~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 432 (466)
+... ..++...+.+++. |+++|.|||+++|+++.+|+|++||.||||||+.+.+. .++.
T Consensus 386 ~G~~~~d~~~~~n~ri~~~--l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~f~-----------------~~~~ 446 (568)
T PRK13207 386 RGPLPGDSGRNDNFRVKRY--IAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAFFG-----------------VKPE 446 (568)
T ss_pred cCCCCcccccCccchHHHH--HHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchhcC-----------------CCce
Confidence 2222 1122233345444 99999999999999988999999999999999998432 4688
Q ss_pred EEEEccEEEEEC-Cee
Q 012333 433 SVMCNGQWVMKN-KKI 447 (466)
Q Consensus 433 ~v~v~G~~v~~~-g~~ 447 (466)
.||++|+++|.. |..
T Consensus 447 ~ti~~G~iv~~~~gd~ 462 (568)
T PRK13207 447 LVLKGGMIAWAPMGDP 462 (568)
T ss_pred EEEECCEEEEecCCCc
Confidence 999999999987 543
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=253.28 Aligned_cols=329 Identities=20% Similarity=0.202 Sum_probs=199.7
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|++++|+|++|++.++ .. .++|.|+||||++|++... ...++||++|++|+|||||+|+|...
T Consensus 1 ~~~~~i~~~~v~~~~~---~~-~~~i~i~~g~I~~i~~~~~-------~~~~~iDa~g~~v~PG~ID~H~h~~~------ 63 (383)
T PRK15446 1 MMEMILSNARLVLPDE---VV-DGSLLIEDGRIAAIDPGAS-------ALPGAIDAEGDYLLPGLVDLHTDNLE------ 63 (383)
T ss_pred CccEEEECcEEEcCCC---ce-eeeEEEECCEEEEecCCCC-------CCCceEeCCCCEEEeCeEEcccCCcc------
Confidence 4689999999997442 22 6799999999999997432 14478999999999999999996531
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-c--C-----HH----HHHHHHH--HhCCe
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-Q--H-----VS----EMAKAVE--LLGLR 163 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~--~-----~~----~~~~~~~--~~g~~ 163 (466)
..+..|.. ..| ...+ .......+++.+||||+.++.. . . .. .+.+... ....+
T Consensus 64 ---~~~~p~~~-~~~------~~~~---~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
T PRK15446 64 ---KHLAPRPG-VDW------PADA---ALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGL 130 (383)
T ss_pred ---cccCCCCC-Ccc------chHH---HHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCc
Confidence 00011100 001 1112 2223447789999999999631 1 1 12 1112222 11111
Q ss_pred EEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeec----------------------------
Q 012333 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIR---------------------------- 215 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------------------- 215 (466)
. ..+.+.... ... .....+++ +..+.+.+.-.++.++...
T Consensus 131 ~-----~vD~~~h~~--~~~-~~~~~~~~----l~~~~~~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~~~g~~~~e~~ 198 (383)
T PRK15446 131 L-----RADHRLHLR--CEL-TNPDALEL----FEALLAHPRVDLVSLMDHTPGQRQFRDLEKYREYYAGKYGLSDEEFD 198 (383)
T ss_pred h-----hccceeEEE--EEe-cCcchHHH----HHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHH
Confidence 1 111110000 000 00001111 1111122222222222111
Q ss_pred --------ccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh
Q 012333 216 --------QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (466)
Q Consensus 216 --------~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~ 287 (466)
.+...+.+.++.+++.|+++|+++.+|+.+......... . .+- ..+.| ..+.
T Consensus 199 ~~~~~~~~~~~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~--------------~---~Gv-~~~e~--~~~~ 258 (383)
T PRK15446 199 AFVEERIALSARYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAH--------------A---LGV-AIAEF--PTTL 258 (383)
T ss_pred HHHHHHHHhHhhcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHH--------------H---cCC-ceeeC--CCcH
Confidence 122246778899999999999999999865433221111 1 111 11223 3467
Q ss_pred hhHHHHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCC
Q 012333 288 TEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 364 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
+.++.+++.|+.+..++...++. .+..+++.+++.|+++++|||+.+. +++..+.... .
T Consensus 259 e~~~~~~~~g~~v~~~~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~----~~~~~~~~~~--~------------ 320 (383)
T PRK15446 259 EAARAARALGMSVLMGAPNVVRGGSHSGNVSALDLAAAGLLDILSSDYYPA----SLLDAAFRLA--D------------ 320 (383)
T ss_pred HHHHHHHHCCCEEEeCCcccccCCcccchHhHHHHHHCCCcEEEEcCCChh----hHHHHHHHHH--H------------
Confidence 88888888999888776544443 3456788999999999999999653 2333222111 1
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 365 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 365 ~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
..++|++++++++|.|||+++|+++ +|+|++|++|||+|+|.+ +. ...+..||++|++||+.
T Consensus 321 ~~gls~~~al~~~T~npA~~lgl~~-~G~I~~G~~ADlvv~d~~-----~~------------~~~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 321 DGGLDLPQAVALVTANPARAAGLDD-RGEIAPGKRADLVRVRRA-----GG------------LPVVRAVWRGGRRVFLA 382 (383)
T ss_pred hcCCCHHHHHHHHhHHHHHHcCCCC-CcCcCCCCcCCEEEEcCC-----CC------------CcchheEEECCEEEEeC
Confidence 1259999999999999999999965 499999999999999998 11 13788999999999874
|
|
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=252.75 Aligned_cols=353 Identities=17% Similarity=0.169 Sum_probs=215.7
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++.. ......+|+|++|+|++|++..+. + .+.++||++|++|+|||||+|+|+.....
T Consensus 1 ~~i~~~~v~d~~~--~~~~~~~v~i~~g~I~~v~~~~~~----~-~~~~~iD~~g~~v~PG~iD~H~H~~~~~~------ 67 (380)
T PRK09237 1 LLLRGGRVIDPAN--GIDGVIDIAIEDGKIAAVAGDIDG----S-QAKKVIDLSGLYVSPGWIDLHVHVYPGST------ 67 (380)
T ss_pred CEEEeEEEECCCC--CcccceEEEEECCEEEEecCCCCC----C-CCCeEEECCCCEEecCEEEeeecCCCCCC------
Confidence 4799999996443 234567999999999999875332 1 25689999999999999999999843110
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc---CHHHHHHHHHHh-CCeEEeecccccCCCC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELL-GLRACLVQSTMDCGEG 176 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 176 (466)
.... .....++.+||||+++++.. ....+.+..... +.+......+...+.-
T Consensus 68 ---------------~~~~---------~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~ 123 (380)
T PRK09237 68 ---------------PYGD---------EPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLL 123 (380)
T ss_pred ---------------ccCC---------CHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeeccccc
Confidence 0000 11134789999999997643 344445544444 5544332211111111
Q ss_pred CCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhh
Q 012333 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (466)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~ 256 (466)
.+...........+...+.+.++.+. -..++..+..........+.++....++++.++++.+|+.+.......
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~~~~-v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~---- 197 (380)
T PRK09237 124 -AQDELADLEDIDADAVAEAVKRNPDF-IVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEE---- 197 (380)
T ss_pred -ccchhcCHhHCCHHHHHHHHHhCcCc-EEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHH----
Confidence 11111111111223334444433221 112232222211111111233334444568899999999764432221
Q ss_pred cCCCCchHHHHhhhccCCCCeeEEEeecCCh-----------hhHHHHHhcCCeEEECccchhhccCCccHHHHHHcCC-
Q 012333 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADI- 324 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-----------~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~gi- 324 (466)
.+. ++.....+.|+...++ +....+.++|+.+.+...+.. ........++++|+
T Consensus 198 ---------l~~---~l~~g~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~~~--~~~~~~~~l~~~g~~ 263 (380)
T PRK09237 198 ---------ILE---LLRPGDILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGTAS--FSFKVAEAAIAAGIL 263 (380)
T ss_pred ---------HHh---hccCCCEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCCCc--ccHHHHHHHHHCCCC
Confidence 111 1222346789887766 567777888988876522210 12234567778886
Q ss_pred cEEEccCCCCCC----CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCcc
Q 012333 325 CVSLGTDGAPSN----NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 400 (466)
Q Consensus 325 ~~~~gsD~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~A 400 (466)
+.+++||..+.. +.+.+...+... .. .+++++++++++|.|||+++|+ +++|+|++|+.|
T Consensus 264 ~~~l~tD~~~~~~~~~~~~~l~~~~~~~--~~-------------~g~~~~~al~~aT~n~A~~lgl-~~~G~l~~G~~A 327 (380)
T PRK09237 264 PDTISTDIYCRNRINGPVYSLATVMSKF--LA-------------LGMPLEEVIAAVTKNAADALRL-PELGRLQVGSDA 327 (380)
T ss_pred ceEEECCCCCCCcccchHhHHHHHHHHH--HH-------------hCCCHHHHHHHHHHHHHHHcCC-CCCCcCCCCCcC
Confidence 569999976532 111222322221 11 2599999999999999999999 568999999999
Q ss_pred CEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCee
Q 012333 401 DMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 447 (466)
Q Consensus 401 Dlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 447 (466)
||++++.+... .+..|+...+++......+..||++||+||.+-..
T Consensus 328 Dlvv~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~ 373 (380)
T PRK09237 328 DLTLFTLKDGP-FTLTDSEGDSLIGERLLTPLATVRGGKVVLTEQGS 373 (380)
T ss_pred CEEEEeCCCCC-ccccCCCCCEEEecCCCcceEEEECCEEEEccCcc
Confidence 99999987544 36778888888888889999999999999987543
|
|
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=259.17 Aligned_cols=351 Identities=15% Similarity=0.140 Sum_probs=205.2
Q ss_pred CCCCCCCCCCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh--hhh---ccCCCeEEeCCCcEEee
Q 012333 6 SGGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--QQF---SQMADQIIDLQSQILLP 80 (466)
Q Consensus 6 ~~~~~~~~~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~--~~~---~~~~~~~iD~~G~~v~P 80 (466)
++|++..-...+.+|++|+|++|++. .+ +..++|.|+||+|++|++..+.. ..+ ...++++||++|++|+|
T Consensus 53 ~~~~~~~~~~~~~MDlVIkNg~VID~--~g--i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~P 128 (567)
T TIGR01792 53 MGQNATLTRNAGVLDLVITNALILDW--TG--IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTA 128 (567)
T ss_pred CCCCCCCCCccccCcEEEECeEEECC--CC--eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEE
Confidence 45533333334567999999999963 22 45689999999999999754221 000 01356899999999999
Q ss_pred cccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc------------
Q 012333 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------ 148 (466)
Q Consensus 81 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~------------ 148 (466)
||||+|+|+. .+. ..+.++..||||+.+.|..
T Consensus 129 GlIDtHvH~~----------------------------~P~--------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~ 172 (567)
T TIGR01792 129 GGIDTHVHYI----------------------------SPQ--------QVQAALDNGITTLIGGGTGPADGTNATTCTP 172 (567)
T ss_pred CeEEeecCCC----------------------------Ccc--------HHHHHHhCceEEEecCCCccccCCCCccccc
Confidence 9999999982 111 1255789999999995431
Q ss_pred ---CHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHH
Q 012333 149 ---HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL 225 (466)
Q Consensus 149 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 225 (466)
....+.++....+++..+. +.+. ...... +.+..+.+. ..+..+..+..+++.+
T Consensus 173 ~~~~~~~~l~aa~~~~in~g~~------g~g~---------~~~~~~----L~e~i~aGa----~gfK~h~~y~~s~e~L 229 (567)
T TIGR01792 173 GPWYLHRMLQAADGLPINFGFT------GKGS---------GSGPAA----LIEQIEAGA----CGLKVHEDWGATPAAI 229 (567)
T ss_pred chhhHHHHHHHhccCCccEEEE------eCCc---------cchHHH----HHHHHHcCC----cEEEeCCCCCCCHHHH
Confidence 1122334444445543221 0010 001111 222222222 2356677778999999
Q ss_pred HHHHHHHHHcCCccceeccCCcch---hHHHHhhcCCCCchHHHHhhhccCCCC-----------eeEEEeecC-ChhhH
Q 012333 226 LETRDMAREFKTGIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEFLQNN-----------LLSAHTVWV-NHTEI 290 (466)
Q Consensus 226 ~~~~~~a~~~~~~v~~H~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~H~~~~-~~~~~ 290 (466)
.++++.|++++.++++|+ +...+ .+...... +..+++.++..+.-..+ .++...+.- .|...
T Consensus 230 ~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~--g~rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~st~pt~p~~~ 306 (567)
T TIGR01792 230 DNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAF--KGRTIHTYHTEGAGGGHAPDIIVVVGYNNILPSSTNPTLPYTV 306 (567)
T ss_pred HHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHH--CCCcchhHhhcCCCCCcHHHHHHHcCCCCcccCCCCCCCCCcc
Confidence 999999999999999999 55555 33232222 33355555555432211 111111000 01111
Q ss_pred HHHHhcCCeEEECccch-------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCC----CHHHHHHHHHHHhc
Q 012333 291 GLLSRAGVKVSHCPASA-------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRM----SIVDEMYLASLINK 353 (466)
Q Consensus 291 ~~~~~~g~~~~~~p~~~-------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~----~~~~~~~~~~~~~~ 353 (466)
..+.+.--.+.+|..-+ .|...+..-..+.+.|+..+++||+++.+.-. ..|..-.. ..+
T Consensus 307 ~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~~~~r~~q~a~k---~~~ 383 (567)
T TIGR01792 307 NTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGEVVTRCWQTADK---MKK 383 (567)
T ss_pred CchhhhcCeEEEeccCCCCCcccchhhhhhccceeccccchhhhCCcEEEecCCchhhCcccceeechHHHHHH---HHH
Confidence 11111111122222211 12233344456789999999999997543211 22322222 112
Q ss_pred cccccc--CCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCe
Q 012333 354 GREVFA--NGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENV 431 (466)
Q Consensus 354 ~~~~~~--~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v 431 (466)
.++... ..+...+.++.+ |+++|.|||+++|+++++|+|++||.||||||+.+.|. .++
T Consensus 384 ~~g~~~~~~~~~~~~rl~r~--L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f~-----------------~~p 444 (567)
T TIGR01792 384 QRGPLPGDSPGNDNNRVKRY--VAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAFFG-----------------VKP 444 (567)
T ss_pred hcCCCcccccCChhhhHHHH--HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcccC-----------------CCh
Confidence 121111 111122345444 99999999999999999999999999999999998443 367
Q ss_pred eEEEEccEEEEEC
Q 012333 432 VSVMCNGQWVMKN 444 (466)
Q Consensus 432 ~~v~v~G~~v~~~ 444 (466)
..||++|+++|..
T Consensus 445 ~~v~~~G~i~~~~ 457 (567)
T TIGR01792 445 DMVLKGGLIAWAI 457 (567)
T ss_pred heEEECCEEEEEe
Confidence 8999999999875
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=251.66 Aligned_cols=334 Identities=18% Similarity=0.186 Sum_probs=196.4
Q ss_pred CCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhh-------hhccCCCeEEeCCCcEEeecccccc
Q 012333 14 SLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTH 86 (466)
Q Consensus 14 ~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~-------~~~~~~~~~iD~~G~~v~PG~ID~H 86 (466)
...+..|++|+|++|++. . . +..++|.|+||+|++|++..+... .....++++||++|++|+|||||+|
T Consensus 60 ~~~~~~DlVI~Na~IiD~--~-g-i~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~H 135 (568)
T PRK13985 60 PSKEELDLIITNALIIDY--T-G-IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTH 135 (568)
T ss_pred CCCCcCCEEEECeEEECC--C-C-cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEee
Confidence 345578999999999953 2 2 345799999999999998542110 0012367899999999999999999
Q ss_pred cCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---------------HH
Q 012333 87 VHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---------------VS 151 (466)
Q Consensus 87 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---------------~~ 151 (466)
+|+.. +. .+ ..++.+||||+.++|... ..
T Consensus 136 vH~~~----------------------------P~-~~-------~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~ 179 (568)
T PRK13985 136 IHFIS----------------------------PQ-QI-------PTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 179 (568)
T ss_pred CCCCC----------------------------cc-HH-------HHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHH
Confidence 99821 11 11 237899999999853111 12
Q ss_pred HHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHH
Q 012333 152 EMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 231 (466)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 231 (466)
.+.+......+...+ . +.+.. . ... .+.+..+.+. +. +..+..+..++..+.++++.
T Consensus 180 ~ml~~a~~~pvn~gf----~--gkG~~------~---~l~----eL~el~~aGA--~G--fK~~ed~g~t~~~I~~aL~v 236 (568)
T PRK13985 180 WMLRAAEEYSMNLGF----L--GKGNS------S---NDA----SLADQIEAGA--IG--FKIHEDWGTTPSAINHALDV 236 (568)
T ss_pred HHHHHhhccCccEEE----e--cCCcc------C---CHH----HHHHHHHcCC--EE--EEECCccCCCHHHHHHHHHH
Confidence 223333222222111 0 11110 0 112 1222223222 22 33344455788899999999
Q ss_pred HHHcCCccceeccCCcchhHHHHhhcCCCCchHH-HHhhhccCCCCeeEEEeecCC----hhhHHHHHhcCCe-EEECcc
Q 012333 232 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAGVK-VSHCPA 305 (466)
Q Consensus 232 a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~g~~-~~~~p~ 305 (466)
+++++.++.+|+....... ..+ .+..+ .+......|..... ++.++.....++. .+++|+
T Consensus 237 A~~~dv~V~iHtdtlne~g------------~~E~t~aa~--~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt 302 (568)
T PRK13985 237 ADKYDVQVAIHTDTLNEAG------------CVEDTMAAI--AGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPT 302 (568)
T ss_pred HHHcCCEEEEeCCCCCCch------------hhHHHHHHh--cCCeEEEEeccCCCccchhhHHHHcCCCCcccCCCCCC
Confidence 9999999999997643221 111 11111 12222223322111 2223332222222 122222
Q ss_pred ch---------------------------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCC----CHHHHHHHH
Q 012333 306 SA---------------------------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRM----SIVDEMYLA 348 (466)
Q Consensus 306 ~~---------------------------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~----~~~~~~~~~ 348 (466)
-- .|...+..-.-+.+.|+...++||+...+.-. -.|+.-...
T Consensus 303 ~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge~~~r~~q~a~k~ 382 (568)
T PRK13985 303 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKN 382 (568)
T ss_pred CCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhCcccceeeehHHHHHHH
Confidence 11 11122233345788999999999998554321 233332221
Q ss_pred HHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCC
Q 012333 349 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRT 428 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~ 428 (466)
.+.+............++++++|+++|.|||+++|+++++|+|++||.||||||+.+.+.
T Consensus 383 ---~~~~g~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~----------------- 442 (568)
T PRK13985 383 ---KKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFG----------------- 442 (568)
T ss_pred ---HHhcCCCCCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCC-----------------
Confidence 111111111111235699999999999999999999999999999999999999998443
Q ss_pred CCeeEEEEccEEEEEC
Q 012333 429 ENVVSVMCNGQWVMKN 444 (466)
Q Consensus 429 ~~v~~v~v~G~~v~~~ 444 (466)
..+..||++|+++|..
T Consensus 443 ~~pe~vi~~G~iv~~~ 458 (568)
T PRK13985 443 VKPNMIIKGGFIALSQ 458 (568)
T ss_pred CChheEEECCEEEEcc
Confidence 4778999999999985
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=254.96 Aligned_cols=359 Identities=15% Similarity=0.180 Sum_probs=205.4
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
+|++|+|++|+++.+ .....++|+|+||+|++|++... +..++++||++|++|+|||||+|+|+...
T Consensus 1 m~~~i~~~~v~~~~~--~~~~~~~I~I~~g~I~~i~~~~~-----~~~~~~~iDa~g~~vlPG~iD~H~H~~~~------ 67 (425)
T PRK07627 1 MKIHIKGGRLIDPAA--GTDRQADLYVAAGKIAAIGQAPA-----GFNADKTIDASGLIVCPGLVDLSARLREP------ 67 (425)
T ss_pred CeEEEEeeEEECCCC--CccceeEEEEECCEEEEecCCCc-----CCCCCeEEECCCCEEeccEEeccccccCC------
Confidence 378999999996543 23456799999999999987421 11367899999999999999999998321
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCH----HHHHHHH----HH-hCCeEEeecc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV----SEMAKAV----EL-LGLRACLVQS 169 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~----~~~~~~~----~~-~g~~~~~~~~ 169 (466)
.....+ ......+.++.+||||+++++.... ....+.. .. .+...+....
T Consensus 68 ------------------g~~~~e---~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (425)
T PRK07627 68 ------------------GYEYKA---TLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGA 126 (425)
T ss_pred ------------------CccccC---cHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCe
Confidence 000000 1122346689999999999864311 1111111 11 1222221111
Q ss_pred cccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcch
Q 012333 170 TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (466)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~ 249 (466)
... + . ....+.+. ..+.+. .+..+- ....+..+...+.+.++.++..+.++.+|+.+....
T Consensus 127 ~~~-g--~--------~~~~~~~i----~~l~~~---G~~~fk-~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~ 187 (425)
T PRK07627 127 LTV-G--L--------KGEVLTEM----VELTEA---GCVGFS-QANVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLG 187 (425)
T ss_pred EEc-C--C--------CccCHHHH----HHHHhC---CEEEEE-cCCcccCCHHHHHHHHHHHHhcCCEEEEecCChhhh
Confidence 110 1 0 00111222 222222 222211 112234567788999999999999999999764321
Q ss_pred hH---------HHHhhcCCCC-----chHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECccchhhc--
Q 012333 250 NQ---------VVMDTRKVDH-----GTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCPASAMRM-- 310 (466)
Q Consensus 250 ~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p~~~~~~-- 310 (466)
.. ......+... .....+...+..+.+..+.|...- +-+.++.+++.|.. +.+||++-...
T Consensus 188 ~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~ 267 (425)
T PRK07627 188 RGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDV 267 (425)
T ss_pred hCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHh
Confidence 10 0000000000 011123333334555656665431 12445555666644 56788743210
Q ss_pred ------------------cCCccHHHHHHcCCcEEEccCCCCCCCC--C-CHHH--------HHHHHHHHhcccccccCC
Q 012333 311 ------------------LGFAPIKEMLHADICVSLGTDGAPSNNR--M-SIVD--------EMYLASLINKGREVFANG 361 (466)
Q Consensus 311 ------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~--~-~~~~--------~~~~~~~~~~~~~~~~~~ 361 (466)
.....+++.+++|...+++|||.|.... . .++. +........
T Consensus 268 ~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k~~~~~~~~~G~~g~e~~~pl~~~--------- 338 (425)
T PRK07627 268 DIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLK--------- 338 (425)
T ss_pred HHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHccCCHhhCCCCceeHHHHHHHHHH---------
Confidence 1123466788999999999999776411 0 1111 001111111
Q ss_pred CCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecccCCCCeeE
Q 012333 362 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYCMRTENVVS 433 (466)
Q Consensus 362 ~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~~~~~~v~~ 433 (466)
...+.+++++++++++|.|||+++|+ ++|+|++|++|||+++|.+ .|+..+ ..+|+..... ..+|..
T Consensus 339 ~~~~~~i~~~~~l~~~t~~pA~~lg~--~~G~l~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~sp~~g~~~---~g~v~~ 413 (425)
T PRK07627 339 WADEAKVPLARALARITSAPARVLGL--PAGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKNTPFLGYEL---PGRVRA 413 (425)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHhCC--CCCcccCCCcCCEEEECCCCcEEEChhhccccCCCCCCcCCEe---eeEEEE
Confidence 01123599999999999999999999 4699999999999999998 343221 1233322211 247999
Q ss_pred EEEccEEEEEC
Q 012333 434 VMCNGQWVMKN 444 (466)
Q Consensus 434 v~v~G~~v~~~ 444 (466)
||++|++||++
T Consensus 414 t~v~G~~v~~~ 424 (425)
T PRK07627 414 TLVAGQVAFER 424 (425)
T ss_pred EEECCEEEeec
Confidence 99999999985
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=255.40 Aligned_cols=289 Identities=19% Similarity=0.203 Sum_probs=194.9
Q ss_pred eEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc
Q 012333 69 QIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ 148 (466)
Q Consensus 69 ~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~ 148 (466)
++||++|++|+|||||+|+|+...... ...| ....+...........+.++.+||||++++++.
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~ 65 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDPGD-------LPLD---------LALPVEYRTIRATRQARAALRAGFTTVRDAGGA 65 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccCCC-------cccc---------ccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCc
Confidence 689999999999999999998542110 0000 001223333344457788999999999999865
Q ss_pred CHHHHHHHHH----HhCCeEEeecccccCCCCCCcccc---------cCChHHHHHHHHHHHHHhccCCCCCeEEEEeec
Q 012333 149 HVSEMAKAVE----LLGLRACLVQSTMDCGEGLPASWA---------VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIR 215 (466)
Q Consensus 149 ~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 215 (466)
.... .+... ..|++.+.+........+...... ........++.++.++++.+.+...++++....
T Consensus 66 ~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~ 144 (342)
T cd01299 66 DYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGG 144 (342)
T ss_pred chHH-HHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCC
Confidence 4333 22222 245666555444322111111000 001112234455666666677788898876432
Q ss_pred c--------cccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh
Q 012333 216 Q--------IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (466)
Q Consensus 216 ~--------~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~ 287 (466)
. ....+++.+.++++.+++.|+++.+|+.+.... ...+ ..+ ...+.|+..+++
T Consensus 145 ~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i--------------~~~l-~~G----~~~i~H~~~~~~ 205 (342)
T cd01299 145 VLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAI--------------RRAI-RAG----VDTIEHGFLIDD 205 (342)
T ss_pred cCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHH--------------HHHH-HcC----CCEEeecCCCCH
Confidence 1 124678999999999999999999999753211 1111 111 235899999999
Q ss_pred hhHHHHHhcCCeEEECccchhhc----------------------cCCccHHHHHHcCCcEEEccCCCC-CCCCCCHHHH
Q 012333 288 TEIGLLSRAGVKVSHCPASAMRM----------------------LGFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDE 344 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~~----------------------~~~~~~~~~~~~gi~~~~gsD~~~-~~~~~~~~~~ 344 (466)
+.++++++.|+.++.||.+.... ....+++.+.+.|+++++|||.+. ......++.+
T Consensus 206 ~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~~~~~~~~~~~~~e 285 (342)
T cd01299 206 ETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAGFPVPPHGWNARE 285 (342)
T ss_pred HHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCchhHHHHH
Confidence 99999999999999998865321 234678899999999999999874 2222344555
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 345 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
+.... . .++|+.++++++|.+||+++|+++++|+|++||.|||+|+|.|
T Consensus 286 ~~~~~--~-------------~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~ 334 (342)
T cd01299 286 LELLV--K-------------AGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGD 334 (342)
T ss_pred HHHHH--H-------------hCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCC
Confidence 54321 1 2489999999999999999999888999999999999999999
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=246.95 Aligned_cols=343 Identities=18% Similarity=0.176 Sum_probs=196.5
Q ss_pred CCCCCCCCCCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh--h-----hhccCCCeEEeCCCcEE
Q 012333 6 SGGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQIL 78 (466)
Q Consensus 6 ~~~~~~~~~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~--~-----~~~~~~~~~iD~~G~~v 78 (466)
++|++...+..+..|++|+|++|+++. .. +..++|.|+||+|++|++..+.. . ....+++++||++|++|
T Consensus 55 ~~~~~~~~~~~~~~DlVItNa~IIDp~--~G-i~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IV 131 (569)
T PRK13308 55 MGMAPGVTSADGALDFVLCNVTVIDPV--LG-IVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIA 131 (569)
T ss_pred CCCCCCCCCccCcCCEEEECeEEEcCC--CC-eEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEE
Confidence 444333332335689999999999532 22 35679999999999999754211 0 01123678999999999
Q ss_pred eecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc--------cC-
Q 012333 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------QH- 149 (466)
Q Consensus 79 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~--------~~- 149 (466)
+|||||+|+|+.. +.. .+.++.+||||+++++. ..
T Consensus 132 tPG~ID~HVH~~~----------------------------Pg~--------~~aALagGVTTVi~gg~gPt~p~~t~g~ 175 (569)
T PRK13308 132 TPGAIDVHVHFDS----------------------------AQL--------VDHALASGITTMLGGGLGPTVGIDSGGP 175 (569)
T ss_pred EeCEEEeeeCCCC----------------------------ccH--------HHHHHcCCCcEEecCCcCCCCCCCCCCH
Confidence 9999999999821 110 14589999999998531 11
Q ss_pred --HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHH
Q 012333 150 --VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLE 227 (466)
Q Consensus 150 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 227 (466)
+..+.+......++..+. +.+.. . ... .+.++.+.+...++. +..+..+++.+.+
T Consensus 176 ~~i~~~l~aa~~~pvN~g~~------gkG~~------s---~~a----eL~eli~aGA~GfKi----~ed~g~t~~~i~~ 232 (569)
T PRK13308 176 FNTGRMLQAAEAWPVNFGFL------GRGNS------S---KPA----ALIEQVEAGACGLKI----HEDWGAMPAAIDT 232 (569)
T ss_pred HHHHHHHHHHhcCCccEEEE------cCCcc------c---CHH----HHHHHHHCCCCEEee----cCCCCCCHHHHHH
Confidence 222333333222222111 11110 0 011 223333333333332 2333468889999
Q ss_pred HHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHH-HHhhhccCCCCeeEEEeecC----ChhhHHHHHhcCCeE-E
Q 012333 228 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKIEFLQNNLLSAHTVWV----NHTEIGLLSRAGVKV-S 301 (466)
Q Consensus 228 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~g~~~-~ 301 (466)
+++.|++++.++.+|+....... ..+ .+..+. +....+.|.... .++.++..-..++.. +
T Consensus 233 aL~~A~~~dv~VaiHadtlne~g------------~~E~t~~a~~--gr~iH~~H~egaggghapd~l~~~~~~n~lp~s 298 (569)
T PRK13308 233 CLEVADEYDFQVQLHTDTLNESG------------FVEDTLAAIG--GRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPSS 298 (569)
T ss_pred HHHHHHhcCCEEEEeCCCcCcch------------HHHHHHHHhc--CCeEEEEeccCCccCchhHHHHHhCCCCccCCC
Confidence 99999999999999997633221 111 111111 222233332221 123333333333321 2
Q ss_pred ECccch---------------------------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHH
Q 012333 302 HCPASA---------------------------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 348 (466)
Q Consensus 302 ~~p~~~---------------------------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~ 348 (466)
++|+-- .|...+..-.-+.+.|+..+++||+...+ -+++.++.+
T Consensus 299 tnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~mg---r~~e~i~r~ 375 (569)
T PRK13308 299 TNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQGMG---RIAEVIART 375 (569)
T ss_pred CCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhccceeeccCchhhcCCcEEEEecchHHHh---HHHHHHHHH
Confidence 222211 11122233345788999999999997653 344554443
Q ss_pred HHHhccccc----ccCC-CCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCccccee
Q 012333 349 SLINKGREV----FANG-TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLV 423 (466)
Q Consensus 349 ~~~~~~~~~----~~~~-~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~ 423 (466)
+...+.... .... .......-+...|+++|.|||+++|+++++|+|++||.||||+|+.+.+.
T Consensus 376 ~q~a~~~~~~~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~fg------------ 443 (569)
T PRK13308 376 WQLASKMKDQRGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFFG------------ 443 (569)
T ss_pred HHHHHHHhhcCCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcccC------------
Confidence 333221111 0000 00011122334699999999999999988999999999999999998332
Q ss_pred cccCCCCeeEEEEccEEEEEC
Q 012333 424 YCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 424 ~~~~~~~v~~v~v~G~~v~~~ 444 (466)
.++..||++|+++|..
T Consensus 444 -----v~p~~ti~~G~iv~~~ 459 (569)
T PRK13308 444 -----IKPELVIKGGFPAWAA 459 (569)
T ss_pred -----CCeeEEEECCEEEEec
Confidence 3688999999999863
|
|
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=256.03 Aligned_cols=342 Identities=16% Similarity=0.136 Sum_probs=201.5
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchh--hh-----hhccCCCeEEeCCCcEEeecccccccCC
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI--LQ-----QFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~--~~-----~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
...|++|+|++|++.. + +..+||+|+||+|++|++.... +. ...++++++||++|++|+|||||+|+|+
T Consensus 332 ~~~DlVItNa~IID~~--G--i~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf 407 (837)
T PLN02303 332 DSLDTVITNAVIIDYT--G--IYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHF 407 (837)
T ss_pred CcCCEEEeCeEEECCC--C--cEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCC
Confidence 3579999999999632 2 3567999999999999975321 01 0112357899999999999999999998
Q ss_pred cccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc------------CHH---HHH
Q 012333 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------HVS---EMA 154 (466)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~------------~~~---~~~ 154 (466)
.. +... ...+.+|+||++..|.. ... .+.
T Consensus 408 ~~----------------------------Pg~~--------~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L 451 (837)
T PLN02303 408 IC----------------------------PQLA--------TEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLML 451 (837)
T ss_pred CC----------------------------CcHH--------HHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHH
Confidence 21 1111 22455555555554311 111 222
Q ss_pred HHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHH
Q 012333 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 234 (466)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~ 234 (466)
+..+...++..+.. .+.. ....+.. ++.+.+ +.. +..+..+..+++.+.++++.+++
T Consensus 452 ~aa~~~pvn~Gf~g------kG~~---------s~l~eL~----elieaG---a~G-fK~h~d~gvTpelL~raLe~Ake 508 (837)
T PLN02303 452 QSTDDLPLNFGFTG------KGNT---------AKPEGLH----EIIKAG---AMG-LKLHEDWGTTPAAIDNCLDVAEE 508 (837)
T ss_pred HhcccCCCcEEEEc------cCcc---------cCHHHHH----HHHHcC---cEE-EEECCCCCCCHHHHHHHHHHHHH
Confidence 22222222222111 0100 1112222 222222 221 44445557789999999999999
Q ss_pred cCCccceeccCCcch---hHHHHhhcCCCCchHHHHhhhccCCCCe-----------eEEEeecC-ChhhHHHHHhcCCe
Q 012333 235 FKTGIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEFLQNNL-----------LSAHTVWV-NHTEIGLLSRAGVK 299 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~H~~~~-~~~~~~~~~~~g~~ 299 (466)
+++++++|+.. ..+ .+.....+ +..+++.++..+.++.+- ++...+.- .+.....+.++--.
T Consensus 509 lGVpVaIHAEd-LnE~G~vE~t~~a~--G~RpIh~~h~~Ga~gghapdi~~~~~~~nvlpsstnpt~p~t~nt~~e~~dm 585 (837)
T PLN02303 509 YDIQVTIHTDT-LNESGCVEHSIAAF--KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTKNTIDEHLDM 585 (837)
T ss_pred cCCEEEEecCc-ccccchHHHHHHHH--CCChHHHHHhcCCCCCCCcHHHHhcCCCCccCCCCCCCCCCccCchhhhcCe
Confidence 99999999765 323 33333333 345788888888776421 11110000 01111112222112
Q ss_pred EEECccch-------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCC----CHHHHHHHHHHHhcccccccCCC
Q 012333 300 VSHCPASA-------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRM----SIVDEMYLASLINKGREVFANGT 362 (466)
Q Consensus 300 ~~~~p~~~-------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
+.+|..-+ .|...+..-.-+.+.|+..+++||+...+.-. -.|+.-... ...+.......
T Consensus 586 ~m~~h~l~~~~~edvafa~srir~~tiaaed~l~d~G~~s~~~SDs~amgr~ge~i~r~~q~A~k~---~~~~g~l~~~~ 662 (837)
T PLN02303 586 LMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVITRTWQTAHKM---KSQRGALEPRG 662 (837)
T ss_pred EEeecCCCCCCcchhhhhhhhccchhhccchhhhccCCEEEEeccchhhCcccceeeehHHHHHHH---HHhcCCCCCcc
Confidence 23332211 12223344455788999999999998554321 234332222 22222221111
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 363 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 363 ~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
......++.++|+++|.|||+++|+++++|+|++||.||||||+++.+. .++..||++|++||
T Consensus 663 ~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~fg-----------------~~~~~vi~~G~ivy 725 (837)
T PLN02303 663 ADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFFG-----------------AKPEMVIKGGQIAW 725 (837)
T ss_pred ccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccccC-----------------CCeeEEEECCEEEE
Confidence 1235688999999999999999999999999999999999999987332 47899999999999
Q ss_pred EC
Q 012333 443 KN 444 (466)
Q Consensus 443 ~~ 444 (466)
..
T Consensus 726 ~~ 727 (837)
T PLN02303 726 AQ 727 (837)
T ss_pred cc
Confidence 86
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=238.76 Aligned_cols=387 Identities=15% Similarity=0.183 Sum_probs=235.2
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
...++|+|++|++-|.. ..+||+++||.|.+|++...+ | .+.++||+.|++|+||.||.|+|+-+.+.
T Consensus 13 s~rllikgg~vvN~d~~----~~aDV~vedGiI~~vg~~l~i----p-gg~~~ida~g~~ViPGgID~Hthlq~p~~--- 80 (522)
T KOG2584|consen 13 SNRLLIKGGRVVNDDQS----FKADVYVEDGIIKEVGENLII----P-GGVKVIDATGKMVIPGGIDPHTHLQMPFM--- 80 (522)
T ss_pred ccceeeeCCEEEccCCc----eeeeEEeccCEEEEecccEEc----C-CCceEEecCCcEEecCccCccceeccccC---
Confidence 45689999999974432 456999999999999998654 3 37899999999999999999999943211
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHH-hCCeEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVEL-LGLRACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~ 172 (466)
. .+. ........++++..|+|++.|+--+ ++....+..++ +... .++|
T Consensus 81 ------------------G-~ts---~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k-----~cCD 133 (522)
T KOG2584|consen 81 ------------------G-MTS---VDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPK-----VCCD 133 (522)
T ss_pred ------------------C-ccc---hhhhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCc-----eeee
Confidence 1 111 1122234467899999999996422 22222222222 1112 2222
Q ss_pred CCCCCC-cccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhH
Q 012333 173 CGEGLP-ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (466)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 251 (466)
.+.... ..|. ..+.+..+.+. ++.+-..++++++....+..+++++.+.+..+++.|...++|+.......+
T Consensus 134 yglhv~It~W~-----~~v~eem~~l~--~ekGvnsF~~fmayk~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae 206 (522)
T KOG2584|consen 134 YGLHVGITWWS-----PSVKEEMEILV--KEKGVNSFKFFMAYKDLYMVRDSELYEALKVCAELGALAMVHAENGDAIAE 206 (522)
T ss_pred eeeeEeeeecC-----cchHHHHHHHh--hhcCcceEEeeeeeccccccCHHHHHHHHHHHhhcchhheehhhcchhhhh
Confidence 222111 1111 12222233333 455667788889999999999999999999999999999999976543222
Q ss_pred HHHh--hcCCCC--------c-------hHHHHhhhccCCCCeeEEEeecCCh-hhHHHHHhcCCeEEECccchh-----
Q 012333 252 VVMD--TRKVDH--------G-------TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKVSHCPASAM----- 308 (466)
Q Consensus 252 ~~~~--~~~~~~--------~-------~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~~p~~~~----- 308 (466)
.... ..++.. . ...++......+-...+.|....+. +.+.++++.|..+.-.|..+-
T Consensus 207 ~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg 286 (522)
T KOG2584|consen 207 GQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDG 286 (522)
T ss_pred hhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHhcCceeecccchhhhcccc
Confidence 1111 111111 0 0112233333334456778777654 456666666655444443220
Q ss_pred --------------------hc--cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHH--HHHhcccccccC----
Q 012333 309 --------------------RM--LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA--SLINKGREVFAN---- 360 (466)
Q Consensus 309 --------------------~~--~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---- 360 (466)
|. ....-+..++..|..-..||||++.+... ..+... .....+-.....
T Consensus 287 ~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhctf~~~q---KalgKddFt~ip~GvnGvedrMsv 363 (522)
T KOG2584|consen 287 SHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTTEQ---KALGKDDFTKIPNGVNGVEDRMSV 363 (522)
T ss_pred hhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCCCCCHHH---HhhccCccccCCCcccccccccee
Confidence 00 01123557889999888899998865211 110000 000001000000
Q ss_pred ---CCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC--------CcCCcccceecccCCC
Q 012333 361 ---GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV--------PVHDRITSLVYCMRTE 429 (466)
Q Consensus 361 ---~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~--------~~~~~~~~~~~~~~~~ 429 (466)
.-.....|++.+.+.-.++|+|++++|++++|+|++|.+|||||||++..... ...+.+..+.. .+
T Consensus 364 iwekgv~~G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d~NifEGm~~---~G 440 (522)
T KOG2584|consen 364 IWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSANDFNIFEGMTV---HG 440 (522)
T ss_pred eeehhcccCccCcccEEEEecccchhheeccCcCceecccCCCcEEEECCCcceEeccccccccccceeecCcEe---cc
Confidence 01122457788999999999999999999999999999999999999832211 11222222211 25
Q ss_pred CeeEEEEccEEEEECCee-eeccHHHHH
Q 012333 430 NVVSVMCNGQWVMKNKKI-LLLMRGRLF 456 (466)
Q Consensus 430 ~v~~v~v~G~~v~~~g~~-~~~~~~~~~ 456 (466)
.+..||.+||+||++|++ +....|+++
T Consensus 441 ~plvtIsrGriv~eng~~~v~~g~G~fi 468 (522)
T KOG2584|consen 441 VPLVTISRGRVVYENGNLVVTEGSGRFI 468 (522)
T ss_pred eeEEEEeCCeEEEecCcEEEecCCCcee
Confidence 799999999999999986 344444443
|
|
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-30 Score=250.45 Aligned_cols=372 Identities=18% Similarity=0.206 Sum_probs=215.1
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.|++|+|++|++.+ . +.+++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+...
T Consensus 1 ~~dl~i~n~~v~~~~---~-~~~~~v~I~dg~I~~i~~~~~~----~-~~~~~id~~g~~v~PG~ID~H~H~~~~----- 66 (443)
T PRK02382 1 MRDALLKDGRVYYNN---S-LQPRDVRIDGGKITAVGKDLDG----S-SSEEVIDARGMLLLPGGIDVHVHFREP----- 66 (443)
T ss_pred CceEEEECCEEEeCC---C-ceEEEEEEECCEEEEecCCCCC----C-CCCeEEECCCCEEcCCEeeeeeeccCC-----
Confidence 478999999999632 2 3467999999999999764221 1 246899999999999999999997321
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHHHHhCCeEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~ 172 (466)
.....+.+ ......++.+||||+++++... ...+........-+........
T Consensus 67 -------------------g~~~~e~~---~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~- 123 (443)
T PRK02382 67 -------------------GYTHKETW---YTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGIN- 123 (443)
T ss_pred -------------------CCCchhhH---HHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEE-
Confidence 01111111 2234668899999999986431 1222222222222211111111
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCe-EEEEee-cccccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRI-RIWFGI-RQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
+ +.. .. .++ +..+.+.+...+ +++... ......+++.+.++++.+++.+.++.+|+.+.....
T Consensus 124 -~-~~~-----~~----~~~----l~~l~~~gv~~~gkv~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~ 188 (443)
T PRK02382 124 -G-GVT-----GN----WDP----LESLWERGVFALGEIFMADSTGGMGIDEELFEEALAEAARLGVLATVHAEDEDLFD 188 (443)
T ss_pred -e-eec-----cc----hhh----HHHHHhcCccceeEEEEEecCCCcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHH
Confidence 0 000 00 111 122222222222 333322 122345678899999999999999999997643321
Q ss_pred HHHHhhcC--------CCCch-------HHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhh------
Q 012333 251 QVVMDTRK--------VDHGT-------VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR------ 309 (466)
Q Consensus 251 ~~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~------ 309 (466)
.......+ ..... ...+......+.+..+.|.. +.+.++.+++..+...+||+....
T Consensus 189 ~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~s--s~~~~~~i~~~~vt~ev~ph~L~l~~~~~~ 266 (443)
T PRK02382 189 ELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHIS--TPEGVDAARREGITCEVTPHHLFLSRRDWE 266 (443)
T ss_pred HhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHHHHCCcEEEEchhhhhcCHHHHh
Confidence 11110000 00000 11222223334444444443 346677776666778888884310
Q ss_pred -c----cCCcc---------HHHHHHcCCcEEEccCCCCCCCC------------CCHHHHHHHHHHHhcccccccCCCC
Q 012333 310 -M----LGFAP---------IKEMLHADICVSLGTDGAPSNNR------------MSIVDEMYLASLINKGREVFANGTT 363 (466)
Q Consensus 310 -~----~~~~~---------~~~~~~~gi~~~~gsD~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (466)
. .-.+| +.+.++.|...+++|||.|+... +.-.+.+.. .+... .
T Consensus 267 ~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~~~~~~~~~G~~g~e~~~~-~~~~~---------~ 336 (443)
T PRK02382 267 RLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDADIWDAPSGVPGVETMLP-LLLAA---------V 336 (443)
T ss_pred ccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhcCChhhCCCCcccHHHHHH-HHHHH---------H
Confidence 0 01123 34457789999999999987421 011111111 11111 0
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCC-CCCC-------cCCcccceecccCCCCeeEEE
Q 012333 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW-PMVP-------VHDRITSLVYCMRTENVVSVM 435 (466)
Q Consensus 364 ~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~-~~~~-------~~~~~~~~~~~~~~~~v~~v~ 435 (466)
...+++++++++++|.+||+++|+. .+|+|++|++|||+|+|.+.. ...+ ..+|+... ....+..||
T Consensus 337 ~~~~~~l~~~~~~~t~~pA~~~g~~-~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~s~~~~sp~~g~----~~~~v~~ti 411 (443)
T PRK02382 337 RKNRLPLERVRDVTAANPARIFGLD-GKGRIAEGYDADLVLVDPDAAREIRGDDLHSKAGWTPFEGM----EGVFPELTM 411 (443)
T ss_pred HcCCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCcEEEcHHHhcccCCCCCcCCC----EeceEEEEE
Confidence 1235999999999999999999995 679999999999999998732 2111 11122211 113678999
Q ss_pred EccEEEEECCeeeecc-HHHHHHH
Q 012333 436 CNGQWVMKNKKILLLM-RGRLFQL 458 (466)
Q Consensus 436 v~G~~v~~~g~~~~~~-~~~~~~~ 458 (466)
++|++||++|++..-. .|+++++
T Consensus 412 v~G~~v~~~~~~~~~~~~G~~~~~ 435 (443)
T PRK02382 412 VRGTVVWDGDDINAKRGRGEFLRG 435 (443)
T ss_pred ECCEEEEECCEEecCCCCceEeCC
Confidence 9999999999987543 5776654
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-30 Score=244.05 Aligned_cols=358 Identities=18% Similarity=0.242 Sum_probs=211.3
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|+++++. + ....+||.|++|+|++|+..... . ++.++||++|++|+|||||.|+|+..
T Consensus 1 ~~~lIk~~~iv~~-~---~~~~~di~i~~g~I~~Ig~~l~~----~-~~~~iiD~~g~~v~PG~ID~HVH~re------- 64 (430)
T COG0044 1 MDLLIKNARVVDP-G---EDEVADILIKDGKIAAIGKNLEP----T-SGAEIIDAKGLLVLPGLVDLHVHFRE------- 64 (430)
T ss_pred CcEEEeccEEEcC-C---CceEecEEEECCEEEEeccCCCC----C-CCCcEEECCCCEEccCeeEEEEecCC-------
Confidence 4689999999964 1 23567999999999999986432 1 47789999999999999999999932
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCH-----HHHHHHHHHh---C-CeEEeecc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELL---G-LRACLVQS 169 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~-----~~~~~~~~~~---g-~~~~~~~~ 169 (466)
.....-+ ......++++++|||++++|+.... ..+....... . +.......
T Consensus 65 -----------------pg~~~ke---~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~ 124 (430)
T COG0044 65 -----------------PGFEHKE---TFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGG 124 (430)
T ss_pred -----------------CCcchhh---hHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEE
Confidence 1111111 2344567799999999999874321 1211111111 1 11111111
Q ss_pred cccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcch
Q 012333 170 TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (466)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~ 249 (466)
.. .... . ..+..+... ...++.+..... .......+++.++.+...+..+.+|+.+....
T Consensus 125 it-------~~~~-----~----~~~~~~~~~---~~g~~~F~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~ 184 (430)
T COG0044 125 LT-------KGNL-----G----KLELTERGV---EAGFKGFMDDST-GALDDDVLEEALEYAAELGALILVHAEDDDLI 184 (430)
T ss_pred Ee-------cccc-----c----hhhhhhhhh---ccceEEEecCCc-CcCCHHHHHHHHHHHHhcCCeEEEecCChhHh
Confidence 11 1000 0 001111111 123344443333 44677889999999999999999999765321
Q ss_pred hH-HHHh------hcCCCCch-------HHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCeE--EECccchhhc--
Q 012333 250 NQ-VVMD------TRKVDHGT-------VTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKV--SHCPASAMRM-- 310 (466)
Q Consensus 250 ~~-~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~--~~~p~~~~~~-- 310 (466)
.. .... ..-.+... ...+......+.+..+.|...- +-+.++.++..|+.+ .+||+.-.--
T Consensus 185 ~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~HiSt~~sv~li~~ak~~g~~vt~EvtphHL~l~~~ 264 (430)
T COG0044 185 AEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKESVELIRAAKAEGIRVTAEVTPHHLLLDEE 264 (430)
T ss_pred hhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHHHHHHhhcCCceEEeecchheEccHh
Confidence 11 0100 00011111 1122222233444444444321 123355555555554 4666633100
Q ss_pred ------------------cCCccHHHHHHcCCcEEEccCCCCCCCCCCH--HH---------HHHHHH---HHhcccccc
Q 012333 311 ------------------LGFAPIKEMLHADICVSLGTDGAPSNNRMSI--VD---------EMYLAS---LINKGREVF 358 (466)
Q Consensus 311 ------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~--~~---------~~~~~~---~~~~~~~~~ 358 (466)
.....+++.+..|...+++|||.|+....+- +. +..... ++.+
T Consensus 265 ~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~~~f~~ap~G~~glE~~lpl~l~lv~~----- 339 (430)
T COG0044 265 DIEDLGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLTLVKK----- 339 (430)
T ss_pred HhhccCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhccchhhCCCCCccHHHHHHHHHHHHHc-----
Confidence 1112456778999999999999987532111 00 011111 2222
Q ss_pred cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCC--Cc-----CCcccceecccCCCC
Q 012333 359 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMV--PV-----HDRITSLVYCMRTEN 430 (466)
Q Consensus 359 ~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~--~~-----~~~~~~~~~~~~~~~ 430 (466)
..+|+.++++++|.|||+++||.. +|.|++|++|||+|+|.+ .|+.. .+ .+|+....+ ..+
T Consensus 340 -------g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk~~~sPf~G~~~---~g~ 408 (430)
T COG0044 340 -------GRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFEGFEL---KGR 408 (430)
T ss_pred -------CCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCCCeEEchhhhccccCCCCcCCCEE---eee
Confidence 249999999999999999999965 788999999999999998 33222 12 223322211 368
Q ss_pred eeEEEEccEEEEECCeee
Q 012333 431 VVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 431 v~~v~v~G~~v~~~g~~~ 448 (466)
|.+|+++|+++|.+++..
T Consensus 409 v~~Ti~rG~~v~~~~~~~ 426 (430)
T COG0044 409 VVATILRGKVVYEDGEVI 426 (430)
T ss_pred EEEEEECCEEEEECCcEe
Confidence 999999999999999754
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=251.62 Aligned_cols=365 Identities=15% Similarity=0.169 Sum_probs=207.1
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
++|++|+|++|++.+ . . ..++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+....
T Consensus 2 ~~~~~i~n~~vi~~~--~-~-~~~~i~I~dg~I~~i~~~~~-------~~~~~iD~~G~~v~Pg~iD~h~h~~~~~---- 66 (449)
T PRK08044 2 SFDLIIKNGTVILEN--E-A-RVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSPGMVDAHTHISEPG---- 66 (449)
T ss_pred CceEEEECcEEEcCC--C-C-EEEEEEEECCEEEEecCCCC-------CCCeEEECCCCEEcCCeeccccccCCCC----
Confidence 468999999999733 2 2 34699999999999986421 2568999999999999999999983210
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-c-----CHHHHHHHHHHhCCeEEeecccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-Q-----HVSEMAKAVELLGLRACLVQSTM 171 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~-----~~~~~~~~~~~~g~~~~~~~~~~ 171 (466)
....+ ........++..||||+.+++. . ....+....+...-+........
T Consensus 67 --------------------~~~~e---~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~ 123 (449)
T PRK08044 67 --------------------RSHWE---GYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQL 123 (449)
T ss_pred --------------------ccccc---cHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEE
Confidence 00011 2223446689999999999872 1 22222222222211111111100
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecc-------cccCCHHHHHHHHHHHHHcCCccceecc
Q 012333 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ-------IMNATDRLLLETRDMAREFKTGIHMHVA 244 (466)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 244 (466)
. +... . ...+... +.+.+-..++.++...+ ....++..+.+.++.+++.|.++.+|+.
T Consensus 124 -~--~~~~-----~---~~~ei~~----l~~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E 188 (449)
T PRK08044 124 -G--GLVS-----Y---NLDRLHE----LDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCE 188 (449)
T ss_pred -e--eeCC-----C---CHHHHHH----HHHcCceEEEEEecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecC
Confidence 0 1110 0 1111122 22223334554433211 1223556778888888889999999997
Q ss_pred CCcchhHHH--HhhcC--------CCCch-------HHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECc
Q 012333 245 EIPYENQVV--MDTRK--------VDHGT-------VTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCP 304 (466)
Q Consensus 245 ~~~~~~~~~--~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p 304 (466)
+........ ....+ ..... ...+......+.+..+.|...- +-+.++.+++.|.. ..+||
T Consensus 189 ~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~ 268 (449)
T PRK08044 189 NALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCP 268 (449)
T ss_pred CHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcCh
Confidence 654321111 00001 00001 1122222233334445554421 12555666666644 45677
Q ss_pred cchhhc--------------------cCCccHHHHHHcCCcEEEccCCCCCCCCC---CHHHH--------HHHHHHHhc
Q 012333 305 ASAMRM--------------------LGFAPIKEMLHADICVSLGTDGAPSNNRM---SIVDE--------MYLASLINK 353 (466)
Q Consensus 305 ~~~~~~--------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~---~~~~~--------~~~~~~~~~ 353 (466)
+....- .....+++.+..|...+++|||.|+.... ++++. ..+...+..
T Consensus 269 h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~~~~~~ 348 (449)
T PRK08044 269 HYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDE 348 (449)
T ss_pred hhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChHHccCChhhCCCCceEHHHHHHHHHHH
Confidence 643210 11234555677999999999999874211 12211 111111110
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecc
Q 012333 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYC 425 (466)
Q Consensus 354 ~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~ 425 (466)
. ....+++++++++++|.|||++||+. ++|+|++|++|||+|+|.+ .|+..+ -.+|+....+
T Consensus 349 ~--------v~~~~l~~~~~v~~~s~npA~~lgl~-~~G~i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l- 418 (449)
T PRK08044 349 A--------VQKRGMSLPMFGKLMATNAADIFGLQ-QKGRIAPGKDADFVFIQPNSSYVLKNEDLEYRHKVSPYVGRTI- 418 (449)
T ss_pred H--------HHcCCCCHHHHHHHHHHhHHHHhCCC-CCCcCCCCCccCEEEECCCCcEEECHHHccccCCCCCCCCCEE-
Confidence 0 11235999999999999999999994 4799999999999999997 333221 1223222211
Q ss_pred cCCCCeeEEEEccEEEEECCee
Q 012333 426 MRTENVVSVMCNGQWVMKNKKI 447 (466)
Q Consensus 426 ~~~~~v~~v~v~G~~v~~~g~~ 447 (466)
.++|..||++|++||++++.
T Consensus 419 --~G~v~~t~~~G~~v~~~~~~ 438 (449)
T PRK08044 419 --GARITKTILRGDVIYDIEQG 438 (449)
T ss_pred --eeeEEEEEECCEEEEECCcc
Confidence 36899999999999999874
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=241.99 Aligned_cols=323 Identities=20% Similarity=0.235 Sum_probs=190.6
Q ss_pred EEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCC
Q 012333 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (466)
Q Consensus 22 lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~ 101 (466)
+|+|++|++.++ +.. ++|.|+||+|++|++... ...++||++|++|+|||||+|+|.........
T Consensus 1 ~i~~~~vv~~~~---~~~-~~i~i~dg~I~~i~~~~~-------~~~~~iD~~G~~v~PGlID~H~h~~e~~~~pr---- 65 (376)
T TIGR02318 1 VLSNARLVLEDE---VVE-GSVVIEDGAIADIGEGPV-------ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPR---- 65 (376)
T ss_pred CEeCeEEECCCc---eEe-eeEEEECCEEEEecCCCC-------CCCceEeCCCCEEeccEEEcccCccccCcCCC----
Confidence 589999997543 333 499999999999987422 24568999999999999999999843111000
Q ss_pred CchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc--------cCHH---HHHHHHHHhCCe--EE---
Q 012333 102 DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------QHVS---EMAKAVELLGLR--AC--- 165 (466)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~--------~~~~---~~~~~~~~~g~~--~~--- 165 (466)
+ ...+...+ ......++++.+||||++++.. .... ...++.....-+ ..
T Consensus 66 p------------~~~~~~~~---~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 130 (376)
T TIGR02318 66 P------------GVDWPIDA---AIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADH 130 (376)
T ss_pred C------------CCCcchHH---HHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhc
Confidence 0 00111111 2223446688999999999741 1111 122111221111 10
Q ss_pred -eeccc--------------ccCCC-C-------CCcccccCChHHHHH-----------HHHHHHHHhccCCCCCeEEE
Q 012333 166 -LVQST--------------MDCGE-G-------LPASWAVRTTDDCIQ-----------SQKELYAKHHHAADGRIRIW 211 (466)
Q Consensus 166 -~~~~~--------------~~~~~-~-------~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~ 211 (466)
+...+ ...+. + .+..+.......... +..+.+.+....
T Consensus 131 ~~h~~~e~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~-------- 202 (376)
T TIGR02318 131 RLHLRCELPNEEVLPELEELIDDPRVDLISLMDHTPGQRQFRDLEKYREYYRGKRGLSDDEFDEIVEERIAR-------- 202 (376)
T ss_pred eeEEEEEecCccHHHHHHHHhcCCCcCEEEEeCCCCCcccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH--------
Confidence 00000 00000 0 000000000000000 000001000000
Q ss_pred EeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHH
Q 012333 212 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291 (466)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~ 291 (466)
......+.+.+++++|+++|+++..|..+.......... .+. ....| .++.+..+
T Consensus 203 -----~~~~~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~~--------------~Gv----~~~E~--~~t~e~a~ 257 (376)
T TIGR02318 203 -----RAEYGLANRSEIAALARARGIPLASHDDDTPEHVAEAHD--------------LGV----TISEF--PTTLEAAK 257 (376)
T ss_pred -----HhhccHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHH--------------CCC----Chhcc--CCCHHHHH
Confidence 001236778889999999999999998654432211111 111 11233 36888899
Q ss_pred HHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCC
Q 012333 292 LLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 368 (466)
Q Consensus 292 ~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (466)
.+.+.|+.+..+.+...+. .+..+++.+++.|+.++++||+.+. .++..+.... . ...++
T Consensus 258 ~~~~~G~~v~~~~p~~~r~~~~~~~~~l~~~~~~G~~~~l~SD~~p~----~~l~~~~~~~-~------------~~~gl 320 (376)
T TIGR02318 258 EARSLGMQILMGAPNIVRGGSHSGNLSARELAHEGLLDVLASDYVPA----SLLLAAFQLA-D------------DVEGI 320 (376)
T ss_pred HHHHcCCeEEECCccccccccccchHHHHHHHHCCCcEEEEcCCCcH----HHHHHHHHHH-H------------hhcCC
Confidence 9999999988775433332 2356788999999999999999653 2222221110 1 11258
Q ss_pred CHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 369 s~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
++.++++++|.|||+++|++ ++|+|++|++|||+++|... ....+..||++|++||
T Consensus 321 ~~~~al~~~T~npA~~lgl~-~~G~I~~G~~ADlvvvd~~~-----------------~~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 321 PLPQAVKMVTKNPARAVGLS-DRGSIAPGKRADLVRVHRVD-----------------GVPRIRAVWRAGRRVY 376 (376)
T ss_pred CHHHHHHHHhHHHHHHcCCC-CCCcCCCCCcccEEEEcCCC-----------------CCccceEEEECCEEeC
Confidence 99999999999999999996 57999999999999999951 0137899999999986
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=241.45 Aligned_cols=332 Identities=18% Similarity=0.202 Sum_probs=189.3
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh-------hhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~-------~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
+.+|++|+|++|++.. . +..++|.|+||+|++|++..+.. ......++++||++|++|+|||||+|+|+
T Consensus 63 ~~~DlVI~Na~IiD~~---g-i~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~ 138 (567)
T cd00375 63 DVLDLVITNALIIDYT---G-IYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHF 138 (567)
T ss_pred ccCCEEEECeEEECCC---C-cEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCC
Confidence 4579999999999532 2 34579999999999999754210 01122357899999999999999999998
Q ss_pred cccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc---------------CHHHHH
Q 012333 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---------------HVSEMA 154 (466)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---------------~~~~~~ 154 (466)
. .+.. ...++.+||||++++|.. .+..+.
T Consensus 139 ~----------------------------~P~~--------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml 182 (567)
T cd00375 139 I----------------------------CPQQ--------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRML 182 (567)
T ss_pred C----------------------------CccH--------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHH
Confidence 2 1111 245889999999996211 112223
Q ss_pred HHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHH
Q 012333 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 234 (466)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~ 234 (466)
+......+...+.. .+. ...+. .+.++.+.+... +..+..+..++..+.++++.+++
T Consensus 183 ~aa~~~pin~g~~g------kg~---------~~~l~----eL~e~~~aGA~G----fK~~eD~g~t~~~i~~aL~~A~~ 239 (567)
T cd00375 183 QAADGLPVNIGFLG------KGN---------GSSPD----ALAEQIEAGACG----LKLHEDWGATPAAIDTCLSVADE 239 (567)
T ss_pred HHhhcCCceEEEEe------cCc---------cccHH----HHHHHHHcCCEE----EEecCCCCCCHHHHHHHHHHHHh
Confidence 33332222221111 111 01111 222222332222 22333345688999999999999
Q ss_pred cCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC----hhhHHHHHhcCCe-EEECccch--
Q 012333 235 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAGVK-VSHCPASA-- 307 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~g~~-~~~~p~~~-- 307 (466)
++.++.+|+....... ..+. ......+......|..... ++.++..-..++. .+++|+--
T Consensus 240 ~dv~VaiHadtlne~g------------~~E~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t 306 (567)
T cd00375 240 YDVQVAIHTDTLNESG------------FVED-TIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPSSTNPTRPFT 306 (567)
T ss_pred hCCEEEEECCCCCcch------------HHHH-HHHHhcCCeEEEEecCCCCcccchHHHHhcCCCCcccCCCCCCCCCc
Confidence 9999999997633211 1111 1111112222222322111 2222222222222 11222211
Q ss_pred -------------------------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHH-HHHHHhccc
Q 012333 308 -------------------------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY-LASLINKGR 355 (466)
Q Consensus 308 -------------------------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~-~~~~~~~~~ 355 (466)
.|...+..-.-+.+.|+..+++||+...+.-...+...+ .+....+.+
T Consensus 307 ~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge~~~r~~q~a~k~~~~~ 386 (567)
T cd00375 307 VNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGEVILRTWQTAHKMKAQR 386 (567)
T ss_pred cCchhhhcCeEEeecCCCCCCcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcCccceeeechHHHHHHHHHhc
Confidence 111222333457889999999999975443222221111 111111111
Q ss_pred ccccCCCCCCCCCCH---HHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCee
Q 012333 356 EVFANGTTDPAALPA---ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 432 (466)
Q Consensus 356 ~~~~~~~~~~~~ls~---~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 432 (466)
+.. .+ .....+. .++|+++|.|||+++|+++++|+|++||.||||||+.+.+. .++.
T Consensus 387 g~~-~~--~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f~-----------------~~p~ 446 (567)
T cd00375 387 GPL-PE--DSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFFG-----------------VKPE 446 (567)
T ss_pred CCC-Cc--ccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcccC-----------------CCee
Confidence 111 00 0112344 44599999999999999999999999999999999998432 4688
Q ss_pred EEEEccEEEEEC
Q 012333 433 SVMCNGQWVMKN 444 (466)
Q Consensus 433 ~v~v~G~~v~~~ 444 (466)
.||++|+++|..
T Consensus 447 ~vi~~G~iv~~~ 458 (567)
T cd00375 447 MVLKGGFIAYAQ 458 (567)
T ss_pred EEEECCEEEEec
Confidence 999999999987
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=247.54 Aligned_cols=372 Identities=17% Similarity=0.175 Sum_probs=209.4
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
+++|++|+|++|++++. . ..++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+...
T Consensus 3 ~~~d~~i~~~~v~~~~~--~--~~~~i~i~~g~I~~i~~~~~~------~~~~~iD~~G~~v~PG~ID~HvH~~~~---- 68 (444)
T PRK09060 3 QTFDLILKGGTVVNPDG--E--GRADIGIRDGRIAAIGDLSGA------SAGEVIDCRGLHVLPGVIDSQVHFREP---- 68 (444)
T ss_pred CcCcEEEECCEEECCCC--C--eeeEEEEECCEEEEecCCCCC------CCceEEECCCCEEccCEEeccccccCC----
Confidence 34789999999997442 2 347999999999999864321 246899999999999999999997320
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHHHHhCCeEEeecccc
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTM 171 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~ 171 (466)
.....+ ......+.++.+||||+++++... ...+.........+........
T Consensus 69 --------------------~~~~~e---~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~ 125 (444)
T PRK09060 69 --------------------GLEHKE---DLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFY 125 (444)
T ss_pred --------------------CCCccc---hHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEE
Confidence 011111 122234568999999999986321 2233333332221111111111
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEee--cccccCCHHHHHHHHHHHHHcCCccceeccCCcch
Q 012333 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI--RQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (466)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~ 249 (466)
..+ .. ... .+..+.. .+. +...++.++.. ......+...+.+++ +..+..+.+|+.+....
T Consensus 126 ~~~--~~------~~~---~~l~el~-~~~--gv~g~k~fm~~~~~~~~~~d~~~l~~~~---~~~~~~v~~H~E~~~l~ 188 (444)
T PRK09060 126 VGG--TR------DNA---DELAELE-RLP--GCAGIKVFMGSSTGDLLVEDDEGLRRIL---RNGRRRAAFHSEDEYRL 188 (444)
T ss_pred ecc--CC------CCH---HHHHHHH-hhc--CceEEEEEeccCCCCcccCCHHHHHHHH---HhCCCeEEEECCCHHHH
Confidence 000 00 011 1111211 111 22234443322 112223445555554 44588899999764321
Q ss_pred hHHHHh--hcC------CC-Cc------hHHHHhhhccCCCCeeEEEeecCChhhHHHHHhc--CCeEEECccchhhc--
Q 012333 250 NQVVMD--TRK------VD-HG------TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA--GVKVSHCPASAMRM-- 310 (466)
Q Consensus 250 ~~~~~~--~~~------~~-~~------~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~--g~~~~~~p~~~~~~-- 310 (466)
... .. ..+ .. .. ....+...+..+.+..+.|... .+.++.+++. .+...+||+.....
T Consensus 189 ~~~-~~~~~~g~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lhi~h~st--~~~v~~i~~~~~~vt~ev~ph~l~l~~~ 265 (444)
T PRK09060 189 RER-KGLRVEGDPSSHPVWRDEEAALLATRRLVRLARETGRRIHVLHVST--AEEIDFLADHKDVATVEVTPHHLTLAAP 265 (444)
T ss_pred HHH-HHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHhCCCeEEEeChHHhccCch
Confidence 110 10 000 00 00 0112333334455555666553 4555555443 35566777432100
Q ss_pred -------------------cCCccHHHHHHcCCcEEEccCCCCCCCC------------CCHHHHHHHHHHHhccccccc
Q 012333 311 -------------------LGFAPIKEMLHADICVSLGTDGAPSNNR------------MSIVDEMYLASLINKGREVFA 359 (466)
Q Consensus 311 -------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 359 (466)
.....+++.++.|+..+++|||.|.... +.-.+.+ ...+...
T Consensus 266 ~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~-~~l~~~~------ 338 (444)
T PRK09060 266 ECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKAKPYPASPSGMTGVQTL-VPIMLDH------ 338 (444)
T ss_pred hhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHhcCCcccCCCCcccHHHH-HHHHHHH------
Confidence 1123456778889999999999886311 1111111 1111110
Q ss_pred CCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCC-CCCC-------CcCCcccceecccCCCCe
Q 012333 360 NGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMV-------PVHDRITSLVYCMRTENV 431 (466)
Q Consensus 360 ~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~-~~~~-------~~~~~~~~~~~~~~~~~v 431 (466)
.....+|++++++++|.|||+++|+ +++|+|++|++|||||+|.+. |... ...+|+....+ ..++
T Consensus 339 ---v~~g~l~~~~~~~~~s~~pa~~~gl-~~~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~sp~~g~~l---~g~~ 411 (444)
T PRK09060 339 ---VNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTIVDLKRRETITNEWIASRCGWTPYDGKEV---TGWP 411 (444)
T ss_pred ---HHcCCCCHHHHHHHHhHhHHHHhCC-CCCCcccCCCcCCEEEEcCCCCEEEChHHhcccCCCCCCCCCEE---eeeE
Confidence 0112399999999999999999999 457999999999999999873 2211 11233332222 2478
Q ss_pred eEEEEccEEEEECCeeeeccHHHHHHHH
Q 012333 432 VSVMCNGQWVMKNKKILLLMRGRLFQLQ 459 (466)
Q Consensus 432 ~~v~v~G~~v~~~g~~~~~~~~~~~~~~ 459 (466)
..||++|++||++|+++....|+.+++-
T Consensus 412 ~~tiv~G~~v~~~g~~~~~~~G~~~~~~ 439 (444)
T PRK09060 412 VGTIVRGQRVMWDGELVGPPTGEPVRFL 439 (444)
T ss_pred EEEEECCEEEEECCEEccCCCccCcccc
Confidence 9999999999999999876677776543
|
|
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=246.29 Aligned_cols=337 Identities=17% Similarity=0.155 Sum_probs=193.0
Q ss_pred CCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHH
Q 012333 47 QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS 126 (466)
Q Consensus 47 ~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
||||++|++.... + .+.++||++|++|+|||||+|+|++...........+..++. .++...+...+.+..
T Consensus 1 ~gkI~~i~~~~~~----~-~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~----~~~~p~~~~~d~~~~ 71 (359)
T cd01309 1 DGKIVAVGAEITT----P-ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEET----DPVTPHVRAIDGINP 71 (359)
T ss_pred CCEEEEEcCCCCC----C-CCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccC----CCCCceeEeecccCC
Confidence 7999999986542 2 367899999999999999999999876555433333322111 111222333333444
Q ss_pred HHHHHHHHHhcCceeeeecCc-cCHHH------------HHHHH--HHhCCeEEeecccccCCCCCCcccccCChHHHHH
Q 012333 127 TLLCGIELIHSGVTCFAEAGG-QHVSE------------MAKAV--ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191 (466)
Q Consensus 127 ~~~~~~~~~~~GvTtv~~~~~-~~~~~------------~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (466)
....+..++++|||++...++ .++.. ..+.. ....++..++....... +-......... ....
T Consensus 72 ~~~~~~~a~~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~-~~~~~~p~trm-g~~~ 149 (359)
T cd01309 72 DDEAFKRARAGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVY-GGKGKEPATRM-GVAA 149 (359)
T ss_pred CCHhHHHHHhcCceEEEecCCCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccc-cccCCCccchH-HHHH
Confidence 444556788999999865442 11100 00000 01112211111000000 00000000011 1111
Q ss_pred HHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhc
Q 012333 192 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE 271 (466)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (466)
..++.+.+.+......... -.........+..++.++..++. .+++.+|+..... ....+...+
T Consensus 150 ~lr~~~~~a~~y~~~~~~~-~~~~~~~~~~d~~l~~l~~~~~~-~~~v~vHa~~~~~--------------i~~~l~~~~ 213 (359)
T cd01309 150 LLRDAFIKAQEYGRKYDLG-KNAKKDPPERDLKLEALLPVLKG-EIPVRIHAHRADD--------------ILTAIRIAK 213 (359)
T ss_pred HHHHHHHHHHHHHHHhhhh-hhcccCCCCCCccHHHHHHHHcC-CeeEEEEeCCHHH--------------HHHHHHHHH
Confidence 2222221111100000000 00000000122245555555553 3889999975322 122222222
Q ss_pred cCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc------cCCccHHHHHHcC-CcEEEccCCCCCCCCCCHHHH
Q 012333 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM------LGFAPIKEMLHAD-ICVSLGTDGAPSNNRMSIVDE 344 (466)
Q Consensus 272 ~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~------~~~~~~~~~~~~g-i~~~~gsD~~~~~~~~~~~~~ 344 (466)
..+-+.++.|+... .+.++++++.++.++++|...... ....++..+.++| ++++++||++... ...++..
T Consensus 214 e~g~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgsD~~~~~-~~~l~~~ 291 (359)
T cd01309 214 EFGIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSDHPVLN-IRNLNLE 291 (359)
T ss_pred HcCCCEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHcCCceEEEECCCCCcc-chhHHHH
Confidence 23445789999886 788999999999999999865432 3556888999998 9999999996431 1122222
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceec
Q 012333 345 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 424 (466)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 424 (466)
...+ . ..+++.+++++++|.|||+++|+++++|+|++|+.|||||||.+++ +.
T Consensus 292 ~~~a--~-------------~~gl~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl-----~~------- 344 (359)
T cd01309 292 AAKA--V-------------KYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNGDPL-----EP------- 344 (359)
T ss_pred HHHH--H-------------HcCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCCccCEEEECCCcc-----cc-------
Confidence 2111 1 1259999999999999999999988899999999999999999943 32
Q ss_pred ccCCCCeeEEEEccEEEE
Q 012333 425 CMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 425 ~~~~~~v~~v~v~G~~v~ 442 (466)
..++..||++|++||
T Consensus 345 ---~~~v~~v~i~G~~v~ 359 (359)
T cd01309 345 ---TSKPEQVYIDGRLVY 359 (359)
T ss_pred ---cCcccEEEECCEEeC
Confidence 258999999999986
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=225.12 Aligned_cols=349 Identities=20% Similarity=0.235 Sum_probs=210.8
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
.+|.|++|+++ ..++.++.|.|+||+|.+|.+. +. | ...++||.+|.+|+|||||+|+|.+...
T Consensus 2 ~~~~~~~i~t~---~~~~~~~~v~i~dg~I~~i~~~-~~----p-~~~e~id~~G~~l~PGfID~hihG~gG~------- 65 (380)
T COG1820 2 YALKNGRIFTG---HGVLDGGAVVIEDGKIEAVVPA-EL----P-ADAEIIDLKGALLVPGFIDLHIHGGGGA------- 65 (380)
T ss_pred ceeeccEEEcC---cceEECcEEEEcCCEEEEEecC-cC----C-CcceeecCCCCEecccEEEEeecCcCcc-------
Confidence 47899999975 4567888999999999999982 22 2 3779999999999999999999985311
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-ccCHHHHHHHHHH---h-CCeEEeecccccCCC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQHVSEMAKAVEL---L-GLRACLVQSTMDCGE 175 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~---~-g~~~~~~~~~~~~~~ 175 (466)
+ .+. .........-.+..++.|||++...- ....+.+.+++.. . .....-......+|+
T Consensus 66 -~--------------~~D-~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP 129 (380)
T COG1820 66 -D--------------FMD-AGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGP 129 (380)
T ss_pred -c--------------ccC-ccCHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecC
Confidence 0 011 01111222334668899999986522 2233333222221 1 111112234455777
Q ss_pred CCCcccccCChHHHHH-HHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 176 GLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
.+++.......+..+. ...+.++.+.+..++.++...-.+.. .- ..+++..+.+.|+.+++-.....++.....
T Consensus 130 ~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlAPE~-~~----~~e~i~~l~~~giivs~GHS~Atye~~~~a 204 (380)
T COG1820 130 FLSPEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLAPEL-DG----TKELIRLLANAGIVVSIGHSNATYEQARAA 204 (380)
T ss_pred ccCHhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEECCCC-CC----CHHHHHHHHhCCeEEEecCccccHHHHHHH
Confidence 7777776666655553 33444555555555444442222221 11 234455566667776663333333222111
Q ss_pred hhcCCCCchHHHHhhhccCCCC----------------eeEEEeecCChhhHHHHHhcC-CeEEECccchhhccCCccHH
Q 012333 255 DTRKVDHGTVTFLDKIEFLQNN----------------LLSAHTVWVNHTEIGLLSRAG-VKVSHCPASAMRMLGFAPIK 317 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~H~~~~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~~~~~ 317 (466)
...+.. ...+.++.+..+..| .+|..+.|++|..++.+.+.. ..-.++-+..|+..+.+.-.
T Consensus 205 ~~~Ga~-~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVhP~~~~ia~~~kg~~~i~LVTDam~a~G~~dg~ 283 (380)
T COG1820 205 FEAGAT-FVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVHPAAIRLALKAKGGDKIVLVTDAMAAAGLPDGE 283 (380)
T ss_pred HHhCcc-EEEeeccCCCCCCCCCCcccceeecCCCeEEEEEccCcccCHHHHHHHHhccCCceEEEEEccccccCCCCcc
Confidence 111111 112233333322211 278899999999999887775 33233334455443332211
Q ss_pred HH-------HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCc
Q 012333 318 EM-------LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDND 390 (466)
Q Consensus 318 ~~-------~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~ 390 (466)
.. .+.| .+.-.|....++.+.|.+.++...-. .+++++||++|+|.+||+.+|++++
T Consensus 284 y~lgg~~V~v~~g--~~~~~~GtLAGS~Ltm~~avrn~v~~--------------~~~~~~eAv~maS~~PA~~lgl~~~ 347 (380)
T COG1820 284 YILGGQTVTVADG--ARRLEDGTLAGSTLTMDEAVRNLVEW--------------GGISLAEAVRMASLNPAKALGLDDR 347 (380)
T ss_pred EEECCEEEEEECC--EEECCCCceeeeeeeHHHHHHHHHHH--------------hCCCHHHHHHHhhhhHHHHhCCcCc
Confidence 11 1222 22234554455567788887765322 1489999999999999999999999
Q ss_pred ccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 391 IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 391 ~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
+|+|++|++||||+||.+ .++..||++|++++.
T Consensus 348 ~G~i~~G~~Adlvvld~d--------------------~~v~~T~i~G~~~~~ 380 (380)
T COG1820 348 LGSIKPGKDADLVVLDDD--------------------LNVKATWINGEKVFN 380 (380)
T ss_pred ccccCCCcccCEEEECCC--------------------CcEEEEEECCEEeeC
Confidence 999999999999999998 699999999998873
|
|
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=235.69 Aligned_cols=362 Identities=14% Similarity=0.133 Sum_probs=202.6
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
++.|++|+|++|+++++ ....+++|+|++|+|++|++..... ..+ .+.++||++|++|+|||||+|+|+...
T Consensus 1 ~~~~~~i~n~~v~~~~~--~~~~~~~v~I~~G~I~~i~~~~~~~-~~~-~~~~viDa~G~~v~PG~ID~HvH~~~~---- 72 (429)
T PRK09059 1 MMRPILLANARIIDPSR--GLDEIGTVLIEDGVIVAAGKGAGNQ-GAP-EGAEIVDCAGKAVAPGLVDARVFVGEP---- 72 (429)
T ss_pred CCcCEEEEeeEEECCCC--CcccceEEEEECCEEEEecCccccc-cCC-CCCeEEECCCCEEeccEEecccccCCC----
Confidence 35789999999996543 3335679999999999998643110 011 256899999999999999999998320
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHHHHh----CCeEEee
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELL----GLRACLV 167 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~~~~----g~~~~~~ 167 (466)
.. ..........+.++.+|||++.+++... ...+....... .+.....
T Consensus 73 --------------------~~---~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~ 129 (429)
T PRK09059 73 --------------------GA---EHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPA 129 (429)
T ss_pred --------------------Cc---hhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEE
Confidence 00 1111222344668999999999987431 12222222111 2222221
Q ss_pred cccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCc
Q 012333 168 QSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
..... + . ....+.+... +.+. .+..+.. ......+...+.++++.+++.+.++.+|+.+..
T Consensus 130 ~~~~~-~--~--------~~~~l~e~~~----l~~~---Gv~~f~~-~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~ 190 (429)
T PRK09059 130 AAITK-G--L--------AGEEMTEFGL----LRAA---GAVAFTD-GRRSVANTQVMRRALTYARDFDAVIVHETRDPD 190 (429)
T ss_pred eEEec-C--C--------CCcchHHHHH----HHhc---CcEEEec-CCcccCCHHHHHHHHHHHHhcCCEEEEecCChh
Confidence 11110 0 0 0111121112 2221 2332221 112233556688999999999999999997643
Q ss_pred chh------HHHHhhcC-CCCch-------HHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECccchhhc
Q 012333 248 YEN------QVVMDTRK-VDHGT-------VTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCPASAMRM 310 (466)
Q Consensus 248 ~~~------~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p~~~~~~ 310 (466)
... .......+ ..... ...+......+.+..+.|...- +-+.++.+++.|+. ..+||+.-...
T Consensus 191 l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~ 270 (429)
T PRK09059 191 LGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLN 270 (429)
T ss_pred hhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhcc
Confidence 211 00000110 00001 1122222233444444444331 12445556666755 45787743210
Q ss_pred -----------cCCc---------cHHHHHHcCCcEEEccCCCCCCCCC---C---------HHHHHHHHHHHhcccccc
Q 012333 311 -----------LGFA---------PIKEMLHADICVSLGTDGAPSNNRM---S---------IVDEMYLASLINKGREVF 358 (466)
Q Consensus 311 -----------~~~~---------~~~~~~~~gi~~~~gsD~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~ 358 (466)
.-.+ .+++.+..|...+++|||.|+.... + -++.+.... ...
T Consensus 271 ~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~~~~~~~~~G~~gle~~l~~~-~~~----- 344 (429)
T PRK09059 271 ENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLAAA-LRL----- 344 (429)
T ss_pred HHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCcCChhhCCCCcccHHHHHHHH-HHH-----
Confidence 1112 3445678898999999999874211 1 111111111 110
Q ss_pred cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecccCCCC
Q 012333 359 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYCMRTEN 430 (466)
Q Consensus 359 ~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~~~~~~ 430 (466)
.....++++++++++|.|||+++|| + +|+|++|++||||++|.+ .|+..+ -.+|+....+ .++
T Consensus 345 ----v~~~~l~l~~~~~~~s~nPA~~~gl-~-~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~sPf~G~~l---~G~ 415 (429)
T PRK09059 345 ----YHNGEVPLLRLIEALSTRPAEIFGL-P-AGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPFEEARF---QGR 415 (429)
T ss_pred ----HHcCCCCHHHHHHHHhHHHHHHhCC-C-cCcccCCCcCCEEEECCCCCEEECcccCccCCCCCCCCCCEE---eeE
Confidence 0122489999999999999999999 4 599999999999999997 333221 1223322211 368
Q ss_pred eeEEEEccEEEEE
Q 012333 431 VVSVMCNGQWVMK 443 (466)
Q Consensus 431 v~~v~v~G~~v~~ 443 (466)
|..||++|++||+
T Consensus 416 v~~ti~~G~~v~~ 428 (429)
T PRK09059 416 VVRTIVAGKTVYE 428 (429)
T ss_pred EEEEEECCEEEee
Confidence 9999999999986
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=241.68 Aligned_cols=176 Identities=23% Similarity=0.203 Sum_probs=132.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcC
Q 012333 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 297 (466)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g 297 (466)
...+++.+.++++.++++|+++++|+.+...... .... ........+..+.+..+.|+..+++++++++++.|
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~-~l~~------~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~g 362 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDT-VLDA------LEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLG 362 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHH-HHHH------HHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcC
Confidence 3467899999999999999999999975332211 1110 11112222334567899999999999999999999
Q ss_pred CeEEECccchhh--------------ccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCC
Q 012333 298 VKVSHCPASAMR--------------MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 363 (466)
Q Consensus 298 ~~~~~~p~~~~~--------------~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (466)
+.+++||.+... ....+|++.+++.|+++++|||+++.. .+++..++.+......... .. ..
T Consensus 363 v~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~Gv~v~lGSD~~~~~--~~p~~~~~~av~~~~~~~~-~~-~~ 438 (479)
T cd01300 363 VIASVQPNHLYSDGDAAEDRRLGEERAKRSYPFRSLLDAGVPVALGSDAPVAP--PDPLLGIWAAVTRKTPGGG-VL-GN 438 (479)
T ss_pred CceEeCcccccCchHHHHHhcccHHHHhcCchHHHHHHCCCeeeccCCCCCCC--CCHHHHHHHHheeeCCCCC-CC-CC
Confidence 999999986521 135689999999999999999997542 5788887766543221110 00 01
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEE
Q 012333 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 404 (466)
Q Consensus 364 ~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv 404 (466)
..+++|++++++++|.+||+++|+++++|+|++||.|||||
T Consensus 439 ~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 439 PEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred ccccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 34679999999999999999999998899999999999986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=239.83 Aligned_cols=327 Identities=17% Similarity=0.197 Sum_probs=192.9
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
|++|+|++|+++.+ ..+..++|.|++|+|++|++. .+.++||++|++|+|||||+|+|+..
T Consensus 1 dlli~n~~ivd~~~--~~~~~~dI~I~~g~I~~ig~~---------~~~~viDa~G~~v~PG~ID~H~Hi~~-------- 61 (552)
T TIGR01178 1 DIVIKNAKIIDVYN--GEIIPGDIAIANGHIAGVGKY---------NGVKVIDALGEYAVPGFIDAHIHIES-------- 61 (552)
T ss_pred CEEEEeeEEEeCCC--CcEEeeeEEEECCEEEEecCC---------CCCeEEECCCCEEEeCeEecccccCC--------
Confidence 58999999996433 234557999999999999863 14589999999999999999999832
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHH---HHHHHHHHhCCeEEeecccc
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVS---EMAKAVELLGLRACLVQSTM 171 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~---~~~~~~~~~g~~~~~~~~~~ 171 (466)
.+.....+. ..++.+||||+++++.. ... .+.+......++.+......
T Consensus 62 -----------------~~~~~~~~~------~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~ 118 (552)
T TIGR01178 62 -----------------SMLTPSEFA------KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSC 118 (552)
T ss_pred -----------------CCCChhHHH------HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 111122222 34789999999986532 222 22333333444443322211
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhH
Q 012333 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (466)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 251 (466)
.++.+..+.... -..++..+.+++ .+--.++.++..+.....+++.++.+ +.+++.+..+..|+.......
T Consensus 119 --vp~~~~e~~g~~--~~~~~i~~~~~~---~~V~glke~m~~~~v~~~d~~~l~~i-~~a~~~g~~I~gHap~l~~~e- 189 (552)
T TIGR01178 119 --VPALQFETSGAV--LTAEDIDELMEL---DEVLGLAEVMDYPGVINADIEMLNKI-NSARKRNKVIDGHCPGLSGKL- 189 (552)
T ss_pred --CCCCcccCCCCc--cCHHHHHHHHcC---CCccEEEEEecchhhcCCCHHHHHHH-HHHHhCCCEEEecCCCCCHHH-
Confidence 111110110000 012222333321 12223444444333333445555554 788999999999986432111
Q ss_pred HHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhccCCccHHHHH--HcCCcEEEc
Q 012333 252 VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEML--HADICVSLG 329 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~--~~gi~~~~g 329 (466)
...+.. ......|... +.++...-.++|+.+.+.-.+..+ ....+..++ ..+.+++++
T Consensus 190 ------------L~~~~~-----aGi~~dHe~~-s~~ea~e~~~~Gm~~~ir~gs~~~--n~~~~~~~~~~~~~~~~~l~ 249 (552)
T TIGR01178 190 ------------LNKYIS-----AGISNDHEST-SIEEAREKLRLGMKLMIREGSAAK--NLEALHPLINEKNCRSLMLC 249 (552)
T ss_pred ------------HHHHHH-----cCCCCCcCcC-CHHHHHHHHHCCCEEEEeCCcccc--CHHHHHHHHhhcCCceEEEE
Confidence 111111 1123556554 556666666788887765333321 112222222 356889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCC
Q 012333 330 TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS 409 (466)
Q Consensus 330 sD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~ 409 (466)
||... ..+++...+....+.+.. ..++++++|++++|.|||+++|++ ++|+|++|+.|||++++..
T Consensus 250 TD~~~---~~~~~~~g~l~~~v~~ai---------~~g~~~~~Al~maT~npA~~lgl~-~~G~I~pG~~ADlvvl~~l- 315 (552)
T TIGR01178 250 TDDRH---VNDILNEGHINHIVRRAI---------EHGVDPFDALQMASINPAEHFGID-VGGLIAPGDPADFVILKDL- 315 (552)
T ss_pred eCCCC---hhHHHhcCCHHHHHHHHH---------HcCCCHHHHHHHHHHHHHHHcCCC-CCcccCCCCcCCEEEECCC-
Confidence 99421 112333222222222111 124999999999999999999996 4799999999999999952
Q ss_pred CCCCCcCCcccceecccCCCCeeEEEEccEEEEEC-----Ceee
Q 012333 410 WPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN-----KKIL 448 (466)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-----g~~~ 448 (466)
...++..||++|++|.++ |+..
T Consensus 316 -----------------~~~~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 316 -----------------RNFKVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred -----------------CCceEEEEEECCEEEcccccccCCccc
Confidence 125899999999999997 7643
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=228.88 Aligned_cols=332 Identities=20% Similarity=0.290 Sum_probs=208.4
Q ss_pred CcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEE-cCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccc
Q 012333 15 LGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAI-GQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (466)
Q Consensus 15 ~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~I-g~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~ 93 (466)
..+.+|++++||++++.- ...+..++|+|.+|+|+.| ++.. .+++++||+.|++|.|||||.|.|+
T Consensus 20 G~~~adlv~~ng~ivdv~--~gei~~~dIaI~~grI~~v~~~~~-------~e~~~~iDa~g~yivPGfID~H~HI---- 86 (584)
T COG1001 20 GRAKADLVLKNGRIVDVV--TGEIYKGDIAIAGGRIVGVIGEYR-------AEATEVIDAAGRYIVPGFIDAHLHI---- 86 (584)
T ss_pred CCCCCCEEEECCEEEEee--eccEEeeeEEEECCEEEEeecCcC-------cccceeecCCCCEeccceeecceec----
Confidence 355789999999999754 3345667999999999995 4432 1478999999999999999999999
Q ss_pred cccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeec--------CccCHHHHHHHHHHhCCeEE
Q 012333 94 AKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA--------GGQHVSEMAKAVELLGLRAC 165 (466)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~--------~~~~~~~~~~~~~~~g~~~~ 165 (466)
++.+..+..|.+. .+.+||||++.- |.....-+.+..+...++.+
T Consensus 87 ---------------------ESSm~tP~~FA~~------Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~ 139 (584)
T COG1001 87 ---------------------ESSMLTPSEFARA------VLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVY 139 (584)
T ss_pred ---------------------cccccCHHHHHHH------hhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEE
Confidence 7777777777666 689999998763 33344556667777777777
Q ss_pred eecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccC
Q 012333 166 LVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 245 (466)
...+..-....+... ...-..+..++++.+-.-. .+.-.+..++.-..+++.+ ..++.+++.+.++.-|+-.
T Consensus 140 ~~~pScVPat~~Et~----Ga~l~a~~i~e~~~~p~Vi---gl~E~Mn~pgVi~~D~~~l-~kl~a~~~~~k~VdGHapg 211 (584)
T COG1001 140 VMLPSCVPATPFETS----GAELTAEDIKELLEHPEVI---GLGEMMNFPGVIEGDPDML-AKLEAARKAGKPVDGHAPG 211 (584)
T ss_pred EecccCccCCccccC----CceecHHHHHHHhhCCCcc---chhhhcCCchhccCCHHHH-HHHHHHHHcCCeecccCCC
Confidence 655443222111110 1111112222322221110 1111134444444455544 4566789999999999865
Q ss_pred CcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhccCCccH-HHHHHcC-
Q 012333 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPI-KEMLHAD- 323 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~-~~~~~~g- 323 (466)
.... ....+...+.. ..|- ..+.|+...-.++|+.+.+.--+..+. ...+ ..+-+.+
T Consensus 212 l~g~-------------~Ln~Y~aaGi~-----tDHE-~~t~EEa~~klr~Gm~i~iReGS~a~d--l~~l~~~i~e~~~ 270 (584)
T COG1001 212 LSGK-------------ELNAYIAAGIS-----TDHE-STTAEEALEKLRLGMKIMIREGSAAKD--LAALLPAITELGS 270 (584)
T ss_pred CChH-------------HHHHHHhcCCC-----cCcc-cCCHHHHHHHHhCCcEEEEEcCchhhh--HHHHHHHHhhcCC
Confidence 3211 12222222221 2233 346667666667898887653333221 1112 2223334
Q ss_pred CcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEE
Q 012333 324 ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 403 (466)
Q Consensus 324 i~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlv 403 (466)
=.++++||-.... ++..+-.+-.++.+ .-++|+++.+|++|+|.|||+.+||++ +|.|+||+.||||
T Consensus 271 ~~~~lcTDD~~p~---dl~~eGhld~~vR~---------Ai~~Gv~p~~a~qmAtiN~A~~~gl~~-~G~iAPG~~ADlv 337 (584)
T COG1001 271 RRVMLCTDDRHPD---DLLEEGHLDRLVRR---------AIEEGVDPLDAYQMATINPAEHYGLDD-LGLIAPGRRADLV 337 (584)
T ss_pred ceEEEECCCCChh---HhhhcCCHHHHHHH---------HHHcCCCHHHHHHHHhcCHHHHcCCcc-cccccCCccccEE
Confidence 3588999865321 12211111111111 112469999999999999999999965 9999999999999
Q ss_pred EEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 404 VVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 404 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
+++.- +..++..|+++|++|.++|+
T Consensus 338 i~~DL------------------~~~~v~~V~~~G~~v~~~g~ 362 (584)
T COG1001 338 ILEDL------------------RNFKVTSVLIKGRVVAEDGK 362 (584)
T ss_pred EEccc------------------ccCceeEEEECCEEEecCCc
Confidence 99874 23689999999999999997
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=233.96 Aligned_cols=329 Identities=13% Similarity=0.132 Sum_probs=187.3
Q ss_pred EEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhH
Q 012333 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED 122 (466)
Q Consensus 43 v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (466)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|+.. .....
T Consensus 1 i~I~dG~I~~i~~~~--------~~~~viDa~g~~vlPG~ID~HvH~~~------------------------~~~~~-- 46 (386)
T PRK08417 1 IRIKDGKITEIGSDL--------KGEEILDAKGKTLLPALVDLNVSLKN------------------------DSLSS-- 46 (386)
T ss_pred CEEECCEEEEecCCC--------CCCeEEECCCCEEccCeeEEeeeeCC------------------------CCcCh--
Confidence 579999999998642 25689999999999999999999821 01111
Q ss_pred HHHHHHHHHHHHHhcCceeeeecCccCH-----HHHHHHHHHhCC--eEEeecccccCCCCCCcccccCChHHHHHHHHH
Q 012333 123 SYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELLGL--RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKE 195 (466)
Q Consensus 123 ~~~~~~~~~~~~~~~GvTtv~~~~~~~~-----~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
.......+.++.+||||+++|+.... ..+....+..+. ......... . .......
T Consensus 47 --e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~---- 108 (386)
T PRK08417 47 --KNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRA------L------DEDGKLS---- 108 (386)
T ss_pred --hhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEE------E------CCCccHH----
Confidence 12234557799999999999974211 122222221111 111110000 0 0111112
Q ss_pred HHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh------hcC-CCCc------
Q 012333 196 LYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD------TRK-VDHG------ 262 (466)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~------~~~-~~~~------ 262 (466)
.+..+.+.|...++. . ...+++.+.++++.+++.+.++.+|+.+.......... ..+ .+..
T Consensus 109 ~i~~l~~~Gv~~~k~----~--~~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~ 182 (386)
T PRK08417 109 NIATLLKKGAKALEL----S--SDLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETK 182 (386)
T ss_pred HHHHHHHCCCEEEEC----C--CCCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHH
Confidence 223333322222221 1 14677889999999999999999999774332211000 000 0000
Q ss_pred -hHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCC--eEEECccchhhc-----------cC---------CccHHH
Q 012333 263 -TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGV--KVSHCPASAMRM-----------LG---------FAPIKE 318 (466)
Q Consensus 263 -~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~--~~~~~p~~~~~~-----------~~---------~~~~~~ 318 (466)
....+...+..+.+..+.|...- +-+.++.+++.|+ ...+||++-..- .- ...+++
T Consensus 183 ~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~ 262 (386)
T PRK08417 183 EVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLE 262 (386)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHH
Confidence 11123333334445555554431 1233444555664 456888744210 01 124456
Q ss_pred HHHcCCcEEEccCCCCCCCCC---CHH---------HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 319 MLHADICVSLGTDGAPSNNRM---SIV---------DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
.+..|...+++|||.|+.... +++ +.+. ..+.... .....++++++++++|.+||++||
T Consensus 263 ~l~~g~Id~i~SDHaP~~~~~K~~~~~~a~~G~~g~e~~~-~~~~~~~--------v~~~~~~~~~~~~~~t~~pA~~lg 333 (386)
T PRK08417 263 ALKEGKIDFLTSLHSAKSNSKKDLAFDEAAFGIDSICEYF-SLCYTYL--------VKEGIITWSELSRFTSYNPAQFLG 333 (386)
T ss_pred HHhcCCceEEEcCCCCCCHHHccCCHhHCCCCchHHHHHH-HHHHHHH--------HhcCCCCHHHHHHHHHHHHHHHhC
Confidence 778899999999999874211 111 1111 1111100 112248999999999999999999
Q ss_pred CCCcccccccCCccCEEEEcCCCCCCCC-cCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 387 WDNDIGSLEAGKKADMVVVDPFSWPMVP-VHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 387 l~~~~G~i~~G~~ADlvv~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
+. + |+|++|++|||+++|.+.....+ ..+|+....+ ..+|..||++|++||+
T Consensus 334 l~-~-G~l~~G~~ADlvi~d~~~~~~~~~~~~p~~g~~~---~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 334 LN-S-GEIEVGKEADLVLFDPNESTIIDDNFSLYSGDEL---YGKIEAVIIKGKLYLE 386 (386)
T ss_pred CC-C-CccCCCCcCCEEEEcCCCCeEeCCCCCCccCCEE---eccEEEEEECCEEEeC
Confidence 94 4 99999999999999998322211 2344433322 2479999999999974
|
|
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=226.52 Aligned_cols=348 Identities=18% Similarity=0.208 Sum_probs=204.7
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|++|++.+ ....+++|.|+||+|++|++..+. + +..++||++|++|+|||||+|+|.....
T Consensus 3 ~~~~i~n~~i~~~~---~~~~~~~i~V~dGkI~~I~~~~~~----~-~~~~viD~~G~~i~PGfID~HvHg~~g~----- 69 (380)
T TIGR00221 3 ESYLLKDIAIVTGN---EVIDNGAVGINDGKISTVSTEAEL----E-PEIKEIDLPGNVLTPGFIDIHIHGCGGV----- 69 (380)
T ss_pred ceEEEEeeEEECCC---CEEeccEEEEECCEEEEEcccccC----C-CCCeEEECCCCEEccceeeeeeccccCc-----
Confidence 57999999999642 355678999999999999875322 1 2457999999999999999999983210
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-HHHHHH---HHHH-h-CCeEEeeccccc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMAK---AVEL-L-GLRACLVQSTMD 172 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-~~~~~~---~~~~-~-g~~~~~~~~~~~ 172 (466)
....... .........+++.|||++.++.... ...+.+ .... . .........+..
T Consensus 70 ----------------~~~~~~~---e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~Hl 130 (380)
T TIGR00221 70 ----------------DTNDASF---ETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHL 130 (380)
T ss_pred ----------------CCCCCCH---HHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEee
Confidence 0000111 2223345678999999998864322 222222 2211 1 111223344555
Q ss_pred CCCCCCcccccCChHHHHH-HHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhH
Q 012333 173 CGEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 251 (466)
+++.+++........+.+. ...+.++++.+...+.++...-.+..+. -.++++.+.+.|+.+++-.....++..
T Consensus 131 EGPfi~~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlAPE~~~-----~~~~i~~l~~~gi~vs~GHs~A~~~~~ 205 (380)
T TIGR00221 131 EGPFLSPEKKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLAPEEDQ-----HFELIRHLKDAGIIVSAGHTNATYELA 205 (380)
T ss_pred ecCcCChhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEECCCCCC-----hHHHHHHHHHCCeEEEeeCCCCCHHHH
Confidence 6777777766666665544 3335555665544566666443333221 235566777777777653333222222
Q ss_pred HHHhhcCCCCchHHHHhhhccCC-------------CC---eeEEEeecCChhhHHHHHhcC-CeEEECccchhhccCCc
Q 012333 252 VVMDTRKVDHGTVTFLDKIEFLQ-------------NN---LLSAHTVWVNHTEIGLLSRAG-VKVSHCPASAMRMLGFA 314 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~H~~~~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~~ 314 (466)
......|.. ...+.++.+..+. ++ .+|..|.|++++.++.+.+.. ..-.+.-+..++..+.+
T Consensus 206 ~~a~~~Ga~-~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~kg~~~~~lvtDa~~~~g~~ 284 (380)
T TIGR00221 206 KAAFKAGAT-HATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLKGDSKLCLVTDSMAAAGAK 284 (380)
T ss_pred HHHHHcCCC-eeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhcCCCcEEEEeccccccCCC
Confidence 111111110 0111222222111 11 377889999999999987764 21112223333333333
Q ss_pred cHHHHHHcCCcEEE------ccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 315 PIKEMLHADICVSL------GTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 315 ~~~~~~~~gi~~~~------gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
+-...+ .|..+.+ -.|..-.++.+.+...++...- . .+++++++++++|.|||+++|++
T Consensus 285 ~G~y~l-~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~--~------------~~~~~~eal~~aT~npA~~lgl~ 349 (380)
T TIGR00221 285 DGVFIF-GGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVE--F------------TNISLTDAARMSSLNPARALGID 349 (380)
T ss_pred CceEeE-CCEEEEEECCEEEcCCCceechhhhHHHHHHHHHH--h------------hCCCHHHHHHHHhHHHHHHhCCC
Confidence 221111 1222211 1333333344667777665422 1 14999999999999999999997
Q ss_pred CcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccE
Q 012333 389 NDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 439 (466)
Q Consensus 389 ~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~ 439 (466)
+++|+|++|++|||+|+|.+ .++..||++|+
T Consensus 350 ~~~G~i~~G~~ADlvv~d~~--------------------~~v~~t~~~G~ 380 (380)
T TIGR00221 350 DRLGSVTVGKDANLVVFTPD--------------------FEVILTIVNGN 380 (380)
T ss_pred CCCcccCCCCcCCEEEECCC--------------------CCEEEEEeCCC
Confidence 66799999999999999998 58999999995
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=225.45 Aligned_cols=340 Identities=21% Similarity=0.268 Sum_probs=195.7
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|+.|++++. ..+++|+|+||+|++|++....+ ...+.++||++|++|+|||||+|+|+..... .
T Consensus 2 ~~i~~~~v~~~~~----~~~~~v~i~~g~I~~v~~~~~~~---~~~~~~~id~~g~~v~PG~id~H~H~~~~~~-----~ 69 (387)
T cd01308 2 TLIKNAEVYAPEY----LGKKDILIAGGKILAIEDQLNLP---GYENVTVVDLHGKILVPGFIDQHVHIIGGGG-----E 69 (387)
T ss_pred EEEECcEEeCCCC----ccceEEEEECCEEEEEeCCcccc---cCCCCeEEECCCCEEccCeeehhhCcccccC-----C
Confidence 5899999997532 35779999999999999754321 1135689999999999999999999853100 0
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-----cCHH---HHHHHHHHhCCeEEeeccccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVS---EMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-----~~~~---~~~~~~~~~g~~~~~~~~~~~ 172 (466)
.. ....++. ....+++.+|+||+++++. .... ...++..+.|++.+.....++
T Consensus 70 ~~------------~~~~~~~-------~~~~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~ 130 (387)
T cd01308 70 GG------------PSTRTPE-------VTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYE 130 (387)
T ss_pred Cc------------ccccCHH-------HHHHHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccC
Confidence 00 0011111 1234678999999999862 1122 335555678999887655443
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCC------ccceeccCC
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVAEI 246 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~------~v~~H~~~~ 246 (466)
.. .. ...+.+......++.+... + .. ............+.+.++.+.++..+. .+++|....
T Consensus 131 ~~----~~----~~~~~~~~~~~~i~~~~~~--g-~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~ 198 (387)
T cd01308 131 VP----TR----TITGSIRKDLLLIDKVIGV--G-EI-AISDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDG 198 (387)
T ss_pred CC----Cc----CchhhHHHHHHHHHHhcCc--c-eE-EEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence 21 11 1112222222234443321 1 11 112222234455666777776665332 356666543
Q ss_pred cchhHHHHhhcCCCCchHHHHhhhccCCC-CeeEEEeecCChhh---HHHHHhcCCeEEEC----ccchhhc--cCCccH
Q 012333 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQN-NLLSAHTVWVNHTE---IGLLSRAGVKVSHC----PASAMRM--LGFAPI 316 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~~~~~~---~~~~~~~g~~~~~~----p~~~~~~--~~~~~~ 316 (466)
...... ..+++...+. .. +.+..|.. .+.+. .....+.|..+.+. |...... .....+
T Consensus 199 ~~~~~~----------i~~~~~~~G~-~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~~l 266 (387)
T cd01308 199 KRALSP----------IFELIEETEI-PITQFLPTHIN-RTAPLFEQGVEFAKMGGTIDLTSSIDPQFRKEGEVRPSEAL 266 (387)
T ss_pred hHHHHH----------HHHHHHhcCC-CcceeECCccc-CCHHHHHHHHHHHHcCCcEEEECCCCccccccCccChHHHH
Confidence 111110 1111222121 11 22233333 34442 23344456543332 2111000 123456
Q ss_pred HHHHHcCC---cEEEccCCCCC---CCC------------CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 012333 317 KEMLHADI---CVSLGTDGAPS---NNR------------MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378 (466)
Q Consensus 317 ~~~~~~gi---~~~~gsD~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 378 (466)
+.++++|+ .++++||+... ... ..++..+... +. ..++|++++++++|
T Consensus 267 ~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~~~~--v~------------~~~i~~~~al~~~T 332 (387)
T cd01308 267 KRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREA--VK------------CGDIPLEVALRVIT 332 (387)
T ss_pred HHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHHHHH--HH------------hCCCCHHHHHHHHH
Confidence 78889886 37999997321 000 0111222211 11 12499999999999
Q ss_pred HHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeec
Q 012333 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450 (466)
Q Consensus 379 ~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 450 (466)
.|||+++|+++ +|+|++|++|||+|||.+ .++..|+++|++|+++|++...
T Consensus 333 ~npA~~lg~~~-~G~i~~G~~ADlvv~d~~--------------------~~~~~~~~~G~~v~~~~~~~~~ 383 (387)
T cd01308 333 SNVARILKLRK-KGEIQPGFDADLVILDKD--------------------LDINSVIAKGQIMVRNGKLLVK 383 (387)
T ss_pred HHHHHHhCCCC-CCCcCCCCcCCEEEEcCC--------------------CCEEEEEECCEEEEECCeEeec
Confidence 99999999965 799999999999999997 4789999999999999998743
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=230.73 Aligned_cols=328 Identities=15% Similarity=0.142 Sum_probs=186.3
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.|++|+|++|+++.+ .....++|+|+||+|++|++.... +..+.++||++|++|+|||||+|+|+...
T Consensus 1 ~~~~~i~n~~v~d~~~--~~~~~~~v~I~dg~I~~i~~~~~~----~~~~~~~iDa~G~~vlPG~ID~H~H~~~~----- 69 (418)
T PRK07369 1 MSNELLQQVRVLDPVS--NTDRIADVLIEDGKIQAIEPHIDP----IPPDTQIIDASGLILGPGLVDLYSHSGEP----- 69 (418)
T ss_pred CCCEEEeCeEEECCCC--CcccceeEEEECCEEEEecCCccc----CCCCCEEEECCCCEEecCEEecccccCCC-----
Confidence 5689999999995332 223567999999999999864321 11357899999999999999999998321
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHHHHHHHHHHhC----CeEEeec
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLG----LRACLVQ 168 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~~~~~~~~~~g----~~~~~~~ 168 (466)
.....+.+ ....+.++.+||||+.+++.. ....+........ +......
T Consensus 70 -------------------~~~~~e~~---~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~ 127 (418)
T PRK07369 70 -------------------GFEERETL---ASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWG 127 (418)
T ss_pred -------------------CcCCCccH---HHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEE
Confidence 00111111 223466899999999998742 1222222222211 1122111
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcc
Q 012333 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (466)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~ 248 (466)
... .+ .....+.+. ..+.+.+ +..+. ......+...+.+.++.++..+.++.+|+.+...
T Consensus 128 ~~~-~~----------~~~~~~~ei----~~l~~~G---v~~f~--~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l 187 (418)
T PRK07369 128 ALT-LG----------GQGKQLTEL----AELAAAG---VVGFT--DGQPLENLALLRRLLEYLKPLGKPVALWPCDRSL 187 (418)
T ss_pred EEe-eC----------CCCccHhhH----HHHHHCC---CEEEE--CCCcCCCHHHHHHHHHHHHhcCCeEEEecCChhh
Confidence 111 00 000011111 2222221 22222 1222345667888899999999999999976432
Q ss_pred hh-------HHHHhhcCCCCch-------HHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCC--eEEECccchhhc-
Q 012333 249 EN-------QVVMDTRKVDHGT-------VTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGV--KVSHCPASAMRM- 310 (466)
Q Consensus 249 ~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~--~~~~~p~~~~~~- 310 (466)
.. ............. ...+...+..+.+..+.|...- +-+.++.+++.|. ...+||++-..-
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~ 267 (418)
T PRK07369 188 AGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVELIAQAKARGLPITASTTWMHLLLDT 267 (418)
T ss_pred hhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccH
Confidence 11 0000000000001 1223333344555555555431 1244555566664 456888754210
Q ss_pred -------------------cCCccHHHHHHcCCcEEEccCCCCCCCCC---CHHH--------HHHHHHHHhcccccccC
Q 012333 311 -------------------LGFAPIKEMLHADICVSLGTDGAPSNNRM---SIVD--------EMYLASLINKGREVFAN 360 (466)
Q Consensus 311 -------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~ 360 (466)
.....+++.+..|...+++|||.|+.... +++. +..+...+...
T Consensus 268 ~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~~~------ 341 (418)
T PRK07369 268 EALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNL------ 341 (418)
T ss_pred HHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHHHH------
Confidence 01124556788899999999999875211 1110 01111111100
Q ss_pred CCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 361 GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 361 ~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
....+++++++++++|.|||++||+. .|+|++|++|||+++|.+
T Consensus 342 --v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi~d~~ 385 (418)
T PRK07369 342 --VETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELILFDPQ 385 (418)
T ss_pred --HHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEEEcCC
Confidence 01124999999999999999999994 499999999999999987
|
|
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=232.33 Aligned_cols=352 Identities=13% Similarity=0.097 Sum_probs=190.8
Q ss_pred EEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCC
Q 012333 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (466)
Q Consensus 22 lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~ 101 (466)
.|.|..+. ++ ....++|.|+||||++|++.. .+.++||++| +|+|||||+|+|+...
T Consensus 2 ~~~~~~~~--~~---~~~~~di~I~dGkI~~i~~~~--------~~~~~ida~g-~vlPG~ID~HvH~r~p--------- 58 (409)
T PRK01211 2 AICGNFYY--KG---KFDYLEIEVEDGKIKSIKKDA--------GNIGKKELKG-AILPAATDIHVHFRTP--------- 58 (409)
T ss_pred eeeceeEE--cC---cEEEEEEEEECCEEEEecCCC--------CCceEEEecc-EEcCCeEEeeeccCCC---------
Confidence 45555544 32 134579999999999998642 2457999999 8999999999998321
Q ss_pred CchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHHHHHHHHHHhCCeEEeecccccCCCC
Q 012333 102 DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLGLRACLVQSTMDCGEG 176 (466)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 176 (466)
.....+ ......++++.+||||+++|+.. ....+........-...........
T Consensus 59 ---------------g~~~ke---d~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~--- 117 (409)
T PRK01211 59 ---------------GETEKE---DFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSM--- 117 (409)
T ss_pred ---------------CCcccC---cHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEec---
Confidence 111111 12234577899999999999742 1222222222222221111111110
Q ss_pred CCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHH----
Q 012333 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV---- 252 (466)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~---- 252 (466)
.... . . +. . +.+...++++..... .........+.++.++..+.++.+|+.+.......
T Consensus 118 ~~~~----~-~-------~~-~---~~g~~~~k~f~~~~~-~~~~~~~~~~~l~~~~~~g~~v~~H~E~~~l~~~~~~~~ 180 (409)
T PRK01211 118 ETGN----N-A-------LI-L---DERSIGLKVYMGGTT-NTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQFES 180 (409)
T ss_pred cCCc----h-h-------hH-H---hccCcEEEEEcCCCc-CCCccccCHHHHHHHHccCCEEEEeccChHHhhhhhhCc
Confidence 0000 0 0 11 1 112334554432210 00000112234466678899999999764321110
Q ss_pred -HHhhcCCCCch----HHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-----------------
Q 012333 253 -VMDTRKVDHGT----VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM----------------- 310 (466)
Q Consensus 253 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~----------------- 310 (466)
........... ..+.....+...+..+.|... .+.+ ..+.+.+||+.-..-
T Consensus 181 ~~~~~~~~~rP~~aE~~ai~~~~~la~~~~hi~HvSt--~~~~-----~~vt~Ev~phhL~l~~~~~~~~~~kvnPPLRs 253 (409)
T PRK01211 181 KNLRDHDLARPIECEIKAVKYVKNLDLKTKIIAHVSS--IDVI-----GRFLREVTPHHLLLNDDMPLGSYGKVNPPLRD 253 (409)
T ss_pred chHhhCCCCCCHHHHHHHHHHHHHHhCCCcEEEEecC--hhhc-----CceEEEecHHHHccccccccCCceeEcCCCCC
Confidence 00111111111 111122222233334444332 2222 245566676643210
Q ss_pred -cCCccHHHHHHcCCcEEEccCCCCCCCC-----------CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 012333 311 -LGFAPIKEMLHADICVSLGTDGAPSNNR-----------MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378 (466)
Q Consensus 311 -~~~~~~~~~~~~gi~~~~gsD~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 378 (466)
.....+++.+..|...+++|||.|+... +.-++.+.... .. .....++|++++++++|
T Consensus 254 ~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK~~~~~a~~G~~gle~~lpl~-~~---------~v~~~~isl~~~v~~~s 323 (409)
T PRK01211 254 RWTQERLLEEYISGRFDILSSDHAPHTEEDKQEFEYAKSGIIGVETRVPLF-LA---------LVKKKILPLDVLYKTAI 323 (409)
T ss_pred HHHHHHHHHHHhCCCCCEEeCCCCCCChhHhCCHhhCCCCCCcHHHHHHHH-HH---------HHHcCCCCHHHHHHHHH
Confidence 1123456678889999999999986421 11111111111 11 01123599999999999
Q ss_pred HHHHHHcCCCCcccccccCCccCEEEEcCCC-CCCCC-------cCCcccceecccCCCCeeEEEEccEEEEECCeeeec
Q 012333 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMVP-------VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450 (466)
Q Consensus 379 ~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~-~~~~~-------~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 450 (466)
.|||++||| + +|+|++|++|||||||++. |...+ ...|+..+. -. +|..||++|++||+++++.+.
T Consensus 324 ~nPAki~gl-~-kG~l~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~spf~G~~---~~-~v~~tiv~G~~v~~~~~~~~~ 397 (409)
T PRK01211 324 ERPASLFGI-K-KGKIEEGYDADFMAFDFTNIKKINDKRLHSKCPVSPFNGFD---AI-FPSHVIMRGEVVIDNYELISE 397 (409)
T ss_pred HHHHHHhCC-C-CCcccCCCcCCEEEEcCCCeEEEChHHhhccCCCCCCCCCE---ec-cEEEEEECCEEEEECCEEccc
Confidence 999999999 3 6999999999999999983 32211 122322221 12 799999999999999888755
Q ss_pred cHHHHHH
Q 012333 451 MRGRLFQ 457 (466)
Q Consensus 451 ~~~~~~~ 457 (466)
..|+++.
T Consensus 398 ~~G~~~~ 404 (409)
T PRK01211 398 RTGKFVP 404 (409)
T ss_pred cCceEec
Confidence 4566553
|
|
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=223.43 Aligned_cols=352 Identities=16% Similarity=0.142 Sum_probs=204.1
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++++ ..+.+.+|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|.+...
T Consensus 2 ~~i~n~~i~~~~---~~~~~~~v~IedgkI~~I~~~~~~----~-~~~~~ID~~G~~l~PG~ID~HvHG~~g~------- 66 (382)
T PRK11170 2 YALTNGRIYTGH---EVLDDHAVVIADGLIEAVCPVAEL----P-PGIEQRDLNGAILSPGFIDLQLNGCGGV------- 66 (382)
T ss_pred EEEEeeEEECCC---CeEeCCEEEEECCEEEEecCCccC----C-CCCeEEeCCCCEEccceeeeeecCccCc-------
Confidence 679999999643 456677999999999999875322 1 2457999999999999999999974210
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-CHHHH---HHHHHH-hCCeEEeecccccCCC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEM---AKAVEL-LGLRACLVQSTMDCGE 175 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~~~~~---~~~~~~-~g~~~~~~~~~~~~~~ 175 (466)
++ .........+ ......+.++++|||++.+.... ....+ .+.... ..........+..+++
T Consensus 67 -~~---------~~~~~~~~~~---~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGP 133 (382)
T PRK11170 67 -QF---------NDTAEAISVE---TLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGP 133 (382)
T ss_pred -cc---------ccCccCCCHH---HHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecC
Confidence 00 0000001111 22233355799999999885422 22222 222222 1111223344555677
Q ss_pred CCCcccccCChHHHHH-HHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 176 GLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
++++........+.+. ...+.++.+.+.. +.++...-.+... . .++++.+.+.|+.+++-.....++.....
T Consensus 134 fi~~~~~Gah~~~~~~~p~~~~~~~~~~~~-~~i~~iTlAPE~~--~----~~~i~~l~~~gi~vs~GHs~A~~~~~~~a 206 (382)
T PRK11170 134 YLNLVKKGTHNPEFIRKPDAEMVDFLCENA-DVITKVTLAPEMV--D----AEVIRKLVEAGIVVSAGHSNATYEEAKAG 206 (382)
T ss_pred CCCcccCCCCCHHHhcCcCHHHHHHHHhcc-CCEEEEEECCCCC--c----HHHHHHHHHCCcEEEeeCCcCCHHHHHHH
Confidence 7777666555555543 2234455555443 3455433333321 1 25677788888888774444333322211
Q ss_pred hhcCCCCchHHHHhhhccCC-------------CC---eeEEEeecCChhhHHHHHhcCCeEEECccchhhccCCccHHH
Q 012333 255 DTRKVDHGTVTFLDKIEFLQ-------------NN---LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKE 318 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~ 318 (466)
...|.. ...+.++.+..+. ++ .+|..+.|+.++.++.+.+..-.-.+.-+..++..+.++-..
T Consensus 207 ~~~Ga~-~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~~~k~~~~~lvtDa~~~~G~~~g~y 285 (382)
T PRK11170 207 FRAGIT-FATHLYNAMPYITGREPGLVGAILDEPDVYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQF 285 (382)
T ss_pred HHcCCC-EEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcCcccCCHHHHHHHHHhcCCcEEEEeccccCCCCCCCeE
Confidence 111111 0111222222111 11 378889999999999886664221112233333333221211
Q ss_pred HHHcCCcEEE------ccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 319 MLHADICVSL------GTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 319 ~~~~gi~~~~------gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
.+ .|..+.+ -.|....++...+...++..... .+++++++++++|.|||+.+|+++++|
T Consensus 286 ~l-~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~--------------~~~~~~eal~~aT~npA~~lgl~~~~G 350 (382)
T PRK11170 286 IF-AGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEH--------------VGIALDEALRMATLYPARAIGVDKRLG 350 (382)
T ss_pred EE-CCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 11 1222221 12333333456677777765321 259999999999999999999977789
Q ss_pred ccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 393 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 393 ~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
+|++|++|||+|||.+ .++..||++|++++.
T Consensus 351 ~i~~G~~ADlvvld~~--------------------~~v~~v~~~G~~~~~ 381 (382)
T PRK11170 351 SIEAGKVANLTAFTRD--------------------FKITKTIVNGNEVVT 381 (382)
T ss_pred ccCCCCcCCEEEECCC--------------------CcEEEEEECCEEeec
Confidence 9999999999999987 589999999998874
|
|
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=222.68 Aligned_cols=129 Identities=19% Similarity=0.108 Sum_probs=83.4
Q ss_pred HHcCCcEEEccCCCCCCCCCCHHHHHHHH--------HHH--hc-ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 320 LHADICVSLGTDGAPSNNRMSIVDEMYLA--------SLI--NK-GREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 320 ~~~gi~~~~gsD~~~~~~~~~~~~~~~~~--------~~~--~~-~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.+...++.+.||||..++......-+++. .+- .+ ........ .....+|++++++++|.+||++||+.
T Consensus 372 ~~dp~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~-~~~Re~sL~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 372 IKDPWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLG-GIDREYSLYEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred cCCcceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccc-cccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 45667899999998765543333332221 110 00 00000001 12246999999999999999999996
Q ss_pred CcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHH
Q 012333 389 NDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRL 455 (466)
Q Consensus 389 ~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~ 455 (466)
++|+|++|++|||+|+|.+.....+ +...+. .. ...+++||++|++|+++|+++....|+.
T Consensus 451 -dkG~L~pGa~ADIaI~D~~~~~~~~---~~~~v~-~~-~~~v~~Tik~G~vV~~dGei~~~~~G~~ 511 (556)
T TIGR03121 451 -DRGHLGVGADADIAVYDINPDDVDT---DYADVE-KA-FSTALYVFKDGEIVVKDGEIVETPWGRT 511 (556)
T ss_pred -CCCCcCCCCcCCEEEEeCcccccCC---chHHHh-hc-cCCccEEEECCEEEEECCEEccCCCCcE
Confidence 4699999999999999987322211 111111 11 2579999999999999998876644443
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=200.12 Aligned_cols=319 Identities=18% Similarity=0.184 Sum_probs=190.4
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
++.|++++|++++++- ...-+-.+|.|.||||+++++ ...+ ..+++||++|++|.||+||.|+|.+.....
T Consensus 2 mqfdiLLt~~rlidpa--~g~d~~tniai~ngkIaa~~d-~~ap-----a~tq~Ida~Gc~VspG~iDlHvHvy~ggt~- 72 (386)
T COG3964 2 MQFDILLTGGRLIDPA--RGIDEITNIAIINGKIAAADD-YPAP-----AETQIIDADGCIVSPGLIDLHVHVYYGGTE- 72 (386)
T ss_pred CccceeeeCCeecccc--cccCccceeeeecCeEEeccC-cCCC-----hhheEEccCccEeccCeeeeeeEEecCCCc-
Confidence 4689999999999532 234455699999999999994 3221 247899999999999999999998642211
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHHHHh-CCeEEeeccccc
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELL-GLRACLVQSTMD 172 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~~~~-g~~~~~~~~~~~ 172 (466)
.--.++.+ ....||||++|.|+.. ...+.+...+. -.|+.....+..
T Consensus 73 --------------------~~v~pd~~---------ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~ 123 (386)
T COG3964 73 --------------------GGVRPDMY---------GAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSP 123 (386)
T ss_pred --------------------cCcCHHHc---------cccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccC
Confidence 11112221 5689999999987543 33333333322 122222111111
Q ss_pred CCC-CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEee--cccccCCHHHHHHHHHHHHHcCCccceeccCCcch
Q 012333 173 CGE-GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI--RQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (466)
Q Consensus 173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~ 249 (466)
.|. +.+..+..... ..+...+.+++..+.- -.+++-... -+.+..++ ++...+.++..++|+++|..+.+..
T Consensus 124 ~Gl~a~nE~~d~~ni--d~d~i~aa~reh~d~i-vGlKvR~s~~~~g~~GitP--l~la~~ia~~~klPlmvHigePp~~ 198 (386)
T COG3964 124 PGLTASNELYDPDNI--DEDKIHAAFREHRDVI-VGLKVRVSTEDIGEYGITP--LTLALRIANDLKLPLMVHIGEPPVL 198 (386)
T ss_pred cceeeehhhCChhhC--CHHHHHHHHHhCcCcE-EEEEEEeeeccccccCCch--HHHHHHHHhhcCCceEEecCCCCcc
Confidence 111 11111111111 1123444454443221 112221211 12233333 5666788899999999999885543
Q ss_pred hHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-----------hhHHHHHhcCCeEEECccchhhccCCccHHH
Q 012333 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKE 318 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-----------~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~ 318 (466)
.... .+.+.+..++.||..--+ ..+++++++|+.+..-.-.. ...+.-.++
T Consensus 199 ~dEv----------------lerL~~GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~a--sfsf~vAr~ 260 (386)
T COG3964 199 MDEV----------------LERLRRGDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRA--SFSFNVARR 260 (386)
T ss_pred HHHH----------------HHhccCCceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcc--eeeHHHHHH
Confidence 3322 233445567888876322 44778888888776542211 012234577
Q ss_pred HHHcCC-cEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccC
Q 012333 319 MLHADI-CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAG 397 (466)
Q Consensus 319 ~~~~gi-~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G 397 (466)
++..|+ +..|+||-...+ .++ +.....+..++|.. .-++++.+.++++|.|||..+++. .+|+|+||
T Consensus 261 aia~GllP~~ISSDlh~~~-~~n-~Pv~dla~~mSKll---------algmpl~~Vi~avT~npA~~i~l~-~~gtLa~G 328 (386)
T COG3964 261 AIANGLLPDIISSDLHTIT-KLN-GPVYDLAWIMSKLL---------ALGMPLTDVINAVTHNPAVLIGLA-EIGTLAPG 328 (386)
T ss_pred HHhcCCCcceeeccceeee-ecC-chHHHHHHHHHHHH---------HcCCcHHHHHHHHhcCHHHHhCcc-ccCccCCC
Confidence 888885 689999975432 011 12222233333321 225999999999999999999995 78999999
Q ss_pred CccCEEEEcCC
Q 012333 398 KKADMVVVDPF 408 (466)
Q Consensus 398 ~~ADlvv~d~~ 408 (466)
..|||+||+-.
T Consensus 329 ~~aD~tvf~lk 339 (386)
T COG3964 329 AFADITVFKLK 339 (386)
T ss_pred cccceEEEEec
Confidence 99999999876
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=228.20 Aligned_cols=343 Identities=18% Similarity=0.166 Sum_probs=189.0
Q ss_pred eceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCC
Q 012333 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (466)
Q Consensus 39 ~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (466)
..++|+|+||+|++|++.. . + .+.++||++|++|+|||||+|+|+... ..
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~----~-~~~~~ida~g~~v~PG~ID~H~H~~~~------------------------~~ 53 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-I----P-PDAEVIDAKGLLVLPGFIDLHVHLRDP------------------------GE 53 (411)
T ss_pred EEEEEEEECCEEEEeeccC-C----C-CCCeEEECCCCEEecCEEEcccCCCCC------------------------CC
Confidence 4569999999999997421 1 1 255799999999999999999998310 00
Q ss_pred ChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHHHHHHHHHHhC----CeEEeecccccCCCCCCcccccCChHHH
Q 012333 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLG----LRACLVQSTMDCGEGLPASWAVRTTDDC 189 (466)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
.. ..........++.+|||++++++.. ....+........ ......... ... .....
T Consensus 54 ~~---~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~-------~~~----~~~~~ 119 (411)
T TIGR00857 54 EY---KEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGV-------TQG----NQGKE 119 (411)
T ss_pred cc---HhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE-------ecC----Ccccc
Confidence 00 1122233456899999999997532 1222222222211 111111111 100 00011
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh-------hcCCCCc
Q 012333 190 IQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD-------TRKVDHG 262 (466)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~-------~~~~~~~ 262 (466)
+.+..+ +.+. +.+...+.....+..++..+.++++.+++++.++.+|+.+.......... .+.....
T Consensus 120 l~e~~~----l~~~--Gv~g~~f~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p 193 (411)
T TIGR00857 120 LTEAYE----LKEA--GAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARP 193 (411)
T ss_pred HHHHHH----HHHC--CcEEEEEEeCCcccCCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCC
Confidence 122222 2121 22221111122234577889999999999999999999764321111000 0000000
Q ss_pred -------hHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcC--CeEEECccchhhc--------------------cC
Q 012333 263 -------TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAG--VKVSHCPASAMRM--------------------LG 312 (466)
Q Consensus 263 -------~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g--~~~~~~p~~~~~~--------------------~~ 312 (466)
....+......+.+..+.|...- +-+.++.+++.| +.+.+||++...- ..
T Consensus 194 ~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~ 273 (411)
T TIGR00857 194 PEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKED 273 (411)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHH
Confidence 11122222233445555555441 114455556666 4456777543200 11
Q ss_pred CccHHHHHHcCCcEEEccCCCCCCCCCC---HHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 012333 313 FAPIKEMLHADICVSLGTDGAPSNNRMS---IVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381 (466)
Q Consensus 313 ~~~~~~~~~~gi~~~~gsD~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~ 381 (466)
...+.+.+..|...+++|||.|...... ++. +.....+.... ...+++++++++++|.+|
T Consensus 274 ~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~---------~~~~~~~~~~~~~~t~~p 344 (411)
T TIGR00857 274 RLALIEGLKDGIIDIIATDHAPHTLEEKTKEFAAAPPGIPGLETALPLLLQLL---------VKGLISLKDLIRMLSINP 344 (411)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCChHHccCCHhhCCCCceeHHHHHHHHHHHH---------HhCCCCHHHHHHHHhHHH
Confidence 2346678899999999999988642110 110 01111111110 112499999999999999
Q ss_pred HHHcCCCCcccccccCCccCEEEEcCCCCCCCCc--------CCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 382 A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
|+++|+.+ +|+|++|++|||+++|.+.....+. .+|+..... ..+|..|+++|++||+|
T Consensus 345 a~~~g~~~-~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~sp~~g~~~---~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 345 ARIFGLPD-KGTLEEGNPADITVFDLKKEWTINAETFYSKAKNTPFEGMSL---KGKPIATILRGKVVYED 411 (411)
T ss_pred HHHhCCCC-CCccCCCCcCCEEEEcCCCCEEEchHHCccCCCCCCcCCCEE---EeEEEEEEECCEEEecC
Confidence 99999954 4999999999999999883211111 112221111 23799999999999975
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=221.32 Aligned_cols=346 Identities=14% Similarity=0.169 Sum_probs=182.4
Q ss_pred ccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCch
Q 012333 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLM 104 (466)
Q Consensus 25 n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 104 (466)
+++|++.+ .+ ..++|+|+||+|++|++.. . ++.++||++|++|+|||||+|+|+...
T Consensus 3 ~~~v~~~~---~~-~~~~i~i~~G~I~~i~~~~-~------~~~~~iD~~g~~v~PG~ID~HvH~~~~------------ 59 (398)
T PRK04250 3 EGKFLLKG---RI-VEGGIGIENGRISKISLRD-L------KGKEVIKVKGGIILPGLIDVHVHLRDF------------ 59 (398)
T ss_pred eEEEEECC---cE-EEEEEEEECCEEEEeeCCC-C------CCCeEEECCCCEEccCEEeccccccCC------------
Confidence 56777632 22 3679999999999997411 1 255899999999999999999998210
Q ss_pred HhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHHHHhCCeEEeecccccCCCCCCc
Q 012333 105 TWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (466)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 179 (466)
.... ........+.++.+|||++.+++... ...+........-+......... . .
T Consensus 60 ------------~~~~---~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~---~- 119 (398)
T PRK04250 60 ------------EESY---KETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-L---I- 119 (398)
T ss_pred ------------CCCc---HHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-e---c-
Confidence 0011 11223345678999999999987432 22222222222222211111110 0 0
Q ss_pred ccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCC
Q 012333 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (466)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~ 259 (466)
..+. .+..+. .. ..++.++.... .....+.+... .+ +.+..+.+|+.+...... ..+.
T Consensus 120 ---~~~~----~~l~~l----~~---~~~k~f~~~~~-~~~~~~~~~~~--~~-~~~~~v~~H~E~~~~~~~----~~~~ 177 (398)
T PRK04250 120 ---AGNC----EKAEEI----KA---DFYKIFMGAST-GGIFSENFEVD--YA-CAPGIVSVHAEDPELIRE----FPER 177 (398)
T ss_pred ---CCCH----HHHHHH----Hh---hheEEEEecCC-CchhHHHHHHH--HH-hcCCeEEEEecChhhhhc----ccCC
Confidence 0011 111111 11 12333322211 11111122211 22 234468888865332110 0000
Q ss_pred CC-----chHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcC---CeEEECccchhhc----------cCCccH-----
Q 012333 260 DH-----GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG---VKVSHCPASAMRM----------LGFAPI----- 316 (466)
Q Consensus 260 ~~-----~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g---~~~~~~p~~~~~~----------~~~~~~----- 316 (466)
.. .....+......+.+..+.|.. +.+.++.+++.| +.+.+||++-..- .-.+|+
T Consensus 178 p~~aE~~av~r~~~la~~~~~~lhi~HvS--t~~~~~~i~~~g~~~vt~Ev~ph~L~l~~~~~~~~~~~k~~PPLR~~~d 255 (398)
T PRK04250 178 PPEAEVVAIERALEAGKKLKKPLHICHIS--TKDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPLLKVYPPLRSEED 255 (398)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeCC--CHHHHHHHHHcCCCcEEEEeCHHHhccCHHHHCCCCceEEcCCCCCHHH
Confidence 00 0111222223334444444443 245566666655 4456777643210 011233
Q ss_pred ----HHHHHcCCcEEEccCCCCCC--------CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHH
Q 012333 317 ----KEMLHADICVSLGTDGAPSN--------NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKS 384 (466)
Q Consensus 317 ----~~~~~~gi~~~~gsD~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~ 384 (466)
++.+. ...+++|||.|+. +++.-++.+.... ... .....+|++++++++|.|||++
T Consensus 256 ~~aL~~~l~--~Id~i~sDHaP~~~~~k~~~~~G~~g~e~~lpl~-~~~---------v~~~~lsl~~~v~~~t~npAk~ 323 (398)
T PRK04250 256 RKALWENFS--KIPIIASDHAPHTLEDKEAGAAGIPGLETEVPLL-LDA---------ANKGMISLFDIVEKMHDNPARI 323 (398)
T ss_pred HHHHHHhhc--cCCEEEcCCcccCHHHhhcCCCCcchHHHHHHHH-HHH---------HHhcCCCHHHHHHHHHHHHHHH
Confidence 23333 3678999999873 1222222221111 111 1122499999999999999999
Q ss_pred cCCCCcccccccCCccCEEEEcCCCCCCCCc--------CCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHH
Q 012333 385 VLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGR 454 (466)
Q Consensus 385 lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~ 454 (466)
+|+. .+| |++|++|||+|+|++.....+. .+|+..... ..+|..||++|++||++|++++...|+
T Consensus 324 lgl~-~~G-L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~sp~~g~~l---~g~v~~tiv~G~~v~~~g~~~~~~~G~ 396 (398)
T PRK04250 324 FGIK-NYG-IEEGNYANFAVFDMKKEWTIKAEELYTKAGWTPYEGFKL---KGKVIMTILRGEVVMEDDEIIGKPRGV 396 (398)
T ss_pred hCCC-CcC-ccCCCcCCEEEEcCCCcEEEChhhccccCCCCCCCCCEE---eeEEEEEEECCEEEEECCEEcCCCCCe
Confidence 9994 579 9999999999999983221111 122222211 247999999999999999987655444
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=228.29 Aligned_cols=334 Identities=16% Similarity=0.186 Sum_probs=194.1
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
..+.|++|+|++|++... +. +..++|+|++|+|++|++.... . .+.++||++|++|+|||||+|+|+..
T Consensus 27 ~~~~dllI~ng~vv~~~~-~~-~~~~~V~I~~GrI~~Vg~~~~~----~-~~~~vIDa~G~~v~PGlIDaHvHies---- 95 (588)
T PRK10027 27 DAVADYIIDNVSILDLIN-GG-EISGPIVIKGRYIAGVGAEYAD----A-PALQRIDARGATAVPGFIDAHLHIES---- 95 (588)
T ss_pred CCCCCEEEECcEEEeCCC-Cc-EEeeEEEEECCEEEEeCCCCCC----C-CCCeEEECCCCEEEECeEeccccCCc----
Confidence 346789999999996432 23 3457999999999999764321 1 24689999999999999999999932
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------CHHHHHHHHHHhCCeEEee
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLV 167 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~~~~~ 167 (466)
.+...+.+.. .++.+||||+++++.. ....+.+.....++..+..
T Consensus 96 ---------------------s~~~p~~~a~------aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~ 148 (588)
T PRK10027 96 ---------------------SMMTPVTFET------ATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQ 148 (588)
T ss_pred ---------------------ccCCHhHHHH------HHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEe
Confidence 2222233322 3789999999985422 2333444555566665543
Q ss_pred cccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCc
Q 012333 168 QSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
.... .+..+ ++-.....-..++..++++.-. --.+.-.+..++....+++.+.++.. + .+.++.-|+-...
T Consensus 149 ~ps~--vpa~~-~~Et~Ga~~~~~~~~~~l~~~~---v~glgEvMn~~~V~~~d~~~~~ki~~-~--~~~~idGH~p~l~ 219 (588)
T PRK10027 149 VSSC--VPALE-GCDVNGASFTLEQMLAWRDHPQ---VTGLAEMMDYPGVISGQNALLDKLDA-F--RHLTLDGHCPGLG 219 (588)
T ss_pred eccc--CcCCc-ccccCCCcCCHHHHHHHhcCCC---ceeEEeccCccccccCCHHHHHHHHH-h--CCCceECCCCCCC
Confidence 3221 11111 0100000011122233332100 01111123345555567777777774 3 7888888875322
Q ss_pred chhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhccCCccHHHHHHc-C-Cc
Q 012333 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-IC 325 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~-g-i~ 325 (466)
.. ....+...+.. ..|-. .+.++...-.+.|+.+.+.-.+..+ ....+..++.. . -.
T Consensus 220 g~-------------~L~ay~aaGi~-----sDHE~-~t~eea~eklr~Gm~v~iRegS~~~--nl~~l~~~~~~~~~~~ 278 (588)
T PRK10027 220 GK-------------ELNAYIAAGIE-----NCHES-YQLEEGRRKLQLGMSLMIREGSAAR--NLNALAPLINEFNSPQ 278 (588)
T ss_pred hH-------------HHHHHHHcCCC-----CCccc-CCHHHHHHHHHCCCEEEEeCCcccc--CHHHHHHHhhccCCCe
Confidence 11 12222222221 22433 3566666666789988876544322 12222233322 1 35
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEE
Q 012333 326 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 405 (466)
Q Consensus 326 ~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~ 405 (466)
++++||..... ++...-+....+.+.. ...++++++|++++|.|||+++|++ ++|+|++|+.|||+++
T Consensus 279 ~~l~TDd~~~~---~l~~~Ghi~~~vr~av--------~~~Gi~~~~Ai~mAT~nPA~~lgl~-d~G~IapG~~ADlvvl 346 (588)
T PRK10027 279 CMLCTDDRNPW---EIAHEGHIDALIRRLI--------EQHNVPLHVAYRVASWSTARHFGLN-HLGLLAPGKQADIVLL 346 (588)
T ss_pred EEEEcCCCChH---HHHhccCHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHcCCC-CCcccCCCCcCCEEEE
Confidence 78999975321 1211111111111100 1135999999999999999999996 4799999999999999
Q ss_pred cCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 406 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 406 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
|.. ...++..||++|++|+++ ++.
T Consensus 347 d~l------------------~~~~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 347 SDA------------------RKVTVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred ccC------------------CCceEEEEEECCEEeecc-ccc
Confidence 964 124789999999999997 643
|
|
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=217.45 Aligned_cols=125 Identities=18% Similarity=0.080 Sum_probs=81.9
Q ss_pred HHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccc------------cccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE------------VFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
+++....+.++||||..++......-++..+ ..+.+. ..... .....+|++++++++|.+||++||
T Consensus 368 l~~dp~~~~~tTDhPn~gpf~~YP~~i~~lm-~~~~r~~~~~~~~~~~~~~~~l~-~~~reLSLeei~~mtT~nPAKiLG 445 (541)
T cd01304 368 LIDDPWKVILTTDHPNGGPFTRYPRIIAWLM-SKKFRAEEIATLHKWAQDRSALP-GIDREYSLYEIAIMTRAGPAKLLG 445 (541)
T ss_pred HhCCcceEEeecCCCCCCCcccHHHHHHHHh-CHHHHHHHHHhcCHHHHhhcccc-CCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3456678999999986654333333333221 011111 00001 122359999999999999999999
Q ss_pred CCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeec
Q 012333 387 WDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450 (466)
Q Consensus 387 l~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 450 (466)
+. ++|+|++|++|||+|+|.+..+..+. +..+. .. -..+|..||++|++|+++|+++..
T Consensus 446 L~-~kG~L~~G~~ADLvIfD~n~~~v~~~-dl~s~--~~-~~gkV~~Tiv~GkvVv~dGeiv~~ 504 (541)
T cd01304 446 LS-DKGHLGVGADADIAIYDDDPDQVDPS-DYEKV--EK-AFSRAAYVLKDGEIVVKDGEVVAE 504 (541)
T ss_pred CC-CCCccCCCCcCCEEEEeCCcCccCch-hhcCc--ee-ecCcEEEEEECCEEEEECCEEccC
Confidence 95 57999999999999999885433221 21111 11 135799999999999999877644
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=213.94 Aligned_cols=256 Identities=20% Similarity=0.278 Sum_probs=192.1
Q ss_pred EEeecccccccCCcccccccccCCCCchHhh---hhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc---CH
Q 012333 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWL---HDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HV 150 (466)
Q Consensus 77 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---~~ 150 (466)
+|+|||||+|+|+.++.+|+...+.++.+|+ .++.|+.+..+++++.+......+.+++++||||+.|+... ..
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 5899999999999999999998888888865 44556777889999999999899999999999999997532 34
Q ss_pred HHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHH
Q 012333 151 SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRD 230 (466)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 230 (466)
+.+.++..+.|+|. ...++. +. . ....+ + +.+ +...++++.+..++ ++++++
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~~----~~-~-----~~~~~---~-~~~--------~~~~~~~~~~~~~~---l~~~~~ 132 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILGR----PT-E-----PDDPE---I-LLE--------VADGLGLSSANDVD---LEDILE 132 (263)
T ss_pred HHHHHHHHhcCCCc---eEEecc----CC-c-----chHHH---H-HHh--------hcccccCCCCCccC---HHHHHH
Confidence 56778888899984 111111 10 0 01111 1 111 11125555555555 899999
Q ss_pred HHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc
Q 012333 231 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 310 (466)
Q Consensus 231 ~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 310 (466)
+|+++|+++++|+.+...+. +...++.+... +.+ .+.|+.++++++++++++.|+.+++||.+++..
T Consensus 133 ~A~~~g~~v~~H~~e~~~~~---------g~~~i~~~~~~---~~~-~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l 199 (263)
T cd01305 133 LLRRRGKLFAIHASETRESV---------GMTDIERALDL---EPD-LLVHGTHLTDEDLELVRENGVPVVLCPRSNLYF 199 (263)
T ss_pred HHHHCCCeeEEecCCCCCCC---------CchhHHHHHhC---CCC-EEEEcCCCCHHHHHHHHHcCCcEEEChhhHHHh
Confidence 99999999999998865432 11123333332 333 479999999999999999999999999998876
Q ss_pred -cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHH
Q 012333 311 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKS 384 (466)
Q Consensus 311 -~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~ 384 (466)
.+.+|++++++.|+++++|||.... ...+++.+++.+....+.. ..+++.++++++|.|+|++
T Consensus 200 ~~g~~p~~~l~~~Gv~v~lGtD~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 200 GVGIPPVAELLKLGIKVLLGTDNVMV-NEPDMWAEMEFLAKYSRLQ----------GYLSPLEILRMATVNAAEF 263 (263)
T ss_pred CCCCCCHHHHHHCCCcEEEECCCCcc-CCCCHHHHHHHHHHHhccc----------ccCCHHHHHHHHhhccccC
Confidence 6789999999999999999998654 3568999999887655421 1379999999999999974
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=222.34 Aligned_cols=339 Identities=24% Similarity=0.232 Sum_probs=192.7
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++ ....+.+|.|++|+|+.|++.... + ...++||++|++|+|||||+|+|.....
T Consensus 1 ~~i~~~~v~~~----~~~~~~~i~i~~g~I~~i~~~~~~----~-~~~~vid~~g~~l~PG~iD~H~H~~~g~------- 64 (374)
T cd00854 1 LIIKNARILTP----GGLEDGAVLVEDGKIVAIGPEDEL----E-EADEIIDLKGQYLVPGFIDIHIHGGGGA------- 64 (374)
T ss_pred CEEEeEEEeCC----CEEcccEEEEECCEEEEecCCCCc----c-cCCcEEECCCCEecccEEEeeecccCCC-------
Confidence 47999999953 345678999999999999875432 1 2457999999999999999999984210
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-HHHHH---HHHH---Hh--CCeEEeecccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMA---KAVE---LL--GLRACLVQSTM 171 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-~~~~~---~~~~---~~--g~~~~~~~~~~ 171 (466)
.... . ..+ ......+.++++|||+++++.... ...+. .... +. |.+.+- +.
T Consensus 65 ------------~~~~-~-~~e---~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g---~h 124 (374)
T cd00854 65 ------------DFMD-G-TAE---ALKTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILG---IH 124 (374)
T ss_pred ------------CCCC-C-CHH---HHHHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEE---Ee
Confidence 0000 0 112 222345668999999999976222 22211 1111 11 223221 12
Q ss_pred cCCCCCCcccccCChHHHH-HHHHHHHHHhccCCCCCeEEEEeecccccCCHHHH--HHHHHHHHHcCCccc-eeccCCc
Q 012333 172 DCGEGLPASWAVRTTDDCI-QSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL--LETRDMAREFKTGIH-MHVAEIP 247 (466)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~a~~~~~~v~-~H~~~~~ 247 (466)
..++.+++..........+ ....+.++++...+.+.++.+. ..+|.. .++++.++++|+.+. -|.....
T Consensus 125 leGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~t-------laPE~~~~~~~i~~~~~~gi~v~~GH~~a~~ 197 (374)
T cd00854 125 LEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLVT-------LAPELDGALELIRYLVERGIIVSIGHSDATY 197 (374)
T ss_pred eecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEEE-------ECCCCCChHHHHHHHHHCCeEEEeeCCcCCH
Confidence 2343333322111111111 1112233344444446677652 233333 677888999999996 6765331
Q ss_pred chh--HHHHhhcCCCCc-------------hHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcC--CeEEECccchhhc
Q 012333 248 YEN--QVVMDTRKVDHG-------------TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG--VKVSHCPASAMRM 310 (466)
Q Consensus 248 ~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g--~~~~~~p~~~~~~ 310 (466)
... ..........|. .....-....+ .-.++.|+.|++++.++.+.+.. -.+.+++-+....
T Consensus 198 ~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~-~~~li~dg~Hv~~~~~~~~~r~~g~~~~~lvtD~~~~~ 276 (374)
T cd00854 198 EQAVAAFEAGATHVTHLFNAMSPLHHREPGVVGAALSDDDV-YAELIADGIHVHPAAVRLAYRAKGADKIVLVTDAMAAA 276 (374)
T ss_pred HHHHHHHHcCCCeeeECCCCCCCcCCCCCcHHHHhhcCCCC-eEEEEcCCCcCCHHHHHHHHHhcCCCcEEEEecccccc
Confidence 111 111111111110 01100000000 01278899999999999998884 3455554433211
Q ss_pred ---cCCccHHHH--HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 311 ---LGFAPIKEM--LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 311 ---~~~~~~~~~--~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
.+.+++... ...+-.+.+.+|... +...++.+.++..... .+++++++++++|.|||+++
T Consensus 277 G~~~g~y~~~~~~~~~~~~~~~~~~g~la-G~~~~l~~~~~~l~~~--------------~~l~~~~al~~aT~npA~~l 341 (374)
T cd00854 277 GLPDGEYELGGQTVTVKDGVARLADGTLA-GSTLTMDQAVRNMVKW--------------GGCPLEEAVRMASLNPAKLL 341 (374)
T ss_pred CCCCCeEEECCEEEEEECCEEEcCCCCee-ehHhhHHHHHHHHHHh--------------hCCCHHHHHHHHhHHHHHHc
Confidence 122222211 011122233344322 2335667776654322 13899999999999999999
Q ss_pred CCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEcc
Q 012333 386 LWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438 (466)
Q Consensus 386 gl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 438 (466)
|++++.|+|++|+.|||+++|.+ .++..||++|
T Consensus 342 g~~~~~G~i~~G~~ADlvv~d~~--------------------~~v~~~~~~G 374 (374)
T cd00854 342 GLDDRKGSLKPGKDADLVVLDDD--------------------LNVKATWING 374 (374)
T ss_pred CCCCCcCCcCCCCcCCEEEECCC--------------------CcEEEEEeCc
Confidence 99877899999999999999998 5899999887
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=211.25 Aligned_cols=326 Identities=14% Similarity=0.140 Sum_probs=182.6
Q ss_pred eceEEEEECCEEEEEcCCchhhhhhccCCCeEEeC-CCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCC
Q 012333 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDL-QSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESN 117 (466)
Q Consensus 39 ~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~-~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (466)
.+..|.+++|+|..|++.. + .++++||+ +|++|+|||||+|+|+... .
T Consensus 12 ~~~~~~~~~~~~~~i~~~~------~-~~~~~id~~~G~~vlPG~ID~HvH~r~p------------------------g 60 (392)
T PRK00369 12 GKEIKEICINFDRRIKEIK------S-RCKPDLDLPQGTLILPGAIDLHVHLRGL------------------------K 60 (392)
T ss_pred CCceEEEeeeeeeeEeecc------C-CCCceeecCCCCEEeCCEEEcccccCCC------------------------C
Confidence 3447788899998888752 1 36789999 6999999999999998320 1
Q ss_pred CChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHH
Q 012333 118 MTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQS 192 (466)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
....+ ......++++.+||||+++|+... ...+........-.......... +... .. .
T Consensus 61 ~~~~e---d~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~---~~~~-----~~----~- 124 (392)
T PRK00369 61 LSYKE---DVASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEYYSRVDYFVYS---GVTK-----DP----E- 124 (392)
T ss_pred Ccccc---cHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCCeEEEEEEe---eccC-----CH----H-
Confidence 11111 122345678999999999987431 22222222222222111111111 1110 11 1
Q ss_pred HHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCch---HHHHhh
Q 012333 193 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT---VTFLDK 269 (466)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 269 (466)
+ +..+ +...++.+. . .. ...++++.+.+++..+.+|+.+....... .+..... ...+..
T Consensus 125 --e-l~~~---~~~g~k~f~---~--~~---~~~~~~~~~~~~~~~v~~HaE~~~l~~~~----~~~~rp~~aE~~ai~~ 186 (392)
T PRK00369 125 --K-VDKL---PIAGYKIFP---E--DL---EREETFRVLLKSRKLKILHPEVPLALKSN----RKLRRNCWYEIAALYY 186 (392)
T ss_pred --H-HHHh---hCceEEEEC---C--CC---chHHHHHHHHHhCCEEEEeCCCHHHhhcc----hhcccCHHHHHHHHHH
Confidence 1 1111 223344431 1 11 12233444555668899999764321110 1111111 111122
Q ss_pred hccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-------cCCc---------cHHHHHHcCCcEEEccCCC
Q 012333 270 IEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-------LGFA---------PIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 270 ~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-------~~~~---------~~~~~~~~gi~~~~gsD~~ 333 (466)
...+ .+..+.|.. +.+.++.+++.|+.+.+||++-+.- .-.+ .+++.+.. ..+++|||.
T Consensus 187 ~~~~-~~lhi~HvS--t~~~v~~ak~~gvt~Ev~pHhL~l~~~~~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHa 261 (392)
T PRK00369 187 VKDY-QNVHITHAS--NPRTVRLAKELGFTVDITPHHLLVNGEKDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHA 261 (392)
T ss_pred HHHh-CCEEEEECC--CHHHHHHHHHCCCeEEechhHheeccCCCCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCC
Confidence 2222 344455544 2466788888898999999865321 0112 33344555 678999999
Q ss_pred CCCCCCC---HH---------HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccC
Q 012333 334 PSNNRMS---IV---------DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 401 (466)
Q Consensus 334 ~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~AD 401 (466)
|+..... ++ +.. ...+... ....+++++++++++|.|||+++|+. .|.|++|++||
T Consensus 262 P~~~~~K~~~f~~~~~Gi~GlE~~-lpll~~~---------v~~~~lsl~~~v~~~s~nPA~ilgl~--~g~i~~G~~AD 329 (392)
T PRK00369 262 PHSSFEKLQPYEVCPPGIAALSFT-PPFIYTL---------VSKGILSIDRAVELISTNPARILGIP--YGEIKEGYRAN 329 (392)
T ss_pred CCCHHHccCCHhhCCCCCeeHHHH-HHHHHHH---------HHcCCCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccC
Confidence 8742111 11 111 1111110 11235999999999999999999994 38899999999
Q ss_pred EEEEcCCCCCCCCc-----CCcccceecccCCCCeeEEEEccEEEEECCeeee
Q 012333 402 MVVVDPFSWPMVPV-----HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449 (466)
Q Consensus 402 lvv~d~~~~~~~~~-----~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 449 (466)
|++||++.|..... .+|+.... -.++|..||++|++||+++++++
T Consensus 330 lvi~d~~~~~~~~~~sk~~~sp~~G~~---l~G~v~~ti~~G~~v~~~~~~~~ 379 (392)
T PRK00369 330 FTVIQFEDWRYSTKYSKVIETPLDGFE---LKASVYATIVQGKLAYLEGEVFP 379 (392)
T ss_pred EEEEeCCceeEccccccCCCCCCCCCE---eeeEEEEEEECCEEEEECCeEec
Confidence 99999986542211 12222211 13589999999999999998763
|
|
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=204.84 Aligned_cols=337 Identities=15% Similarity=0.156 Sum_probs=184.1
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCC-cEEeecccccccCCcccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS-QILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G-~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
+|++|+|++|++ +. ..+|+|+||||++|++.... ++.++||++| ++|+|||||+|+|+....
T Consensus 1 ~~~~i~n~~i~~--~~-----~~~v~i~~g~I~~v~~~~~~------~~~~~iD~~g~~~l~PG~ID~H~H~~~~~---- 63 (365)
T TIGR03583 1 YDLLIKNGRTVN--GT-----PVDIAIEDGKIAAVGTTITG------SAKQTIDLEGETYVSAGWIDDHTHCFPKS---- 63 (365)
T ss_pred CcEEEECcEEec--CC-----eeEEEEECCEEEEecCCCCC------CCCeEEECCCCeEEecCEEEeeeccCCCc----
Confidence 478999999995 21 23999999999999863221 2458999999 999999999999984210
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc---cCHHHHHHHHHHhCCeEEeecccccCC
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCG 174 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (466)
.....+ .. ..++.+|||++.+++. .....+.+.......+.+.......
T Consensus 64 -------------------~~~~~~-~~------~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 115 (365)
T TIGR03583 64 -------------------ALYYDE-PD------EIGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISR-- 115 (365)
T ss_pred -------------------ccccCC-Hh------HhhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehh--
Confidence 000001 00 1147889999998652 3344455544444433322211111
Q ss_pred CCC-CcccccCChHHHHHHHHHHHHHhccCCCCCe---EEEEeeccc--ccCCHHHHHHHHHHHHHcCCccceeccCCcc
Q 012333 175 EGL-PASWAVRTTDDCIQSQKELYAKHHHAADGRI---RIWFGIRQI--MNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (466)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~ 248 (466)
.|. ++...........++..+.+... ...+ +..+.+... ...++..+.+.+..+ ..+.++.+|+.+...
T Consensus 116 ~G~~~~~~~~~~~~~~~~~l~~~~~~~----~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~ 190 (365)
T TIGR03583 116 IGLVAQDELADLSNLDASAVKQAVERY----PDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPP 190 (365)
T ss_pred ccccChhhhhChHHhHHHHHHHHHHhC----cCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCcc
Confidence 122 11110011111222222233221 1112 222222111 122344454444433 578999999987654
Q ss_pred hhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-----------hhHHHHHhcCCeEEECc-cchhhccCCccH
Q 012333 249 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCP-ASAMRMLGFAPI 316 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-----------~~~~~~~~~g~~~~~~p-~~~~~~~~~~~~ 316 (466)
...... ..+ .....+.|+..-++ +.+....+.|+.+.+.- ..... ....
T Consensus 191 ~~~~i~-------------~~~---~~g~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~~~~---~~~~ 251 (365)
T TIGR03583 191 ELDEIL-------------ALM---EKGDVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTASFS---FHVA 251 (365)
T ss_pred CHHHHH-------------HHh---cCCCeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCCCch---HHHH
Confidence 332222 211 11124678766554 66777777888776541 11110 0112
Q ss_pred HHHHHcC-CcEEEccCCCCCC----CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 317 KEMLHAD-ICVSLGTDGAPSN----NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 317 ~~~~~~g-i~~~~gsD~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
..+...+ +.++.++|.+..+ +...+...++... . .+++++++++++|.|||+++|+++ .
T Consensus 252 ~~~~~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~--~-------------~g~~~~ea~~~~t~npa~~~gl~~-~ 315 (365)
T TIGR03583 252 EKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL--A-------------LGYSLEEVIEKVTKNAAEILKLTQ-K 315 (365)
T ss_pred HHHHhCCCCCcccccccccCCCccCccccHHHHHHHHH--H-------------cCCCHHHHHHHHHHHHHHHhCCCC-C
Confidence 2333445 3356666763221 1222344444322 1 149999999999999999999964 7
Q ss_pred cccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEE
Q 012333 392 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441 (466)
Q Consensus 392 G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 441 (466)
|+|++|++|||+|||.+.-. .++.|...+.+..-....+..|+++|++.
T Consensus 316 g~i~~g~~ad~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 316 GRLQEGYDADLTIFTVKAEP-KKLTDSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred CCcCCCCcccEEEEecCCCC-ceeecCCCCEEEeccccceEEEEECCEEe
Confidence 99999999999999985211 12222222221112234678899999853
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=206.81 Aligned_cols=296 Identities=18% Similarity=0.172 Sum_probs=175.3
Q ss_pred EEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChh
Q 012333 42 GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEE 121 (466)
Q Consensus 42 ~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (466)
+|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+...... ...+
T Consensus 1 ~i~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~--------------------~~~~-- 53 (338)
T cd01307 1 DVAIENGKIAAVGAALAA-----PAATQIVDAGGCYVSPGWIDLHVHVYQGGTR--------------------YGDR-- 53 (338)
T ss_pred CEEEECCEEEEccCCCCC-----CCCCeEEECCCCEEecCeEEeeecCCCCCcc--------------------cCCC--
Confidence 589999999999985321 1246899999999999999999999532110 0000
Q ss_pred HHHHHHHHHHHHHHhcCceeeeecCccC---HHHHHHHH-HHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHH
Q 012333 122 DSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAV-ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197 (466)
Q Consensus 122 ~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
..+.++..||||+++++... .....+.. ...+.+......+...+...+..+. .......+...+.+
T Consensus 54 --------~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~ 124 (338)
T cd01307 54 --------PDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELP-DPDNIDEDAVVAAA 124 (338)
T ss_pred --------HhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhhceEEEEEeeeccccccccccC-ChhHCCHHHHHHHH
Confidence 22447899999999986432 23323333 3444433221111111111111111 11111122233333
Q ss_pred HHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCe
Q 012333 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL 277 (466)
Q Consensus 198 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (466)
++..+ +-..++..+............+++.++++++.++++.+|+.+...... +.+.. +....
T Consensus 125 ~e~~~-gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~-------------~~~~~---l~~g~ 187 (338)
T cd01307 125 REYPD-VIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILD-------------EVVPL---LRRGD 187 (338)
T ss_pred HHCcC-cEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHH-------------HHHHH---hcCCC
Confidence 22221 222344444333322223334788899999999999999977543222 22221 22334
Q ss_pred eEEEeecCCh-----------hhHHHHHhcCCeEEECccchhhccCCccHHHHHHcCC-cEEEccCCCCCC----CCCCH
Q 012333 278 LSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADI-CVSLGTDGAPSN----NRMSI 341 (466)
Q Consensus 278 ~~~H~~~~~~-----------~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~gi-~~~~gsD~~~~~----~~~~~ 341 (466)
.+.|+..-+. +.+..+.++|+.+.+..... .........++++|+ +.++++|.+..+ +.+.+
T Consensus 188 ~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~--~~~~~~~~~l~~~G~~~~~lstD~~~~~~~~~p~~~l 265 (338)
T cd01307 188 VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTA--SFSFRVARAAIAAGLLPDTISSDIHGRNRTNGPVYAL 265 (338)
T ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCC--chhHHHHHHHHHCCCCCeeecCCccccCCCCCccccH
Confidence 6788877543 56788888998877552110 011134567888997 568999985422 11222
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 342 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
...++.. . ..+++++++++++|.|||+++++ +++|+|++|+.|||+|++.+
T Consensus 266 ~~~l~~l--~-------------~~gi~~ee~~~~~T~NpA~~lgl-~~~G~l~~G~~ad~~v~~~~ 316 (338)
T cd01307 266 ATTLSKL--L-------------ALGMPLEEVIEAVTANPARMLGL-AEIGTLAVGYDADLTVFDLK 316 (338)
T ss_pred HHHHHHH--H-------------HcCCCHHHHHHHHHHHHHHHcCC-CCCCccCCCCcCCEEEEeCC
Confidence 2222222 1 12599999999999999999999 56899999999999999987
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=196.93 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC-CcCC---cccceecccCCCCeeEEEEccEEE
Q 012333 366 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV-PVHD---RITSLVYCMRTENVVSVMCNGQWV 441 (466)
Q Consensus 366 ~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~-~~~~---~~~~~~~~~~~~~v~~v~v~G~~v 441 (466)
.-||++.+++.+|..+|+.+||. ++|-|++|+.|||+|+|+...... +..+ |..-..+.....++..|.|+|.+.
T Consensus 472 p~l~Le~av~rmT~~~Ae~~GL~-drGlvreG~rADl~viDp~~vr~~a~y~~~~lPa~G~~~~~vn~~~vat~v~Gvvs 550 (579)
T COG3653 472 PLLSLERAVRRMTGELAEWFGLG-DRGLVREGDRADLVVIDPHLVRDVATYTEPALPAYGILRVMVNRNVVATGVGGVVS 550 (579)
T ss_pred CcccHHHHHHHHhccHHHHhCcc-cccccccccccceEEEccccccccccccCccCCCCcceEEEEeccceeeecceeEE
Confidence 34999999999999999999995 479999999999999999844332 2222 222222222334455555569999
Q ss_pred EECCeeee-ccHHHHHHHH
Q 012333 442 MKNKKILL-LMRGRLFQLQ 459 (466)
Q Consensus 442 ~~~g~~~~-~~~~~~~~~~ 459 (466)
+++|++.+ ++.|++++.-
T Consensus 551 ~rdGe~tg~~~aGR~lR~g 569 (579)
T COG3653 551 FRDGEFTGQVKAGRYLRAG 569 (579)
T ss_pred EecCcccCcccccchhccc
Confidence 99999999 6899888754
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=193.46 Aligned_cols=329 Identities=23% Similarity=0.254 Sum_probs=189.7
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|.|++|+..|. + .++.|.|+||+|..|.+... ....-+|++|.+++|||||+|+--......
T Consensus 1 ~~lsnarivl~D~---v-~~gsv~i~DG~Ia~i~~g~s-------~~~~~~d~eGd~LLPGlIeLHtD~lE~~~~----- 64 (377)
T COG3454 1 MILSNARIVLEDR---V-VNGSVLIRDGLIADIDEGIS-------PLAAGIDGEGDYLLPGLIELHTDNLERFMT----- 64 (377)
T ss_pred CccccceEEeecc---e-eeeeEEEecceEeeeccccC-------cccccccCCCCeecccchhhcchhhhcccC-----
Confidence 4689999998653 3 34899999999999998643 235689999999999999999865321111
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC--------c---cCHHHHHHHHHHh---C-----
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--------G---QHVSEMAKAVELL---G----- 161 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~--------~---~~~~~~~~~~~~~---g----- 161 (466)
.-.++.|+... .....-.+++.+|+||+.|.- + .++..++.+.... |
T Consensus 65 -----PRPgV~wp~~a---------Ai~ahD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lrad 130 (377)
T COG3454 65 -----PRPGVRWPPIA---------AILAHDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRAD 130 (377)
T ss_pred -----CCCCCCCCchH---------HHHHhhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhc
Confidence 11223333211 122233568899999997731 1 1222333332221 1
Q ss_pred ----CeEEe-------------------ecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecc--
Q 012333 162 ----LRACL-------------------VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ-- 216 (466)
Q Consensus 162 ----~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 216 (466)
+|.-. -.+.++..+|- ..-..++.+++.++.-....+..+..+..-+.
T Consensus 131 Hr~HlRcEvs~~~~l~~~e~~~~~p~v~LiSlMDH~PGQ-------rQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~ 203 (377)
T COG3454 131 HRLHLRCEVSHPATLPLFEDLMDHPRVKLISLMDHTPGQ-------RQFANLEKYREYYQGKRGLSDEEFAEFIEERQAL 203 (377)
T ss_pred cceeeeeecCChhHHHHHHHHhcCCCeeEEEecCCCCCc-------chhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 11111 01122222211 11111222222221110000000000000000
Q ss_pred cccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhc
Q 012333 217 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 296 (466)
Q Consensus 217 ~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 296 (466)
-...+......+..+|++.|+.+..|-+.+..-.. +....+ ..+ --+..+-+..+...+.
T Consensus 204 ~~~y~~~~r~~i~~~c~~rgI~lASHDDaT~~hV~-----------------es~~~G--v~i-AEFPtT~eAA~asr~~ 263 (377)
T COG3454 204 SARYSDPNRQAIAALCRERGIALASHDDATVEHVA-----------------ESHGLG--VAI-AEFPTTVEAAKASREL 263 (377)
T ss_pred HhhcccchHHHHHHHHHHcCCceecCCcCcHHHHH-----------------HHHhcC--eeE-EeCccHHHHHHHHHHh
Confidence 00012224566778899999999999755332211 111000 111 1122345666677778
Q ss_pred CCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 012333 297 GVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAET 372 (466)
Q Consensus 297 g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 372 (466)
|..+.+-.+.-.+. .+.-..+++.+.|+..+++||+.|. +++ ..+..+... ..+++.+
T Consensus 264 Gm~VlMGAPNivrGgSHsGNvsA~ela~~glLDiLsSDY~P~----SLl~A~F~La~~~--------------~~~~lpq 325 (377)
T COG3454 264 GMQVLMGAPNIVRGGSHSGNVSARELAQHGLLDILSSDYVPA----SLLHAAFRLADLG--------------SNISLPQ 325 (377)
T ss_pred CchhhcCCCceeccCCcccchhHHHHHhCCceeeecccCCcH----HHHHHHHHHhhhh--------------cccCHHH
Confidence 98888877766655 3445678899999999999999875 333 333333221 1368999
Q ss_pred HHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 373 VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 373 al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
|+++.|.|||+.+||. ++|+|++|++||||.+..+.- -..|+.||+.||-|+
T Consensus 326 Avalvt~nPA~algl~-DRG~Ia~GlrADlv~v~~~~~-----------------vp~ir~vwr~G~rv~ 377 (377)
T COG3454 326 AVALVTKNPARALGLT-DRGRIAPGLRADLVRVRRDGG-----------------VPVIRTVWRAGKRVA 377 (377)
T ss_pred HHHHhccCHHHhcCCC-cccccccccccceEEEecCCC-----------------CceeeeeeecceecC
Confidence 9999999999999997 579999999999998877611 137999999999764
|
|
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=194.49 Aligned_cols=332 Identities=19% Similarity=0.240 Sum_probs=205.1
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhh-----hhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~-----~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
....|++|.|+.|++..+ +.++||.|+||||.+||+.+.+.. ..-++.+++|-++|++|.-|-||+|+|+
T Consensus 64 ~~~~D~VITNa~IiD~~G----i~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHf- 138 (568)
T COG0804 64 AGALDLVITNALIIDYWG----IVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHF- 138 (568)
T ss_pred cCcccEEEeeeEEEeccc----eEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEE-
Confidence 556899999999996532 467899999999999998765321 1122467899999999999999999998
Q ss_pred ccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeec---------------CccCHHHHHH
Q 012333 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA---------------GGQHVSEMAK 155 (466)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~---------------~~~~~~~~~~ 155 (466)
+.++ ....++.+|+||+.-- |..+...+.+
T Consensus 139 ---------------------------I~Pq--------qi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~ 183 (568)
T COG0804 139 ---------------------------ICPQ--------QIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQ 183 (568)
T ss_pred ---------------------------ecHH--------HHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHH
Confidence 3332 2355789999998542 2233455666
Q ss_pred HHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 012333 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (466)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (466)
+.....++.-+. +.|.. +... .+.++. .. +.+. +..|..+..++..+..++..|.++
T Consensus 184 a~d~~p~N~g~l------gKGn~------s~~~------~L~Eqi-~a--Ga~G--lKlHEDWG~TpaaI~~~L~VAD~~ 240 (568)
T COG0804 184 AADGLPMNIGFL------GKGNA------SNPA------PLAEQI-EA--GAIG--LKLHEDWGATPAAIDTCLSVADEY 240 (568)
T ss_pred hhhcCceeeEEe------ecCCC------CCch------hHHHHH-hh--ccce--eEeecccCCCHHHHHHHHhhhhhh
Confidence 665555544221 11111 1111 111111 11 2222 677888899999999999999999
Q ss_pred CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC-------ChhhHHHHHhcCCeE-EECccc-
Q 012333 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-------NHTEIGLLSRAGVKV-SHCPAS- 306 (466)
Q Consensus 236 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-------~~~~~~~~~~~g~~~-~~~p~~- 306 (466)
++.+.+|.+........ .+.+..++ .| ..|..|. .++.++.....++.. +..|+-
T Consensus 241 DvqVaiHtDTLNEsGfv-----------EdTi~A~~---gR--tIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~P 304 (568)
T COG0804 241 DVQVAIHTDTLNESGFV-----------EDTIAAIK---GR--TIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRP 304 (568)
T ss_pred ceEEEEeecccccccch-----------HhHHHHhc---Cc--eeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCC
Confidence 99999998653221111 11111111 11 1222221 123333332222221 111110
Q ss_pred --------------------------------hhhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHH-HHHHHHHHHhc
Q 012333 307 --------------------------------AMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIV-DEMYLASLINK 353 (466)
Q Consensus 307 --------------------------------~~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~-~~~~~~~~~~~ 353 (466)
..|......-.-+.|.|+.-.++||+...+.....+ ...+.+..+.+
T Consensus 305 ytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR~eTIAAEdiLhDmGafSmisSDSQAMGRvGEvi~RtwQtA~kmK~ 384 (568)
T COG0804 305 YTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESRIRPETIAAEDILHDMGAFSMISSDSQAMGRVGEVITRTWQTADKMKK 384 (568)
T ss_pred cccccHHHhhhhhhhhccCCCCCcchhhhhhhccchhhhhHHHHHhhccceEEeccchHhhhccchhhhhHHHHHHHHHH
Confidence 011122233345778899999999998765432222 33333333333
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeE
Q 012333 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVS 433 (466)
Q Consensus 354 ~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 433 (466)
.+............+-....+...|.|||-..|+++..||+++||.||||+|++--| ..++..
T Consensus 385 qrG~L~~d~~~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~PaFF-----------------GvKP~~ 447 (568)
T COG0804 385 QRGALPEDAGGNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPAFF-----------------GVKPEL 447 (568)
T ss_pred hcCCCCCCCCCCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechhhc-----------------CCCcce
Confidence 333332222223457788999999999999999999999999999999999999733 368999
Q ss_pred EEEccEEEEE
Q 012333 434 VMCNGQWVMK 443 (466)
Q Consensus 434 v~v~G~~v~~ 443 (466)
|+++|-+.+.
T Consensus 448 vlkgG~ia~a 457 (568)
T COG0804 448 VLKGGMIAWA 457 (568)
T ss_pred EEecceeeee
Confidence 9999988865
|
|
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=206.26 Aligned_cols=282 Identities=27% Similarity=0.350 Sum_probs=176.0
Q ss_pred EEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHH---
Q 012333 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEM--- 153 (466)
Q Consensus 77 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~--- 153 (466)
+|+|||||+|+|+.+....+. ...++.+.........++++||||+++++.......
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~ 60 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGL--------------------LDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIEL 60 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTS--------------------SSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHH
T ss_pred CEEcChhHHhhCcCCcCcccc--------------------CCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCcccccc
Confidence 699999999999976544331 445666777777889999999999999842221111
Q ss_pred ----HHHHHH-hCCeEEeecccccCCCCCCcccccCChHH--------HHHHHHHHHHHhccCC--CCCeEEEEeecccc
Q 012333 154 ----AKAVEL-LGLRACLVQSTMDCGEGLPASWAVRTTDD--------CIQSQKELYAKHHHAA--DGRIRIWFGIRQIM 218 (466)
Q Consensus 154 ----~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 218 (466)
.+.... ..+..... .+.....+....+....... ...+..+.+..+.... ...+...+..+...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T PF01979_consen 61 RNEIMEGLAAAPKIEPAMT-LLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPY 139 (333)
T ss_dssp HHHHHHHHHHHHHHEEEEE-EEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTT
T ss_pred ccccccccccchhhhcccc-ccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccc
Confidence 111111 11111000 00000001100000000000 0112233333332221 11445556667778
Q ss_pred cCCHHHHHHHHHHHHH-----c-CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccC-----CCCeeEEEeecCCh
Q 012333 219 NATDRLLLETRDMARE-----F-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-----QNNLLSAHTVWVNH 287 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~-----~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~H~~~~~~ 287 (466)
..+.+.+.+.++.++. . +.++.+|+.+............ +....+.+.....+ ....++.|+.++++
T Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 217 (333)
T PF01979_consen 140 TVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLY--GMSPIEALDHLGLLEEAIDDGVDLIAHGTHLSD 217 (333)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHH--SHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEH
T ss_pred cchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeee--eccchhhhccchhhhhhcccccceeeccccCCH
Confidence 8899989999999988 3 9999999988765522222222 22344444444555 55678999999999
Q ss_pred hhHHHHHhcCCeEEECccchhh--------------------c-cCCccHHHHHHc-CCcEEEccCCCCCCCCCCHHHHH
Q 012333 288 TEIGLLSRAGVKVSHCPASAMR--------------------M-LGFAPIKEMLHA-DICVSLGTDGAPSNNRMSIVDEM 345 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~--------------------~-~~~~~~~~~~~~-gi~~~~gsD~~~~~~~~~~~~~~ 345 (466)
++++++++.+..+..||..+.. . ....++..+++. |+. +|||+. . +++
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~------~--~~l 287 (333)
T PF01979_consen 218 EEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDGV------A--EEL 287 (333)
T ss_dssp HHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCTT------C--HHH
T ss_pred HHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--cccccc------c--ccc
Confidence 9999999999999999998865 1 112345566676 888 999931 1 555
Q ss_pred HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEc
Q 012333 346 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406 (466)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d 406 (466)
+..... +++++++++++|.|||+++|+++++|+|++||+|||||||
T Consensus 288 ~~~~~~---------------~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 288 KLFVRL---------------GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHHHHH---------------HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred cccccc---------------cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 554332 2899999999999999999999899999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=184.86 Aligned_cols=129 Identities=20% Similarity=0.179 Sum_probs=86.2
Q ss_pred HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCC-----------CCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG-----------TTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 320 ~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.+...++++.||+|..++.......|.+. +..+.+.....+ ..-...+++.|...+.-.+|||.+||.
T Consensus 380 i~dp~kv~lTTD~PNgGpFt~YP~v~awl-MS~k~R~~~i~~~hkwa~~rs~l~~idrE~t~~eia~~TRa~~ak~lgl~ 458 (575)
T COG1229 380 INDPWKVVLTTDSPNGGPFTRYPEVMAWL-MSEKYREEWIEGVHKWAQDRSALAGIDRELTLYELAIMTRANPAKVLGLS 458 (575)
T ss_pred ecCCCeEEEeccCCCCCCccccHHHHHHH-HhHHHHHHHHhhhhHhhhhhcccccccccccHHHHHHHHhcChhhhcccc
Confidence 45567899999998665443332222211 111111110000 011234899999999999999999999
Q ss_pred CcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccH
Q 012333 389 NDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMR 452 (466)
Q Consensus 389 ~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~ 452 (466)
+++|+|.+|.+|||.|+|-++....|..| +.++.-. =++..+|+++|++|.++|+++....
T Consensus 459 e~kGhLg~GadadIaiYdlnP~~vDps~d-ye~v~ka--f~~A~ytlK~GeIvvkdGeiv~~p~ 519 (575)
T COG1229 459 ERKGHLGVGADADIAIYDLNPEQVDPSND-YEKVEKA--FRKAAYTLKGGEIVVKDGEIVAEPE 519 (575)
T ss_pred cccCccCcCccCceEEEecChhhcCCccc-HHHHHHH--HhheeEEecCceEEEecceEEeccc
Confidence 99999999999999999999666555544 2111100 1578999999999999999876543
|
|
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=188.91 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=158.2
Q ss_pred eCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc----
Q 012333 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---- 147 (466)
Q Consensus 72 D~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~---- 147 (466)
|++|++|+|||||+|+|+.. .+.....+ .+.++.+||||+++++.
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~-------------------------~~~~~~~~------~~~a~~~GvTtvv~~p~~~~~ 49 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIES-------------------------SMLTPSEF------AKAVLPHGTTTVIADPHEIAN 49 (422)
T ss_pred CCCCCEEccCEEEccCCcCC-------------------------CCCChHHH------HHHHHCCCcEEEEeCCCCCCc
Confidence 78999999999999999932 22222222 34588999999998641
Q ss_pred ----cCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHH
Q 012333 148 ----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 223 (466)
Q Consensus 148 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 223 (466)
.....+.+..+...++.+...+.. .+..+.. .....-..++..+.++. .+--.++..+..+.. ...++
T Consensus 50 v~g~~~~~~~~~~a~~~p~~~~~~~p~~--vp~t~~e--~~g~~~~~~~i~~l~~~---~~vvglgE~md~~~v-~~~~~ 121 (422)
T cd01295 50 VAGVDGIEFMLEDAKKTPLDIFWMLPSC--VPATPFE--TSGAELTAEDIKELLEH---PEVVGLGEVMDFPGV-IEGDD 121 (422)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEeCCCc--CCCCCCC--CCCCcCCHHHHHHHhcC---CCCcEEEEeccCccc-cCCcH
Confidence 222333333334444444332211 0000000 00000012222222221 111222222222211 23556
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEEC
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~ 303 (466)
.+.+.++.+++.+.++.+|+...... .+..+...+ ....|.....++.++++ ++|+.+.++
T Consensus 122 ~l~~~i~~A~~~g~~v~~Ha~g~~~~-------------~L~a~l~aG-----i~~dH~~~~~eea~e~l-~~G~~i~i~ 182 (422)
T cd01295 122 EMLAKIQAAKKAGKPVDGHAPGLSGE-------------ELNAYMAAG-----ISTDHEAMTGEEALEKL-RLGMYVMLR 182 (422)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCHH-------------HHHHHHHcC-----CCCCcCCCcHHHHHHHH-HCCCEEEEE
Confidence 78888999999999999999653310 011111111 11237555444555554 799998887
Q ss_pred ccchhhccCCccHHHHHH--cCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 012333 304 PASAMRMLGFAPIKEMLH--ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381 (466)
Q Consensus 304 p~~~~~~~~~~~~~~~~~--~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~ 381 (466)
+.+.... ...+...+. .+.+++++||.+... ++...-......... ...+++++++++++|.||
T Consensus 183 ~g~~~~~--~~~~~~~l~~~~~~~i~l~TD~~~~~---~~~~~g~~~~v~r~a---------~~~g~s~~eal~~aT~n~ 248 (422)
T cd01295 183 EGSIAKN--LEALLPAITEKNFRRFMFCTDDVHPD---DLLSEGHLDYIVRRA---------IEAGIPPEDAIQMATINP 248 (422)
T ss_pred CcccHhh--HHHHHHhhhhccCCeEEEEcCCCCch---hhhhcchHHHHHHHH---------HHcCCCHHHHHHHHhHHH
Confidence 6543110 111122222 478999999986321 111000011111110 012599999999999999
Q ss_pred HHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 382 A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
|+++|+ +++|+|++|+.|||++++.. ...++..||++|++||+.
T Consensus 249 A~~~gl-~~~G~i~~G~~AD~vv~~~~------------------~~~~v~~v~~~G~~v~~r 292 (422)
T cd01295 249 AECYGL-HDLGAIAPGRIADIVILDDL------------------ENFNITTVLAKGIAVVER 292 (422)
T ss_pred HHHcCC-CCCcccCCCCcCCEEEECCC------------------CCCceEEEEECCeEEEEe
Confidence 999999 67899999999999999853 124899999999999874
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=184.51 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
..+.++++++++++++++++..+.......... ....+......+..|...++.+++.. .+....+
T Consensus 172 ~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~-----------~~~~G~~~~~e~~~h~L~ld~~~~~~---~~~~~k~ 237 (374)
T cd01317 172 IMVARDLELAEATGARVHFQHLSTARSLELIRK-----------AKAKGLPVTAEVTPHHLLLDDEALES---YDTNAKV 237 (374)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHH-----------HHHCCCCEEEEecHHHHhcCHHHHhc---cCCceEE
Confidence 366788999999999998844443322211111 11112222234566888888877643 4667778
Q ss_pred CccchhhccCCccHHHHHHcCCcEEEccCCCCCCCCCCH--HH---------HHHHHHHHhcccccccCCCCCCCCCCHH
Q 012333 303 CPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSI--VD---------EMYLASLINKGREVFANGTTDPAALPAE 371 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 371 (466)
+|+.... ....++.+++++|+.+++|||+.+.+...+. +. ++.....++... ....++++
T Consensus 238 ~Pplr~~-~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~~~~~~~~Gi~g~e~~l~~~~~~~~--------~~~~~~~~ 308 (374)
T cd01317 238 NPPLRSE-EDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLV--------KGGLLTLP 308 (374)
T ss_pred cCCCCCH-HHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhhCCCcHhHHHHHHHHHHHHHH--------HcCCCCHH
Confidence 8864321 3457889999999999999999987532221 11 233332222211 12248999
Q ss_pred HHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 372 TVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 372 ~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
++++++|.|||+++|+. .|+|++|++|||+++|.+
T Consensus 309 ~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~ 343 (374)
T cd01317 309 DLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPD 343 (374)
T ss_pred HHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCC
Confidence 99999999999999995 399999999999999988
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=178.16 Aligned_cols=301 Identities=17% Similarity=0.193 Sum_probs=160.5
Q ss_pred CcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----
Q 012333 75 SQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----- 149 (466)
Q Consensus 75 G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~----- 149 (466)
|++|+|||||+|+|+.. ......+ ......++++.+||||+++|+...
T Consensus 1 G~~vlPG~iD~HvH~r~------------------------pg~~~~e---d~~s~t~aA~~GGvTtv~~mPnt~P~~~~ 53 (361)
T cd01318 1 GLLILPGVIDIHVHFRE------------------------PGLTYKE---DFVSGSRAAAAGGVTTVMDMPNTKPPTTT 53 (361)
T ss_pred CCEEecCeeEeeecCCC------------------------CCCCccC---cHHHHHHHHHcCCCEEEEECCCCCCCCCc
Confidence 78999999999999832 0011111 122344668999999999987421
Q ss_pred HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecc-cccCCHHHHHHH
Q 012333 150 VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ-IMNATDRLLLET 228 (466)
Q Consensus 150 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~ 228 (466)
...+........-.......... +.. .. ++..+. .+.+...++.+..... ....+...+.++
T Consensus 54 ~~~~~~~~~~a~~~~~vd~~~~~---~~~--------~~--~~l~~~----~~~~~~g~k~f~~~~~~~~~~~~~~l~~~ 116 (361)
T cd01318 54 AEALYEKLRLAAAKSVVDYGLYF---GVT--------GS--EDLEEL----DKAPPAGYKIFMGDSTGDLLDDEETLERI 116 (361)
T ss_pred HHHHHHHHHHhccCceeEEEEEE---eec--------Ch--hhHHHH----HHhhCcEEEEEEecCCCCcCCCHHHHHHH
Confidence 22222222222111111111110 010 00 111121 1122234555443211 112466777777
Q ss_pred HHHHHHcCCccceeccCCcchhHHHHhh--c---CCCCc-------hHHHHhhhccCCCCeeEEEeecCChhhHHHHHhc
Q 012333 229 RDMAREFKTGIHMHVAEIPYENQVVMDT--R---KVDHG-------TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 296 (466)
Q Consensus 229 ~~~a~~~~~~v~~H~~~~~~~~~~~~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 296 (466)
++.+. .++.+|+.+........... . ..+.. ....+......+.+..+.|... .+.++.+++.
T Consensus 117 ~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~--~~~~~~i~~~ 191 (361)
T cd01318 117 FAEGS---VLVTFHAEDEDRLRENRKELKGESAHPRIRDAEAAAVATARALKLARRHGARLHICHVST--PEELKLIKKA 191 (361)
T ss_pred HHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHh
Confidence 77664 78999997643311111100 0 00000 1122333333455666666654 4566676665
Q ss_pred --CCeEEECccchhhc-----------cCCcc---------HHHHHHcCCcEEEccCCCCCCCC------------CCHH
Q 012333 297 --GVKVSHCPASAMRM-----------LGFAP---------IKEMLHADICVSLGTDGAPSNNR------------MSIV 342 (466)
Q Consensus 297 --g~~~~~~p~~~~~~-----------~~~~~---------~~~~~~~gi~~~~gsD~~~~~~~------------~~~~ 342 (466)
++...+||++.... .-.+| +++.++.|...+++|||.|.... +.-.
T Consensus 192 k~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~~~~~a~~G~~g~ 271 (361)
T cd01318 192 KPGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGV 271 (361)
T ss_pred CCCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccCChhhCCCCCccH
Confidence 78888999853210 11133 34558999999999999876311 1111
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------
Q 012333 343 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP------- 414 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~------- 414 (466)
+.+.. .+.. .....+++++++++++|.|||+++|+.+ +|+|++|++|||+|+|++ .|+..+
T Consensus 272 e~~l~-~~~~---------~v~~~~l~l~~a~~~~t~nPA~~lgl~~-~G~i~~G~~ADlvv~d~~~~~~v~~~~~~s~~ 340 (361)
T cd01318 272 ETALP-LMLT---------LVNKGILSLSRVVRLTSHNPARIFGIKN-KGRIAEGYDADLTVVDLKEERTIRAEEFHSKA 340 (361)
T ss_pred HHHHH-HHHH---------HHHcCCCCHHHHHHHHhHHHHHHhCCCC-CCccCCCCcCCEEEEeCCCCEEECHHHccccC
Confidence 11111 1000 0012359999999999999999999954 799999999999999988 333211
Q ss_pred cCCcccceecccCCCCeeEEEEcc
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNG 438 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G 438 (466)
..+|+....+ .++|..||++|
T Consensus 341 ~~tp~~G~~l---~G~v~~t~~~G 361 (361)
T cd01318 341 GWTPFEGFEV---TGFPVMTIVRG 361 (361)
T ss_pred CCCCCCCCEE---eeEEEEEEeCc
Confidence 1122222211 25777888776
|
This group contains the archeal members of the DHOase family. |
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-21 Score=184.72 Aligned_cols=177 Identities=26% Similarity=0.228 Sum_probs=125.3
Q ss_pred EeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHH
Q 012333 212 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291 (466)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~ 291 (466)
.........+++.+.++++.+.+.|+++.+|+...... ...++.+.....+..+.|+..+++++++
T Consensus 214 ~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~--------------~~~l~a~~~~~~~~~i~h~~~~~~~~~~ 279 (404)
T PF07969_consen 214 VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAI--------------DEALDAIEAARARGRIEHAELIDPDDIE 279 (404)
T ss_dssp EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHH--------------HHHHHHHHHHTCCHEEEEHCBCCHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchH--------------HhHHHHHHhhcccceeeccccCCHHHHH
Confidence 34455566777779999999999999999999553322 2233333333232379999999999999
Q ss_pred HHHhcCCeEEECccch--------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhccccc
Q 012333 292 LLSRAGVKVSHCPASA--------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREV 357 (466)
Q Consensus 292 ~~~~~g~~~~~~p~~~--------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (466)
++++.++.+.++|... .+.....+++.++++|+++++|||++.. ..+++..+..+.........
T Consensus 280 ~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~~--~~~P~~~~~~~~~~~~~~~~ 357 (404)
T PF07969_consen 280 RMAELGVTASVQPHFLFSWGGEWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPVS--PPNPFRGIWAAVTRQMAGER 357 (404)
T ss_dssp HHHHHTTEEEECCTHHHHETEETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTTS--SCCHHHHHHHHHHHHHCHHT
T ss_pred HHHHhCCccccChhHhhhccchhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCccc--ccCcchhhhhhhcccccccc
Confidence 9999999999999211 1224568999999999999999999752 35678777766554443211
Q ss_pred ccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEE
Q 012333 358 FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 404 (466)
Q Consensus 358 ~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv 404 (466)
.......++.+|++|||+++|.+||+.+|+++++|+|++||.|||||
T Consensus 358 ~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 358 SGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred ccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 11111122569999999999999999999999889999999999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-20 Score=154.09 Aligned_cols=355 Identities=16% Similarity=0.152 Sum_probs=187.9
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
+-+.|++|+-. +.. ...+++|++|||..=.+ +--+....+++.||+.|.++.|||||.....+.
T Consensus 14 lQFtNCrilR~---g~l-~~edlWVR~GRIldpe~---vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGf--------- 77 (407)
T KOG3892|consen 14 LQFTNCRILRG---GKL-LREDLWVRGGRILDPEK---VFFEERTVADERIDCGGRILAPGFIDLQINGGF--------- 77 (407)
T ss_pred eeeeeeEEeeC---Cce-eehheeEeCCeecCccc---ccceeccchhheeccCCeeecCceEEEEecCcc---------
Confidence 55789999952 233 34599999999974322 110011136689999999999999999988632
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeec----CccCHHHHHHHH--HHhCCeEEeecccccCC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA----GGQHVSEMAKAV--ELLGLRACLVQSTMDCG 174 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~----~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~ 174 (466)
..+-....++.........++++++|+|+++.. +...+..+.... ...|.+..-.......+
T Consensus 78 ------------GvDFS~dte~~~eGvAlVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~HlEG 145 (407)
T KOG3892|consen 78 ------------GVDFSQDTEDVGEGVALVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHLEG 145 (407)
T ss_pred ------------ccccccchhhhhhhHHHHHHHHHhcCCCcCCCccccCCchhhhhhccccccccCCCCccceeeeeccC
Confidence 112222333333333446688999999998762 222333322211 12233333334444566
Q ss_pred CCCCcccccCChHHHHHHHH----HHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCc---
Q 012333 175 EGLPASWAVRTTDDCIQSQK----ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP--- 247 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~--- 247 (466)
++.+...+....+.++.... +.+..... .-+++++..-.+.. .- ..+.++.....|..+..-.....
T Consensus 146 PFIs~~KrG~HPE~~i~s~~~~~~~~l~~tYG-sleni~IvTlAPEl-~~----~~evi~~lv~~gitVslGHS~A~L~~ 219 (407)
T KOG3892|consen 146 PFISREKRGAHPEAHIRSFEADAFQDLLATYG-SLENIRIVTLAPEL-GG----AQEVIRALVARGITVSLGHSVADLRA 219 (407)
T ss_pred CccChhhcCCCHHHHHhccCccHHHHHHHHhC-CccceEEEEecccc-cC----cHHHHHHHHhcceEEeeccchhccCc
Confidence 66666666555665554221 11211111 12455553322221 11 23445555556666655322211
Q ss_pred chhHHHHh-------------hcCCCCchHHHHhhhccCCCC----eeEEEeecCChhhHHHHHhc---CCeEEECccch
Q 012333 248 YENQVVMD-------------TRKVDHGTVTFLDKIEFLQNN----LLSAHTVWVNHTEIGLLSRA---GVKVSHCPASA 307 (466)
Q Consensus 248 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~----~~~~H~~~~~~~~~~~~~~~---g~~~~~~p~~~ 307 (466)
.+.+.+.. .+-.+.+.+..+..-.+...+ -+++.+.+..+..++.+.+. |...+...-.+
T Consensus 220 gE~AV~sGat~ITHLFNAMlpfHHRDPGlvGLLtSd~lp~gr~iyyGiIsDG~HThpaALRIAyrthpqGLvLVTDAI~A 299 (407)
T KOG3892|consen 220 GEDAVWSGATFITHLFNAMLPFHHRDPGLVGLLTSDRLPAGRCIYYGIISDGTHTHPAALRIAYRTHPQGLVLVTDAIPA 299 (407)
T ss_pred HHHHHhccchHHHHHHHhccccccCCCceeEEeecCCCCCCCeEEEEEecCCccCChhHhhhhhhcCCCceEEEecchhh
Confidence 11111110 111111111111111111111 26778888888888877655 33333322222
Q ss_pred hhc-cCCccHHHH---HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHH
Q 012333 308 MRM-LGFAPIKEM---LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK 383 (466)
Q Consensus 308 ~~~-~~~~~~~~~---~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~ 383 (466)
.-+ .+...+.+. .+.+-...-||..... +--.|-...+-.. .+.+.|.+-|++++|..||+
T Consensus 300 LGl~~GvH~lGqq~v~Vkgl~A~~aGT~Tl~G-SiApMd~CvRhf~--------------kATgCs~e~AleaAtlhPAq 364 (407)
T KOG3892|consen 300 LGLGNGVHTLGQQEVEVKGLTAYVAGTKTLSG-SIAPMDVCVRHFL--------------KATGCSMESALEAATLHPAQ 364 (407)
T ss_pred cccccccccccceeEEEcceEEEeeccccccc-cccCcHHHHHHHH--------------HhcCCcHHHHHhhhccChHH
Confidence 211 111111110 0000111113322111 1112233333221 12368999999999999999
Q ss_pred HcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 384 SVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 384 ~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
.||+++.+|.|..|.+||||++|.+ ..|..||+.|+.|++.
T Consensus 365 lLg~ek~KGTLDfG~dADFVllDd~--------------------l~V~aT~isG~~V~~a 405 (407)
T KOG3892|consen 365 LLGLEKSKGTLDFGADADFVLLDDS--------------------LHVQATYISGELVWQA 405 (407)
T ss_pred hhccccccccccccccCceEEEccc--------------------eEEEEEEEccEEEEec
Confidence 9999999999999999999999998 6999999999999874
|
|
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=171.34 Aligned_cols=262 Identities=20% Similarity=0.226 Sum_probs=151.2
Q ss_pred cEEeecccccccCCcccccccccCCCCchHhhhhccccccCCCC-hhHHHHHHHHHHHHHHhcCceeeeecCcc-----C
Q 012333 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMT-EEDSYISTLLCGIELIHSGVTCFAEAGGQ-----H 149 (466)
Q Consensus 76 ~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~ 149 (466)
++|+||+||+|+|+.. .... ..+ ......++++.+||||+++|+.. .
T Consensus 1 ~~vlPG~iD~HvH~r~------------------------pg~~~~~e---~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~ 53 (337)
T cd01302 1 LLVLPGFIDIHVHLRD------------------------PGGTTYKE---DFESGSRAAAAGGVTTVIDMPNTGPPPID 53 (337)
T ss_pred CEecCCeeEeeeccCC------------------------CCCCCchh---HHHHHHHHHHhCCCcEEEECCCCCCCCCc
Confidence 5899999999999832 1111 111 22334577899999999998742 2
Q ss_pred HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccc--ccCCHHHHHH
Q 012333 150 VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI--MNATDRLLLE 227 (466)
Q Consensus 150 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~ 227 (466)
...+.........+.......... .... ..+.+ +.++.+.+...++.+...... ...+.+.+.+
T Consensus 54 ~~~~~~~~~~a~~~~~~d~~~~~~---~~~~-------~~~~e----l~~l~~~Gv~g~K~f~~~~~~~~~~~~~~~l~~ 119 (337)
T cd01302 54 LPAIELKIKLAEESSYVDFSFHAG---IGPG-------DVTDE----LKKLFDAGINSLKVFMNYYFGELFDVDDGTLMR 119 (337)
T ss_pred HHHHHHHHHHhCcCcEeeEEEEEe---ccCc-------cCHHH----HHHHHHcCCcEEEEEEeccCCCccccCHHHHHH
Confidence 233333333322222221111110 1110 01122 222333444556665533221 1457788889
Q ss_pred HHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECc
Q 012333 228 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCP 304 (466)
Q Consensus 228 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p 304 (466)
.++.+++.+.++.+|+.. .. ......+.+..+.|...- +-+.++.+++.|+. +.+||
T Consensus 120 ~~~~~~~~g~~v~~H~Er-----------------~~---~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~p 179 (337)
T cd01302 120 TFLEIASRGGPVMVHAER-----------------AA---QLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCP 179 (337)
T ss_pred HHHHHHhcCCeEEEeHHH-----------------HH---HHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcCh
Confidence 999999999999999861 11 112223344556665532 12445555666655 45677
Q ss_pred cchhh------c--------------cCCccHHHHHHcCCcEEEccCCCCCCCCC-----CHHH--------HHHHHHHH
Q 012333 305 ASAMR------M--------------LGFAPIKEMLHADICVSLGTDGAPSNNRM-----SIVD--------EMYLASLI 351 (466)
Q Consensus 305 ~~~~~------~--------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~-----~~~~--------~~~~~~~~ 351 (466)
+.... . .....++..+..|+..+++|||.|..... +++. +.....+.
T Consensus 180 h~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~~~~ 259 (337)
T cd01302 180 HHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILL 259 (337)
T ss_pred hhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccCCCcccCCCCcccHHHHHHHHH
Confidence 64210 0 11234566788999999999998864210 1111 11111112
Q ss_pred hcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 352 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 352 ~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
+... ..+++++++++++|.|||+++|+.+ +|+|++|++|||+|||.+
T Consensus 260 ~~~~---------~~~i~~~~~~~~~s~~pA~~~gl~~-~g~i~~G~~ADlvi~d~~ 306 (337)
T cd01302 260 TEGV---------KRGLSLETLVEILSENPARIFGLYP-KGTIAVGYDADLVIVDPK 306 (337)
T ss_pred HHHH---------hcCCCHHHHHHHHHHHHHHHcCCCC-CCccccCCcCCEEEEeCC
Confidence 1110 1258999999999999999999954 699999999999999998
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=163.43 Aligned_cols=271 Identities=19% Similarity=0.192 Sum_probs=177.7
Q ss_pred cccccccCCccccccccc-----CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeec-------Ccc
Q 012333 81 GFVNTHVHTSQQLAKGIA-----DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA-------GGQ 148 (466)
Q Consensus 81 G~ID~H~H~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~-------~~~ 148 (466)
||||+|+|++.++..+.. ....+.+-+. .+......++.++.+.++...+..++.+|+|.++.. +-.
T Consensus 21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~-~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~ 99 (329)
T PRK06886 21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWD-LVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDR 99 (329)
T ss_pred CCccccccccccccCCCccccccCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCcccc
Confidence 899999999987654431 1222333322 222335567888889999999999999999998653 222
Q ss_pred CHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccc----ccCCHHH
Q 012333 149 HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI----MNATDRL 224 (466)
Q Consensus 149 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~ 224 (466)
.+..+.+..++..-++.+....+ ...|+. .... .+.+++..+. .+.+. +.+.. ...+.+.
T Consensus 100 ~~~a~~~~r~~~~~~idlq~vaf-Pq~g~~----~~~~-------~~l~~~al~~-advvG---GiP~~~~~~~~~~~e~ 163 (329)
T PRK06886 100 AIIAAHKAREVYKHDIILKFANQ-TLKGVI----EPTA-------KKWFDIGSEM-VDMIG---GLPYRDELDYGRGLEA 163 (329)
T ss_pred HHHHHHHHHHHhcCcceEEEEec-Chhhcc----CccH-------HHHHHHHHHh-CCEEe---CccCCcCCCCCCCHHH
Confidence 34444444444333332222111 111221 1111 1222222222 12222 22222 2456788
Q ss_pred HHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhh-------HHHHHhcC
Q 012333 225 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE-------IGLLSRAG 297 (466)
Q Consensus 225 l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~-------~~~~~~~g 297 (466)
+..++++|+++|+++.+|+.+........... ........++. .+++++|+..++..+ ++++++.|
T Consensus 164 l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~------l~~~~~~~Gl~-grV~~sH~~~L~~~~~~~~~~~i~~La~ag 236 (329)
T PRK06886 164 MDILLDTAKSLGKMVHVHVDQFNTPKEKETEQ------LCDKTIEHGMQ-GRVVAIHGISIGAHSKEYRYRLYQKMREAD 236 (329)
T ss_pred HHHHHHHHHHcCCCeEEeECCCCchhHHHHHH------HHHHHHHcCCC-CCEEEEEeccccCcChhhHHHHHHHHHHcC
Confidence 99999999999999999999876554332221 11112244554 479999999999765 99999999
Q ss_pred CeEEECccchhh----------ccCCccHHHHHHcCCcEEEccCCCCC----CCCCCHHHHHHHHHHHhcccccccCCCC
Q 012333 298 VKVSHCPASAMR----------MLGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTT 363 (466)
Q Consensus 298 ~~~~~~p~~~~~----------~~~~~~~~~~~~~gi~~~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (466)
+.+++||.+++. ..+.+|+.++++.||++++|||+... ....++++.++.+....+.
T Consensus 237 i~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l~~~~~~~--------- 307 (329)
T PRK06886 237 MMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTDNICDYMVPLCEGDMWQELSLLAAGCRF--------- 307 (329)
T ss_pred CeEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHHHHHHcCC---------
Confidence 999999998753 25678999999999999999998631 2357999999987655432
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 364 DPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 364 ~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.++.++++++|.++|+.+|++
T Consensus 308 ----~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 308 ----YDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred ----CCHHHHHHHHhhhHHHHhCCC
Confidence 468999999999999999984
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=168.88 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCe
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~ 299 (466)
.+.+.+.++++.|+++|+++.+|+............ .+. .+..| ..+.+.++.+++.|+.
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~~--------------~Gv----~~~E~--p~t~e~a~~a~~~G~~ 219 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDTPEHVAEAHE--------------LGV----VISEF--PTTLEAAKAARELGLQ 219 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCChHHHHHHHH--------------CCC----eeccC--CCCHHHHHHHHHCCCE
Confidence 346789999999999999999999765332221111 111 11233 3578899999999999
Q ss_pred EEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 300 VSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 300 ~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
++++++..++. .+..+++.+++.|+.++++||+.+. +++...... .. ..++++++++++
T Consensus 220 vv~gapn~lrg~s~~g~~~~~~ll~~Gv~~al~SD~~p~----sll~~~~~l--a~------------~~gl~l~eAl~~ 281 (325)
T cd01306 220 TLMGAPNVVRGGSHSGNVSARELAAHGLLDILSSDYVPA----SLLHAAFRL--AD------------LGGWSLPEAVAL 281 (325)
T ss_pred EEecCcccccCccccccHhHHHHHHCCCeEEEEcCCCcH----hHHHHHHHH--HH------------HcCCCHHHHHHH
Confidence 99887665543 3456789999999999999999653 233221111 11 125999999999
Q ss_pred HhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEcc
Q 012333 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438 (466)
Q Consensus 377 ~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 438 (466)
+|.|||+++|++ ++|+|++|+.||||+++.+. ....+..||++|
T Consensus 282 aT~nPA~~lGl~-d~G~I~~G~~ADlvvvd~~~-----------------~~p~v~~v~~~G 325 (325)
T cd01306 282 VSANPARAVGLT-DRGSIAPGKRADLILVDDMD-----------------GVPVVRTVWRGG 325 (325)
T ss_pred HhHHHHHHcCCC-CCCCcCCCCCCCEEEEeCCC-----------------CCCccceEEeCc
Confidence 999999999996 57999999999999999971 113788899887
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-17 Score=149.39 Aligned_cols=259 Identities=24% Similarity=0.339 Sum_probs=173.0
Q ss_pred ccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC--------HHHH
Q 012333 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEM 153 (466)
Q Consensus 82 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--------~~~~ 153 (466)
|||+|+|+.....++....... .| ....++.+.+........+++++||||+.+++... ...+
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~ 71 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLEL-KE--------AEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAV 71 (275)
T ss_pred CcccchhhHHHHHccCCCcccc-cc--------ccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHH
Confidence 7999999987655543221111 11 34566666677777788999999999999976432 3555
Q ss_pred HHHHHHh-CCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccccc---CCHHHHHHHH
Q 012333 154 AKAVELL-GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMN---ATDRLLLETR 229 (466)
Q Consensus 154 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~ 229 (466)
.+..... |++............ .. .....+...+.+......+... +....... .+.+.+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~i~~~~~~~~~g----i~~~~~~~~~~~~~~~~~~~~ 139 (275)
T cd01292 72 AEAARASAGIRVVLGLGIPGVPA----AV----DEDAEALLLELLRRGLELGAVG----LKLAGPYTATGLSDESLRRVL 139 (275)
T ss_pred HHHHHHhcCeeeEEeccCCCCcc----cc----chhHHHHHHHHHHHHHhcCCee----EeeCCCCCCCCCCcHHHHHHH
Confidence 6666666 777765544432111 00 1122222333343333211222 23333322 3778999999
Q ss_pred HHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhh
Q 012333 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309 (466)
Q Consensus 230 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 309 (466)
+.++++++++.+|+.+.... .......++.... +.+.++.|+...+++.++.+++.|+.+.+||.++..
T Consensus 140 ~~a~~~~~~i~~H~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 208 (275)
T cd01292 140 EEARKLGLPVVIHAGELPDP----------TRALEDLVALLRL-GGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYL 208 (275)
T ss_pred HHHHHcCCeEEEeeCCcccC----------ccCHHHHHHHHhc-CCCEEEECCccCCHHHHHHHHHcCCeEEECCccccc
Confidence 99999999999999775432 0012223333322 567899999999999999999999999999998765
Q ss_pred c----cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHH
Q 012333 310 M----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKS 384 (466)
Q Consensus 310 ~----~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~ 384 (466)
. ....+++.+++.|+++++|||+++.....+++..++.+....+. +++.+++++++|.|||++
T Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 209 LGRDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLRL------------GLSLEEALRLATINPARA 275 (275)
T ss_pred ccCCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCHHHHHHHHHHHHhc------------CCCHHHHHHHHhccccCC
Confidence 3 55678999999999999999998653445788887776544321 279999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=161.18 Aligned_cols=77 Identities=39% Similarity=0.532 Sum_probs=58.6
Q ss_pred CccHHHHHHcCCcEEEccCCCCCC--CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCc
Q 012333 313 FAPIKEMLHADICVSLGTDGAPSN--NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDND 390 (466)
Q Consensus 313 ~~~~~~~~~~gi~~~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~ 390 (466)
...++.+++.|++++++||+.+.. ....++..+...... .++|++++++++|+|||++||++++
T Consensus 226 ~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~--------------~gl~~~~al~~~T~~pA~~lgl~~~ 291 (304)
T PF13147_consen 226 RAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVR--------------AGLSPEEALRAATSNPARILGLDDD 291 (304)
T ss_dssp HHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHH--------------TSSTHHHHHHHHTHHHHHHTTBTTT
T ss_pred hHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhh--------------cCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 456778999999999999998642 223344443332221 1599999999999999999999888
Q ss_pred ccccccCCccCEE
Q 012333 391 IGSLEAGKKADMV 403 (466)
Q Consensus 391 ~G~i~~G~~ADlv 403 (466)
+|+|++||+||||
T Consensus 292 ~G~i~~G~~ADlv 304 (304)
T PF13147_consen 292 KGSIAPGKDADLV 304 (304)
T ss_dssp SSSTSTTSB-EEE
T ss_pred CccCCCCCCCCcC
Confidence 9999999999997
|
... |
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=142.01 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecccCCCCeeEEEEcc
Q 012333 367 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYCMRTENVVSVMCNG 438 (466)
Q Consensus 367 ~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~~~~~~v~~v~v~G 438 (466)
.+++.++++.+|.|||+++|+.. + .+||||+|++ .|+... -.+|+....+ .++|..||++|
T Consensus 260 ~i~l~~l~~~~s~nPAk~~gl~~-------~-~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l---~G~v~~ti~rG 328 (344)
T cd01316 260 RLTIEDIVDRLHTNPKRIFNLPP-------Q-SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKV---KGKVQRVVLRG 328 (344)
T ss_pred CCCHHHHHHHHHHhHHHHhCCCC-------C-CCCEEEEeCCCcEEEChhhccccCCCCCCCCCEE---eeEEEEEEECC
Confidence 49999999999999999999854 2 3479999987 333221 1223322211 35899999999
Q ss_pred EEEEECCeee
Q 012333 439 QWVMKNKKIL 448 (466)
Q Consensus 439 ~~v~~~g~~~ 448 (466)
++||++|++.
T Consensus 329 ~~v~~~g~~~ 338 (344)
T cd01316 329 ETAFIDGEIV 338 (344)
T ss_pred EEEEECCEEc
Confidence 9999999875
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-15 Score=139.93 Aligned_cols=247 Identities=18% Similarity=0.166 Sum_probs=164.5
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeec--C----c--cC--------HHHHHHHHHHh
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA--G----G--QH--------VSEMAKAVELL 160 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~--~----~--~~--------~~~~~~~~~~~ 160 (466)
...+.++.+|+..+.|..+...++++.+......+.++++.|||++--. + . .. ...+.++..+.
T Consensus 45 ~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~ 124 (325)
T cd01320 45 AYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEF 124 (325)
T ss_pred cccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456677889988888888888888888888889999999999965211 1 0 01 12334444556
Q ss_pred CCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccc
Q 012333 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 240 (466)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 240 (466)
|++..+....... .+ .....+..+...++.. +..+.+.+.... ...+.+.+..+++.|++.|+++.
T Consensus 125 gi~~~l~~~~~~~---~~--------~~~~~~~~~~~~~~~~--~~vvg~~l~~~~-~~~~~~~~~~~~~~A~~~g~~v~ 190 (325)
T cd01320 125 GIKARLILCGLRH---LS--------PESAQETLELALKYRD--KGVVGFDLAGDE-VGFPPEKFVRAFQRAREAGLRLT 190 (325)
T ss_pred CCeEEEEEEecCC---CC--------HHHHHHHHHHHHhccC--CCEEEeecCCCC-CCCCHHHHHHHHHHHHHCCCceE
Confidence 8887664433211 01 1122222333333322 122333232222 23477889999999999999999
Q ss_pred eeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeEEECccchhhcc-----CC
Q 012333 241 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRML-----GF 313 (466)
Q Consensus 241 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~~-----~~ 313 (466)
+|+.+...... ....++.++ . ..+.||.+++ ++.++++++.|+.+++||.+++... ..
T Consensus 191 ~H~~E~~~~~~-----------~~~a~~~~g---~-~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~~~~~~~ 255 (325)
T cd01320 191 AHAGEAGGPES-----------VRDALDLLG---A-ERIGHGIRAIEDPELVKRLAERNIPLEVCPTSNVQTGAVKSLAE 255 (325)
T ss_pred EeCCCCCCHHH-----------HHHHHHHcC---C-cccchhhccCccHHHHHHHHHcCCeEEECCCccccccccCCccc
Confidence 99987532211 111222222 1 2378999994 6689999999999999999988652 25
Q ss_pred ccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 314 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 314 ~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.|++.+++.|+++++|||.++... .+++.+++.+.... ++++.+ +..+|.|+++...+.
T Consensus 256 ~p~~~l~~~Gv~v~lgTD~~~~~~-~~~~~e~~~~~~~~--------------~l~~~e-l~~~~~na~~~~f~~ 314 (325)
T cd01320 256 HPLRELLDAGVKVTINTDDPTVFG-TYLTDEYELLAEAF--------------GLTEEE-LKKLARNAVEASFLS 314 (325)
T ss_pred ChHHHHHHCCCEEEECCCCCcccC-CCHHHHHHHHHHHc--------------CCCHHH-HHHHHHHHHHHhCCC
Confidence 799999999999999999875433 57888887764321 489999 556889999998764
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-15 Score=139.22 Aligned_cols=249 Identities=17% Similarity=0.157 Sum_probs=168.0
Q ss_pred ccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceee---eecCc-----cC--------HHHHHHHHH
Q 012333 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF---AEAGG-----QH--------VSEMAKAVE 158 (466)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv---~~~~~-----~~--------~~~~~~~~~ 158 (466)
++.....++.+|+..+.|+.....++++.+......+.++++.|||++ .++.. .. ...+.++..
T Consensus 51 r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~ 130 (340)
T PRK09358 51 RAAYDFRDLQSFLDKYDAGVAVLQTEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEA 130 (340)
T ss_pred cccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 444556678899999888888888888888888889999999999975 22210 00 123344455
Q ss_pred HhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCC
Q 012333 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKT 237 (466)
Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~~~~a~~~~~ 237 (466)
..|++..+..+.... . ..........+.++.+. ....+. +++.+. ...+++.+.++++.|++.|+
T Consensus 131 ~~gi~~~li~~~~r~---~-------~~~~~~~~~~~~~~~~~--~~~vvg--~~l~g~e~~~~~~~~~~~~~~A~~~g~ 196 (340)
T PRK09358 131 EFGISVRLILCFMRH---F-------GEEAAARELEALAARYR--DDGVVG--FDLAGDELGFPPSKFARAFDRARDAGL 196 (340)
T ss_pred hcCceEEEEEEecCC---C-------CHHHHHHHHHHHHHHhc--CCcEEE--EeCCCcCCCCCHHHHHHHHHHHHHCCC
Confidence 568887666544321 1 11122222233333322 223333 333322 34567889999999999999
Q ss_pred ccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeEEECccchhhcc----
Q 012333 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRML---- 311 (466)
Q Consensus 238 ~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~~---- 311 (466)
++++|+.+...... ....+..++ . ..+.||.+++ ++.++++++.|+.+.+||.+++...
T Consensus 197 ~~~~H~~E~~~~~~-----------~~~al~~lg---~-~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~~ 261 (340)
T PRK09358 197 RLTAHAGEAGGPES-----------IWEALDELG---A-ERIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVPS 261 (340)
T ss_pred CeEEcCCCCCchhH-----------HHHHHHHcC---C-cccchhhhhccCHHHHHHHHHcCCeEEECCCccccccccCC
Confidence 99999987543211 111222222 1 2378999995 5679999999999999999998762
Q ss_pred -CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 312 -GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 312 -~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
+..|+++++++|+++++|||.+... ..+++.+++.+.... +++++++ ..++.|+.+...++
T Consensus 262 ~~~~pi~~l~~~Gv~v~lgTD~~~~~-~~~l~~e~~~~~~~~--------------~l~~~el-~~l~~nai~~sf~~ 323 (340)
T PRK09358 262 LAEHPLKTLLDAGVRVTINTDDPLVF-GTTLTEEYEALAEAF--------------GLSDEDL-AQLARNALEAAFLS 323 (340)
T ss_pred cccChHHHHHHCCCEEEECCCCCccc-CCCHHHHHHHHHHHh--------------CCCHHHH-HHHHHHHHHHHCCC
Confidence 4589999999999999999987554 358999988765421 4999995 56678888887664
|
|
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-15 Score=139.19 Aligned_cols=242 Identities=18% Similarity=0.206 Sum_probs=165.2
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-c----------------CHHHHHHHHHHhCC
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-Q----------------HVSEMAKAVELLGL 162 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~----------------~~~~~~~~~~~~g~ 162 (466)
..++.+|+....|+.+...+.++.+......+.++++.||| ..++-. + ....+.++..+.|+
T Consensus 47 ~~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~~~e~~~~Gv~-y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi 125 (324)
T TIGR01430 47 FRDLQDFLAKYDFGVEVLRTEDDFKRLAYEYVEKAAKDGVV-YAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGI 125 (324)
T ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45688899988888888888888888888889999999995 444310 1 11233445556788
Q ss_pred eEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCCccce
Q 012333 163 RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGIHM 241 (466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~~~~a~~~~~~v~~ 241 (466)
+..+..+..+.. ..+...+..+....+.. ...+. ++..+. ...+.+.+.++++.|++.|+++.+
T Consensus 126 ~~~li~~~~r~~-----------~~~~~~~~~~~~~~~~~--~~vvg--~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~ 190 (324)
T TIGR01430 126 KSRLILCGMRHK-----------QPEAAEETLELAKPYKE--QTIVG--FGLAGDERGGPPPDFVRAFAIARELGLHLTV 190 (324)
T ss_pred eEEEEEEEeCCC-----------CHHHHHHHHHHHHhhcc--CcEEE--ecCCCCCCCCCHHHHHHHHHHHHHCCCCeEE
Confidence 875555444311 01122222222222221 12233 333322 345578899999999999999999
Q ss_pred eccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC--ChhhHHHHHhcCCeEEECccchhhcc-----CCc
Q 012333 242 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRML-----GFA 314 (466)
Q Consensus 242 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~g~~~~~~p~~~~~~~-----~~~ 314 (466)
|+.+...... ....+..++. ..+.||.++ +++.++.+++.|+.+++||.+++... ...
T Consensus 191 Ha~E~~~~~~-----------~~~~~~~~g~----~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~ 255 (324)
T TIGR01430 191 HAGELGGPES-----------VREALDDLGA----TRIGHGVRALEDPELLKRLAQENITLEVCPTSNVALGVVKSLAEH 255 (324)
T ss_pred ecCCCCChHH-----------HHHHHHHcCc----hhcchhhhhccCHHHHHHHHHcCceEEECCcccccccccCCcccC
Confidence 9997632111 1111222221 247999999 56789999999999999999998763 267
Q ss_pred cHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 315 ~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
|++.++++|+++++|||.+..... +++.+++.+.... ++++.+ +..+|.|+++.+.++
T Consensus 256 pi~~l~~~Gv~v~igTD~~~~~~~-~l~~e~~~a~~~~--------------~l~~~e-l~~~~~na~~~~f~~ 313 (324)
T TIGR01430 256 PLRRFLEAGVKVTLNSDDPAYFGS-YLTEEYEIAAKHA--------------GLTEEE-LKQLARNALEGSFLS 313 (324)
T ss_pred hHHHHHHCCCEEEECCCCCcccCC-CHHHHHHHHHHHc--------------CCCHHH-HHHHHHHHHHHhCCC
Confidence 999999999999999998765433 8888888775421 499999 789999999998875
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-15 Score=104.10 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=34.3
Q ss_pred EEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 43 v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
|+|+||||++|++.... +.++.++||++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~----~~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSEL----PADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCT----TSTCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCC----CCCCCEEEECCCCEEeCCeEeeeeccc
Confidence 68999999999654432 224667899999999999999999974
|
... |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=122.78 Aligned_cols=161 Identities=9% Similarity=0.027 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHcCCccceeccCCcchhHH-HHhhcCCCCchHHHHhhhcc-CCCCeeEEEeecCChhhHHHHHhc--
Q 012333 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQV-VMDTRKVDHGTVTFLDKIEF-LQNNLLSAHTVWVNHTEIGLLSRA-- 296 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~~~~~~~~~~~~~-- 296 (466)
+.+.+.++++.+.+.|.++.+|+.+....... ..+. ............ .+.+.++.|.. +.+.++.+++.
T Consensus 111 d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~----~~~~~~~~lA~~~p~~~v~i~Hvs--t~~~~~~i~~ak~ 184 (335)
T cd01294 111 DLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREA----KFIPVLEPLAQRFPKLKIVLEHIT--TADAVEYVKSCNE 184 (335)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHH----HHHHHHHHHHHHcCCCeEEEeccc--HHHHHHHHHhCCC
Confidence 45788999999999999999999764331100 0000 001112222221 24556667764 35556665543
Q ss_pred CCeEEECccchh-------h---c---cCCc---------cHHHHHHcCCcE-EEccCCCCCCCC----------CCHHH
Q 012333 297 GVKVSHCPASAM-------R---M---LGFA---------PIKEMLHADICV-SLGTDGAPSNNR----------MSIVD 343 (466)
Q Consensus 297 g~~~~~~p~~~~-------~---~---~~~~---------~~~~~~~~gi~~-~~gsD~~~~~~~----------~~~~~ 343 (466)
.+.+.+||+.-. . . .-.+ .+++.+..|... +++|||.|+... +..++
T Consensus 185 ~vt~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~ 264 (335)
T cd01294 185 NVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAP 264 (335)
T ss_pred CcEEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHH
Confidence 477778887432 1 0 0012 344667889888 599999887421 11122
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCC
Q 012333 344 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 398 (466)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~ 398 (466)
.+....+ .. .. .++|++++++.+|.||||++||.+++|+|.+|.
T Consensus 265 ~~l~~~~-~~---------~~-~~l~l~~~v~~~s~nPA~i~gl~~~kg~i~~~~ 308 (335)
T cd01294 265 IALPYLA-EV---------FE-EHNALDKLEAFASDNGPNFYGLPPNKKTITLVK 308 (335)
T ss_pred HHHHHHH-HH---------Hh-ccCCHHHHHHHHHhHHHHHhCCCCCCCeEEEEe
Confidence 1111111 10 01 149999999999999999999977767666664
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-09 Score=97.55 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHcC-CccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh--hhHHHHHhcC
Q 012333 221 TDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRAG 297 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~g 297 (466)
+...+...++.+++.| +++.+|+.+.... ....+.+..+ ...+.||.++.. +.++.+++.+
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~--------------~~v~~~~~~~--~~RIgHg~~~~~~p~~~~~l~~~~ 214 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNR--------------EELLQALLLL--PDRIGHGIFLLKHPELIYLVKLRN 214 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCCh--------------HHHHHHHHhc--cceeeceEecCCCHHHHHHHHHcC
Confidence 5677888999999999 9999999986321 1222222222 345999999987 9999999999
Q ss_pred CeEEECccchhhccC-----CccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 012333 298 VKVSHCPASAMRMLG-----FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 372 (466)
Q Consensus 298 ~~~~~~p~~~~~~~~-----~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 372 (466)
+.+.+||.+++.... ..|++.+++.|++++++||.+..... ++..+++.+.... +++.++
T Consensus 215 i~ie~CP~SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~-~l~~E~~~~~~~~--------------~l~~~~ 279 (305)
T cd00443 215 IPIEVCPTSNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGT-SLSEEYSLAAKTF--------------GLTFED 279 (305)
T ss_pred CEEEECcchhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCC-ChHHHHHHHHHHc--------------CcCHHH
Confidence 999999999987633 37899999999999999999865444 7888877664332 388888
Q ss_pred HHHHHhHHHHHHcCC
Q 012333 373 VLRMATINGAKSVLW 387 (466)
Q Consensus 373 al~~~T~~~A~~lgl 387 (466)
..+++ .|+-+...+
T Consensus 280 l~~l~-~nsi~~sf~ 293 (305)
T cd00443 280 LCELN-RNSVLSSFA 293 (305)
T ss_pred HHHHH-HHHHHHhcC
Confidence 77655 566555554
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-08 Score=90.78 Aligned_cols=240 Identities=10% Similarity=0.015 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCCeEEeecccccCCCCCCcccc-cCChHHHHHHHHHHH
Q 012333 123 SYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA-VRTTDDCIQSQKELY 197 (466)
Q Consensus 123 ~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 197 (466)
.+..+...+..+.++|+|++++.+.. ......+..+..|++.+...++..... .+.+. ........+...+.+
T Consensus 30 ~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~~--~~~~~~~~~~~~l~~~~~~~l 107 (293)
T cd00530 30 DVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAF--YPEWVRLRSVEELTDMLIREI 107 (293)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCcc--ChHHHhhCCHHHHHHHHHHHH
Confidence 34566667788999999999998753 355666777778887766555432110 01111 111111111111112
Q ss_pred HHhccCCC---CCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCC
Q 012333 198 AKHHHAAD---GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ 274 (466)
Q Consensus 198 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (466)
....+... ..++-............+.++..+++|+++++++++|+.+.... .......+...+...
T Consensus 108 ~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~----------~~~~l~~l~~~g~~~ 177 (293)
T cd00530 108 EEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGLTM----------GLEQLRILEEEGVDP 177 (293)
T ss_pred HhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccc----------cHHHHHHHHHcCCCh
Confidence 11111100 11211111111222334467889999999999999998753111 011334444444444
Q ss_pred CCeeEEEee-cCChhhHHHHHhcCCeEEECccchhh---c----cCCccHHHHHHcCC--cEEEccCCCCCCCC------
Q 012333 275 NNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASAMR---M----LGFAPIKEMLHADI--CVSLGTDGAPSNNR------ 338 (466)
Q Consensus 275 ~~~~~~H~~-~~~~~~~~~~~~~g~~~~~~p~~~~~---~----~~~~~~~~~~~~gi--~~~~gsD~~~~~~~------ 338 (466)
.+.++.|+. .-+.+.++.+.+.|+.+.++...... . .....++++++.+. .+.++||.+...+.
T Consensus 178 ~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~ 257 (293)
T cd00530 178 SKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGG 257 (293)
T ss_pred hheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCC
Confidence 456789998 45678899999999988876433211 0 11234677788876 67999998632110
Q ss_pred CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 339 MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
..+..-+....... ...+++.+++.++.+.||+++|
T Consensus 258 ~~~~~~~~~~~~~~-----------~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 258 HGYDYILTRFIPRL-----------RERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred CChHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHCHHHhC
Confidence 00111111111110 1125899999999999999875
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=88.80 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC--ChhhHHHHHhcCCeE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKV 300 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~g~~~ 300 (466)
....++++.|++.|+++.+|+.+....... ....+.+..++ . ..|.||..+ +++.++.+++.++.+
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~--------~~v~~ai~~l~---~-~RIGHG~~~~~d~~l~~~l~~~~I~l 273 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNL--------NTLYSAIQVLK---V-KRIGHGIRVAESQELIDMVKEKDILL 273 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcc--------hhHHHHHHHhC---C-CccccccccCCCHHHHHHHHHcCCeE
Confidence 456788899999999999999874210000 00111222221 1 348899998 478899999999999
Q ss_pred EECccchhhcc-----CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 012333 301 SHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375 (466)
Q Consensus 301 ~~~p~~~~~~~-----~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 375 (466)
.+||.++.... ...|++.+++.|++++++||.+.... .++..++..+... .+++.++..+
T Consensus 274 EvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~-t~l~~Ey~~~~~~--------------~gls~~~l~~ 338 (362)
T PTZ00124 274 EVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFL-TNINDDYEELYTH--------------LNFTLADFMK 338 (362)
T ss_pred EECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccC-CChhHHHHHHHHH--------------cCCCHHHHHH
Confidence 99999998662 23689999999999999999986532 3566665544221 2599988887
Q ss_pred HHhHHHHHHcCC
Q 012333 376 MATINGAKSVLW 387 (466)
Q Consensus 376 ~~T~~~A~~lgl 387 (466)
+ +.|+.+...+
T Consensus 339 l-~~nai~asF~ 349 (362)
T PTZ00124 339 M-NEWALEKSFL 349 (362)
T ss_pred H-HHHHHHHhcC
Confidence 6 4566665554
|
|
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-08 Score=92.69 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchH-HHHh-hh-ccCCCCeeEEEeecCChhhHHHHHhc-
Q 012333 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV-TFLD-KI-EFLQNNLLSAHTVWVNHTEIGLLSRA- 296 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~H~~~~~~~~~~~~~~~- 296 (466)
+++.+.++++.+.++|.++.+|+........... . ..... ..+. .. ...+.+..+.|.. +.+.++.+++.
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~---~-e~~~~~~~l~~lA~~~pg~~lhI~Hls--t~~~~e~i~~a~ 189 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFD---R-EAVFIDRVLEPLRRRFPKLKIVFEHIT--TKDAVDYVREAN 189 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCccccccc---c-hHHHHHHHHHHHHHhcCCCcEEEEecC--cHHHHHHHHhcC
Confidence 6778899999999999999999976332110000 0 00001 1111 12 1224566677764 45556665543
Q ss_pred -CCeEEECccchhhc----------------------cCCccHHHHHHcCCcE-EEccCCCCCCCC-------C-CHHHH
Q 012333 297 -GVKVSHCPASAMRM----------------------LGFAPIKEMLHADICV-SLGTDGAPSNNR-------M-SIVDE 344 (466)
Q Consensus 297 -g~~~~~~p~~~~~~----------------------~~~~~~~~~~~~gi~~-~~gsD~~~~~~~-------~-~~~~~ 344 (466)
++.+.+||..-..- .....+++.+..|... +++|||.|+... . .++..
T Consensus 190 ~~it~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~ 269 (345)
T PRK05451 190 DNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSA 269 (345)
T ss_pred CCEEEEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhH
Confidence 45566888743210 0112455678889898 799999987421 1 12221
Q ss_pred H-HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccC
Q 012333 345 M-YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAG 397 (466)
Q Consensus 345 ~-~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G 397 (466)
. ....+.. .+ .. +.+++++++++|+|||+++||.+++|+|.+|
T Consensus 270 ~~g~~~~~~----~~-----~~-~~~l~~~v~~~s~nPAkifGl~~~KG~i~~~ 313 (345)
T PRK05451 270 PAALELYAE----VF-----EE-AGALDKLEAFASLNGPDFYGLPRNTDTITLV 313 (345)
T ss_pred HHHHHHHHH----HH-----Hc-CCCHHHHHHHHhHHHHHHhCCCCCCCeEEEE
Confidence 1 0011111 00 01 2489999999999999999999999999888
|
|
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=88.98 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhh--hccCCCCeeEEEeecCChhhHHHHHhc--
Q 012333 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDK--IEFLQNNLLSAHTVWVNHTEIGLLSRA-- 296 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~-- 296 (466)
++..+.++++.+++.|.++.+|+.+.......... -.......+.. ....+.+..+.|... .+.++.+++.
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~---e~~a~~~~i~~lA~~~~~~~~~i~H~st--~~~~~~i~~a~~ 187 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDR---EARFIESVLEPLRQRFPALKVVLEHITT--KDAIDYVEDGNN 187 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccc---hhhhhHHHHHHHHHHccCCeEEEEecCc--HHHHHHHHHcCC
Confidence 44788999999999999999999764211110000 00001111111 122344555556542 3444444332
Q ss_pred CCeEEECccchhhc-----c-----------------CCccHHHHHHcCCcE-EEccCCCCCCCC----------CCHHH
Q 012333 297 GVKVSHCPASAMRM-----L-----------------GFAPIKEMLHADICV-SLGTDGAPSNNR----------MSIVD 343 (466)
Q Consensus 297 g~~~~~~p~~~~~~-----~-----------------~~~~~~~~~~~gi~~-~~gsD~~~~~~~----------~~~~~ 343 (466)
.+...+||+.-..- . ....+++.+..|... +++|||.|+... +.-.+
T Consensus 188 ~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~~~~~~G~~g~e 267 (341)
T TIGR00856 188 RLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKESSCGCAGCFSAP 267 (341)
T ss_pred CEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCCCCCCCCcccHH
Confidence 35666787643210 0 112445678889998 699999987421 11111
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEc
Q 012333 344 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 406 (466)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d 406 (466)
.+ ...+.. .. ..++|++++++++|.||||++|| ++ | +|||+|++
T Consensus 268 ~~-l~~~~~---------~~-~~~~~l~~~v~~~s~nPAk~~gl-~~-~------dAdi~~~~ 311 (341)
T TIGR00856 268 TA-LPSYAE---------VF-EEMNALENLEAFCSDNGPQFYGL-PV-N------STKIELVK 311 (341)
T ss_pred HH-HHHHHH---------HH-hcCCCHHHHHHHHhHhHHHHhCC-CC-C------CceEEEEe
Confidence 11 111111 00 11489999999999999999999 43 4 89999995
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-07 Score=87.52 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHcC--CccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHh
Q 012333 220 ATDRLLLETRDMAREFK--TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSR 295 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~ 295 (466)
.+.+.+..+++.|++.| +++.+|+.+...... .....+.+.+ .++ ...|.||..+. ++.++.+++
T Consensus 176 ~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~---------~~~~~v~~al-~lg-~~RIGHG~~~~~dp~ll~~l~~ 244 (345)
T cd01321 176 RPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGT---------ETDENLVDAL-LLN-TKRIGHGFALPKHPLLMDLVKK 244 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCC---------CChhHHHHHH-HhC-CCcCccccccCcCHHHHHHHHH
Confidence 45677788899999999 999999988542100 0011122222 122 13488999985 788999999
Q ss_pred cCCeEEECccchhhcc-----CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 296 AGVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 296 ~g~~~~~~p~~~~~~~-----~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
.++.+.+||.++.... ...|++.++++|++++++||.+......++..+.+.+.... .+.+++.
T Consensus 245 ~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~-----------g~~~l~~ 313 (345)
T cd01321 245 KNIAIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGL-----------APADAGL 313 (345)
T ss_pred cCCeEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHh-----------ccCCCCH
Confidence 9999999999998652 34689999999999999999986432224556655443211 1113888
Q ss_pred HHHHHHHhHHHHHHcCCC
Q 012333 371 ETVLRMATINGAKSVLWD 388 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl~ 388 (466)
++.. .++.|+.+...++
T Consensus 314 ~~l~-~l~~nsi~~sF~~ 330 (345)
T cd01321 314 RGLK-QLAENSIRYSALS 330 (345)
T ss_pred HHHH-HHHHHHHHHHCCC
Confidence 8866 4456777766653
|
|
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-07 Score=84.36 Aligned_cols=137 Identities=11% Similarity=0.050 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+...++.|+++++++.+|+...... ..+.+...+ ....++.|+..-+.+.+..+.+.|+.+.+
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~ 172 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDAEED-------------VLDILREEK--PKVGGVLHCFTGDAELAKKLLDLGFYISI 172 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCccHH-------------HHHHHHhcC--CCCCEEEEccCCCHHHHHHHHHCCCeEee
Confidence 667888999999999999999653221 233333332 12356778876667888888889999888
Q ss_pred CccchhhccCCccHHHHHHcC--CcEEEccCCCCCCC-----CCCHHHHHHH-HHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN-----RMSIVDEMYL-ASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
...... .....++++++.. -++.++||.+...+ ..+....+.. ...+... .+++.+++.
T Consensus 173 ~~~~~~--~~~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~-----------~g~~~~~~~ 239 (252)
T TIGR00010 173 SGIVTF--KNAKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEI-----------KGMDVEELA 239 (252)
T ss_pred ceeEec--CCcHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHHH-----------hCcCHHHHH
Confidence 864321 1112355566553 36899999863110 0011111111 1111111 159999999
Q ss_pred HHHhHHHHHHcCC
Q 012333 375 RMATINGAKSVLW 387 (466)
Q Consensus 375 ~~~T~~~A~~lgl 387 (466)
++++.||++++++
T Consensus 240 ~~~~~N~~~~~~~ 252 (252)
T TIGR00010 240 QITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-07 Score=81.74 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
.+.++..+++|+++++++.+|+...... ..+.+..++ ....++.|+..-+.+.++.+.+.|+.+.
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~~~~~-------------~~~l~~~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~ 171 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRDAHED-------------VLEILKEYG--PPKRGVFHCFSGSAEEAKELLDLGFYIS 171 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhcC--CCCCEEEEccCCCHHHHHHHHHcCCEEE
Confidence 4567889999999999999998754211 223333332 1445677877656678888888999988
Q ss_pred ECccchhhccCCccHHHHHHcC--CcEEEccCCCCCCCCC------C--HHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 012333 302 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNNRM------S--IVDEMYLASLINKGREVFANGTTDPAALPAE 371 (466)
Q Consensus 302 ~~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 371 (466)
+.+..... ....++.+++.. -++.++||++...... . .+..+...... ..+++.+
T Consensus 172 ~~~~~~~~--~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~-------------~~gl~~e 236 (251)
T cd01310 172 ISGIVTFK--NANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAE-------------LKGISVE 236 (251)
T ss_pred eeeeeccC--CCHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHH-------------HHCcCHH
Confidence 88764221 111245555554 3689999986421110 0 11111111100 1259999
Q ss_pred HHHHHHhHHHHHHcC
Q 012333 372 TVLRMATINGAKSVL 386 (466)
Q Consensus 372 ~al~~~T~~~A~~lg 386 (466)
++.+.++.|++++||
T Consensus 237 ~~~~~~~~N~~~ll~ 251 (251)
T cd01310 237 EVAEVTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.6e-07 Score=83.27 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchH-HHH--hhhccCCCCeeEEEeecCChhhHHHHHh--c
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV-TFL--DKIEFLQNNLLSAHTVWVNHTEIGLLSR--A 296 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~--~ 296 (466)
.+.+.++++.+++.|.++.+|+............ ....+ ..+ ......+.+.++.|... .+.++.+++ .
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~----E~~~i~r~l~~~la~~~g~kI~i~HiSt--~~~ve~v~~ak~ 208 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDR----EKVFIDTILAPLVQKLPQLKIVMEHITT--MDAVEFVESCGD 208 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCccccccccc----HHHHHHHHHHHHHHhccCCeEEEEecCh--HHHHHHHHhccC
Confidence 4788899999999999999999874321110000 00001 122 12234455566666543 344444433 2
Q ss_pred -CCeEEECccchhhc----------------------cCCccHHHHHHcCCc-EEEccCCCCCCCCC--------CHHHH
Q 012333 297 -GVKVSHCPASAMRM----------------------LGFAPIKEMLHADIC-VSLGTDGAPSNNRM--------SIVDE 344 (466)
Q Consensus 297 -g~~~~~~p~~~~~~----------------------~~~~~~~~~~~~gi~-~~~gsD~~~~~~~~--------~~~~~ 344 (466)
.+...+||+.-..- .....+++.+..|.. .++||||.|+.... ..+..
T Consensus 209 ~~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~ 288 (364)
T PLN02599 209 GNVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIYSA 288 (364)
T ss_pred CCEEEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCCCCCCCcccH
Confidence 46777888744210 011245567788985 89999999864210 11110
Q ss_pred -HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 345 -MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
.....+... ....+ +++++++.+|.|||+++||..++|+
T Consensus 289 ~~~l~~l~~~---------~~~~g-~l~~l~~~~S~npA~~~gL~~~kg~ 328 (364)
T PLN02599 289 PVALSLYAKA---------FEEAG-ALDKLEAFTSFNGPDFYGLPRNTST 328 (364)
T ss_pred HHHHHHHHHH---------HHhcC-CHHHHHHHHhHHHHHHhCCCCCCCe
Confidence 000000000 01113 8899999999999999999445665
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-06 Score=74.51 Aligned_cols=239 Identities=13% Similarity=0.065 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHH
Q 012333 124 YISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199 (466)
Q Consensus 124 ~~~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (466)
+......+..+.+.|+.|++|+. +.+...+.+..++.|+++..+..++... ..|........++..+...+.+.+
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-~~p~~~~~~~~e~la~~~i~ei~~ 111 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDA-FFPEHVATRSVQELAQEMVDEIEQ 111 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-cCCHHHhcCCHHHHHHHHHHHHHH
Confidence 44555566778889999999964 3567778888999999998888877543 244444444444444444444444
Q ss_pred hccC---CCCCeEEEEeecc--cccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCC
Q 012333 200 HHHA---ADGRIRIWFGIRQ--IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ 274 (466)
Q Consensus 200 ~~~~---~~~~i~~~~~~~~--~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (466)
..+. ..+.++- ++... ......+.++.+...+++.|.++.+|...... +....+.+...+.-.
T Consensus 112 Gi~gt~ikaGvIGe-iG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~-----------g~e~l~il~e~Gvd~ 179 (292)
T PRK09875 112 GIDGTELKAGIIAE-IGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTM-----------GLEQLALLQAHGVDL 179 (292)
T ss_pred hhccCCCcccEEEE-EecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccc-----------hHHHHHHHHHcCcCc
Confidence 3321 1122211 11111 12222345667777888999999999644211 111344555555555
Q ss_pred CCeeEEEeecC-ChhhHHHHHhcCCeEEECccchh--hc--cCCccHHHHHHcC--CcEEEccCCCCCCC-----CCCHH
Q 012333 275 NNLLSAHTVWV-NHTEIGLLSRAGVKVSHCPASAM--RM--LGFAPIKEMLHAD--ICVSLGTDGAPSNN-----RMSIV 342 (466)
Q Consensus 275 ~~~~~~H~~~~-~~~~~~~~~~~g~~~~~~p~~~~--~~--~~~~~~~~~~~~g--i~~~~gsD~~~~~~-----~~~~~ 342 (466)
.+.++.|.... +.+.+..+++.|+.+.++-.... .. .....+..+.+.| -++.+++|...... ...+.
T Consensus 180 ~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~ 259 (292)
T PRK09875 180 SRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYD 259 (292)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChh
Confidence 68899998543 55778889999999887521110 00 1234566778887 46888999753311 00011
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 343 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
.-+... +.+ ..+.|++.+++=+++..||+++|+
T Consensus 260 ~i~~~~--ip~---------L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 260 YLLTTF--IPQ---------LRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHH--HHH---------HHHcCCCHHHHHHHHHHCHHHHhC
Confidence 111111 111 012369999999999999999874
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-06 Score=79.79 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC--ChhhHHHHHhc
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRA 296 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~ 296 (466)
...++....+.+.++++|+.+.+|+.+...... ..+.+...+ . ..|.||..+ .++.++++++.
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~-----------i~~al~~~~---~-~rI~HGi~~~~d~~L~~~l~~~ 245 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPES-----------IRDALDLLG---A-ERIGHGIRAIEDPELLYRLAER 245 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcHH-----------HHHHHHHhc---h-hhhccccccccCHHHHHHHHHh
Confidence 345677889999999999999999987543222 112222222 1 137898875 35778999999
Q ss_pred CCeEEECccchhhcc-----CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 012333 297 GVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAE 371 (466)
Q Consensus 297 g~~~~~~p~~~~~~~-----~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 371 (466)
++.+.+||.++.... ...|++++++.|++++++||.+..... .+..+...+.... +++..
T Consensus 246 qI~levCP~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~~-~l~~Ey~~aa~~~--------------~l~~~ 310 (345)
T COG1816 246 QIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFGT-PLIEEYLVAAQIY--------------GLSRE 310 (345)
T ss_pred CCeeEECCcchhhcccccchhhCcHHHHHHcCCceEEcCCChhhcCC-chHHHHHHHHHHh--------------CCCHH
Confidence 999999999996552 235899999999999999999876432 4555554442221 37777
Q ss_pred HHHHHHhHHHHHHcCCC
Q 012333 372 TVLRMATINGAKSVLWD 388 (466)
Q Consensus 372 ~al~~~T~~~A~~lgl~ 388 (466)
++-+. +.|+=+..+++
T Consensus 311 dl~~~-arnav~~af~~ 326 (345)
T COG1816 311 DLCEL-ARNAVEAAFIS 326 (345)
T ss_pred HHHHH-HHHHHHHccCC
Confidence 76643 44555555543
|
|
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=81.88 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeEE
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVS 301 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~~ 301 (466)
....+++.+++.|+++.+|+.|..... ...+.+..++. ..|.||..+. ++.++.+++.++.+.
T Consensus 181 ~~~~~~~~a~~~gl~~t~HaGE~~~~~--------------~~~~ai~~l~~-~RIgHG~~~~~~p~l~~~~~~~~I~iE 245 (331)
T PF00962_consen 181 KFAPAFRKAREAGLKLTVHAGETGGPE--------------HIRDAILLLGA-DRIGHGVRLIKDPELLELLAERQIPIE 245 (331)
T ss_dssp GHHHHHHHHHHTT-EEEEEESSSSTHH--------------HHHHHHHTST--SEEEE-GGGGGSHHHHHHHHHTT-EEE
T ss_pred HHHHHHhhhcccceeecceecccCCcc--------------cccchhhhccc-eeecchhhhhhhhHHHHHHHHhCCCee
Confidence 377888889999999999998865322 22222222332 3599999875 566899999999999
Q ss_pred ECccchhhcc-----CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 302 HCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 302 ~~p~~~~~~~-----~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
+||.+|.... ...|++.+++.|++++++||.+... ..++..+...+.... ++|.++..+
T Consensus 246 vcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~-~~~l~~ey~~~~~~~--------------~l~~~~l~~- 309 (331)
T PF00962_consen 246 VCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVF-GTTLSDEYYLAAEAF--------------GLSLADLKQ- 309 (331)
T ss_dssp E-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHH-T-SHHHHHHHHHHHH--------------T--HHHHHH-
T ss_pred eCCCcCcccceeeecchhHHHHHHHcCCceeccCCCcccc-CCCcHHHHHHHHHHc--------------CCCHHHHHH-
Confidence 9999998662 2469999999999999999987432 124566655443221 388888654
Q ss_pred HhHHHHHHcCCC
Q 012333 377 ATINGAKSVLWD 388 (466)
Q Consensus 377 ~T~~~A~~lgl~ 388 (466)
+..|+.+...++
T Consensus 310 l~~nsi~~sf~~ 321 (331)
T PF00962_consen 310 LARNSIEASFLS 321 (331)
T ss_dssp HHHHHHHCSSS-
T ss_pred HHHHHHHHHcCC
Confidence 455777766654
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-05 Score=69.64 Aligned_cols=137 Identities=11% Similarity=0.060 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+++.+++|+++++++.+|+-..... ..+.+...+. ....+.|+..-+.++++.+.+.|..+.+
T Consensus 114 ~vf~~ql~lA~~~~~Pv~iH~r~a~~~-------------~~~il~~~~~--~~~~i~H~fsG~~~~a~~~l~~G~~iS~ 178 (258)
T PRK11449 114 WLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDL--PRTGVVHGFSGSLQQAERFVQLGYKIGV 178 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCccHH-------------HHHHHHhcCC--CCCeEEEcCCCCHHHHHHHHHCCCEEEe
Confidence 457888999999999999999763322 2333333321 1245899998899999999999999887
Q ss_pred CccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCCC------CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNR------MSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.+..... ....++++++. . -.+.+.||+|...+. -.+.........+... .+++.+++.
T Consensus 179 ~g~it~~--~~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l-----------~~~~~~el~ 245 (258)
T PRK11449 179 GGTITYP--RASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCEL-----------RPEPADEIA 245 (258)
T ss_pred Ccccccc--CcHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-----------HCcCHHHHH
Confidence 7654321 11224444433 1 147889999732110 0011111111111111 148899999
Q ss_pred HHHhHHHHHHcCC
Q 012333 375 RMATINGAKSVLW 387 (466)
Q Consensus 375 ~~~T~~~A~~lgl 387 (466)
+..+.|..+++|+
T Consensus 246 ~~~~~N~~~lf~~ 258 (258)
T PRK11449 246 EVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999998874
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-05 Score=70.11 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+++-+++|+++++|+.+|+-+.... ..+++..... ....+.||..-+.+.++.+.+.|..+.+
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A~~d-------------~~~iL~~~~~--~~~gi~HcFsGs~e~a~~~~d~G~yisi 176 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDAHED-------------TLEILKEEGA--PVGGVLHCFSGSAEEARKLLDLGFYISI 176 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccHHH-------------HHHHHHhcCC--CCCEEEEccCCCHHHHHHHHHcCeEEEE
Confidence 456788999999999999999764322 2333333332 3456899999999999999999988887
Q ss_pred CccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCC------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.+...... ...++++.+. . -.+.+=||+|-..+ .-.+.........+...+ +++++++.
T Consensus 177 sG~itfk~--a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk-----------~~~~eeva 243 (256)
T COG0084 177 SGIVTFKN--AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELK-----------GISAEEVA 243 (256)
T ss_pred CceeecCC--cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHHh-----------CCCHHHHH
Confidence 76554432 1122333222 1 13556799873211 111222222222222211 59999999
Q ss_pred HHHhHHHHHHcCC
Q 012333 375 RMATINGAKSVLW 387 (466)
Q Consensus 375 ~~~T~~~A~~lgl 387 (466)
+..|.|.-+++++
T Consensus 244 ~~t~~N~~~lf~~ 256 (256)
T COG0084 244 EITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988874
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-05 Score=69.36 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.++..+++|+++++++.+|+-....+ ..+.+...+.. ....+.|+..-+.+.++.+.+.|..+.+
T Consensus 111 ~vf~~ql~lA~e~~~Pv~iH~r~a~~~-------------~l~iL~~~~~~-~~~~v~H~fsG~~~~a~~~~~~G~~is~ 176 (265)
T PRK10812 111 ESFRHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVT-DCGGVLHCFTEDRETAGKLLDLGFYISF 176 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhhcCC-CCCEEEEeecCCHHHHHHHHHCCCEEEE
Confidence 456788999999999999998653321 23334332221 1134689998788999999999999887
Q ss_pred CccchhhccCCccHHHHHHcC--CcEEEccCCCCCCC------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.....+ .....++.+++.. -.+.+.||+|-..+ .-.+..-...+..+.+. .+++.+++.
T Consensus 177 ~g~~t~--~~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l-----------~g~~~eei~ 243 (265)
T PRK10812 177 SGIVTF--RNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVL-----------KGVSVEELA 243 (265)
T ss_pred Ceeeec--CccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHH-----------hCCCHHHHH
Confidence 743221 1223456666654 36888999863211 00111111111122111 159999999
Q ss_pred HHHhHHHHHHcCCC
Q 012333 375 RMATINGAKSVLWD 388 (466)
Q Consensus 375 ~~~T~~~A~~lgl~ 388 (466)
+..+.|+.+++++.
T Consensus 244 ~~~~~N~~~lf~~~ 257 (265)
T PRK10812 244 QVTTDNFARLFHID 257 (265)
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999999984
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-05 Score=71.39 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHH
Q 012333 123 SYISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198 (466)
Q Consensus 123 ~~~~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (466)
........++.+...|+.|++|+. +.+...+.+..+..|+++..+..++... ..+........++..+...+-+.
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~-~~p~~~~~~s~e~la~~~i~Ei~ 114 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEP-FYPEWVREASVEELADLFIREIE 114 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGG-CSCHHHHTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccc-cCChhhhcCCHHHHHHHHHHHHH
Confidence 345555677778899999999964 3567788889999999998888777533 23332233333332222222222
Q ss_pred Hhcc---CCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCC
Q 012333 199 KHHH---AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN 275 (466)
Q Consensus 199 ~~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (466)
.-.+ ...+.++........-......++.+....++.|+++++|+........ ...+++.+.+.--.
T Consensus 115 ~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~----------e~~~il~e~Gv~~~ 184 (308)
T PF02126_consen 115 EGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGL----------EQLDILEEEGVDPS 184 (308)
T ss_dssp T-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHH----------HHHHHHHHTT--GG
T ss_pred hcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHH----------HHHHHHHHcCCChh
Confidence 2111 1123444432222222222345667777778889999999965431111 13456666666667
Q ss_pred CeeEEEeecCCh-hhHHHHHhcCCeEEECcc------ch------hhc--cCCccHHHHHHcCC--cEEEccCCCCC--C
Q 012333 276 NLLSAHTVWVNH-TEIGLLSRAGVKVSHCPA------SA------MRM--LGFAPIKEMLHADI--CVSLGTDGAPS--N 336 (466)
Q Consensus 276 ~~~~~H~~~~~~-~~~~~~~~~g~~~~~~p~------~~------~~~--~~~~~~~~~~~~gi--~~~~gsD~~~~--~ 336 (466)
+.++.|.-...+ +.+..+++.|+.+.+.-. .. +.. .....+..++++|- ++.+|.|.... .
T Consensus 185 rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~ 264 (308)
T PF02126_consen 185 RVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRL 264 (308)
T ss_dssp GEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGS
T ss_pred HeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccc
Confidence 889999875433 456788889998876322 00 000 12235677888885 68899886431 0
Q ss_pred C-------CCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 337 N-------RMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 337 ~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
. .+..+ ..+.. .+. +.|+|.++.=+++..||+++|
T Consensus 265 ~~~gg~g~~~~~i~~~fiP-~L~-------------~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 265 YRYGGGGYGYIYILTRFIP-RLK-------------ERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp SSCCHHHHTTTHHHHTHHH-HHH-------------HTTS-HHHHHHHHTHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHH-HHH-------------HcCCCHHHHHHHHHHCHHHHc
Confidence 0 11111 11111 111 136999999999999999987
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=61.43 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=89.3
Q ss_pred EeecccccCCH---HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChh
Q 012333 212 FGIRQIMNATD---RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT 288 (466)
Q Consensus 212 ~~~~~~~~~~~---~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~ 288 (466)
++--+....++ +.+++.+++|+++++++.+|.-........ ....+.+...++-....++.|+ +.+
T Consensus 100 iGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t--------~~ildi~~~~~l~~~lvvIDH~---N~e 168 (254)
T COG1099 100 IGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKKEAT--------SKILDILIESGLKPSLVVIDHV---NEE 168 (254)
T ss_pred eeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcchhHH--------HHHHHHHHHcCCChhheehhcc---cHH
Confidence 33344444554 446788899999999999998543322111 1134455555555555667776 567
Q ss_pred hHHHHHhcCCe--EEECccchhhccCCccHHHHHHcC-CcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCC
Q 012333 289 EIGLLSRAGVK--VSHCPASAMRMLGFAPIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 365 (466)
Q Consensus 289 ~~~~~~~~g~~--~~~~p~~~~~~~~~~~~~~~~~~g-i~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (466)
.++...+.+.. .+++|.. +.....+.-..+.| -++.+.||..... .+++.--+.+..+..
T Consensus 169 tv~~vld~e~~vGlTvqPgK---lt~~eAveIV~ey~~~r~ilnSD~~s~~--sd~lavprtal~m~~------------ 231 (254)
T COG1099 169 TVDEVLDEEFYVGLTVQPGK---LTVEEAVEIVREYGAERIILNSDAGSAA--SDPLAVPRTALEMEE------------ 231 (254)
T ss_pred HHHHHHhccceEEEEecCCc---CCHHHHHHHHHHhCcceEEEeccccccc--ccchhhhHHHHHHHH------------
Confidence 78877777655 4566622 12222333444556 5788899976432 244444444433322
Q ss_pred CCCCHHHHHHHHhHHHHHHcCC
Q 012333 366 AALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 366 ~~ls~~~al~~~T~~~A~~lgl 387 (466)
.|++.++.-+.+-.|+-+++|+
T Consensus 232 ~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 232 RGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred hcCCHHHHHHHHHHHHHHHhCc
Confidence 2588888888888888888876
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00017 Score=65.03 Aligned_cols=139 Identities=13% Similarity=-0.020 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+++.+++|++++.|+.+|+-+.... ..+++.... ......+.|+..-+.+.++.+.+.|..+.+
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~~~-------------~l~iL~~~~-~~~~~~i~H~fsG~~~~~~~~l~~G~~~si 173 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAHER-------------FMALLEPWL-DKLPGAVLHCFTGTREEMQACLARGLYIGI 173 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCchHH-------------HHHHHHHhc-cCCCCeEEEecCCCHHHHHHHHHCCCEEEE
Confidence 457788999999999999999753321 233333321 111135779999899999999999999887
Q ss_pred CccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCC----------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 303 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN----------RMSIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
.+..... .....++++++. . -.+.+-||+|-..+ .-.+..-......+... .+++.
T Consensus 174 ~g~i~~~-~~~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~l-----------~~~~~ 241 (258)
T PRK10425 174 TGWVCDE-RRGLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAHW-----------RGEDA 241 (258)
T ss_pred Cceeecc-cccHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHH-----------HCcCH
Confidence 7643211 111123343332 1 14677899863211 01122222222222221 14999
Q ss_pred HHHHHHHhHHHHHHcCC
Q 012333 371 ETVLRMATINGAKSVLW 387 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl 387 (466)
+++.+..+.|.-+++|+
T Consensus 242 ~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 242 AWLAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999888874
|
|
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=71.91 Aligned_cols=146 Identities=13% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCHHHHHHHHH-HHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhc
Q 012333 220 ATDRLLLETRD-MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRA 296 (466)
Q Consensus 220 ~~~~~l~~~~~-~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~ 296 (466)
.+...+...+. .++..++++.+|+.|...... .....+.+.+ .++. ..|.||..+. ++.++.++++
T Consensus 303 ~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~---------~~d~nl~dAI-lLg~-~RIGHG~~l~~~P~l~~~vke~ 371 (479)
T TIGR01431 303 RSLLDFIDALLGPSDKEKLPYFFHAGETNWQGT---------TVDENLIDAL-LLNT-TRIGHGFALVKHPLVLQMLKER 371 (479)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCC---------CchhHHHHHH-HcCC-ccccCcccccCCHHHHHHHHHh
Confidence 34445444444 555689999999988642110 0112233344 2322 3489999986 7889999999
Q ss_pred CCeEEECccchhhc-----cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 012333 297 GVKVSHCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAE 371 (466)
Q Consensus 297 g~~~~~~p~~~~~~-----~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 371 (466)
++.+.+||.+|... ....|++.++++|++++++||.+.....-.+..+.+.+...-. ...+++
T Consensus 372 ~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef~~a~~~~~-----------~~~~~l- 439 (479)
T TIGR01431 372 NIAVEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDFYIAFMGLA-----------SAKADL- 439 (479)
T ss_pred CCeEEECccchhhhcccCCcccChHHHHHHCCCcEEEeCCCccccCCCCchHHHHHHHHHhc-----------ccCCCH-
Confidence 99999999999765 2346899999999999999999865322234555544432110 001455
Q ss_pred HHHHHHhHHHHHHcCCC
Q 012333 372 TVLRMATINGAKSVLWD 388 (466)
Q Consensus 372 ~al~~~T~~~A~~lgl~ 388 (466)
+-++.+..|+.+.-.++
T Consensus 440 ~~L~~la~NSi~~Sfl~ 456 (479)
T TIGR01431 440 RTLKQLALNSIKYSALS 456 (479)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 44556667777776664
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00024 Score=65.87 Aligned_cols=141 Identities=22% Similarity=0.273 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhh--HHHHHhcCC
Q 012333 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGV 298 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~g~ 298 (466)
+.....+.+..+.+.|+++.+|+.+....... ..++++.++ ...|.||..+..+. +.++++.++
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~----------v~~~LD~l~----~~RIGHG~~l~~dp~L~~~~k~~nI 290 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNGGASV----------VKNALDLLG----TERIGHGYFLTKDPELINLLKSRNI 290 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCCChHH----------HHHHHHhhC----CccccCceeccCCHHHHHHHHhcCc
Confidence 34455566666666899999999886411111 122333121 23489999998766 999999999
Q ss_pred eEEECccchhhc-----cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 012333 299 KVSHCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 373 (466)
Q Consensus 299 ~~~~~p~~~~~~-----~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 373 (466)
.+.+||.++... -...|++++++.|+++.|+||-+....+..+....+.+..-. .+ ++++++.
T Consensus 291 ~lEiCP~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sDDP~~f~~~~Lt~dfy~A~~~~-----------~~-~~~~~~l 358 (399)
T KOG1097|consen 291 ALEICPISNQVLGLVSDLRNHPVARLLAAGVPVVINSDDPGFFGAAPLTLDFYLAFLGI-----------AP-NLDLREL 358 (399)
T ss_pred eEEEccchhhheeccccccccHHHHHHhCCCCEEEeCCCcccccCccccHHHHHHHHhc-----------cc-cCCHHHH
Confidence 999999999755 234689999999999999999986543322333333332211 01 3777776
Q ss_pred HHHHhHHHHHHcCCC
Q 012333 374 LRMATINGAKSVLWD 388 (466)
Q Consensus 374 l~~~T~~~A~~lgl~ 388 (466)
.++ ..|+.+...+.
T Consensus 359 ~~l-a~nai~~S~l~ 372 (399)
T KOG1097|consen 359 KRL-ALNAIKYSFLS 372 (399)
T ss_pred HHH-HHHHhhhccCC
Confidence 654 45766666553
|
|
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=58.49 Aligned_cols=249 Identities=15% Similarity=0.084 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHH
Q 012333 122 DSYISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197 (466)
Q Consensus 122 ~~~~~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
+.+...........+.|+-||+|+- +.....+.+..++.|+++..+.+++.... .+........+..-+....-+
T Consensus 45 ~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~-~p~~~~~~~i~~~ae~~v~ei 123 (316)
T COG1735 45 DEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAF-HPEYFALRPIEELAEFVVKEI 123 (316)
T ss_pred HHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEecccccccc-chhHHhhCCHHHHHHHHHHHH
Confidence 4445556677788899999999964 35677888899999999988877765442 232222222222222222222
Q ss_pred HHhccC---CCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCC
Q 012333 198 AKHHHA---ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ 274 (466)
Q Consensus 198 ~~~~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (466)
++-... ..+.++...+...+-...++.++.+.+..++.|.|+++|..... . +....+++.+.+.--
T Consensus 124 ~~Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt-~----------g~eq~~il~~egvdl 192 (316)
T COG1735 124 EEGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGT-M----------GLEQLRILAEEGVDL 192 (316)
T ss_pred HhcccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchh-h----------hHHHHHHHHHcCCCh
Confidence 221111 12444443333333223344566677777888999999986543 1 112445666666555
Q ss_pred CCeeEEEee-cCChhh-HHHHHhcCCeEEECccchhh--c--cCCccHHHHHHcCC--cEEEccCCCCCCCCCCHHHHHH
Q 012333 275 NNLLSAHTV-WVNHTE-IGLLSRAGVKVSHCPASAMR--M--LGFAPIKEMLHADI--CVSLGTDGAPSNNRMSIVDEMY 346 (466)
Q Consensus 275 ~~~~~~H~~-~~~~~~-~~~~~~~g~~~~~~p~~~~~--~--~~~~~~~~~~~~gi--~~~~gsD~~~~~~~~~~~~~~~ 346 (466)
.+..+.|+- ...+.. .+.++.+|+.+...-..... . ....++.++.+.|. .+.+|-|..... .+.+..
T Consensus 193 ~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~--~~~~~~-- 268 (316)
T COG1735 193 RKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLS--DDVFLK-- 268 (316)
T ss_pred hHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHHhhHhhheecccchhhhh--hhHHHH--
Confidence 678899987 333433 45577778876544221110 0 23456778888886 356652322110 011111
Q ss_pred HHHHHhcccccc--cC----CCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 347 LASLINKGREVF--AN----GTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 347 ~~~~~~~~~~~~--~~----~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
..........+ .. ....+.|++-+..=.++-.||+++|..
T Consensus 269 -~~~~~~~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 269 -SMLKANGGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred -hhhhhcCCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 00000011110 00 012346799666667777899999864
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0002 Score=64.84 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=113.4
Q ss_pred HHHHhcCceeeeecCccC--HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeE
Q 012333 132 IELIHSGVTCFAEAGGQH--VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR 209 (466)
Q Consensus 132 ~~~~~~GvTtv~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (466)
..+...|++.++.++... .....+.....+.++..+. |+-|.+.........+...++ .......-..++
T Consensus 21 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~-------GiHP~~~~~~~~~~~~~l~~l-~~~~~~~~~aIG 92 (255)
T PF01026_consen 21 ERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPAL-------GIHPWEAHEVNEEDLEELEEL-INLNRPKVVAIG 92 (255)
T ss_dssp HHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE----------GGGGGGHSHHHHHHHHHH-HHHTSTTEEEEE
T ss_pred HHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEe-------cCCcchhhhhhHHHHHHHHHH-HHhccccceeee
Confidence 457789999987765332 2333444445555454333 333333222223333333333 222221111111
Q ss_pred EEEeeccccc------CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEee
Q 012333 210 IWFGIRQIMN------ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV 283 (466)
Q Consensus 210 ~~~~~~~~~~------~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 283 (466)
- +++...+. .-.+.+++.+++|+++++++.+|+-.... ...+.+...+.. ...++.|+.
T Consensus 93 E-iGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~-------------~~l~il~~~~~~-~~~~i~H~f 157 (255)
T PF01026_consen 93 E-IGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHE-------------ELLEILKEYGPP-NLRVIFHCF 157 (255)
T ss_dssp E-EEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHH-------------HHHHHHHHTTGG-TSEEEETT-
T ss_pred e-eccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHH-------------HHHHHHHhcccc-ceeEEEecC
Confidence 1 33333111 11345788899999999999999966211 134444444411 126789998
Q ss_pred cCChhhHHHHHhcCCeEEECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCC------CCCHHHHHHHHHHHhccc
Q 012333 284 WVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGR 355 (466)
Q Consensus 284 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~ 355 (466)
.-+.++++.+.+.|..+.+.+....+. ....++++.. + -.+.+-||.|-..+ ...+..-......+.+.+
T Consensus 158 ~g~~~~~~~~~~~g~~~S~~~~~~~~~--~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~~ 235 (255)
T PF01026_consen 158 SGSPEEAKKFLDLGCYFSFSGAITFKN--SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEIK 235 (255)
T ss_dssp -S-HHHHHHHHHTTEEEEEEGGGGSTT--SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCceEEecccccccc--cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHHc
Confidence 889999999999999998887644321 1224444433 1 25788999852211 001111111111122111
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 356 EVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 356 ~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
+++++++.+....|..+++|
T Consensus 236 -----------~~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 236 -----------GISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp -----------TSTHHHHHHHHHHHHHHHHT
T ss_pred -----------CCCHHHHHHHHHHHHHHHhC
Confidence 49999999999999988875
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00022 Score=53.05 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=29.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCch
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSAD 58 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~ 58 (466)
..|++|.|+.|++. .-+.++||.|+||+|+.||+...
T Consensus 65 ~lD~VItNa~IiD~----~GI~KADIGIkdG~I~gIGkAGN 101 (121)
T PF00449_consen 65 ALDLVITNALIIDY----TGIVKADIGIKDGRIVGIGKAGN 101 (121)
T ss_dssp C-SEEEEEEEEEET----TEEEEEEEEEETTEEEEEE-EB-
T ss_pred cccEEEeCcEEEec----CCcEEeeEEeeCCEEEEEeccCC
Confidence 68999999999954 23567899999999999999765
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00034 Score=44.50 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCeeEEEEccEEEEECCeeeeccHHHHHHH
Q 012333 428 TENVVSVMCNGQWVMKNKKILLLMRGRLFQL 458 (466)
Q Consensus 428 ~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 458 (466)
+..|.+|||||++++++|++.+...|+++++
T Consensus 17 ~~GI~~V~VNG~~vv~~g~~t~~~~G~~lrr 47 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVVEDGEVTGARPGRVLRR 47 (48)
T ss_dssp -BSEEEEEETTEEEECTTEESSS----B---
T ss_pred CCCEEEEEECCEEEEECCeECCCCCCeEecC
Confidence 4689999999999999999999999999875
|
5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A. |
| >cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=55.74 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=68.1
Q ss_pred eEEEeecCCh--hhHHHHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCC--CCHHHHHHHHHH
Q 012333 278 LSAHTVWVNH--TEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASL 350 (466)
Q Consensus 278 ~~~H~~~~~~--~~~~~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~--~~~~~~~~~~~~ 350 (466)
.|.||..+.. .....++..++.+.+||.++... -...|+..+++.|++++++||.+..... -.+.++...+..
T Consensus 351 RIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~l~~~~~~HP~~~~l~~Gl~VsInTDDPl~f~~t~~~L~eEY~~a~~ 430 (496)
T cd01319 351 GISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSLFLSYEKNPFPEFFKRGLNVSLSTDDPLQFHFTKEPLMEEYSIAAQ 430 (496)
T ss_pred ccccccccCCCHHHHHHHHHcCCeEEEecCccHhhhcCcccChHHHHHHCCCeEEEeCCCchhhCCCCCcHHHHHHHHHH
Confidence 3889998853 33445667899999999999755 2346899999999999999999854321 235566554432
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~ 389 (466)
.. ++|..++. .++.|+.+..++++
T Consensus 431 ~~--------------~Ls~~Dl~-eLarNSV~~Sf~~~ 454 (496)
T cd01319 431 VW--------------KLSTCDMC-ELARNSVLQSGFEH 454 (496)
T ss_pred Hc--------------CCCHHHHH-HHHHHHHHHhCCCH
Confidence 21 48887775 44568888777653
|
AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway. |
| >TIGR01429 AMP_deaminase AMP deaminase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.045 Score=54.77 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=68.7
Q ss_pred eEEEeecCC--hhhHHHHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCC--CCHHHHHHHHHH
Q 012333 278 LSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASL 350 (466)
Q Consensus 278 ~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~--~~~~~~~~~~~~ 350 (466)
.|.||..+. +....++...++.+.+||.++... -...|+..+++.|++++++||.+..... -.+.++...+..
T Consensus 463 RIgHGi~l~~dp~L~yl~~~~qI~LevCPtSN~~l~~~y~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~ 542 (611)
T TIGR01429 463 GINHGILLRKVPVLQYLYYLTQIPIAMSPLSNNSLFLEYSKNPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQ 542 (611)
T ss_pred ccccceecCCCHHHHHHHHHcCCeEEEcCCcchhhccChhhChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHH
Confidence 388999874 444555678899999999999754 2345899999999999999999854321 235566554432
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~ 389 (466)
.. +++..++.++ ..|+.+..++++
T Consensus 543 ~~--------------~Ls~~Dl~eL-arNSV~~S~~~~ 566 (611)
T TIGR01429 543 VW--------------KLSTCDMCEL-ARNSVLQSGFEH 566 (611)
T ss_pred Hh--------------CCCHHHHHHH-HHHHHHHhCCCH
Confidence 21 4888777654 568888877753
|
This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model. |
| >PLN03055 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.026 Score=56.17 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=70.4
Q ss_pred eEEEeecC--ChhhHHHHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCC--CCHHHHHHHHHH
Q 012333 278 LSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASL 350 (466)
Q Consensus 278 ~~~H~~~~--~~~~~~~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~--~~~~~~~~~~~~ 350 (466)
.|.||..+ +++.+.+++..++.+.+||.++... -...|+..+++.|++++++||.+..... -.+.++...+..
T Consensus 441 RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~l~~~y~~HP~~~~~~~Gl~VSInTDDPl~f~tT~epL~eEY~~aa~ 520 (602)
T PLN03055 441 NIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEYSIAAQ 520 (602)
T ss_pred eecCccccCCCHHHHHHHHHcCCeEEEccCcchhhccchhhChHHHHHHCCCEEEEcCCCcchhcCCCCcHHHHHHHHHH
Confidence 47899886 3667788889999999999999754 2245899999999999999999865321 135566555432
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.. ++|..+..+ ++.|+.+..+++
T Consensus 521 ~~--------------~LS~~DL~e-LarNSV~~Sf~~ 543 (602)
T PLN03055 521 VW--------------KLSSCDLCE-IARNSVLQSGFP 543 (602)
T ss_pred Hh--------------CCCHHHHHH-HHHHHHHHhcCC
Confidence 21 388888754 466888888775
|
|
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.33 Score=44.21 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC----------hhhH
Q 012333 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----------HTEI 290 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~----------~~~~ 290 (466)
+.+.+.++++.+.++|+++.+|+...... .....+..+ .-+.++.|..... .+.+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~l~------------~l~~l~~~~---~l~ivldH~G~p~~~~~~~~~~~~~~l 172 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVDLP------------ALLPFLQKL---PVAVVIDHFGRPDVTKGVDGAEFAALL 172 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhhHH------------HHHHHHHHC---CCCEEEECCCCCCCCCCCCCHhHHHHH
Confidence 66778889999999999999998532110 022233333 4568889966432 1223
Q ss_pred HHHHhcCCeEEECccchhhcc--C---C-ccHHHHHHcC-CcEEEccCCCCC
Q 012333 291 GLLSRAGVKVSHCPASAMRML--G---F-APIKEMLHAD-ICVSLGTDGAPS 335 (466)
Q Consensus 291 ~~~~~~g~~~~~~p~~~~~~~--~---~-~~~~~~~~~g-i~~~~gsD~~~~ 335 (466)
+.++..++.+.++-....... . . +-++.+++.| -++.+|||+|..
T Consensus 173 ~~l~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~g~dRlmfGSD~P~~ 224 (263)
T cd01311 173 KLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWPHP 224 (263)
T ss_pred HHHhcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCCC
Confidence 333223555554432211100 0 1 1223334445 468899999864
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PLN02768 AMP deaminase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.051 Score=55.52 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=68.7
Q ss_pred EEEeecCC--hhhHHHHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCC--CCHHHHHHHHHHH
Q 012333 279 SAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASLI 351 (466)
Q Consensus 279 ~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~--~~~~~~~~~~~~~ 351 (466)
|.||..+. +....++...++.+.+||.++... -...|+..+++.|++|+++||.+..... -.+.++...+...
T Consensus 675 IgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~~l~~~y~~HPf~~f~~~GL~VSLNTDDPL~fhtT~epL~EEYsvAak~ 754 (835)
T PLN02768 675 IAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASV 754 (835)
T ss_pred cCCccccCcCHHHHHHHHHcCCeEEECCCcchhhhcchhhChHHHHHHCCCEEEEcCCCccccCCCCCCHHHHHHHHHHH
Confidence 68988863 455567777899999999999754 2345899999999999999999865322 1356665554332
Q ss_pred hcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 352 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 352 ~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
. +++..++.++ +.|+.+..+++
T Consensus 755 ~--------------~LS~~DL~EL-arNSV~aSff~ 776 (835)
T PLN02768 755 W--------------KLSSCDLCEI-ARNSVYQSGFS 776 (835)
T ss_pred h--------------CcCHHHHHHH-HHHHHHHhcCC
Confidence 1 4888777755 56888777775
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.47 Score=41.55 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=63.8
Q ss_pred eeEEEeecCChhhHHHHHhcCCeEEECccchhhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccc
Q 012333 277 LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 356 (466)
Q Consensus 277 ~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (466)
.++.|-..+..+.++.+++.++.+.++...........-++.+.+.|++++++||..... ++. .+..+..+.
T Consensus 115 dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~~---d~~-~~~~~~~i~---- 186 (212)
T PRK06361 115 DILAHPGLITEEEAELAAENGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAPS---DLI-TYEFARKVA---- 186 (212)
T ss_pred cEecCcchhhHHHHHHHHHcCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCHH---HHH-HHHHHHHHH----
Confidence 467888777788899999999998887522211111223445567799999999976221 222 233222222
Q ss_pred cccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 357 VFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 357 ~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
...+++.++++.+.+.||+.+++.
T Consensus 187 -------~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 187 -------LGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred -------cCCCCCHHHHHHHHHHhHHHHHHh
Confidence 223699999999999999999864
|
|
| >PTZ00310 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.14 Score=55.92 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=69.9
Q ss_pred eEEEeecCC--hhhHHHHHhcCCeEEECccchhhc---cCCccHHHHHHcCCcEEEccCCCCCCCC--CCHHHHHHHHHH
Q 012333 278 LSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASL 350 (466)
Q Consensus 278 ~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~---~~~~~~~~~~~~gi~~~~gsD~~~~~~~--~~~~~~~~~~~~ 350 (466)
.|.||..+. +..+.+++..++.+.+||.++... -...|+..+++.|++++++||.+..... -.+.++...+..
T Consensus 1134 RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~l~~sy~~hP~~~f~~~Gl~VSLnTDDPl~f~tT~EpL~eEYsiaa~ 1213 (1453)
T PTZ00310 1134 SICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNALFLAFLENPFPVFFHRGLNVSLSTDDPLMFHQTQEPLIEEYSIAAR 1213 (1453)
T ss_pred cccchhhhCcCHHHHHHHHHcCCeEEECCCchHhhhhchhhCcHHHHHHCCCEEEECCCCccccCCCcccHHHHHHHHHH
Confidence 388999873 455667888999999999999754 2346999999999999999999865322 125566554432
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.. +++..++.++ ..|+...-|++
T Consensus 1214 ~~--------------~LS~~Dl~el-arNSV~~SGf~ 1236 (1453)
T PTZ00310 1214 VW--------------GLSLNDLCEI-ARNSVLQSGFD 1236 (1453)
T ss_pred Hh--------------CCCHHHHHHH-HHHHHHHcCCC
Confidence 21 4888887765 55887777765
|
|
| >KOG3020 consensus TatD-related DNase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.24 E-value=6.5 Score=35.91 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEEC
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~ 303 (466)
.+++-+++|.....|+.+|+-+.... ..+++........+-++.|+..-+.++++.+.+.++.+..+
T Consensus 136 vFekQl~LA~~~~~Pl~iH~r~a~~d-------------~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~ 202 (296)
T KOG3020|consen 136 VFEKQLDLAKRLKLPLFIHCRSAHED-------------LLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFT 202 (296)
T ss_pred HHHHHHHHHHHccCCeeeechhhhHH-------------HHHHHHHhccccCCceEEEeccCCHHHHHHHHHccEEeccc
Confidence 36788899999999999999663221 34444444332232578999999999999999999666655
Q ss_pred ccch
Q 012333 304 PASA 307 (466)
Q Consensus 304 p~~~ 307 (466)
+...
T Consensus 203 g~~~ 206 (296)
T KOG3020|consen 203 GCSL 206 (296)
T ss_pred ceee
Confidence 5543
|
|
| >PTZ00310 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.53 Score=51.63 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=65.9
Q ss_pred eEEEeecCCh-hhHHHH-HhcCCeEEECccchhhcc----CCccHHHHHHcCCcEEEccCCCCCCCCC--CHHHHHHHHH
Q 012333 278 LSAHTVWVNH-TEIGLL-SRAGVKVSHCPASAMRML----GFAPIKEMLHADICVSLGTDGAPSNNRM--SIVDEMYLAS 349 (466)
Q Consensus 278 ~~~H~~~~~~-~~~~~~-~~~g~~~~~~p~~~~~~~----~~~~~~~~~~~gi~~~~gsD~~~~~~~~--~~~~~~~~~~ 349 (466)
.|.||..+.. ..+..+ +..++.+.+||.++.... ...|+..+++.|++++++||.+.....- .+.++...+.
T Consensus 504 RI~HGi~l~d~p~LqyL~~e~qI~LeVCPlSN~~l~v~sy~~HPi~~fl~~GL~VSLNTDDPl~F~tt~EpL~EEY~iaa 583 (1453)
T PTZ00310 504 VITRATSIADYPVLQYLCGLHRVGLTVSPLRDHALSITAYFDHPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEYATAM 583 (1453)
T ss_pred cccchhccCchHHHHHHHHHcCCeEEECCCcccccCCCchhhCcHHHHHHCCCEEEECCCCccccCCCCccHHHHHHHHH
Confidence 4788877643 334444 488999999999997652 3458999999999999999998653321 3556655443
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 350 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
-.. +++..++.++ +.|+....+++
T Consensus 584 q~~--------------gLS~~DL~eL-arNSV~aSf~~ 607 (1453)
T PTZ00310 584 KLF--------------SLSPLDTTEL-ARNSVLNSSFP 607 (1453)
T ss_pred HHh--------------CcCHHHHHHH-HHHHHHHhCCC
Confidence 221 4888777654 45666666654
|
|
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=5.9 Score=36.59 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccC-CCCeeEEEee--c-CChhhHHHHHh
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-QNNLLSAHTV--W-VNHTEIGLLSR 295 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~--~-~~~~~~~~~~~ 295 (466)
.++..+..+.+.|.++|+++.+|............. ...+..+-..+... .-+.++.|+. + ...+.+..+..
T Consensus 141 ~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~----~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~ 216 (293)
T COG2159 141 PDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG----HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAIELAYA 216 (293)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC----CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHHHh
Confidence 344457899999999999999998764432111100 01122222222222 3467899986 2 22233333322
Q ss_pred c-CCeEEECccchhhccCC-ccHHHHHHcC-CcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 012333 296 A-GVKVSHCPASAMRMLGF-APIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 372 (466)
Q Consensus 296 ~-g~~~~~~p~~~~~~~~~-~~~~~~~~~g-i~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 372 (466)
. ++.+...-.... ... .-+..+.+.+ -++.+|||+|... +. ........ .+++.+.
T Consensus 217 ~~nvy~d~s~~~~~--~~~~~~~~~~~~~~~dkilFGSD~P~~~----~~--~~l~~~~~-------------l~l~~e~ 275 (293)
T COG2159 217 HPNVYLDTSGVRPK--YFAPPLLEFLKELGPDKILFGSDYPAIH----PE--VWLAELDE-------------LGLSEEV 275 (293)
T ss_pred CCCceeeeeccccc--cCChHHHHHHHhcccCeEEecCCCCCcC----HH--HHHHHHHh-------------cCCCHHH
Confidence 2 333332211000 001 1233444422 4689999976432 22 12222121 1377788
Q ss_pred HHHHHhHHHHHHcCCCC
Q 012333 373 VLRMATINGAKSVLWDN 389 (466)
Q Consensus 373 al~~~T~~~A~~lgl~~ 389 (466)
.-+.+-.|++++++++.
T Consensus 276 k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 276 KEKILGENAARLLGLDP 292 (293)
T ss_pred HHHHHHHhHHHHhCcCC
Confidence 88889999999999853
|
|
| >PRK07945 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=7.1 Score=36.89 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=31.4
Q ss_pred hhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 287 HTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 287 ~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
.+.++.+++.|+.+.++-... +. ....-++.+.+.|+++++|||...
T Consensus 248 ~~i~~a~~e~g~~lEINt~~~-r~~P~~~il~~a~e~G~~vtigSDAH~ 295 (335)
T PRK07945 248 EAVFAACREHGTAVEINSRPE-RRDPPTRLLRLALDAGCLFSIDTDAHA 295 (335)
T ss_pred HHHHHHHHHhCCEEEEeCCCC-CCCChHHHHHHHHHcCCeEEecCCCCC
Confidence 355788888999887774322 21 111235667788999999999643
|
|
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.05 Score=42.28 Aligned_cols=15 Identities=47% Similarity=1.052 Sum_probs=14.2
Q ss_pred CcEEeecccccccCC
Q 012333 75 SQILLPGFVNTHVHT 89 (466)
Q Consensus 75 G~~v~PG~ID~H~H~ 89 (466)
|++++|||||.|+|+
T Consensus 1 ~kli~~g~vd~hVhl 15 (142)
T PF12890_consen 1 GKLILPGLVDVHVHL 15 (142)
T ss_pred Cceeehhhhhhhhhh
Confidence 689999999999998
|
|
| >COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.89 E-value=8.6 Score=34.26 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=30.8
Q ss_pred hhHHHHHhcCCeEEECccchhhccCCccHHHHHHcCCcEEEccCCCCC
Q 012333 288 TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPS 335 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~gi~~~~gsD~~~~ 335 (466)
+.++.+.+.|+.+.+.-..........-++.+.+.|+.++++||....
T Consensus 151 ~~~~~~~~~g~aleins~~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~ 198 (237)
T COG1387 151 ELIELAEKNGKALEINSRPGRLDPNSEILRLARELGVKLAIGTDAHRP 198 (237)
T ss_pred HHHHHHHHhCcEEeecCCcCccCchHHHHHHHHHhCCeEEeecCcCCh
Confidence 567778888888776543111112223455566779999999997643
|
|
| >PRK00912 ribonuclease P protein component 3; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=3.2 Score=37.03 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=60.0
Q ss_pred ChhhHHHHHhcCCeEEECccchhhcc------CC----ccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhccc
Q 012333 286 NHTEIGLLSRAGVKVSHCPASAMRML------GF----APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 355 (466)
Q Consensus 286 ~~~~~~~~~~~g~~~~~~p~~~~~~~------~~----~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 355 (466)
..+.++.+++.|+.+.++-....+.. .. ..++...+.|+++++|||......-.++.+....+..
T Consensus 120 ~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~~----- 194 (237)
T PRK00912 120 NHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAEL----- 194 (237)
T ss_pred CHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHHH-----
Confidence 34667888889988877654322211 01 2334455679999999997643222233333333321
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC-CcccccccC
Q 012333 356 EVFANGTTDPAALPAETVLRMATINGAKSVLWD-NDIGSLEAG 397 (466)
Q Consensus 356 ~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~-~~~G~i~~G 397 (466)
.|++.++++.+++.+|.+++... .+.+.|..|
T Consensus 195 ----------~Gl~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 227 (237)
T PRK00912 195 ----------FGMEEDEALKALSYYPESIIKKNRNRKNYVIEG 227 (237)
T ss_pred ----------cCCCHHHHHHHHHHhHHHHHHhhccCCCccccc
Confidence 25999999999999999999653 233445444
|
|
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.4 Score=40.05 Aligned_cols=167 Identities=11% Similarity=-0.006 Sum_probs=77.4
Q ss_pred cCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEE
Q 012333 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 281 (466)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 281 (466)
+.+--.++...........++.....+.+.|.++++++.+|+.............. .......+..+ -+-+.++.|
T Consensus 96 ~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~--~~~~~~~~~~~--P~l~ii~~H 171 (273)
T PF04909_consen 96 ELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPAD--PEELEELLERF--PDLRIILAH 171 (273)
T ss_dssp TTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHH--HHHHTTHHHHS--TTSEEEESG
T ss_pred ccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHH--HHHHHHHHHHh--cCCeEEEec
Confidence 44334455444333333333333358999999999999999751111100000000 00001112221 224578889
Q ss_pred eecC--Ch-hhHHHHHhc-CCeEEECccc-----hhhccCCccHHHHHHc-C-CcEEEccCCCCCCCCCCHHHHHHHHHH
Q 012333 282 TVWV--NH-TEIGLLSRA-GVKVSHCPAS-----AMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASL 350 (466)
Q Consensus 282 ~~~~--~~-~~~~~~~~~-g~~~~~~p~~-----~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~~~~~~~~~~~~~ 350 (466)
+... .. +.++.+.+. ++.+.+.-.. .......+.+..+++. | -++.+|||++... ..........
T Consensus 172 ~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P~~~----~~~~~~~~~~ 247 (273)
T PF04909_consen 172 LGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSDYPHPD----GASPYEYIWE 247 (273)
T ss_dssp GGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE--TTSST----HHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCCCCCCC----ccccHHHHHH
Confidence 8775 22 334444433 3444332110 0000122344555444 3 3799999997542 2222111111
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
..... .+|.++.=+.+..|++++++|
T Consensus 248 ~~~~~-----------~l~~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 248 AYFLD-----------DLSEEEREKILYDNARRLYGL 273 (273)
T ss_dssp HHHHH-----------HSSHHHHHHHHTHHHHHHHTC
T ss_pred hhhcc-----------CCCHHHHHHHHhHhHHHHcCc
Confidence 11000 158888999999999999885
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=11 Score=33.61 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCe
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~ 299 (466)
.+.+.+..++++|++.+++++.|..+.....-.. ..+.....+.-..+.+.-|+... .......|+.
T Consensus 142 ~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~---------i~~~ak~~G~~~~~VVkHha~p~----v~~~~~~Gi~ 208 (285)
T COG1831 142 ASNEVLEYAMELAKDVDCAVQLHTESLDEETYEE---------IAEMAKEAGIKPYRVVKHHAPPL----VLKCEEVGIF 208 (285)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHH---------HHHHHHHhCCCcceeEeecCCcc----chhhhhcCcC
Confidence 3455678889999999999999997654322111 22334444443334444444331 1222234554
Q ss_pred EEECccchhhccCCccHHHHHHcCCcEEEccCCCC----CCCCCCHHHHH-HHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 300 VSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEM-YLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~gi~~~~gsD~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.++- .....+...++.|-...+=||+.- .+.-+.++..- +...+++++ .++.+.+.
T Consensus 209 pSV~-------asr~~v~~a~~~g~~FmmETDyIDDp~RpgavL~PktVPrr~~~i~~~g------------~~~ee~vy 269 (285)
T COG1831 209 PSVP-------ASRKNVEDAAELGPRFMMETDYIDDPRRPGAVLGPKTVPRRTREILEKG------------DLTEEDVY 269 (285)
T ss_pred Cccc-------ccHHHHHHHHhcCCceEeecccccCcccCCCcCCccchhHHHHHHHHhc------------CCcHHHHH
Confidence 3221 112257788899999999999852 11223444332 334444443 37889999
Q ss_pred HHHhHHHHHHcCCC
Q 012333 375 RMATINGAKSVLWD 388 (466)
Q Consensus 375 ~~~T~~~A~~lgl~ 388 (466)
+..-.+|.+++|++
T Consensus 270 ~i~~E~pe~VYg~~ 283 (285)
T COG1831 270 RIHVENPERVYGIE 283 (285)
T ss_pred HHHHhCHHHHhCcc
Confidence 99999999999874
|
|
| >TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family | Back alignment and domain information |
|---|
Probab=86.70 E-value=24 Score=31.84 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=29.3
Q ss_pred hhHHHHHhcCCeEEECccchhhc--cCC----ccHHHHHHcCCcEEEccCCC
Q 012333 288 TEIGLLSRAGVKVSHCPASAMRM--LGF----APIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~~--~~~----~~~~~~~~~gi~~~~gsD~~ 333 (466)
+.++.+++.|+.+.++-. .++. ... .-++.+.+.|+++++|||.-
T Consensus 189 ~il~~~~~~g~~lEiNt~-g~r~~~~~~yP~~~il~~~~~~g~~itlgSDAH 239 (253)
T TIGR01856 189 RILKLVASQGKALEFNTS-GLRKPLEEAYPSKELLNLAKELGIPLVLGSDAH 239 (253)
T ss_pred HHHHHHHHcCCEEEEEcH-hhcCCCCCCCCCHHHHHHHHHcCCCEEecCCCC
Confidence 446778888988877643 2222 111 23455667799999999964
|
This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ. |
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.76 E-value=27 Score=31.63 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccC-CCCeeEEEeecCCh---------hhHHH
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-QNNLLSAHTVWVNH---------TEIGL 292 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~---------~~~~~ 292 (466)
..+++.++..+.+|+.+..+..... ....+...... +-+.++.|+..... +.+.+
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~~~q---------------l~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~ 188 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVDPHQ---------------LPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALAR 188 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeChhh---------------hHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHH
Confidence 5678888889999998877764321 11222222222 24577888766521 23444
Q ss_pred HHhc-CCeEEECccchhhccC--CccH----HHHHHc-C-CcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCC
Q 012333 293 LSRA-GVKVSHCPASAMRMLG--FAPI----KEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 363 (466)
Q Consensus 293 ~~~~-g~~~~~~p~~~~~~~~--~~~~----~~~~~~-g-i~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (466)
+++. ++.+.+.-...+.... ...+ ..+++. | -++.+|||+|...-..+ +.....+..- -
T Consensus 189 la~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSdwPv~~l~~~-~~~~~~~~~~---~-------- 256 (279)
T COG3618 189 LARRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSDWPVTSLESD-FASWVAATRE---L-------- 256 (279)
T ss_pred HHhCCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCCCCcccccCC-hHHHHHHHHH---H--------
Confidence 4433 4444333211211111 1122 223333 5 57899999986532211 1222211110 0
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 364 DPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 364 ~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
. .+ +..+=-+....||++++++
T Consensus 257 v-~~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 257 V-PG-DAAERARILVDNARRLYRL 278 (279)
T ss_pred c-CC-CHHHHHHHHhhCHHHHhCC
Confidence 0 02 4777788889999998865
|
|
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.58 E-value=15 Score=33.43 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHH-HHhhhc--cCCCCeeEEEeecCChhhHHHHHhcC--
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKIE--FLQNNLLSAHTVWVNHTEIGLLSRAG-- 297 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~H~~~~~~~~~~~~~~~g-- 297 (466)
+.+-..++...+.|+++.+|-.......+.... ....++ .++.+. +..-+.+++|.+. .+.++..++.+
T Consensus 118 ~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdr----E~~Fi~~vl~pl~~~fP~LKIV~EHiTT--~dav~~v~~~~~n 191 (344)
T COG0418 118 EKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDR----EAAFIESVLEPLRQRFPKLKIVLEHITT--KDAVEYVKDANNN 191 (344)
T ss_pred HHHHHHHHHHHHcCCeEEEecccCCccccchhh----HHHHHHHHHHHHHhhCCcceEEEEEecc--HHHHHHHHhcCcc
Confidence 345566777788899999998765443321111 001111 233222 2344678899874 55566666665
Q ss_pred CeEEECccchhhc------cC----------------CccHHHHHHcC-CcEEEccCCCCCC
Q 012333 298 VKVSHCPASAMRM------LG----------------FAPIKEMLHAD-ICVSLGTDGAPSN 336 (466)
Q Consensus 298 ~~~~~~p~~~~~~------~~----------------~~~~~~~~~~g-i~~~~gsD~~~~~ 336 (466)
+..+++|+.-+.. .+ ...++++.-.| -.+.+|||+.|+.
T Consensus 192 laATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~ 253 (344)
T COG0418 192 LAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHA 253 (344)
T ss_pred eeeEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCc
Confidence 5677777754311 11 12344444444 5699999998763
|
|
| >PRK07328 histidinol-phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=35 Score=31.04 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=30.0
Q ss_pred hhHHHHHhcCCeEEECccchhhc--cCC----ccHHHHHHcCCcEEEccCCC
Q 012333 288 TEIGLLSRAGVKVSHCPASAMRM--LGF----APIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~~--~~~----~~~~~~~~~gi~~~~gsD~~ 333 (466)
+.++.+++.|+.+.++-. .++. ... .-++.+.+.|+++++|||..
T Consensus 181 ~il~~~~~~g~~lEiNt~-~~r~~~~~~yp~~~il~~~~~~g~~itigSDAH 231 (269)
T PRK07328 181 EALDVIAAAGLALEVNTA-GLRKPVGEIYPSPALLRACRERGIPVVLGSDAH 231 (269)
T ss_pred HHHHHHHHcCCEEEEEch-hhcCCCCCCCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 456788888998877743 2222 111 23456678899999999964
|
|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.68 E-value=67 Score=32.98 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=31.4
Q ss_pred hhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 288 TEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 288 ~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
+.++.+++.|+.+.++-.+. +. .....++.+.+.|+++++|||...
T Consensus 483 ~i~~~a~~~G~~lEINa~~~-r~~~~~~~~~~~~e~Gv~i~igSDAH~ 529 (570)
T PRK08609 483 QLIELAKETNTALELNANPN-RLDLSAEHLKKAQEAGVKLAINTDAHH 529 (570)
T ss_pred HHHHHHHHhCCEEEEcCCcc-ccCccHHHHHHHHHcCCEEEEECCCCC
Confidence 33556688898887775432 22 223356778899999999999653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 466 | ||||
| 3hpa_A | 479 | Crystal Structure Of An Amidohydrolase Gi:44264246 | 2e-48 | ||
| 3lnp_A | 468 | Crystal Structure Of Amidohydrolase Family Protein | 2e-46 | ||
| 4dyk_A | 451 | Crystal Structure Of An Adenosine Deaminase From Ps | 2e-46 | ||
| 4f0r_A | 447 | Crystal Structure Of An Adenosine Deaminase Homolog | 9e-40 | ||
| 4dzh_A | 472 | Crystal Structure Of An Adenosine Deaminase From Xa | 2e-39 | ||
| 1p1m_A | 406 | Structure Of Thermotoga Maritima Amidohydrolase Tm0 | 3e-37 | ||
| 1j6p_A | 418 | Crystal Structure Of Metal-Dependent Hydrolase Of C | 2e-32 | ||
| 2paj_A | 492 | Crystal Structure Of An Amidohydrolase From An Envi | 2e-26 | ||
| 3ls9_A | 456 | Crystal Structure Of Atrazine Chlorohydrolase Trzn | 2e-24 | ||
| 3lsb_A | 456 | Crystal Structure Of The Mutant E241q Of Atrazine C | 6e-24 | ||
| 2uz9_A | 476 | Human Guanine Deaminase (Guad) In Complex With Zinc | 2e-23 | ||
| 3e0l_A | 455 | Computationally Designed Ammelide Deaminase Length | 2e-21 | ||
| 2ood_A | 475 | Crystal Structure Of Guanine Deaminase From Bradyrh | 4e-16 | ||
| 2i9u_A | 439 | Crystal Structure Of Guanine Deaminase From C. Acet | 1e-15 | ||
| 3v7p_A | 427 | Crystal Structure Of Amidohydrolase Nis_0429 (Targe | 1e-10 | ||
| 2bb0_A | 421 | Structure Of Imidazolonepropionase From Bacillus Su | 5e-04 |
| >pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An Evironmental Sample Of Sargasso Sea Length = 479 | Back alignment and structure |
|
| >pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein Olei01672_1_465 From Oleispira Antarctica Length = 468 | Back alignment and structure |
|
| >pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With Bound Zn Length = 451 | Back alignment and structure |
|
| >pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn And 5'- Methylthioadenosine (Unproductive Complex) Length = 447 | Back alignment and structure |
|
| >pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From Xanthomonas Campestris (Target Nysgrc-200456) With Bound Zn Length = 472 | Back alignment and structure |
|
| >pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936 Bound To Ni And Methionine Length = 406 | Back alignment and structure |
|
| >pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM THERMOTOGA Maritima At 1.9 A Resolution Length = 418 | Back alignment and structure |
|
| >pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An Environmental Sample Of Sargasso Sea Length = 492 | Back alignment and structure |
|
| >pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1 Complexed With Zinc Length = 456 | Back alignment and structure |
|
| >pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1 Complexed With Zinc And Ametrin Length = 456 | Back alignment and structure |
|
| >pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And Its Product Xanthine. Length = 476 | Back alignment and structure |
|
| >pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase Length = 455 | Back alignment and structure |
|
| >pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium Japonicum Length = 475 | Back alignment and structure |
|
| >pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C. Acetobutylicum With Bound Guanine In The Active Site Length = 439 | Back alignment and structure |
|
| >pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target Efi-500396) From Nitratiruptor Sp. Sb155-2 Length = 427 | Back alignment and structure |
|
| >pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis Length = 421 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 483 bits (1246), Expect = e-169
Identities = 125/458 (27%), Positives = 218/458 (47%), Gaps = 33/458 (7%)
Query: 4 NSSGGGSSSGSLGSSSTMILHNAVIVTMD------KESRVFRNGGVFVVQDRIKAIGQSA 57
+ S + + + +++ I+ ++ S + + + + I AI +
Sbjct: 8 SESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQS 67
Query: 58 DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESN 117
A + +DL Q+L+PG+VN H H + L +G+ADD+ LMTWL + +WP E+
Sbjct: 68 SCQIP----ATETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQ 123
Query: 118 MT-EEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEG 176
E T L E+I SG T FA+ + + +A G+RA +D
Sbjct: 124 HVDEHFVKQGTELAIAEMIQSGTTTFADMYF-YPQQSGEAALAAGIRAVCFAPVLD---- 178
Query: 177 LPASWAVRTTDDCIQSQKEL---YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR 233
P ++A + D+ I+ E + H G ++I FG +D L E ++
Sbjct: 179 FPTNYA-QNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSD 237
Query: 234 EFKTGIHMHVAEIPYENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291
+ + +H+ E +E ++T L I FL + H V+ +I
Sbjct: 238 QLDMPVQIHLHETDFEVSESLET----FNKRPTQRLADIGFLNERVSCVHMTQVDDGDIK 293
Query: 292 LLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASL 350
+L + G + HCP S +++ GF PI ++ A+I +++GTDGA SNN + + E A+L
Sbjct: 294 ILQKTGASIIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASNNDLDMFSETKTAAL 353
Query: 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 410
+ KG + D +A+PA L MAT+ GA+++ D+ GSL+ GK AD+ +D +
Sbjct: 354 LAKGV------SQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTL 407
Query: 411 PMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448
PV D ++ +VYC ++ V V NG+ ++KN ++
Sbjct: 408 SSQPVFDPVSHMVYCTKSTQVSHVWVNGRCLLKNGELT 445
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 467 bits (1204), Expect = e-163
Identities = 116/432 (26%), Positives = 194/432 (44%), Gaps = 24/432 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ +V ++ + V + V V I A+ +AD +F+ + + L+P
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFA--PARTVSRPDAALMP 73
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMT-EEDSYISTLLCGIELIHSGV 139
G VN H H L +G+ADD+ LM WL IWP E+ + E T L E++ G
Sbjct: 74 GLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGT 133
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199
TC E A + G RA + +D P +WA + D+ EL+ +
Sbjct: 134 TCVNE-NYFFADVQAAVYKQHGFRALVGAVIID----FPTAWA-SSDDEYFARAGELHDQ 187
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259
D I F D R +A + +H+H E E +
Sbjct: 188 WRD--DPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQ--- 242
Query: 260 DHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPI 316
+G + LD++ + + L++ H + EI L + GV V HCP S +++ GF P
Sbjct: 243 -YGQRPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPA 301
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
+ A + +++GTDG SNN + + E A+++ K D AL A T LR
Sbjct: 302 CALQRASVNLAIGTDGCASNNDLDMFSENRTAAILAKAV------ANDATALDAATTLRA 355
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMC 436
AT+ GA+++ + + IGS+E GK+AD+V VD + P+H ++ L+Y V V
Sbjct: 356 ATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIYAAGRHQVTDVWI 415
Query: 437 NGQWVMKNKKIL 448
G+ + ++++
Sbjct: 416 AGKPKLVQRELI 427
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 465 bits (1198), Expect = e-162
Identities = 127/432 (29%), Positives = 207/432 (47%), Gaps = 25/432 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++L IV ++ V R+ + + +I + ++ A +I +L +L P
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHG---ATEIRELPGMLLAP 66
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGV 139
G VN H H++ L +G+ADD+ LMTWL D IWP E ED T L E + G+
Sbjct: 67 GLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGI 126
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199
TCF++ + + V G+RA + +D P A R + + I+ L+
Sbjct: 127 TCFSDMYF-YPQAICGVVHDSGVRAQVAIPVLD----FPIPGA-RDSAEAIRQGMALFDD 180
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259
H RIRI FG +D L + + E I MHV E +E + M+
Sbjct: 181 LKH--HPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMER--- 235
Query: 260 DHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPI 316
+G + L ++ L + H V++ ++ +L V HCP S +++ GF P+
Sbjct: 236 -NGERPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVETNSSVIHCPESNLKLASGFCPV 294
Query: 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
+++ A + V++GTDGA SNN + ++ E A+L+ K AL A LRM
Sbjct: 295 EKLWQAGVNVAIGTDGAASNNDLDLLGETRTAALLAKAV------YGQATALDAHRALRM 348
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMC 436
AT+NGA+++ + IGSLEAGK AD+V D PV+D ++ L+Y + V V
Sbjct: 349 ATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVRHVWV 408
Query: 437 NGQWVMKNKKIL 448
G+ ++ + ++L
Sbjct: 409 GGRQLLDDGRLL 420
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 463 bits (1195), Expect = e-162
Identities = 122/431 (28%), Positives = 214/431 (49%), Gaps = 25/431 (5%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
I+ I+T++ + V N + + +I AI +AD AD+ ++L +L+PG
Sbjct: 9 IISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLE---ADERLELPDHVLMPG 65
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGVT 140
+N H H++ L +G+ADD LM WL + IWP E +D + +LL E+I G T
Sbjct: 66 LINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTT 125
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
+ + + +A+A G+R + S ++ P ++A DD I K + +
Sbjct: 126 TINDMYF-YNAAVARAGLASGMRTFVGCSILE----FPTNYA-SNADDYIA--KGMAERS 177
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
+ + +D + +A + IH H+ E E +
Sbjct: 178 QFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVKE---- 233
Query: 261 HG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIK 317
HG + L ++ L L++AH V +N E+ L +R G+ +H PAS M++ G +P+
Sbjct: 234 HGQRPLARLQRLGLLSPRLVAAHMVHLNDAEVELAARHGLSTAHNPASNMKLASGISPVS 293
Query: 318 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377
+++ A + V +GTDGA SNN++ ++ E LA+L+ K T DP ++PA +RMA
Sbjct: 294 KLMDAGVAVGIGTDGAASNNKLDMLAETRLAALLAKVG------TLDPTSVPAAAAIRMA 347
Query: 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCN 437
T+NGA+++ + +GS++ GK+AD++ +D P D I+ +VY E V V
Sbjct: 348 TLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPAFDPISHVVYAAGREQVSHVWVK 407
Query: 438 GQWVMKNKKIL 448
G+ +M+ +K+
Sbjct: 408 GRALMRERKLT 418
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 453 bits (1167), Expect = e-158
Identities = 113/429 (26%), Positives = 191/429 (44%), Gaps = 45/429 (10%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
MI+ N +I+ G V + IK + Q +DL ++++P
Sbjct: 1 MIIGNCLILKDFS--SEPFWGAVEIENGTIKRVLQGE---------VKVDLDLSGKLVMP 49
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L +E+ G+
Sbjct: 50 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIA 109
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
F + H +AKAV G+RA L + +D ++ +LY +
Sbjct: 110 GFVDMYF-HEEWIAKAVRDFGMRALLTRGLVDSNG---------DDGGRLEENLKLYNE- 158
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
+ +GRI + FG ++ L D A+ + +H+ E E
Sbjct: 159 WNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEY--------- 209
Query: 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEM 319
+ + I + ++AH V + G+L VSH PAS +++ G AP++ M
Sbjct: 210 --DLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRM 267
Query: 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 379
+ + V+LGTDGA SNN +++ EM LASL+ K + +P L T L+M T
Sbjct: 268 IEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRNLDVNTCLKMVTY 319
Query: 380 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 439
+GA+++ + G +E G AD+VV+D M PV + LV+ V + M G+
Sbjct: 320 DGAQAMGF--KSGKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSG-EVFATMVAGK 376
Query: 440 WVMKNKKIL 448
W+ + +
Sbjct: 377 WIYFDGEYP 385
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 454 bits (1169), Expect = e-158
Identities = 108/450 (24%), Positives = 183/450 (40%), Gaps = 35/450 (7%)
Query: 21 MIL-HNA-VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
MIL ++T D + R + + + +I A+G+ + ID + I
Sbjct: 1 MILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRS-----VSRTIDGRGMIA 55
Query: 79 LPGFVNTHVHTSQQLAKGIA--DDVDLMTWLHDRI-----WPYESNMTEEDSYISTLLCG 131
LPG +N+H H + + I + V + +WL + W + +
Sbjct: 56 LPGLINSHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVL 115
Query: 132 IELIHSGVTCFAE--------AGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPAS 180
+E + G+T A+ ++ +A LG+R +S+M G+ G
Sbjct: 116 LESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDD 175
Query: 181 WAVRTTDDCIQSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239
V D +Q L ++H G +RI G + L MA ++ +
Sbjct: 176 LFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRL 235
Query: 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299
H H E FL+K + + + AH V EI + AGV
Sbjct: 236 HTHFYEPLDAGMSD---HLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVA 292
Query: 300 VSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVF 358
++H A +RM G API+E L A I V GT G+ SN+ +++ ++ LA+L ++
Sbjct: 293 IAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALAHRPA--- 349
Query: 359 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDR 418
+ L A +LRMAT A+ L D+G LE G+ AD+ V VHD
Sbjct: 350 -DPNEPEKWLSARELLRMATRGSAE-CLGRPDLGVLEEGRAADIACWRLDGVDRVGVHDP 407
Query: 419 ITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448
L+ ++ V+ NGQ +++N++ +
Sbjct: 408 AIGLIMTGLSDRASLVVVNGQVLVENERPV 437
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 447 bits (1152), Expect = e-155
Identities = 109/470 (23%), Positives = 191/470 (40%), Gaps = 43/470 (9%)
Query: 11 SSGSLGSSSTMILHNAVIVTMDK-----ESRVFRNGGVFVVQDRIKAIGQSADILQQFSQ 65
S + + + ++ NA + + + +V D I AIG A +
Sbjct: 2 SLTTYDTQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP------R 55
Query: 66 MADQIIDLQSQILLPGFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDS 123
+ I+D ++ P +VNTH H Q L KG D L WL + + + E
Sbjct: 56 PGETIVDATDCVIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRF 115
Query: 124 YISTLLCGIELIHSGVTCFAE--------AGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175
++ + IEL SG A+ + + + E LGLR L++
Sbjct: 116 RLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTR 175
Query: 176 ----GLPASWAVRTTDDCIQSQKELYAKHHHAADGR-IRIWFGIRQIM-NATDRLLLETR 229
LP + T D + + L A++H A+ R+ ++ + + R + ET
Sbjct: 176 QLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETA 235
Query: 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNH 287
+AR +H H++E +G V F + ++L +++ AH V V+
Sbjct: 236 AVARRLGLRMHSHLSETVGYQDSAYSM----YGKSPVAFCGEHDWLGSDVWYAHLVKVDA 291
Query: 288 TEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY 346
EI LL++ G V+HCP S R+ G P++EM A + VS+G DGA SN ++ E++
Sbjct: 292 DEIALLAQTGTGVAHCPQSNGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISEVH 351
Query: 347 LASLINKGR--------EVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 398
+ L + R + A V+ T GA+ V+ +++G + G
Sbjct: 352 MTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGAR-VMGLDEVGKVAVGY 410
Query: 399 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448
AD+ V +HD V +V+++ G+ V+ + I
Sbjct: 411 AADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIE 460
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 404 bits (1040), Expect = e-139
Identities = 80/440 (18%), Positives = 156/440 (35%), Gaps = 46/440 (10%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
I+ I+T + ++ V +I+AI ++++++ + ++ +LLPG
Sbjct: 3 IIKPFAILTPQ---TIIQDKAV-AFDKKIEAIDTVENLIKKYP--NAAVEHDENSLLLPG 56
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
F N H+H K D + WL+ I E + D +I +G T
Sbjct: 57 FANPHLHLEFSANKATLQYGDFIPWLYSVIRHREDLLPLCD-GACLEQTLSSIIQTGTTA 115
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHH 201
E +A L+ + T D S E + +
Sbjct: 116 IGAIS--SYGEDLQACIDSALKVVYFNEVIGSNA--------ATADVMYASFLERFHQSK 165
Query: 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT----- 256
+ R + I + L D+A+++ + + +H E E + +
Sbjct: 166 KHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFA 225
Query: 257 -----RKVDHGTVTFLDKI--EFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309
V F + + L H VW N EI ++ + HCP S
Sbjct: 226 KFFKEFLNQTRPVNDTKSFLELFKELHTLFVHMVWANEEEIQTIASYNAHIIHCPISNRL 285
Query: 310 M-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 368
+ G ++++ I ++ TDG SN +++ +E+ A ++ A
Sbjct: 286 LGNGVLDLEKI--KSIPYAIATDGLSSNYSLNMYEELKAALFVHPN---------KEATT 334
Query: 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRT 428
A+ ++ AT G ++ + + G + GK ADM ++D + V D ++ T
Sbjct: 335 FAKELIIRATKAGYDALGF--EGGEIAVGKDADMQLID-LPEGLTNVEDLYLHVILH--T 389
Query: 429 ENVVSVMCNGQWVMKNKKIL 448
V G+ ++ + L
Sbjct: 390 TKPKKVYIQGEEHVREAENL 409
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-108
Identities = 88/434 (20%), Positives = 169/434 (38%), Gaps = 23/434 (5%)
Query: 22 ILHNAVIVTMDKES-RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
I +I T + + ++ + V+ +I ++ + + + IID ++ I++P
Sbjct: 12 IFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYK----GNPIIDFRNNIIIP 67
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYISTLLCGIELIHSGV 139
G + H H SQ GI D +L+ WL++ +P E+ D + + +LI +G
Sbjct: 68 GMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGT 127
Query: 140 TCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKEL 196
T A H E+ + G+ A + + MD P + +E+
Sbjct: 128 TRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNC--PDYLT-ENYITSLNDTEEI 184
Query: 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
K+ ++ R + + ++ L+ ++ +++ + H++E E VV
Sbjct: 185 ILKYKD-KSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSL 243
Query: 257 RKVDHGTVTFLDKIEFLQNN-LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFA 314
K + DK N L AH + + EI L+ R V + HCP S + G
Sbjct: 244 HKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGMM 303
Query: 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374
P+++ L+ I V LG+D + + S+ + A +K + + L
Sbjct: 304 PVRKYLNLGINVVLGSDISAGHT-CSLFKVIAYAIQNSKIKWQESGK--KDMFLSTSEAF 360
Query: 375 RMATINGAKSVLWDNDIGSLEAGKKADMVVVDP--FSWPMVPVHDRITSLVYCMRTENVV 432
MAT G +GS E G D +V++ + +R+ +Y N++
Sbjct: 361 YMATKKGGSFF---GKVGSFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIM 417
Query: 433 SVMCNGQWVMKNKK 446
G + K
Sbjct: 418 KRYVCGNEIFGPKF 431
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A Length = 476 | Back alignment and structure |
|---|
Score = 320 bits (822), Expect = e-105
Identities = 91/453 (20%), Positives = 182/453 (40%), Gaps = 32/453 (7%)
Query: 17 SSSTMILHNAVIVTMDKES-RVFRNGGVFVVQDR-IKAIGQSAD---ILQQFSQMADQII 71
I + + V R+ + V I + +++ + +++ +I
Sbjct: 29 PPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIR 88
Query: 72 DL-QSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYISTLL 129
+L + +PG V+TH+H SQ G + D+ L+ WL +P E D +
Sbjct: 89 ELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTR 148
Query: 130 CGIELIHSGVTC---FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT 186
+ +G T FA +A + G RA + + MD + P TT
Sbjct: 149 VVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPE--YKETT 206
Query: 187 DDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246
++ I+ + ++ R++ R ++ ++ L+ E ++A+ I H++E
Sbjct: 207 EESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISEN 266
Query: 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 306
E + V + + DK L N + AH +++ E+ + G ++HCP S
Sbjct: 267 RDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNS 326
Query: 307 AMRML-GFAPIKEMLHADICVSLGTD--GAPSNNRMSIVDEMYLASLINKGREVFANGTT 363
+ + GF + E+L ++ + LGTD G S + + + + S I
Sbjct: 327 NLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLI------NKV 380
Query: 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP-----------FSWPM 412
+ +L + V R+AT+ G++++ D +IG+ E GK+ D ++++P +
Sbjct: 381 NEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFG 440
Query: 413 VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445
I +Y N+ V G+ V+
Sbjct: 441 DISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFS 473
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Length = 453 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-104
Identities = 77/449 (17%), Positives = 154/449 (34%), Gaps = 42/449 (9%)
Query: 30 TMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89
+ E + G V+ I A G A+I + +LPG N H H
Sbjct: 3 AIFAERALLPEGWARNVRFEISADGVLAEIRPDA---NADGAERLGGAVLPGMPNLHSHA 59
Query: 90 SQQLAKGIAD-----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE 144
Q+ G+A+ + TW + ++ + ++ E + IE++ +G T AE
Sbjct: 60 FQRAMAGLAEVAGNPNDSFWTWR-ELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAE 118
Query: 145 --------------AGGQHVSEMAKAVELLGLRACLVQSTMDCGE--GLPASWAVRTTDD 188
+ +++A G+ L+ G PAS R +
Sbjct: 119 FHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFIN 178
Query: 189 CIQSQKELYAKHHHAADG-RIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247
++ EL + + + + T + + + +H+H+AE
Sbjct: 179 GSEAYLELLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAGHD-DLPVHIHIAEQQ 237
Query: 248 YENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 305
E G + +L + + H + E+ ++R+G C +
Sbjct: 238 KEVDDCQAW----SGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLS 293
Query: 306 SAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 363
+ L G P + L + +G+D S + + + + + +
Sbjct: 294 TEAN-LGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRL--YR 350
Query: 364 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDR--ITS 421
D + T+ A GA+ L IGSL G++AD++V+D + +
Sbjct: 351 DDQPMIGRTLYDAALAGGAQ-ALGQ-PIGSLAVGRRADLLVLDGNDPYLASAEGDALLNR 408
Query: 422 LVYCMRTENVVSVMCNGQWVMKNKKILLL 450
++ V VM G+WV+++ +
Sbjct: 409 WLFAGGDRQVRDVMVAGRWVVRDGRHAGE 437
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 312 bits (802), Expect = e-103
Identities = 67/429 (15%), Positives = 128/429 (29%), Gaps = 62/429 (14%)
Query: 3 TNSSGGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQ 62
T S + + + + +L V+ T GGV VV + + A G ++ +Q
Sbjct: 21 TFSEATTPDALTPDAHTPRLLTCDVLYTGM--GGAQSPGGVVVVGETVAAAGHPDELRRQ 78
Query: 63 FSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED 122
+ + ++ P VN H H + A + W+ + +
Sbjct: 79 Y---PHAAEERAGAVIAPPPVNAHTHLDMSAYEFQA--LPYFQWIPEVVIRGRHLRGVA- 132
Query: 123 SYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182
+ L G + M + L L ++
Sbjct: 133 ---AAQAGADTLTRLGAGGVGDIVW-APEVMDALLAREDLSGTLYFEVLN--------PF 180
Query: 183 VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 242
D+ + + + +R+ + RL+ D A + +H
Sbjct: 181 PDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIH 240
Query: 243 VAEIPYENQVVMDTRKVDHGT------------------------VTFLDKIEFLQNNLL 278
VAE P E ++ V +LD++ L
Sbjct: 241 VAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPT 300
Query: 279 SAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337
H V V +I ++RAG V CP S + G A + V+LGTD S
Sbjct: 301 LVHMVNVTPDDIARVARAGCAVVTCPRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGE 360
Query: 338 RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK----SVLWDNDIGS 393
+++ +E+ A + L ++R A G + + +
Sbjct: 361 TLNVREEVTFARQLYP-------------GLDPRVLVRAAVKGGQRVVGGRTPFLRRGET 407
Query: 394 LEAGKKADM 402
+ G + ++
Sbjct: 408 WQEGFRWEL 416
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 312 bits (802), Expect = e-102
Identities = 85/455 (18%), Positives = 164/455 (36%), Gaps = 45/455 (9%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
I +R ++G + V IKA G I +I ++ +I++PGF++ H+
Sbjct: 23 IGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHP--GVEITHIKDRIIVPGFIDGHI 80
Query: 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYISTLLCGIELIHSGVTCFAEAG 146
H Q G + L+ WL I+P E + + + L+ +G T
Sbjct: 81 HLPQTRVLGAYGE-QLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFT 139
Query: 147 ---GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHA 203
E+ + +R + +D PA + T ++ + K L A++H
Sbjct: 140 SSSPVATEELFEEASRRNMRVIAGLTGIDRN--APAEFI-DTPENFYRDSKRLIAQYHD- 195
Query: 204 ADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHG 262
GR R A+ LL + + E ++ H++E P E V+
Sbjct: 196 -KGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHPDCQD 254
Query: 263 TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLH 321
+ +K + + H V++++ E +S+ G V CP S + + G +
Sbjct: 255 YLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFLGSGLFRLGRATD 314
Query: 322 AD--ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT----------DPAALP 369
+ + +S GTD N S++ + A + +G+ + L
Sbjct: 315 PEHRVKMSFGTDVGGGNR-FSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLS 373
Query: 370 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV---------------- 413
T+ GA+ + D+ +G+ E GK+AD V +DP +
Sbjct: 374 PYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRT 433
Query: 414 --PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446
+ +++ V G+ + K +
Sbjct: 434 VDEAASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458 | Back alignment and structure |
|---|
Score = 305 bits (783), Expect = 1e-99
Identities = 72/467 (15%), Positives = 135/467 (28%), Gaps = 56/467 (11%)
Query: 13 GSLGSSSTM-ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQII 71
GS+ S+ +H + D N + + I +I
Sbjct: 3 GSMSDQSSQHFIHARQALLPD---GWAENVRIGIAGGVICSIETGV---------LAGPD 50
Query: 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDV-----DLMTWLHDRIWPYESNMTEEDSYIS 126
D + +++ G N H H Q G+A+ +W ++ + MT E +
Sbjct: 51 DERQSVVVAGMANLHSHAFQYGMAGLAERRGPSADSFWSWRE-IMYKFALTMTPEQAEAV 109
Query: 127 TLLCGIELIHSGVTCFAE--------------AGGQHVSEMAKAVELLGLRACLVQSTMD 172
L ++++ +G T E + +A A G+ L+
Sbjct: 110 ALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLPVFYA 169
Query: 173 CGEGLPASWAVRTTDDCIQSQKELYAKHH-----HAADGRIRIWFGIRQIMNATDRLLLE 227
G + A I + + + T L
Sbjct: 170 HS-GFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDS 228
Query: 228 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWV 285
+ + +H+HVAE E + + G V +L + + H +
Sbjct: 229 VTQLLPD--APVHIHVAEQVKEVEDCIAW----SGKRPVEWLLDHQDVTARWCLIHATHM 282
Query: 286 NHTEIGLLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVD 343
+ E +++AG CP + L G E A +G+D I D
Sbjct: 283 SDEETKHMAKAGAIAGLCPVTEAN-LGDGTFNATEFAAAGGKFGIGSDSNVLIG---IGD 338
Query: 344 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 403
E+ + N + A + G ++ L+ G AD V
Sbjct: 339 ELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR--PEDGLKKGASADFV 396
Query: 404 VVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450
+D P + ++ R +V V G ++ + L
Sbjct: 397 SLDVERLPHAKGDVVLDGWIFAGRA-HVCDVWVRGVKQVEGGRHRLR 442
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 4e-75
Identities = 80/459 (17%), Positives = 149/459 (32%), Gaps = 72/459 (15%)
Query: 19 STMILHNAVIVTMDKES----------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMAD 68
T++++ ++TM+ V + V + + +I GQ AD
Sbjct: 6 DTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYE---AD 62
Query: 69 QIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYE----------SNM 118
+IID +++ PG V+ H H ++ ++ L + I
Sbjct: 63 EIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAA 122
Query: 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178
+EE+ ++ G T G + + + +L + +D
Sbjct: 123 SEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVDLVSTFM 182
Query: 179 ASWAV-----RTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR 233
+ A+ DD + L + F + + + A
Sbjct: 183 GAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFTETGVFTVSQSRRYLQK--AA 240
Query: 234 EFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLL 293
E G+ +H EI + V+ H V + I L
Sbjct: 241 EAGFGLKIHADEIDPLGGAEL---AGKLKAVSA-------------DHLVGTSDEGIKKL 284
Query: 294 SRAGVKVSHCPASAM--RMLGFAPIKEMLHADICVSLGTDGAPSNNRM-SIVDEMYLASL 350
+ AG P + +A + M+ +CVSL TD P ++ +I M +A+L
Sbjct: 285 AEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAAL 344
Query: 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 410
K + AE + T+N A ++ + G L+AG+ AD+V+
Sbjct: 345 HLK--------------MTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQA--- 387
Query: 411 PMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449
+ Y +V VM NG V+ + +L
Sbjct: 388 ------PNYMYIPYHYGVNHVHQVMKNGTIVVNREGAIL 420
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 2e-62
Identities = 81/458 (17%), Positives = 159/458 (34%), Gaps = 64/458 (13%)
Query: 6 SGGGSSSGSLGSSSTMILHNAVIVTMDKESR---VFRNGGVFVVQDRIKAIGQSADILQQ 62
G S+ G+ ++T + NA + T++ N + V RI G +D+
Sbjct: 2 PGNNSAKGTATGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDD 61
Query: 63 FSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYE------- 115
S AD+ D + + P ++ H H + + ++ L ++ I
Sbjct: 62 LST-ADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSV 120
Query: 116 ---SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVS-----EMAKAVELLG-LRACL 166
+++E L L+ GV+ G + +M + L LR
Sbjct: 121 RDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRLETLRPVR 180
Query: 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 226
+ ++ PA + R D A+G G + + + + +
Sbjct: 181 IVTSYLAAHATPADYKGRNADYITDVVLPGL--EKAHAEGLADAVDGFCEGIAFSVKEID 238
Query: 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286
A++ + +H ++ + G N L + H +++
Sbjct: 239 RVFAAAQQRGLPVKLHAEQLS------------NLGGAELAASY----NALSADHLEYLD 282
Query: 287 HTEIGLLSRAGVKVSHCPASAM--RMLGFAPIKEMLHADICVSLGTDGAPSNNRM-SIVD 343
T L++AG P + R P++ + A ++L TD P + + S++
Sbjct: 283 ETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLL 342
Query: 344 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 403
M + + + + + E L T N AK++ + G+LEAGK AD
Sbjct: 343 TMNMGATLFR--------------MTVEECLTATTRNAAKALGLLAETGTLEAGKSADFA 388
Query: 404 VVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
+ D +R LVY + + + + GQ V
Sbjct: 389 IWDI---------ERPAELVYRIGFNPLHARIFKGQKV 417
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 63/456 (13%), Positives = 139/456 (30%), Gaps = 70/456 (15%)
Query: 18 SSTMILHNAVIVTMDKESR---VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
+ + N T+ + + + V + RI A+ D+ + D++
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPY---PAHWQDMK 60
Query: 75 SQILLPGFVNTHVHTSQ---------QLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDS 123
+++ PG ++ H H KG+ A+ + +E+
Sbjct: 61 GKLVTPGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGII-STVRATRAASEDQL 119
Query: 124 YISTLLCGIELIHSGVTCFAEAGGQHVS-----EMAKAVELLGLRACLVQSTMDCGEG-L 177
+ L LI GVT G ++ +M + LG + T +
Sbjct: 120 FELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEALPIRVKTTLLAAHAV 179
Query: 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 237
P + +E+ A F + + + + A ++
Sbjct: 180 PPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVFC--EHIGFSLAQTEQVYLAADQYGL 237
Query: 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA-HTVWVNHTEIGLLSRA 296
+ H+ ++ + LS H +++ I L+
Sbjct: 238 AVKGHMDQLSNLGGSTL-----------------AANFGALSVDHLEYLDPEGIQALAHR 280
Query: 297 GVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPSNNRM-SIVDEMYLASLINK 353
GV + P + + P+ + A + +++ +D P + S+ M +A +
Sbjct: 281 GVVATLLPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLFG 340
Query: 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV 413
L + T + A+++ +G L G AD +V +
Sbjct: 341 --------------LTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWNC------ 380
Query: 414 PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449
L Y + + +VS + NG+ + +
Sbjct: 381 ---GHPAELSYLIGVDQLVSRVVNGEETLHGEGHHH 413
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-41
Identities = 69/439 (15%), Positives = 133/439 (30%), Gaps = 54/439 (12%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA + D + +V DRI I + ID + ++ P
Sbjct: 7 LIIRNAYLSEKDSVYDIG------IVGDRIIKIEAKIE------GTVKDEIDAKGNLVSP 54
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIW------PYESNMTEEDSYISTLLCGIEL 134
GFV+ H H + + + R Y N T E+ +
Sbjct: 55 GFVDAHTHMDKSFTSTGERLPKFWSRPYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQ 114
Query: 135 IHSGVTCFAEAGGQHVSEMAKAVE-LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ 193
+ G KAVE +L + L S +
Sbjct: 115 VLHGTLYTRTHVDVDSVAKTKAVEAVLEAKEELKDLIDIQVVAFAQSGFFVDLES----- 169
Query: 194 KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253
E + + N + L +A+E+ I H+ +I
Sbjct: 170 -ESLIRKSLDMGCDLVGGVDPATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVGVYS 228
Query: 254 MDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGF 313
++ + ++ + I L +G+K C +S
Sbjct: 229 INRLAQKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSSTP---PT 285
Query: 314 APIKEMLHADICVSLGTDGAPSNN----RMSIVDEMYLASLINKGREVFANGTTDPAALP 369
P+ ++L A I + +D +V + + +
Sbjct: 286 MPVIKLLEAGINLGCASDNIRDFWVPFGNGDMVQGALIETQRLE----------LKTNRD 335
Query: 370 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 429
+ +M T GA+ + + + G +E GKKAD+VV++ S +
Sbjct: 336 LGLIWKMITSEGARVLGIEKNYG-IEVGKKADLVVLNSLSPQWAII-----------DQA 383
Query: 430 NVVSVMCNGQWVMKNKKIL 448
+ V+ NG+ ++K++ I+
Sbjct: 384 KRLCVIKNGRIIVKDEVIV 402
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 8e-40
Identities = 66/461 (14%), Positives = 147/461 (31%), Gaps = 76/461 (16%)
Query: 13 GSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIID 72
S+ +++ + NA + + ++ G +I AI + ++ + +D
Sbjct: 2 SSMANNALQTIINARLPGEEGLWQIHLQDG------KISAIDAQSGVMPI----TENSLD 51
Query: 73 LQSQILLPGFVNTHVHTSQQLAKGIAD---DVDLMTWLHDRIWPYESNMTEEDSYISTLL 129
+ +++P FV H+H G + L + +R ++ +T +D
Sbjct: 52 AEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGTLFEGI-ERWAERKALLTHDDVKQRAWQ 110
Query: 130 CGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT 186
I +G+ HV A++ + V +D + +
Sbjct: 111 TLKWQIANGIQHVRT----HVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSY 166
Query: 187 DDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246
+ + L + + L +T +A+++ I +H EI
Sbjct: 167 PNG----EALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEI 222
Query: 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE-------IGLLSRAGVK 299
E ++ TV L E + + ++HT ++ LL +G+
Sbjct: 223 DDEQSRFVE-------TVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN 275
Query: 300 VSHCPASAMRML----------GFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEM 345
P + + G +KEML + I V G DG +++ +
Sbjct: 276 FVANPLVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVL 335
Query: 346 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 405
++ + + L + T + A+ L D G + AG A+++++
Sbjct: 336 HMGLHVCQLM----------GYGQINDGLNLITHHSAR-TLNLQDYG-IAAGNSANLIIL 383
Query: 406 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446
+ R V + G+ + +
Sbjct: 384 PAENGFDALR-----------RQVPVRYSVRGGKVIASTQP 413
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 2e-31
Identities = 69/437 (15%), Positives = 139/437 (31%), Gaps = 64/437 (14%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQ 76
+ ++L N V + + + + D +I A+G + Q ID +
Sbjct: 14 QAPILLTNVKPVGFG-KGASQSSTDILIGGDGKIAAVGSALQAPA-----DTQRIDAKGA 67
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
+ PG+V+ HVH IW ++++ S L+
Sbjct: 68 FISPGWVDLHVH----------------------IWHGGTDISIRPSECGAERGVTTLVD 105
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDC----IQS 192
+G A G + + E ++A L GL A V D +
Sbjct: 106 AGSAGEANFHGFREYIIEPSRE--RIKAFLNL----GSIGLVACNRVPELRDIKDIDLDR 159
Query: 193 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252
E YA++ G +++ + + + +A+ K + +HV E P
Sbjct: 160 ILECYAENSEHIVG-LKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDE 218
Query: 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLG 312
V++ + G V ++++ ++ + G+++ A
Sbjct: 219 VLE--ILGPGDVVTHCFNGKSGSSIMEDEDLFNLAER---CAGEGIRLDIGHGGASF--S 271
Query: 313 FAPIKEMLHADIC-VSLGTDGAPSNNRMSIVDEMYLAS-LINKGREVFANGTTDPAALPA 370
F + + + S+ TD + + D S L++ P
Sbjct: 272 FKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDM-------------PF 318
Query: 371 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTEN 430
E V+ T N A + D L+ G++AD V D + D + R
Sbjct: 319 ENVVEAVTRNPASVIRLD-MENRLDVGQRADFTVFDLVDADLEAT-DSNGDVSRLKRLFE 376
Query: 431 VVSVMCNGQWVMKNKKI 447
+ + + ++ I
Sbjct: 377 PRYAVIGAEAIAASRYI 393
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 63/433 (14%), Positives = 120/433 (27%), Gaps = 64/433 (14%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
S T+I + IV+ D +S V + + V I AIG + IID
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAG---DATIIDAAGST 58
Query: 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
+ PG ++THVH + +H
Sbjct: 59 VTPGLLDTHVH-------------------------VSGGDYAPRQKTMDFI--SSALHG 91
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGLRA---CLVQSTMDCGEGLPASWAVRTTDDCIQSQK 194
GVT AG H + + G +A L +S + + +++
Sbjct: 92 GVTTMISAGSPH--FPGRPKDAAGTKALAITLSKSYYNARPAGVKVHGGAVILEKGLTEE 149
Query: 195 ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254
+ + G I N + A + + MH +
Sbjct: 150 DFIEMKKEGVWIVGEVGLGT--IKN--PEDAAPMVEWAHKHGFKVQMHTGGTSIPGSSTV 205
Query: 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR-MLGF 313
V + I T ++ + +
Sbjct: 206 TADDVIKTKPDVVSHIN-------GGPTAISVQEVDRIMDETDFAMEIVQCGNPKIADYV 258
Query: 314 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 373
A V G D ++ L ++ + + E
Sbjct: 259 ARRAAEKGQLGRVIFGNDAPSGTG---LIPLGILRNMCQIASM---------SDIDPEVA 306
Query: 374 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVS 433
+ MAT N ++ + G + GK+AD++++D P+ V + + +
Sbjct: 307 VCMATGNSTA--VYGLNTGVIAPGKEADLIIMDT---PLGSVAEDAMGAIAAGDIPGISV 361
Query: 434 VMCNGQWVMKNKK 446
V+ +G+ V+ +
Sbjct: 362 VLIDGEAVVTKSR 374
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 6e-20
Identities = 62/424 (14%), Positives = 119/424 (28%), Gaps = 69/424 (16%)
Query: 15 LGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
+ S ++ NA + + G V V +++ +G++ + +I+DL
Sbjct: 1 MSLSVKILFKNATVFPITSRPF---KGDVLVSNGKVEKVGENIEDP------DAEIVDLT 51
Query: 75 SQILLPGFVNTHVH--TSQQLAKGIADDVDLMT-------WLHDRIWPYESNMTEEDSYI 125
+ L PGFV+ H H ++ D + T D P + + +
Sbjct: 52 GKFLFPGFVDAHSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGG 111
Query: 126 ST---LLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182
T ++ G G + V E ++
Sbjct: 112 VTSVMIVPGSANPVGGQGSVIKFRSIIVEECI-------VKDPAGLKMAFGENPKRVYGE 164
Query: 183 VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG--IH 240
+ T + + ++ ++ L+ +
Sbjct: 165 RKQTPSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVGEMVLRKKIPAR 224
Query: 241 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 300
MH + + NL+ H +L+ + V
Sbjct: 225 MHAHRADDILTAIRIAEEFGF--------------NLVIEHGTEAYKI-SKVLAEKKIPV 269
Query: 301 SHCPASAMRM------LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 354
P R L I ++L + ++L D +
Sbjct: 270 VVGPLLTFRTKLELKDLTMETIAKLLKDGVLIALMCDHPVIPLE-------FA------- 315
Query: 355 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPM 412
T E +L++ T+N AK + ++ IGS+E GK AD+VV PF
Sbjct: 316 --TVQAATAMRYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFDMKS 373
Query: 413 VPVH 416
V
Sbjct: 374 VVER 377
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 4e-19
Identities = 87/456 (19%), Positives = 153/456 (33%), Gaps = 68/456 (14%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQ 76
L +A IVT DK + RN + V D RI+ + S + +D +
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPA---EYHYLDGTGK 67
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
I++PG +N H H Q K + + S + + + L+
Sbjct: 68 IVMPGLINAHTHLFSQ-GKPLNPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLE 126
Query: 137 SGVTCFAEAGGQHVSEMA--KAVE---LLG--LRACLVQSTMDCGEGLP-ASWAVRTTDD 188
SGVT G + ++ +LG + A + G G P + T ++
Sbjct: 127 SGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEE 186
Query: 189 CIQSQKELYAKHHH----AADGRIRIWFGIRQIMNA--TDRLLLETRDMAREFKTGIHMH 242
+ + + AA G + I + + + + D A ++ + H
Sbjct: 187 ARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAH 246
Query: 243 VAEIPYENQVV---MDTRKVDHGTVTFLDK--IE-FLQNNLLSAHTVWVNHTEIGL--LS 294
+ + +DT ++HG+ LD I F N + T L+
Sbjct: 247 AQSPEGVRRSLLAGVDT--IEHGS--VLDDELIGMFRHNPNALRGYSALIPTLSAGLPLT 302
Query: 295 RAGVKVSHCPASAMRML------GFAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYL 347
G V+ + + ++ A + + +GTD G + + E+ L
Sbjct: 303 LLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELEL 362
Query: 348 ASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV-- 405
V G L AT A + D + GSLE GK AD++V+
Sbjct: 363 L--------VAYAG------FSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNA 408
Query: 406 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
+P D + +L E+ V+ G V
Sbjct: 409 NPL--------DDLRAL------EHPALVIAAGHPV 430
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 8e-17
Identities = 74/472 (15%), Positives = 153/472 (32%), Gaps = 100/472 (21%)
Query: 14 SLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIID 72
SL S ++H ++ D +S ++ V+ I I + + ID
Sbjct: 2 SLDVDSKTLIHAGKLI--DGKSDQVQSRISIVIDGNIISDIKKGFISSND----FEDYID 55
Query: 73 LQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI 132
L+ +LPG ++ HVH + + E I
Sbjct: 56 LRDHTVLPGLMDMHVH---------------FGQEYQSKAQAPIKVEREMQAILATQHAY 100
Query: 133 ELIHSGVTCFAEAGGQHVSEMA--KAVE---LLG--LRAC--------------LVQSTM 171
SG T + G + ++ A+ L G + A ++
Sbjct: 101 VTFKSGFTTVRQVGDSGLVAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVD 160
Query: 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHH----AADGRIRIWFGIRQIMNATDRLLLE 227
D +P V + + ++ Y G + Q T +
Sbjct: 161 DYDYPVPEQGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDA 220
Query: 228 TRDMAREFKTGIHMHVAEIPYENQVV---MDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 284
A+++ + +H + + +D+ ++HGT F+D E + L+ + +
Sbjct: 221 VVSAAKDYGMWVAVHAHGAEGMKRAIKAGVDS--IEHGT--FMDL-EAMD--LMIENGTY 273
Query: 285 VN---HTEIGLLSRAGVKVSHCPASAMRMLGFAP-----IKEMLHADICVSLGTD-GAPS 335
+ ++ + + P ++ + ++ GTD G
Sbjct: 274 YVPTISAGEFVAEKSKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGVQK 333
Query: 336 NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 395
+ E ++ G +PA ++ AT+ AK + ++ +GS+E
Sbjct: 334 HGTNW--KEFVY--MVENG-------------MPAMKAIQSATMETAKLLRIEDKLGSIE 376
Query: 396 AGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445
+GK AD++ V +P + I+ L ENV V+ +G + +
Sbjct: 377 SGKLADLIAVKGNPI--------EDISVL------ENVDVVIKDGL-LYEGH 413
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 70/435 (16%), Positives = 134/435 (30%), Gaps = 100/435 (22%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ +V D + R + +V I ++ + A A Q+ID + P
Sbjct: 37 VLITGGTLV--DVVTGELRPADIGIVGALIASVHEPASRRD-----AAQVIDAGGAYVSP 89
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G ++TH+H ES+M +Y + ++ T
Sbjct: 90 GLIDTHMH-------------------------IESSMITPAAYAAAVVA-----RGVTT 119
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
+ V + + P V + + + A
Sbjct: 120 IVWDPHEFGNVHGVDGVRW--AAKAIENLPLRAILLAP--SCVPSAPGLERGGADFDAAI 175
Query: 201 HHAADGRIRIWFGIRQIMNAT-----DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255
I GI +IMN D + + + H + +
Sbjct: 176 LADLLSWPEIG-GIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFM 234
Query: 256 TRKV--DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGF 313
V DH V+ D + L+ L +H +
Sbjct: 235 AAGVSSDHELVSGEDLMAKLRAGLTIELRGSHDHLLPEFV-------------------- 274
Query: 314 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 373
A + + H V+L TD ++ ++ L ++ R + G L E
Sbjct: 275 AALNTLGHLPQTVTLCTDDVFPDD---LLQGGGLDDVV---RRLVRYG------LKPEWA 322
Query: 374 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVS 433
LR AT+N A+ L +D+G + AG++AD+VV + + +
Sbjct: 323 LRAATLNAAQ-RLGRSDLGLIAAGRRADIVVFEDLNGF------------------SARH 363
Query: 434 VMCNGQWVMKNKKIL 448
V+ +G+ V + ++L
Sbjct: 364 VLASGRAVAEGGRML 378
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 85/472 (18%), Positives = 159/472 (33%), Gaps = 102/472 (21%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S +T + N ++ D + + + + I+ + +ID++ +
Sbjct: 2 SLTTFLFRNGALLDPDHP-DLLQGFEILIEDGFIREVSDKPIKSS-----NAHVIDVKGK 55
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
++PG ++ HVH A + +L + + + ++
Sbjct: 56 TIMPGLIDLHVHVV-------AIEFNLPRVA---------TLPNVLVTLRAVPIMRAMLR 99
Query: 137 SGVTCFAEAGGQHVSEMAKAVE---LLG--LRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191
G T +AGG +AVE + G L + G P + + D
Sbjct: 100 RGFTTVRDAGGAGYP-FKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPC 158
Query: 192 SQKELYAKHHHAADG--------RIRIWFGIRQI--------MNATDRL---------LL 226
ADG R + G QI + TD + +
Sbjct: 159 GCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIR 218
Query: 227 ETRDMAREFKTGIHMHVAEIPYENQVV---MDTRKVDHGTVTFLDKIEFLQNNLLSAHTV 283
A+ T + H + V + T ++HG +D E + L++ H
Sbjct: 219 AIVAEAQGRGTYVLAHAYTPAAIARAVRCGVRT--IEHGN--LIDD-ETAR--LVAEHGA 271
Query: 284 WVNHTEIGL--LSRAGVKVSHCPASAMRMLGFAP-----IKEMLHADICVSLGTD-GAPS 335
+V T + L+ G K P S ++ I+ M A + + GTD +
Sbjct: 272 YVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEA 331
Query: 336 NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 395
S DE + A + PAE V+ ATI A+ + + +G +
Sbjct: 332 QRLQS--DEF----------RILAEVLS-----PAE-VIASATIVSAEVLGMQDKLGRIV 373
Query: 396 AGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445
G AD++VV +P + L+ + E++ VM +G+ + N+
Sbjct: 374 PGAHADVLVVDGNPL--------KSVDCLLG--QGEHIPLVMKDGR-LFVNE 414
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 1e-13
Identities = 57/430 (13%), Positives = 115/430 (26%), Gaps = 66/430 (15%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N V + + + +I A+ + + I +
Sbjct: 7 LLIKNGQTVNG-------MPVEIAIKEKKIAAVAATIS-----GSAKETIHLEPGTYVSA 54
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G+++ HVH + Y + + GVT
Sbjct: 55 GWIDDHVH---------------CFEKMALYYDYPDEIG---------------VKKGVT 84
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE-GLPASWAVRTTDDCIQSQKELYAK 199
+AG + + +L V ++ + G+ A + S + +
Sbjct: 85 TVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQ 144
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT-GIHMHVAEIPYENQVVMDT-R 257
I+ I + L + + +E + + +H+ P ++
Sbjct: 145 ELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALME 204
Query: 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIK 317
K D T F K +N +L T + GV + F +
Sbjct: 205 KGDVLTHCFNGK----ENGILDQATDKI-KDFAWQAYNKGVVFDIGHGTDSF--NFHVAE 257
Query: 318 EMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376
L S+ TD N V L ++ G ++
Sbjct: 258 TALREGMKAASISTDIYIRNRENGPV-----YDLATTMEKLRVVGY------DWPEIIEK 306
Query: 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMC 436
T A++ G+LE GK AD+ + + + D + +
Sbjct: 307 VTKAPAENFHLT-QKGTLEIGKDADLTIFTIQAEE-KTLTDSNGLTRVAKEQIRPIKTII 364
Query: 437 NGQWVMKNKK 446
GQ
Sbjct: 365 GGQIYDNEGH 374
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
L N I T + G+ + +R+ G S+ L+ +IIDL+ + ++P
Sbjct: 39 ALINGTIYTSFSPVKKVS--GLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPA 96
Query: 82 FVNTHVH 88
F ++H+H
Sbjct: 97 FFDSHLH 103
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 367 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPF 408
+ E L + T A+ L + D+G LE G +A+ +++ DP
Sbjct: 460 RVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPL 502
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+ ++++ + IVT E+ V +NG V + +I + + +I +
Sbjct: 2 AESLLIKDIAIVT---ENEVIKNGYVGINDGKISTVSTERPKEPY----SKEIQAPADSV 54
Query: 78 LLPGFVNTHVH 88
LLPG ++ H+H
Sbjct: 55 LLPGMIDIHIH 65
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 20/79 (25%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
+ + + N AK + + GS+ GK AD+V+V
Sbjct: 334 CSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVS--------------------S 373
Query: 428 TENVVSVMCNGQWVMKNKK 446
V+ +C G +K+
Sbjct: 374 DCEVILTICRGNIAFISKE 392
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-09
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILL 79
MIL+N I T+D + D I A+G + + IDL+ + +
Sbjct: 6 MILYNGKITTLDPS---QPEVSAIAITDGLITAVGGDELLNSATE--KTKKIDLKRKRAI 60
Query: 80 PGFVNTHVH 88
PG ++H+H
Sbjct: 61 PGLNDSHIH 69
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+S ++ + + D ++ + + +I IG+ +I +
Sbjct: 4 TSEDFLIKSKGYL--DIQTGEIIKADLLIRNGKIAEIGKINTK-------DATVISIPDL 54
Query: 77 ILLPGFVNTHVH 88
IL+PG +++HVH
Sbjct: 55 ILIPGLMDSHVH 66
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 366 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLV 423
+ ++ +TI A + +IG ++ G AD+V V +P I +L
Sbjct: 336 WGMTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGVIENPL--------ANIRTL- 385
Query: 424 YCMRTENVVSVMCNGQWVMKNK 445
E V VM G+ V K +
Sbjct: 386 -----EEVAFVMKEGK-VYKRE 401
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 31/129 (24%)
Query: 316 IKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374
++ +A + + G+D + S E + A L L
Sbjct: 308 LEIYANAGVKMGFGSDLLGEMHAFQS--GEF----------RIRAEV------LGNLEAL 349
Query: 375 RMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVV 432
R AT A+ V +G + G AD+VV+ +P + I + V
Sbjct: 350 RSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPL--------EDIGVVADE--GARVE 399
Query: 433 SVMCNGQWV 441
V+ G V
Sbjct: 400 YVLQRGTLV 408
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S + +L ++ +++ + + V + +RI + L Q ID++ +
Sbjct: 2 SLTITVLQGGNVLDLERG-VLLEHHHVVIDGERIVEVTDRPVDLP-----NAQAIDVRGK 55
Query: 77 ILLPGFVNTHVH 88
++PGF++ HVH
Sbjct: 56 TVMPGFIDCHVH 67
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 18 SSTM-ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S+ M L N I T + V V + D+I+A+ + ++DL
Sbjct: 1 SNAMYALTNCKIYT---GNDVLVKHAVIINGDKIEAVCPIESLPS-----EMNVVDLNGA 52
Query: 77 ILLPGFVNTHVH 88
L PGF++ ++
Sbjct: 53 NLSPGFIDLQLN 64
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 20/74 (27%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
+ + LRMAT+ AK++ D +G ++ G A++ V D
Sbjct: 326 IALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDR-------------DF----- 367
Query: 428 TENVVSVMCNGQWV 441
NV + + NGQ+
Sbjct: 368 --NVKATVVNGQYE 379
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 20/74 (27%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
+ + VLRMAT+ A+++ + +G+L AGK A++ P
Sbjct: 326 IALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP-------------DF----- 367
Query: 428 TENVVSVMCNGQWV 441
+ + NG V
Sbjct: 368 --KITKTIVNGNEV 379
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 23 LHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF 82
L I T + V + IK++ A++ + L IL PGF
Sbjct: 4 LTQGRIFT---GHEFLDDHAVVIADGLIKSVCPVAEL-----PPEIEQRSLNGAILSPGF 55
Query: 83 VNTHVH 88
++ ++
Sbjct: 56 IDVQLN 61
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
LR T + A + G + G AD++V+ P
Sbjct: 323 FSISDALRPLTSSVAGFLNLT-GKGEILPGNDADLLVMTP-------------------- 361
Query: 428 TENVVSVMCNGQWVMKNKKIL 448
+ V G+ ++K+ K
Sbjct: 362 ELRIEQVYARGKLMVKDGKAC 382
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 17 SSSTMIL-HNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS 75
+++ L A + + V V +I A+ + ++DL
Sbjct: 5 TAAGFTLLQGAHLYAPED----RGICDVLVANGKIIAVA---SNIPSDIVPNCTVVDLSG 57
Query: 76 QILLPGFVNTHVH 88
QIL PGF++ HVH
Sbjct: 58 QILCPGFIDQHVH 70
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 427
+ ++++ N + D D G + G +AD+V++D
Sbjct: 320 CSITELAKVSSYNSCVELGLD-DRGRIAEGTRADLVLLDE-------------------- 358
Query: 428 TENVVSVMCNGQWVMKNK 445
NVV + G+ V +++
Sbjct: 359 DLNVVMTIKEGEVVFRSR 376
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 17/79 (21%)
Query: 10 SSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQ 69
S MI+ +IV G V + + +I + ++
Sbjct: 2 GSDKIHHHHHHMIVEKVLIVD---PIDGEFTGDVEIEEGKIVKV--------------EK 44
Query: 70 IIDLQSQILLPGFVNTHVH 88
+ +L+PGFV+ H+H
Sbjct: 45 RECIPRGVLMPGFVDPHIH 63
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
++L NA+I E + F G V + I I + ++ + AD++I+ L
Sbjct: 5 KILLRNALITN---EGKTFP-GSVMIDGAFISRIIEG-ELPADDNLSADEVIECSGLRLF 59
Query: 80 PGFVNTHVH 88
PG ++ VH
Sbjct: 60 PGCIDDQVH 68
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ ++ +VT E+ +R V + + AI + I ID L P
Sbjct: 8 LIIRSSTVVT---ETTTYR-ADVAIRNGIVSAITEPGSISSD----DGPAIDGTGLHLFP 59
Query: 81 GFVNTHVH 88
G V+ HVH
Sbjct: 60 GMVDVHVH 67
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 43/291 (14%), Positives = 83/291 (28%), Gaps = 91/291 (31%)
Query: 55 QSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPY 114
Q+A F +L +ILL T++ K + D + T H + +
Sbjct: 254 QNAKAWNAF--------NLSCKILL---------TTRF--KQVTDFLSAATTTHISLDHH 294
Query: 115 ESNMTEEDSY--------------------ISTLLCGI--ELIHSGVTC---FAEAGGQH 149
+T ++ + I E I G+ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 150 VSE-MAKAVELLG---LRACLVQ-STMDCGEGLPAS-----WAVRTTDDCIQSQKELYAK 199
++ + ++ +L R + S +P W D + +L+
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 200 ---HHHAADGRIRIWFGI-----RQIMNATD--RLLLETRDMAREFKT------------ 237
+ I I I ++ N R +++ ++ + F +
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 238 ----GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 284
G H+ E E + R V FLD FL+ + T W
Sbjct: 474 YSHIGHHLKNIE-HPERMTLF--RMV------FLD-FRFLEQKIRHDSTAW 514
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 54/427 (12%), Positives = 105/427 (24%), Gaps = 158/427 (37%)
Query: 46 VQDRIKAIGQSADILQQFSQMADQII-----DLQSQILLPGFVNTHVHTSQQLAKGI-AD 99
VQD K+I +I D II + L ++ Q+ + +
Sbjct: 38 VQDMPKSILSKEEI--------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 100 DVDLMTWLHDRIWPYESNMTE--EDSYISTL--LCG------------IELI-------- 135
+ +L E YI L ++
Sbjct: 90 NYK---FLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 136 ----HSGVTCFAEAG-GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA----VRTT 186
V G G+ +A V + VQ MD W +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTW--VALDV----CLSYKVQCKMDFK----IFWLNLKNCNSP 195
Query: 187 DDCIQSQKELYAK-----------------HHHAADGRIRIWFGIRQ------------- 216
+ ++ ++L + H+ +R +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 217 --IMNATD---RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE 271
NA + ++LL TR V D T LD
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQ--------------------VTDFLSAATTTHISLDHHS 295
Query: 272 --FLQNNLLSAHTVWVNHTE-----------------IGLLSRAGV------------KV 300
+ + S +++ I R G+ K+
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 301 SHCPASAMRMLGFAPIKEMLHA------DICVSLGT-----DGAPSNNRMSIVDEMYLAS 349
+ S++ +L A ++M + ++ M +V++++ S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 350 LINKGRE 356
L+ K +
Sbjct: 416 LVEKQPK 422
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
+I+ N ++ D + + V +IK I ++ +IID + I+
Sbjct: 47 LKLIVKNGYVI--DPSQNLEGEFDILVENGKIKKIDKNIL------VPEAEIIDAKGLIV 98
Query: 79 LPGFVNTHVH 88
PGF++ HVH
Sbjct: 99 CPGFIDIHVH 108
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
+ N + E + V +I + ++ ++ID+ +++
Sbjct: 2 NYLFKNGRYMN---EEGKIVATDLLVQDGKIAKVAENIT------ADNAEVIDVNGKLIA 52
Query: 80 PGFVNTHVH 88
PG V+ HVH
Sbjct: 53 PGLVDVHVH 61
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N +V+ + + V ++ AI ++ A + ID + ++P
Sbjct: 4 VIVKNCRLVS---SDGITE-ADILVKDGKVAAISADTSDVE-----ASRTIDAGGKFVMP 54
Query: 81 GFVNTHVH 88
G V+ HVH
Sbjct: 55 GVVDEHVH 62
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N ++ ++ R + V +I AIGQ A +++D ++ P
Sbjct: 25 LIIKNGTVILENEA----RVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSP 73
Query: 81 GFVNTHVH 88
G V+ H H
Sbjct: 74 GMVDAHTH 81
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N I+T ++ ++ + I IGQ+ + ++ID + + P
Sbjct: 2 LLIKNGEIIT---ADSRYK-ADIYAEGETITRIGQNLEAPP-----GTEVIDATGKYVFP 52
Query: 81 GFVNTHVH 88
GF++ HVH
Sbjct: 53 GFIDPHVH 60
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 21 MIL-HNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
M L N ++ + + + + IK I + + IID + +
Sbjct: 1 MKLIKNGKVLQNGEL----QQADILIDGKVIKQIAPAIEPSN-----GVDIIDAKGHFVS 51
Query: 80 PGFVNTHVH 88
PGFV+ HVH
Sbjct: 52 PGFVDVHVH 60
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ IVT D V V RI IG + + +D ++P
Sbjct: 3 TVIKGGTIVTADLT----YKADVKVEGGRIVEIGPNLS--------GAETLDATGCYVMP 50
Query: 81 GFVNTHVH 88
G ++ H H
Sbjct: 51 GGIDPHTH 58
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N +I T S ++ + V +++ I S D ++ID + + P
Sbjct: 5 LIIKNGIICT---ASDIYA-AEIAVNNGKVQLIAASIDPSL-----GSEVIDAEGAFITP 55
Query: 81 GFVNTHVH 88
G ++ HVH
Sbjct: 56 GGIDAHVH 63
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+ T+++ N +V + R F+ V V IK I ++ + + +++D +
Sbjct: 6 QTGTILIKNGTVVN---DDRYFK-SDVLVENGIIKEISKNIEPKE-----GIKVVDATDK 56
Query: 77 ILLPGFVNTHVH 88
+LLPG ++TH H
Sbjct: 57 LLLPGGIDTHTH 68
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
+ N +VT S ++ V + +++ AIG ++ID LL
Sbjct: 2 KKWIRNGTVVT---ASDTYQ-ADVLIDGEKVVAIGSDLQA------TDAEVIDATGYYLL 51
Query: 80 PGFVNTHVH 88
PG ++ H H
Sbjct: 52 PGGIDPHTH 60
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 12 SGSLGSSSTM----ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMA 67
GS+ IL ++ D + R V V DRI A+G + A
Sbjct: 10 HGSMSQPDATPFDYILSGGTVI--DGTNAPGRLADVGVRGDRIAAVGDLSA------SSA 61
Query: 68 DQIIDLQSQILLPGFVNTHVHTSQQL 93
+ ID+ +++ PGF+++H H L
Sbjct: 62 RRRIDVAGKVVSPGFIDSHTHDDNYL 87
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 7e-05
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N IVT D + + +I IG + A++ ID + + P
Sbjct: 3 IIIKNGTIVTADGI----SRADLGIKDGKITQIGGALG-------PAERTIDAAGRYVFP 51
Query: 81 GFVNTHVH 88
G ++ H H
Sbjct: 52 GGIDVHTH 59
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+ S +++ +V D V V ++A+G +++D +
Sbjct: 25 APSRLLIRGGRVVNDDFS----EVADVLVEDGVVRALGHDLLPPGGAPA-GLRVLDAAGK 79
Query: 77 ILLPGFVNTHVH 88
++LPG ++TH H
Sbjct: 80 LVLPGGIDTHTH 91
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 9e-05
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 21 MIL-HNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
MIL N +V D V + + RI ++ A Q++D L
Sbjct: 1 MILIRNVRLV--DARGE-RGPADVLIGEGRILSLEGGE---------AKQVVDGTGCFLA 48
Query: 80 PGFVNTHVH 88
PGF++ H H
Sbjct: 49 PGFLDLHAH 57
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+S +++ IV D+ +++ IK IG++ + + I+ S+
Sbjct: 24 TSDRLLIKGGKIVNDDQS----FYADIYMEDGLIKQIGENLIVPG-----GVKTIEAHSR 74
Query: 77 ILLPGFVNTHVH 88
+++PG ++ H
Sbjct: 75 MVIPGGIDVHTR 86
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 100.0 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 100.0 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 100.0 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 100.0 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 100.0 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 100.0 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 100.0 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 100.0 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 100.0 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 100.0 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 100.0 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 100.0 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 100.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 100.0 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 100.0 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 100.0 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 100.0 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 100.0 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 100.0 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 100.0 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 100.0 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 100.0 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 100.0 | |
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 100.0 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 100.0 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 99.98 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.98 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 99.97 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 99.97 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.97 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.96 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 99.67 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 99.66 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.59 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 99.58 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 99.57 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 99.52 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 99.38 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.17 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 99.09 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 99.07 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.88 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 98.88 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 98.84 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.82 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.81 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 98.81 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.72 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 98.68 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.68 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.67 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.61 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.59 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.52 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 98.38 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.3 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 98.29 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.22 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 98.21 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 98.11 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.0 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 97.91 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.89 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 97.36 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.11 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 97.04 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 96.94 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 96.83 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 96.63 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 96.19 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 94.97 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 93.81 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 93.26 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 92.17 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 91.92 | |
| 2gwg_A | 350 | 4-oxalomesaconate hydratase; TIM-barrel like prote | 89.35 | |
| 1v77_A | 212 | PH1877P, hypothetical protein PH1877; RNAse P prot | 87.78 | |
| 1itu_A | 369 | Renal dipeptidase; glycoprotein, membrane-bound, z | 81.2 | |
| 2i5g_A | 325 | Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, stru | 80.4 |
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-57 Score=446.04 Aligned_cols=429 Identities=27% Similarity=0.447 Sum_probs=362.1
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
+++|++|+|++|+++++...++.+++|+|+||+|++|++..+.+..+ ++.++||++|++|+|||||+|+|+.++.+++
T Consensus 12 ~~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~--~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g 89 (472)
T 4dzh_A 12 EPCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRF--APARTVSRPDAALMPGLVNAHTHNPMTLLRG 89 (472)
T ss_dssp EEEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHE--EEEEEEEEEEEEEEECEEEEEECGGGGGGTT
T ss_pred CcCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcC--CCCeEEeCCCcEEEECccccccChhhHHhcc
Confidence 45889999999999887677888999999999999999865543222 2568999999999999999999999999999
Q ss_pred ccCCCCchHhhhhccccccC-CCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCC
Q 012333 97 IADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (466)
...+.++.+|+....|+.+. ..++++.+......+.+++++|||++.+++ .......++..+.|++........+.
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~a~~~~g~r~~~~~~~~~~-- 166 (472)
T 4dzh_A 90 VADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENY-FFADVQAAVYKQHGFRALVGAVIIDF-- 166 (472)
T ss_dssp SSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-SCHHHHHHHHHHTTCEEEEEEEECSS--
T ss_pred ccCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHhCCeEEEEecccCC--
Confidence 88899999999998888755 477778788888888999999999999987 55677788888999998776655532
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh
Q 012333 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 255 (466)
+..+ .....+.+....+.++.+.. .+.+++.++++..+..+++.+.++++.|+++|+++++|+.+...+......
T Consensus 167 --~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~ 241 (472)
T 4dzh_A 167 --PTAW-ASSDDEYFARAGELHDQWRD--DPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVA 241 (472)
T ss_dssp --CCSS-CSSHHHHHHHHHHHHHHHTT--CSSEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH
T ss_pred --Cccc-ccCHHHHHHHHHHHHHHhCC--CCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 1111 22445566666667666654 467888889999999999999999999999999999999988766665555
Q ss_pred hcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
..+. ...+.+...+.++.+.++.|+.++++++++++++.|+.+++||.+++.. .+.++++.+++.|+++++|||++.
T Consensus 242 ~~g~--~~i~~~~~~g~~~~~~~~~H~~~l~~~~i~~l~~~g~~v~~~p~s~~~~~~~~~~~~~~~~~Gv~v~lgtD~~~ 319 (472)
T 4dzh_A 242 QYGQ--RPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRASVNLAIGTDGCA 319 (472)
T ss_dssp HHSS--CHHHHHHHHTCCSTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHTTCEEEECCCCTT
T ss_pred HhCC--CHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCEEEEChHHHHhcCCCCccHHHHHHCCCCEEEECCCCc
Confidence 4443 4678888899999999999999999999999999999999999998876 678899999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC
Q 012333 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~ 414 (466)
.++..+++.+++.+....+... ..+.++|++++++++|.|||+++|+++++|+|++||.|||||+|.+.+...|
T Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~------~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~ 393 (472)
T 4dzh_A 320 SNNDLDMFSENRTAAILAKAVA------NDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQP 393 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHH------TCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCS
T ss_pred CCCCCCHHHHHHHHHHHhhhhc------CCCCcCCHHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCC
Confidence 6667899999988766554321 1235699999999999999999999888999999999999999999777778
Q ss_pred cCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
..+|+..+++.....+|..||++|++||++|+++++++++++++.++..
T Consensus 394 ~~~~~~~l~~~~~~~~V~~v~v~G~~v~~~g~~~~~d~~~i~~~~~~~~ 442 (472)
T 4dzh_A 394 LHHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELIDMDTAALVANARQWR 442 (472)
T ss_dssp CSCHHHHHHHTCCGGGEEEEEETTEEEEETTEETTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHhhcCCCCCceEEEECCEEEEECCEECcCCHHHHHHHHHHHH
Confidence 8899999888888889999999999999999999999999998877543
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-56 Score=441.03 Aligned_cols=430 Identities=28% Similarity=0.487 Sum_probs=359.0
Q ss_pred cccceEEEEccEEEeecCCc------ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 16 GSSSTMILHNAVIVTMDKES------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~------~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
.++++++|+|++|+++++.. .++++++|+|+||+|++|++..+. ..++.++||++|++|+|||||+|+|+
T Consensus 20 ~~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~----~~~~~~viD~~g~~v~PGlID~H~H~ 95 (468)
T 3lnp_A 20 KAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSC----QIPATETLDLGQQVLMPGWVNAHGHA 95 (468)
T ss_dssp -CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTTC----CCCEEEEEECCSEEEEECEEECSCCG
T ss_pred CccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCccc----cCCCCeEEeCCCcEEEeCeechhhCh
Confidence 45689999999999987755 577899999999999999986531 11356899999999999999999999
Q ss_pred cccccccccCCCCchHhhhhccccccC-CCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeec
Q 012333 90 SQQLAKGIADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQ 168 (466)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~ 168 (466)
.++.+++...+.++.+|+....|+.+. ..++++.+......+.+++++|||++.++. .......++..+.|++.....
T Consensus 96 ~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~g~r~~~~~ 174 (468)
T 3lnp_A 96 AMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMY-FYPQQSGEAALAAGIRAVCFA 174 (468)
T ss_dssp GGGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECC-SCHHHHHHHHHHHTCEEEEEE
T ss_pred hhhhhccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHcCCeEEEec
Confidence 999999988889999999998888765 467777777777888999999999999984 455677888889999988776
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHhccCC---CCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccC
Q 012333 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAA---DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (466)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 245 (466)
...+.. ..+ .....+.+....+.++.+.... .+.+...+.++..+..+++.+.++++.|+++|+++++|+.+
T Consensus 175 ~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e 249 (468)
T 3lnp_A 175 PVLDFP----TNY-AQNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHE 249 (468)
T ss_dssp EECSSC----CSS-CSSHHHHHHHHHHHHHHHHSCGGGTTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred cccCCC----ccc-ccCHHHHHHHHHHHHHHhhcCCcccCceEEEEEEcCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 655321 111 2244556666666766665443 34788888899989999999999999999999999999988
Q ss_pred CcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCC
Q 012333 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADI 324 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi 324 (466)
............+. ..++.+...+.++.+.++.|+.++++++++++++.|+.+++||.+++.. .+.++++.+++.|+
T Consensus 250 ~~~~~~~~~~~~g~--~~i~~~~~~g~l~~~~~~~H~~~~~~~~~~~l~~~g~~v~~~p~s~~~~~~~~~~~~~~~~~Gv 327 (468)
T 3lnp_A 250 TDFEVSESLETFNK--RPTQRLADIGFLNERVSCVHMTQVDDGDIKILQKTGASIIHCPESNLKLASGFCPIAKLSAANI 327 (468)
T ss_dssp SHHHHHHHHHHHSS--CHHHHHHHTTCCSTTEEEEECCSCCHHHHHHHHHHCCEEEECHHHHHHTTCCCCCHHHHHHTTC
T ss_pred CHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHhcCCEEEEChhhhhhcCCCCCCHHHHHHCCC
Confidence 76655555544443 4788889999999999999999999999999999999999999998876 67889999999999
Q ss_pred cEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEE
Q 012333 325 CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 404 (466)
Q Consensus 325 ~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv 404 (466)
++++|||+++.+...+++.+++.+....+... ..+.++|++++++++|.|||+++|+++++|+|++||.|||||
T Consensus 328 ~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv 401 (468)
T 3lnp_A 328 PLAIGTDGAASNNDLDMFSETKTAALLAKGVS------QDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQA 401 (468)
T ss_dssp CEEECCCCTTSSCCCCHHHHHHHHHHHHHHHH------TCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEE
T ss_pred eEEEECCCCcCCCCCCHHHHHHHHHHHhhhcc------CCCCcCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEE
Confidence 99999999877667899999988776554321 123469999999999999999999988899999999999999
Q ss_pred EcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 405 VDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 405 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
||.+.+...|.+++++.+++.....+|..||++|++||++|+++++++++++++.++..
T Consensus 402 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 460 (468)
T 3lnp_A 402 IDLNTLSSQPVFDPVSHMVYCTKSTQVSHVWVNGRCLLKNGELTTLNEETLINHAKAWA 460 (468)
T ss_dssp EECCSGGGCSCSCHHHHHHHSCCGGGEEEEEETTEEEEETTEESSSCHHHHHHHHHHHH
T ss_pred EeCCCCccCCccCHHHHhhccCCCCCceEEEECCEEEEECCeECCCCHHHHHHHHHHHH
Confidence 99998777788888888888877889999999999999999999999999999887654
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-56 Score=440.48 Aligned_cols=429 Identities=29% Similarity=0.468 Sum_probs=360.7
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
.++++++|+|++|+++++...++.+++|+|+||+|++|++..+. . ..+++++||++|++|+|||||+|+|+.++.++
T Consensus 5 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~-~--~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~ 81 (451)
T 4dyk_A 5 RNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQA-M--RHGATEIRELPGMLLAPGLVNAHGHSAMSLFR 81 (451)
T ss_dssp -CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHH-T--TTCEEEEEEEEEEEEEECEEECCCCGGGGGGT
T ss_pred cchhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCcccc-c--cCCCCeEEeCCCCEEeecccchhhChhhHHhc
Confidence 34689999999999987767788899999999999999985543 1 11366899999999999999999999999999
Q ss_pred cccCCCCchHhhhhccccccC-CCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCC
Q 012333 96 GIADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCG 174 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (466)
+...+.++.+|+....|+.+. ..++++.+......+.+++++|||++.++. .......++..+.|++.......++.
T Consensus 82 g~~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~a~~~~g~r~~~~~~~~~~- 159 (451)
T 4dyk_A 82 GLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMY-FYPQAICGVVHDSGVRAQVAIPVLDF- 159 (451)
T ss_dssp TSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-SCHHHHHHHHHHHTCEEEEEEEECSS-
T ss_pred cCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHcCCeEEEEchhhCC-
Confidence 998889999999998888765 466777777777888999999999999984 45677788888999998877666542
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
+..+ .......+....+..+.+.. .+.++..+.++..+..+++.+.++++.|+++|+++++|+.+.........
T Consensus 160 ---~~~~-~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~ 233 (451)
T 4dyk_A 160 ---PIPG-ARDSAEAIRQGMALFDDLKH--HPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAM 233 (451)
T ss_dssp ---CBTT-BSSHHHHHHHHHHHHHHTTT--CSSEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHH
T ss_pred ---CCcc-ccCHHHHHHHHHHHHHHhcC--CCceEEEEecCCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHH
Confidence 1111 22445556666666666653 36788888999999999999999999999999999999998866655555
Q ss_pred hhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCC
Q 012333 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~ 333 (466)
...+. ...+.+...+.++.+.++.|+.++++++++++++.|+.+++||.+++.. .+.++++.+++.|+++++|||++
T Consensus 234 ~~~g~--~~i~~~~~~g~~~~~~~~~H~~~~~~~~~~~l~~~g~~v~~~p~s~~~~~~~~~~~~~~~~~Gv~v~lgtD~~ 311 (451)
T 4dyk_A 234 ERNGE--RPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVETNSSVIHCPESNLKLASGFCPVEKLWQAGVNVAIGTDGA 311 (451)
T ss_dssp HHHSS--CHHHHHHHTTCCSTTEEEEECCCCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHHTCCEEECCCCG
T ss_pred HHhCC--CHHHHHHHCCCCCCCeEEEECCCCCHHHHHHHHHcCCEEEEChhhhhhccCCcccHHHHHhCCCeEEEECCCC
Confidence 44443 4778888999999999999999999999999999999999999998876 67889999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC
Q 012333 334 PSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~ 413 (466)
+.+...+++.+++.+....+.... .+.++|++++++++|.|||+++|+++++|+|++||.|||||+|.+.+...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~ 385 (451)
T 4dyk_A 312 ASNNDLDLLGETRTAALLAKAVYG------QATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQ 385 (451)
T ss_dssp GGSSCCCHHHHHHHHHHHHHHHHT------CTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGC
T ss_pred ccCCCCCHHHHHHHHHHHhhhhcC------CCCCCCHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccC
Confidence 766677999999887765543211 23469999999999999999999988899999999999999999987777
Q ss_pred CcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 414 PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
|.++|+..+++.....+|..||++|++||++|+++++++++++++.++..
T Consensus 386 ~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 435 (451)
T 4dyk_A 386 PVYDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLLRHDEQRLIARAREWG 435 (451)
T ss_dssp SCSCHHHHHHHHCCGGGEEEEEETTEEEEETTEESSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHhhccCCCCCccEEEECCEEEEECCEECcCCHHHHHHHHHHHH
Confidence 88889888888888889999999999999999999999999998887654
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-56 Score=435.98 Aligned_cols=428 Identities=28% Similarity=0.463 Sum_probs=356.3
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
++++++|+|++|+++++...++.+++|+|++|+|++|++..+.+ ..++.++||++|++|+|||||+|+|+.++.+++
T Consensus 4 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~---~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g 80 (447)
T 4f0r_A 4 SRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAA---GLEADERLELPDHVLMPGLINLHGHSAMSLLRG 80 (447)
T ss_dssp -CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHT---TSCEEEEEEEEEEEEEECEEEEEECGGGGGGTT
T ss_pred CcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccc---cCCCCeEEeCCCcEEeeCccchhhChhhHhhcc
Confidence 56899999999999887677888999999999999999865432 113568999999999999999999999999999
Q ss_pred ccCCCCchHhhhhccccccC-CCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCC
Q 012333 97 IADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (466)
...+.++.+|+....|+.+. ..++++.+......+.+++++|||++.++. .......++....|++........+.
T Consensus 81 ~~~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~g~r~~~~~~~~~~-- 157 (447)
T 4f0r_A 81 LADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMY-FYNAAVARAGLASGMRTFVGCSILEF-- 157 (447)
T ss_dssp SSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECB-SCHHHHHHHHHHHTCEEEEEEEECSS--
T ss_pred CCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHcCCeEEEEchhcCC--
Confidence 88888999999998888765 466667777777788889999999999985 45667788888999998876665532
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh
Q 012333 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 255 (466)
+..+ .....+.+....+.++++. +...+++.+.++..+..+++.+.++++.|+++|+++++|+.+..........
T Consensus 158 --~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~ 232 (447)
T 4f0r_A 158 --PTNY-ASNADDYIAKGMAERSQFL--GEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVK 232 (447)
T ss_dssp --CCSS-CSSHHHHHHHHHHHHHTTT--TCTTEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH
T ss_pred --Cccc-ccCHHHHHHHHHHHHHHhc--CCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 1111 2244555565566655544 3467888888888889999999999999999999999999888655555444
Q ss_pred hcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
..+. ...+.+...+.+..+.++.|+.++++++++++++.|+.+++||.++++. .+.++++.+++.|+++++|||+++
T Consensus 233 ~~g~--~~i~~~~~~g~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~ 310 (447)
T 4f0r_A 233 EHGQ--RPLARLQRLGLLSPRLVAAHMVHLNDAEVELAARHGLSTAHNPASNMKLASGISPVSKLMDAGVAVGIGTDGAA 310 (447)
T ss_dssp HHSS--CHHHHHHHHTCCSTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHTTCEEEECCCCGG
T ss_pred HcCC--CHHHHHHHcCCCCCCcEEEeccCCCHHHHHHHHHcCCEEEECchhhhhcCCCCCcHHHHHHCCCcEEEeCCCCc
Confidence 4433 3678888899999999999999999999999999999999999998876 678899999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC
Q 012333 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~ 414 (466)
.++..+++.+++.+....+.... .+.++|++++++++|.|||+++|+++++|+|++||.|||||+|.+.+...|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~ 384 (447)
T 4f0r_A 311 SNNKLDMLAETRLAALLAKVGTL------DPTSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAP 384 (447)
T ss_dssp GTCCCCHHHHHHHHHHHHHHHHT------CTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCS
T ss_pred CCCCCCHHHHHHHHHHHhhhhcc------CCCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCC
Confidence 76677899999887655543211 234699999999999999999999888999999999999999999777778
Q ss_pred cCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
.+++++.+++.....+|..||++|++||++|+++++++++++++.++..
T Consensus 385 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 433 (447)
T 4f0r_A 385 AFDPISHVVYAAGREQVSHVWVKGRALMRERKLTTLDESDLKARAGDWR 433 (447)
T ss_dssp CSCHHHHHHHTCCGGGEEEEEETTEEEEETTEESSSCHHHHHHHHHHHH
T ss_pred CcChHHHheecCCCCCceEEEECCEEEEECCeECcCCHHHHHHHHHHHH
Confidence 8888888888777889999999999999999999999999998887654
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=428.35 Aligned_cols=430 Identities=25% Similarity=0.355 Sum_probs=357.2
Q ss_pred EEEEcc-EEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 21 MILHNA-VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 21 ~lI~n~-~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
++|+|+ .|+++|+....+.+++|+|+||+|++|++... ..++.++||++|++|+|||||+|+|+.++.+++...
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~-----~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~ 76 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLS-----DRSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQ 76 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCC-----CTTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGG
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCC-----CCCCCeEEeCCCCEEecCeeecccccchhhhccccc
Confidence 789999 78888877778899999999999999998632 113678999999999999999999999999998754
Q ss_pred --CCCchHhhhhc------cccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc--------cCHHHHHHHHHHhCCe
Q 012333 100 --DVDLMTWLHDR------IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------QHVSEMAKAVELLGLR 163 (466)
Q Consensus 100 --~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~--------~~~~~~~~~~~~~g~~ 163 (466)
+.++.+|+... .|+. ..+++++.+......+.+++++|||++.+++. .......++..+.|++
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r 155 (456)
T 3ls9_A 77 LERVTMASWLEGVLTRSAGWWRD-GKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIR 155 (456)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHhcccccccccc-ccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCE
Confidence 88899999876 4442 25788888888888999999999999999732 2244567888899999
Q ss_pred EEeecccccCC---CCCCcccccCChHHHHHHHHHHHHHhcc-CCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCcc
Q 012333 164 ACLVQSTMDCG---EGLPASWAVRTTDDCIQSQKELYAKHHH-AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239 (466)
Q Consensus 164 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 239 (466)
.......++.+ .+.++........+.+....+.++.+.. .....+...++++..+..+++.+.++++.|+++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v 235 (456)
T 3ls9_A 156 FHAARSSMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRL 235 (456)
T ss_dssp EEEEECCCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEECCCCTTTSCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEccccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCE
Confidence 88766555432 1233444444556667777777777765 2346788888999899999999999999999999999
Q ss_pred ceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHH
Q 012333 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKE 318 (466)
Q Consensus 240 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~ 318 (466)
++|+.+.... .......+. ...+.+...+.++.+..+.|+.++++++++++++.|+.+++||.++++. .+.++++.
T Consensus 236 ~~H~~e~~~~-~~~~~~~~~--~~~~~~~~~g~~~~~~~i~H~~~~~~~~~~~l~~~g~~~~~~p~s~~~l~~~~~~~~~ 312 (456)
T 3ls9_A 236 HTHFYEPLDA-GMSDHLYGM--TPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVAIAHLIAPDLRMGWGLAPIRE 312 (456)
T ss_dssp EEEECCTTHH-HHHHHHHSS--CHHHHHHHTTCSSTTEEEEECCSCCGGGHHHHHHHTCEEEECHHHHHHTTCCCCCHHH
T ss_pred EEEeCCCchH-HHHHHHhCC--CHHHHHHHcCCCCCCcEEEeccCCCHHHHHHHHHcCCEEEEChhHHhhcCCCcchHHH
Confidence 9999988776 555554443 4678888899999999999999999999999999999999999999877 67889999
Q ss_pred HHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCC
Q 012333 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 398 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~ 398 (466)
+++.|+++++|||+++.++..+++.+++.+....+... . ...++++|++++++++|.+||+++|+++ +|+|++||
T Consensus 313 ~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~al~~~T~~~A~~lg~~~-~G~l~~G~ 387 (456)
T 3ls9_A 313 YLDAGITVGFGTTGSASNDGGNLLGDLRLAALAHRPAD--P--NEPEKWLSARELLRMATRGSAECLGRPD-LGVLEEGR 387 (456)
T ss_dssp HHHTTCEEEECCCCTTSSCCCCHHHHHHHHHHHTGGGS--T--TCGGGSCCHHHHHHHTTHHHHHHTTCTT-SSCCSTTS
T ss_pred HHHCCCcEEEECCCCccCCCCCHHHHHHHHHHHhcccc--c--cccccCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCC
Confidence 99999999999999877667899999998877665432 1 1122369999999999999999999987 99999999
Q ss_pred ccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 399 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 399 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
.|||||+|.+++...|.++++..+++.....+|..||++|++||++|+++++++++++++.++..-
T Consensus 388 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~~ 453 (456)
T 3ls9_A 388 AADIACWRLDGVDRVGVHDPAIGLIMTGLSDRASLVVVNGQVLVENERPVLADLERIVANTTALIP 453 (456)
T ss_dssp BCCEEEEESCSGGGTTBSSHHHHHHHCCSBCCCSEEEETTEEEEETTEESSSCHHHHHHHHHHHCC
T ss_pred ccCEEEEeCCCCccCCCCChHHHhhccCCCCCeeEEEECCEEEEECCEeCCCCHHHHHHHHHHHHH
Confidence 999999999988777888888888888777899999999999999999999999999999887643
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-53 Score=416.23 Aligned_cols=424 Identities=21% Similarity=0.337 Sum_probs=347.9
Q ss_pred ccceEEEEccEEEeecC-CcceeeceEEEEEC-CEEEEEcCCchhh---hhhccCCCeEEeC-CCcEEeecccccccCCc
Q 012333 17 SSSTMILHNAVIVTMDK-ESRVFRNGGVFVVQ-DRIKAIGQSADIL---QQFSQMADQIIDL-QSQILLPGFVNTHVHTS 90 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~-~~~~~~~~~v~I~~-G~I~~Ig~~~~~~---~~~~~~~~~~iD~-~G~~v~PG~ID~H~H~~ 90 (466)
.+.+++|+|..|++.+. ...++++++|+|++ |||++|++..+.+ ..++..+.++||+ +|++|+|||||+|+|+.
T Consensus 29 ~~~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~ 108 (476)
T 4aql_A 29 PPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHAS 108 (476)
T ss_dssp --CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGG
T ss_pred CCccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchH
Confidence 35689999999998643 45677899999998 9999999865432 1122235689995 59999999999999999
Q ss_pred ccccccccCCCCchHhhhhccccccCCCChhHHHHHHHH-HHHHHHhcCceeeeecCccCHHH---HHHHHHHhCCeEEe
Q 012333 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLL-CGIELIHSGVTCFAEAGGQHVSE---MAKAVELLGLRACL 166 (466)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~GvTtv~~~~~~~~~~---~~~~~~~~g~~~~~ 166 (466)
++.+++...+.++.+|+....|+.+..+.+++.+..... ...+++++||||+.+++..+... +.++..+.|+|...
T Consensus 109 ~~~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~r~~~ 188 (476)
T 4aql_A 109 QYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFV 188 (476)
T ss_dssp GGGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999988888775555544 34679999999999887655544 67788899999998
Q ss_pred ecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
+...++.....+. ........+++..+.+++++..+...++..++++..+.++++.+++++++|+++|+++++|+.+.
T Consensus 189 ~~~~~d~~~~~p~--~~~~~~~~l~~~~~~i~~~~~~~~~~v~~~l~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~ 266 (476)
T 4aql_A 189 GKVCMDLNDTFPE--YKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISEN 266 (476)
T ss_dssp ECEECSCCSSCTT--SCCCHHHHHHHHHHHHHHHHHHTCSSEEECBEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred eeccccCCCCCcc--cccCHHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 8888775432222 33456777788888888887666678888899999999999999999999999999999999998
Q ss_pred cchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCc
Q 012333 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 325 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~ 325 (466)
..+........+......+.++..+.++.+.++.|+.++++++++++++.|+.+.+||.+++.. .+..|++++++.|++
T Consensus 267 ~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~ 346 (476)
T 4aql_A 267 RDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVK 346 (476)
T ss_dssp HHHHHHHHHHCTTSSSHHHHHHTTTCCSTTEEEEECTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHTTCE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECchhhhhhCcchHHHHHHHHCCCc
Confidence 8877777776665446888999999999999999999999999999999999999999999877 678899999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEE
Q 012333 326 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 405 (466)
Q Consensus 326 ~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~ 405 (466)
+++|||.++. ...+++..++.+....+..... ...+.+++++++++++|.+||+++|+++++|+|++||.|||||+
T Consensus 347 v~lGtD~~~~-~~~~~~~~~~~a~~~~~~~~~~---~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~ 422 (476)
T 4aql_A 347 IGLGTDVAGG-YSYSMLDAIRRAVMVSNILLIN---KVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILI 422 (476)
T ss_dssp EEECCCTTTS-SCCCHHHHHHHHHHHHHHHHHT---TSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEE
T ss_pred EEEeCCCCCC-CCCCHHHHHHHHHHHHhhhhcc---cCCCCcCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEE
Confidence 9999998643 4678999998887665432211 12335799999999999999999999888999999999999999
Q ss_pred cCCCC----CC-------CCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 406 DPFSW----PM-------VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 406 d~~~~----~~-------~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
|.+.. .. .+.++++..+++..+..+|..|||+|++|++.+.
T Consensus 423 d~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~V~~v~v~G~~v~~~~~ 474 (476)
T 4aql_A 423 NPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSS 474 (476)
T ss_dssp CTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCCGGGEEEEEETTEEEECCC-
T ss_pred cCCCCCCccccccccccCCchhcHHHHHhhcCCCCCccEEEECCEEEecCCC
Confidence 99832 21 1246678888888888899999999999998653
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-51 Score=405.33 Aligned_cols=437 Identities=25% Similarity=0.341 Sum_probs=307.9
Q ss_pred cceEEEEccE-EEeecCCcc-----eeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcc
Q 012333 18 SSTMILHNAV-IVTMDKESR-----VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (466)
Q Consensus 18 ~~~~lI~n~~-i~~~d~~~~-----~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~ 91 (466)
+++++|+|++ |++++ ... .+.+++|+|+||||++|++..+ + +++++||++|++|+|||||+|+|+..
T Consensus 9 ~~~~li~n~~~i~~~~-~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-----~-~~~~viD~~G~~v~PG~ID~H~H~~~ 81 (492)
T 2paj_A 9 QPSTLIRNAAAIMTGG-RGTADDPSRVPGPDIRIVGDTIDAIGALAP-----R-PGETIVDATDCVIYPAWVNTHHHLFQ 81 (492)
T ss_dssp -CEEEEECBSEEBCCC-CSSSSSCSBCCCCCEEEETTEEEEESSCCC-----C-TTCEEEECBTCEEEECEECCCCCGGG
T ss_pred CCCeEEECCEEEEecC-CccccccceecccEEEEECCEEEEEcCCCC-----C-CCCeEEECCCcEEeeCccccccChhh
Confidence 3689999999 99865 220 3467899999999999997542 1 35689999999999999999999987
Q ss_pred ccccccc--CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-c-------CHHHHHHHHHHhC
Q 012333 92 QLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-Q-------HVSEMAKAVELLG 161 (466)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~-------~~~~~~~~~~~~g 161 (466)
...++.. .+.++.+|+.+..|+.....++++.+......+..++++||||+++++. . .+....++....+
T Consensus 82 ~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g 161 (492)
T 2paj_A 82 SLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLG 161 (492)
T ss_dssp GGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTT
T ss_pred HhhcCccCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcC
Confidence 7655544 4566888998888888888888877777777888899999999999863 1 2345566677788
Q ss_pred CeEEeecccccCCC----CCCcccccCChHHHHHHHHHHHHHhccCCC-CCeEEEEeeccc-ccCCHHHHHHHHHHHHHc
Q 012333 162 LRACLVQSTMDCGE----GLPASWAVRTTDDCIQSQKELYAKHHHAAD-GRIRIWFGIRQI-MNATDRLLLETRDMAREF 235 (466)
Q Consensus 162 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~~~~~~~l~~~~~~a~~~ 235 (466)
++.+......+... +..+..........+....++++.+..... +.+++.+.++.. ...+++.+.++++.+++.
T Consensus 162 ~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 241 (492)
T 2paj_A 162 LRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRL 241 (492)
T ss_dssp CEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHHHHHHHHHHHHHT
T ss_pred CEEEEEchhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEecccCCCCCCHHHHHHHHHHHHHc
Confidence 88876554432210 111111112223445555566555543222 456766777776 778999999999999999
Q ss_pred CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCc
Q 012333 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFA 314 (466)
Q Consensus 236 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~ 314 (466)
|+++++|+.+............+ ....+.+...+.+..+.++.|+.++++++++++++.|+.+++||.++++. .+.+
T Consensus 242 g~~v~~H~~~~~~~~~~~~~~~g--~~~~~~~~~~g~~~~~~~i~H~~~~~~~~i~~l~~~gv~v~~~p~~~~~l~~~~~ 319 (492)
T 2paj_A 242 GLRMHSHLSETVGYQDSAYSMYG--KSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRLGSGIC 319 (492)
T ss_dssp TCEEEEECC-------------C--CCHHHHHHHTTCCSTTEEEESCCSCCHHHHHHHHHHTCEEEECHHHHHCC-----
T ss_pred CCcEEEEeCCChHHHHHHHHHcC--CCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCEEEECchhhcccCCCCC
Confidence 99999999875544433333222 23566667777777888999999999999999999999999999988765 4668
Q ss_pred cHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccc---cccCC-----CCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE---VFANG-----TTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 315 ~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
|++.+++.|+++++|||+++.+...+++.+++.+..+.+... .+..+ ...+.++|++++++++|.|||+++|
T Consensus 320 p~~~~~~~Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lg 399 (492)
T 2paj_A 320 PVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMG 399 (492)
T ss_dssp CCTTHHHHTCCEEECCCHHHHCSCCSHHHHHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHT
T ss_pred CHHHHHHCCCcEEEeCCCCCCCCCCCHHHHHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhC
Confidence 899999999999999999765445689999887765544211 00000 1123569999999999999999999
Q ss_pred CCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 387 WDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 387 l~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
++ ++|+|++||+|||||+|.+.+...|..+|+..+.+.....+|..||++|++||++|+++.+++++++++.++...
T Consensus 400 l~-~~Gsl~~Gk~ADlvvld~~~~~~~~~~~p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~~ 476 (492)
T 2paj_A 400 LD-EVGKVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKELGGEARRVVR 476 (492)
T ss_dssp CT-TSSCCSTTSBCCEEEEECCSGGGTTCSSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCCHHHHHHHHHHHHH
T ss_pred CC-CccccCCCCccCEEEEeCCCcccCCccCHHHHHHhcCCCCCceEEEECCEEEEECCeeccCCHHHHHHHHHHHHH
Confidence 97 789999999999999999966555667777777666556789999999999999999999999999988876543
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=386.97 Aligned_cols=438 Identities=28% Similarity=0.483 Sum_probs=319.9
Q ss_pred CCCCCCcccceEEEEccEE-EeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccC
Q 012333 10 SSSGSLGSSSTMILHNAVI-VTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88 (466)
Q Consensus 10 ~~~~~~~~~~~~lI~n~~i-~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H 88 (466)
+|..+...+.|+||+|++| +|+|+...++++++|+|+||||++||+..+. +..++++||++|++|+|||||+|+|
T Consensus 20 ap~~~~~~p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~----~~~~~~vIDa~G~~v~PG~ID~H~H 95 (479)
T 3hpa_A 20 APNTSSSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAEL----PETADEVLDLRGHLVIPGLVNTHHH 95 (479)
T ss_dssp ---------CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGS----CSCCSEEEECTTEEEEECEEECCCC
T ss_pred CCCCCCCCCCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccC----CCCCCeEEECCCCEEeeCceeHhhC
Confidence 4444556678999999985 5788878889999999999999999986654 3356799999999999999999999
Q ss_pred Cccccccccc--CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-----cCHHHHHHHHHHhC
Q 012333 89 TSQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVSEMAKAVELLG 161 (466)
Q Consensus 89 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-----~~~~~~~~~~~~~g 161 (466)
+.++..++.. ...++.+|+... ++.......++.+........+++..|+|++.+... ........+....+
T Consensus 96 ~~~~~~~g~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g 174 (479)
T 3hpa_A 96 MYQSLTRAVPAAQNAELFGWLTNL-YKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIG 174 (479)
T ss_dssp GGGGGSCSCTTTTTCCHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHHHHHHHHHT
T ss_pred cchhcccccccCCCcchHHHHhhh-hhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchhhHHHHHHHHHHhc
Confidence 9988887754 456677887543 333445556666666667788899999999988542 34556677777888
Q ss_pred CeEEeecccccCCC---CCCcccccCChHHHHHHHHHHHHHhccCC-CCCeEEEEeecccccCCHHHHHHHHHHHHHcCC
Q 012333 162 LRACLVQSTMDCGE---GLPASWAVRTTDDCIQSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 237 (466)
Q Consensus 162 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 237 (466)
++............ ...................+....+.... .........++.....+.+.+.++...+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 254 (479)
T 3hpa_A 175 MRFHASRGAMSVGQRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGV 254 (479)
T ss_dssp CEEEEEEEECC----------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEESCTTTSCHHHHHHHHHHHHHHTC
T ss_pred chhhhhhheeeccccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeEecccccccCCHHHHHHHHHHHHhcCC
Confidence 88765443332211 11111122222333344444444444332 344555567777788899999999999999999
Q ss_pred ccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccH
Q 012333 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPI 316 (466)
Q Consensus 238 ~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~ 316 (466)
.+.+|+.....+........ +...............+..+.|+.++++.+++++++.+..+..+|.+.... .+..+.
T Consensus 255 ~~~~h~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (479)
T 3hpa_A 255 SLHTHLAENVNDIAYSREKF--GMTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPCSNMRLASGIAPV 332 (479)
T ss_dssp EEEEEESCSHHHHHC---------CHHHHHHHTTCCSTTEEEEECTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCH
T ss_pred eEEeecccchHHHHHHHHHc--CCchHHHHhhhccccccceeeeeEecchhHHHHHHhcCCceeeccccccccccCccch
Confidence 99999877654433322222 223566667777777888999999999999999999999999999988766 677899
Q ss_pred HHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccccc
Q 012333 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 396 (466)
Q Consensus 317 ~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~ 396 (466)
+.+.+.++++++|||....++...++..++.+....... ..+.++|++++++++|.|||++||++ ++|+|++
T Consensus 333 ~~~~~~~~~v~~gtD~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ls~~eal~~~T~~~A~~lgl~-~~G~I~~ 404 (479)
T 3hpa_A 333 KKMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVG-------FGPDAMTAREALEIATLGGAKVLNRD-DIGALKP 404 (479)
T ss_dssp HHHHHHTCCEEECCCCTTSSCCCCHHHHHHHHHHHHHHH-------HCTTSCCHHHHHHHTTHHHHHHHTCS-SSSSCST
T ss_pred hHHHhcCCcEEeeccccccCCCccHHHHHHHHHHHHhhh-------ccccCCCHHHHHHHHHHHHHHHhCCC-CCccCCC
Confidence 999999999999999987766667777766655443321 12346999999999999999999995 5899999
Q ss_pred CCccCEEEEcCCC-CCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 397 GKKADMVVVDPFS-WPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 397 G~~ADlvv~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
||+|||||||.+. +...|.+||++.++|.. ..+|..|||+|++||+||+++++|+++++++.++..
T Consensus 405 G~~ADlvv~D~~~~~~~~~~~dp~~~lv~~~-~~~v~~tiV~G~~V~~dG~~~~~D~~~~~~~~~~~~ 471 (479)
T 3hpa_A 405 GMAADFAAFDLRQPLFAGALHDPVAALVFCA-PSQTAYTVVNGKVVVREGRLATLDLPPVIERHNALA 471 (479)
T ss_dssp TSBCCEEEEETTSGGGTTCTTSHHHHHHHSS-CCCCSEEEETTEEEEETTEECSSCHHHHHHHHHHHH
T ss_pred CCcCCEEEEcCCCccccCCccCHHHHhhccC-CCCceEEEECCEEEEECCcCCCCCHHHHHHHHHHHH
Confidence 9999999999983 44447788888776644 568999999999999999999999999998887654
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=389.11 Aligned_cols=417 Identities=16% Similarity=0.154 Sum_probs=327.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|++++++|+.+. + ..+++++|+|+||||++|++..+ .++||++|++|+|||||+|+|+.++.+++.
T Consensus 11 m~~l~~~~~~~~--~---~~~~~~~v~I~~g~I~~Ig~~~~---------~~~iD~~g~~v~PGlID~H~H~~~~~~rg~ 76 (458)
T 4f0l_A 11 QHFIHARQALLP--D---GWAENVRIGIAGGVICSIETGVL---------AGPDDERQSVVVAGMANLHSHAFQYGMAGL 76 (458)
T ss_dssp CEEEEEEEEEET--T---EEEEEEEEEEETTEEEEEECSCC---------CCTTCEEEEEEEECEEEEEECGGGGGGTTS
T ss_pred hhHhhhcceecc--C---ccccCceEEEECCEEEEEeCCCc---------cccccCCCCEEccCceecccchhhhhhccc
Confidence 457788888763 2 35678999999999999998532 356999999999999999999999988887
Q ss_pred cC-----CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------------CHHHHHHHHH
Q 012333 98 AD-----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVE 158 (466)
Q Consensus 98 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------------~~~~~~~~~~ 158 (466)
.. +.++.+|+. ..|+....+++++.+......+.+++++||||+.++... ......++..
T Consensus 77 ~~~~~~~~~~~~~w~~-~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~ 155 (458)
T 4f0l_A 77 AERRGPSADSFWSWRE-IMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAAT 155 (458)
T ss_dssp SCBCCSCSSTTHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHH-HhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHH
Confidence 65 778899975 567777778888888888888899999999999986321 1456788888
Q ss_pred HhCCeEEeecccccCCC-C-CCccc----ccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHH
Q 012333 159 LLGLRACLVQSTMDCGE-G-LPASW----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (466)
Q Consensus 159 ~~g~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a 232 (466)
..|++..+....+..+. + ..+.. .........+...+..+.+.. ...+.+.++++..+..+++.+.++++++
T Consensus 156 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~a 233 (458)
T 4f0l_A 156 TAGMGLTLLPVFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEG--FEGAVLGVAPHSLRAVTPDELDSVTQLL 233 (458)
T ss_dssp HHTCEEEEEEEECCEEETTTEECCGGGTTTCCCHHHHHHHHHHHHHHHTT--CTTCEECBEECBTTTSCHHHHHHHTTSS
T ss_pred HcCCeEEEecchhccccccccCCchhhhhhhcCHHHHHHHHHHHHHHhcc--CCceEEEEecCCcCcCCHHHHHHHHHHh
Confidence 99999887655443210 0 01100 112233333333343333332 3456666788888999999999999988
Q ss_pred HHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-c
Q 012333 233 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L 311 (466)
Q Consensus 233 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~ 311 (466)
+ ++++++|+.+...+........+. .+.+.+...+.++.+.++.|+.++++++++++++.|+.+++||.+++.+ .
T Consensus 234 ~--g~~v~~H~~e~~~~~~~~~~~~g~--~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~l~~~g~~~~~~p~s~~~l~~ 309 (458)
T 4f0l_A 234 P--DAPVHIHVAEQVKEVEDCIAWSGK--RPVEWLLDHQDVTARWCLIHATHMSDEETKHMAKAGAIAGLCPVTEANLGD 309 (458)
T ss_dssp T--TSCEEEEESCSHHHHHHHHHHHSS--CHHHHHHHHSCCCTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHHHTTC
T ss_pred c--CCCEEEEeCCCHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHHHcCCeEEECccccccccC
Confidence 8 999999999888777766665554 3667888888889999999999999999999999999999999999877 6
Q ss_pred CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 312 GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 312 ~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
+.++++.+++.|+++++|||.. ...+++.+++.+....+........+..+++++++++++++|.+||+++|+ ++
T Consensus 310 ~~~~~~~~~~~Gv~v~lgtD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~--~~ 384 (458)
T 4f0l_A 310 GTFNATEFAAAGGKFGIGSDSN---VLIGIGDELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR--PE 384 (458)
T ss_dssp CCCCHHHHHHTTCEEEECCBTT---SSCCHHHHHHHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTC--TT
T ss_pred CCccHHHHHHCCCeEEEECCCC---CCCCHHHHHHHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCC--CC
Confidence 7889999999999999999964 346899999887665543222222223345799999999999999999999 37
Q ss_pred cccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 392 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 392 G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
|+|++||.|||||+|.+.....|.++++..+++.... +|..||++|++||++|++ ++++++.+++++..
T Consensus 385 G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~-~v~~v~v~G~~v~~~g~~--~d~~~i~~~~~~~~ 453 (458)
T 4f0l_A 385 DGLKKGASADFVSLDVERLPHAKGDVVLDGWIFAGRA-HVCDVWVRGVKQVEGGRH--RLRDEAERAFQKAL 453 (458)
T ss_dssp CSSSTTSBCCEEEEECTTSTTCCHHHHHHHHHHTSCC-EEEEEEETTEEEEETTEE--TTHHHHHHHHHHHH
T ss_pred CcCCCCCcCCEEEEeCCCCccCCcccHHHhCeEcCCC-CceEEEECCEEEEECCEe--CCHHHHHHHHHHHH
Confidence 9999999999999999977666777888888888777 999999999999999998 48999998887654
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-48 Score=380.38 Aligned_cols=417 Identities=21% Similarity=0.292 Sum_probs=301.8
Q ss_pred cccceEEEEccEEEeec-CCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccc
Q 012333 16 GSSSTMILHNAVIVTMD-KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d-~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~ 94 (466)
..|.+++|+|++|++++ +...++.+++|+|+||||++|++.... +.++.++||++|++|+|||||+|+|+....+
T Consensus 6 ~~m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~----~~~~~~viD~~G~~v~PGlID~H~H~~~~~~ 81 (439)
T 2i9u_A 6 KDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPD----KYKGNPIIDFRNNIIIPGMNDLHAHASQYKN 81 (439)
T ss_dssp ---CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCG----GGTTSCEEEEEEEEEEECEEEEEEEGGGGGG
T ss_pred CCcccEEEEeeEEEecCCccceEEeccEEEEECCEEEEecccccc----cCCCceEEcCCCeEEEecceecccccchHhh
Confidence 45678999999999876 223456788999999999999964321 1124579999999999999999999988777
Q ss_pred ccccCCCCchHhhhhccccccCCC-ChhHHHHHHHHHHHHHHhcCceeeeecCccCH---HHHHHHHHHhCCeEEeeccc
Q 012333 95 KGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 170 (466)
++...+.++.+|+....|+.+..+ ++++.+......+..++++||||+++++.... ....++..+.|++.......
T Consensus 82 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~ 161 (439)
T 2i9u_A 82 LGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVN 161 (439)
T ss_dssp TTCCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEE
T ss_pred hCCcCCCCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEEEEeee
Confidence 776666788899876656544333 33344444445678899999999999875443 44566677788887654443
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
.... .+..+ ............+.++++... .+.+++.+.++.....+++.+.++++.|++.|+++++|+.+...+.
T Consensus 162 ~~~~--~p~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 237 (439)
T 2i9u_A 162 MDYN--CPDYL-TENYITSLNDTEEIILKYKDK-SNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEI 237 (439)
T ss_dssp CCSS--CCTTS-CCCHHHHHHHHHHHHHHHTTT-CSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHH
T ss_pred cccc--CCccc-chhHHHHHHHHHHHHHHHhCC-CCceEEEEecCCcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHH
Confidence 3211 12111 112223445555666665432 3456666666666677899999999999999999999998876655
Q ss_pred HHHHhhcCCCCchHHHHhhhccCC-CCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEE
Q 012333 251 QVVMDTRKVDHGTVTFLDKIEFLQ-NNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSL 328 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~ 328 (466)
.......+......+.+...+..+ .+.++.|+.+++++.++++++.|+.+.+||.+++.. .+.++++.+++.|+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~H~~~~~~~~~~~l~~~g~~~~~~p~~~~~l~~~~~~~~~~~~~Gv~~~l 317 (439)
T 2i9u_A 238 AVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGMMPVRKYLNLGINVVL 317 (439)
T ss_dssp HHHHHHCTTCSSHHHHHHHTTCSSSSCEEEEECCSCCHHHHHHHHHTTCEEEECHHHHHHTTCCCCCHHHHHHTTCEEEE
T ss_pred HHHHHHhCCCCCHHHHHHHcCCCCCCCeEEEEEecCCHHHHHHHHHcCCEEEECccchhhcccccCCHHHHHHCCCcEEE
Confidence 555554443223556666777777 788899999999999999999999999999988765 457899999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC
Q 012333 329 GTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 329 gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 408 (466)
|||+++ +...+++.+++.+...++...... .....++|++++++++|.|||+++| ++|+|++||+|||||+|.+
T Consensus 318 gtD~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ls~~~al~~~T~~~A~~lg---~~Gsl~~G~~ADlvvld~~ 391 (439)
T 2i9u_A 318 GSDISA-GHTCSLFKVIAYAIQNSKIKWQES--GKKDMFLSTSEAFYMATKKGGSFFG---KVGSFEEGYDFDALVINDS 391 (439)
T ss_dssp CCCBTT-BCCSCHHHHHHHHHHHHHHHHHHT--TSCSCCCCHHHHHHHHTHHHHTTTS---SCSSCSTTCBCCEEEECCT
T ss_pred ecCCCC-CCCcCHHHHHHHHHHHhccccccc--cCCCCCCCHHHHHHHHHHHHHHHhc---cCCccCCCCccCEEEEeCC
Confidence 999976 345689999887765543211110 1223569999999999999999999 4799999999999999999
Q ss_pred CCCCC--CcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 409 SWPMV--PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 409 ~~~~~--~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
.+... |..+++..+++.....+|..||++|++||++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~ 431 (439)
T 2i9u_A 392 NLYPEDYDLTERLERFIYLGDDRNIMKRYVCGNEIFGPKF 431 (439)
T ss_dssp TSCGGGSCHHHHHHHHHHHCCGGGEEEEEETTEEEC----
T ss_pred CccccCCCccCHHHHheecCCCCCeeEEEECCEEEeeCCC
Confidence 55433 345555555555556799999999999998764
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=378.41 Aligned_cols=418 Identities=21% Similarity=0.314 Sum_probs=309.0
Q ss_pred eEEEEccEEEeecCC-----------cceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccC
Q 012333 20 TMILHNAVIVTMDKE-----------SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~-----------~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H 88 (466)
-++|.+|+|+++.++ ..++.+++|+|+||||++|++..+.+..+ +++++||++|++|+|||||+|+|
T Consensus 4 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~--~~~~viD~~G~~v~PG~ID~H~H 81 (475)
T 2ood_A 4 TTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAH--PGVEITHIKDRIIVPGFIDGHIH 81 (475)
T ss_dssp CEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHS--TTCEEEEEEEEEEEECEEEEEEE
T ss_pred cceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhcccc--CCCeEEeCCCcEEecceecCccc
Confidence 467889999986541 24567899999999999999754332111 25689999999999999999999
Q ss_pred CcccccccccCCCCchHhhhhccccccCCC-ChhHHHHHHHHHHHHHHhcCceeeeecCccCH---HHHHHHHHHhCCeE
Q 012333 89 TSQQLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRA 164 (466)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~ 164 (466)
+.++.+++.. +.++.+|+....|+.+... +.++.+......+..++++||||+++++.... ....++....|++.
T Consensus 82 l~~~~~~g~~-~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~ 160 (475)
T 2ood_A 82 LPQTRVLGAY-GEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRV 160 (475)
T ss_dssp GGGTTCTTCC-SCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHhHhhcCCC-CCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeE
Confidence 9877766543 4467889887766655443 34445555566788899999999999865433 45566777788887
Q ss_pred EeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc-CCccceec
Q 012333 165 CLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHV 243 (466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~v~~H~ 243 (466)
..+......+ .+.. ........+....+.++.+.. .+.++..+.++..+.++++.+.++++.++++ |+++++|+
T Consensus 161 ~~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~~g~~v~~H~ 235 (475)
T 2ood_A 161 IAGLTGIDRN--APAE-FIDTPENFYRDSKRLIAQYHD--KGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHI 235 (475)
T ss_dssp EECCEECCSS--SCTT-TCCCHHHHHHHHHHHHHHHTT--BTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred EEEeeecccC--CCcc-cccCHHHHHHHHHHHHHHhcc--CCceEEEEeccccCcCCHHHHHHHHHHHHhCCCCcEEEee
Confidence 6544333221 1111 112334455555666666543 3457777788888889999999999999999 99999999
Q ss_pred cCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHc
Q 012333 244 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 322 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~ 322 (466)
.+...+........+......+.++..+.++.+.++.|+.++++++++++++.|+.+.+||.+++.+ .+.++++.+++.
T Consensus 236 ~e~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~i~H~~~~~~~~i~~~~~~g~~~~~~P~~~~~l~~~~~~~~~~~~~ 315 (475)
T 2ood_A 236 SENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFLGSGLFRLGRATDP 315 (475)
T ss_dssp SCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHTCT
T ss_pred CCChHHHHHHHHHcCCCccHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCEEEEChhhhhhcccCcCCHHHHHhC
Confidence 8876665555554443344677778878788888999999999999999999999999999988765 578899999999
Q ss_pred CCc--EEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCC----------CCCCCCCHHHHHHHHhHHHHHHcCCCCc
Q 012333 323 DIC--VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT----------TDPAALPAETVLRMATINGAKSVLWDND 390 (466)
Q Consensus 323 gi~--~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ls~~~al~~~T~~~A~~lgl~~~ 390 (466)
|++ +++|||+++. ...+++..++.+....+.......+. ....++|++++++++|.|||+++|++++
T Consensus 316 Gv~~~~~lgTD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~ 394 (475)
T 2ood_A 316 EHRVKMSFGTDVGGG-NRFSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDK 394 (475)
T ss_dssp TSCCEEEECCCBTTB-SCCCHHHHHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTT
T ss_pred CCCCcEEEEccCCCC-CCcCHHHHHHHHHHHhcccchhccCCcccccccccccccCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 999 9999999763 34578888887654432100000000 0014699999999999999999999888
Q ss_pred ccccccCCccCEEEEcCCCCCCCC------------------cCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 391 IGSLEAGKKADMVVVDPFSWPMVP------------------VHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 391 ~G~i~~G~~ADlvv~d~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
+|+|++||+|||||+|.+.+...+ ..+|+..+++.....+|..||++|++||++.+
T Consensus 395 ~GsL~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~s~~~~~~~~~p~~~~~~~~~~~~V~~t~v~G~~v~~~~~ 468 (475)
T 2ood_A 395 LGNFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468 (475)
T ss_dssp SSSCCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCCGGGEEEEEETTEEEEECC-
T ss_pred ceeeCCCCccCEEEEeCCCccccccccccccccccccccccchhhHHHHHHhhCCCCCeeEEEECCEEEEECCC
Confidence 999999999999999999654322 23456666666667899999999999999875
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=378.07 Aligned_cols=417 Identities=19% Similarity=0.255 Sum_probs=323.8
Q ss_pred EEccEEEeecCCcceeeceEEEE-ECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC--
Q 012333 23 LHNAVIVTMDKESRVFRNGGVFV-VQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-- 99 (466)
Q Consensus 23 I~n~~i~~~d~~~~~~~~~~v~I-~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~-- 99 (466)
+..+.+++++ .++++++|.| +||+|++|++..+ ..+++|++| +|+|||||+|+|+.++.+++...
T Consensus 4 ~~~~~~~~~~---~~~~~~~v~i~~~g~I~~ig~~~~--------~~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~ 71 (453)
T 3mdu_A 4 IFAERALLPE---GWARNVRFEISADGVLAEIRPDAN--------ADGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVA 71 (453)
T ss_dssp EEEEEEEETT---EEEEEEEEEECTTSBEEEEESSCC--------CTTSEECSS-CEEECEEEEEECGGGGGGTTTTCCC
T ss_pred cchhheecCC---ceecCeEEEEecCCEEEEecCCCC--------cccccccCC-cccccceecccchHHHhhccccccc
Confidence 3455666543 3678899999 8999999998643 224679999 99999999999999999998764
Q ss_pred ---CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------------CHHHHHHHHHHhCC
Q 012333 100 ---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELLGL 162 (466)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------------~~~~~~~~~~~~g~ 162 (466)
+.++.+|+. ..|+....+++++.+......+.+++++||||+.++... ......++..+.|+
T Consensus 72 ~~~~~~l~~wl~-~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gi 150 (453)
T 3mdu_A 72 GNPNDSFWTWRE-LMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGI 150 (453)
T ss_dssp SSTTCCHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTC
T ss_pred cCCCCcHHHHHH-HHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCC
Confidence 567899975 468888888998888888889999999999999985321 13567888899999
Q ss_pred eEEeecccccCCC-C-CCccc----ccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 012333 163 RACLVQSTMDCGE-G-LPASW----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (466)
Q Consensus 163 ~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 236 (466)
+..+....++... + .++.. .....+..++...+..+.+... .. .+.++++..+.++++.++++++.|+ .|
T Consensus 151 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~p~~~~~~~~e~l~~~~~~A~-~g 226 (453)
T 3mdu_A 151 GLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAA--GH-SLGLCFHSLRAVTPQQIATVLAAGH-DD 226 (453)
T ss_dssp EEEEEECBCCBSSTTTCBCCGGGGGGCCCHHHHHHHHHHHHHHHHHH--TC-EECEEEEETTTSCHHHHHHHHTSSC-TT
T ss_pred eEEEecchhccccccCCCCchhhhhccCCHHHHHHHHHHHHHHhhcC--CC-eEEEecCCCCcCCHHHHHHHHHHHh-cC
Confidence 9887665554321 1 11111 0123333444444444443322 23 5557888889999999999999999 99
Q ss_pred CccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCcc
Q 012333 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAP 315 (466)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~ 315 (466)
+++++|+.+...+........+. .+.+.+...+.++.+.++.|+.++++++++++++.|+.+++||.+++++ .+.+|
T Consensus 227 ~~v~~H~~e~~~e~~~~~~~~g~--~~v~~l~~~g~~~~~~~~~H~~~~~~~~i~~la~~g~~v~~~P~sn~~lg~g~~p 304 (453)
T 3mdu_A 227 LPVHIHIAEQQKEVDDCQAWSGR--RPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFP 304 (453)
T ss_dssp SCEEEEESCSHHHHHHHHHHHSS--CHHHHHHHHSCCCTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCC
T ss_pred CCEEEEeCCCHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEEcCCCCHHHHHHHHHcCCEEEECchhHhhcCCCCCC
Confidence 99999999888777766665554 3677888888899999999999999999999999999999999999877 67899
Q ss_pred HHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCC-CCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 316 IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT-TDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 316 ~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
++.++++|+++++|||++. ..+++.+++.+....+......... ...++++++++++++|.+||+++|+ ++|+|
T Consensus 305 ~~~~~~~Gv~v~lgtD~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~--~~G~l 379 (453)
T 3mdu_A 305 ATDFLAQGGRLGIGSDSHV---SLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ--PIGSL 379 (453)
T ss_dssp HHHHHHTTCEEEECCBTCS---CCCHHHHHHHHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTS--SCSSC
T ss_pred HHHHHHCCCEEEEECCCCC---CCCHHHHHHHHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCC--CCCcc
Confidence 9999999999999999753 3589999988766544321111111 1224799999999999999999999 58999
Q ss_pred ccCCccCEEEEcCCCCCCC--CcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhhc
Q 012333 395 EAGKKADMVVVDPFSWPMV--PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLMN 465 (466)
Q Consensus 395 ~~G~~ADlvv~d~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~~ 465 (466)
++|+.|||||+|.+..... +.++++..+++.....+|..||++|++||++|+++ +++++.+++++...+
T Consensus 380 ~~G~~AD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~--~~~~i~~~~~~~~~~ 450 (453)
T 3mdu_A 380 AVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHA--GEERSARAFVQVLGE 450 (453)
T ss_dssp CTTSBCCEEEECTTCHHHHTCCHHHHHHHHHHHCCGGGEEEEEETTEEEEBTTBCT--THHHHHHHHHHHHHH
T ss_pred CCCCcCCEEEEeCCCccccCCCccChHHHheeeCCCCCeeEEEECCEEEEECCccC--CHHHHHHHHHHHHHH
Confidence 9999999999999843322 55677777777777789999999999999999985 899999888876543
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-48 Score=375.80 Aligned_cols=394 Identities=27% Similarity=0.422 Sum_probs=300.8
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++++.. ..+++|+|+||||++|++.. ++++ ||++|++|+|||||+|+|+.....++...+
T Consensus 1 ~li~n~~v~~~~~~~--~~~~~v~I~~g~I~~vg~~~--------~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~ 69 (406)
T 1p1m_A 1 MIIGNCLILKDFSSE--PFWGAVEIENGTIKRVLQGE--------VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAED 69 (406)
T ss_dssp CEEEEEEECCSTTSC--CEEEEEEEETTEEEEEEESS--------CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCS
T ss_pred CEEEccEEEecCccc--cccceEEEECCEEEEeeCCC--------Ccce-ecCCCcEEeecccchhhccchhhhccccCC
Confidence 479999999876432 46789999999999998742 2446 999999999999999999988877777677
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCCcc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (466)
.++.+|+....|+.....+.++.+......+..++++||||+++++. ......++....|++.+......+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~-~~~~~~~~~~~~g~r~~~~~~~~~~~~----- 143 (406)
T 1p1m_A 70 LSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYF-HEEWIAKAVRDFGMRALLTRGLVDSNG----- 143 (406)
T ss_dssp CCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEES-SHHHHHHHHHHHCCEEEEEEEECCBTT-----
T ss_pred CCHHHHHHhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechh-CHHHHHHHHHHcCCEEEEEcccccCCC-----
Confidence 78899999888888777777777766666778899999999999763 455666777778988876544433210
Q ss_pred cccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh--hcC
Q 012333 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRK 258 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~ 258 (466)
.....+....+.++.+.... +.++..+.++.++..+++.+.++++.+++.|+++++|+.+.......... ..+
T Consensus 144 ----~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g 218 (406)
T 1p1m_A 144 ----DDGGRLEENLKLYNEWNGFE-GRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIG 218 (406)
T ss_dssp ----BCTTHHHHHHHHHHHHTTGG-GTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTHHHHTTT
T ss_pred ----CHHHHHHHHHHHHHHhhCCC-CcEEEEEecCccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHHHhhhCC
Confidence 11123333444555554322 45676677777777899999999999999999999999754322111111 000
Q ss_pred CCCchHHHHhhhccCCCCeeEEEee---cCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCC
Q 012333 259 VDHGTVTFLDKIEFLQNNLLSAHTV---WVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (466)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~H~~---~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~ 334 (466)
+...+... .++.|+. +++++++++++ .+||.++++. .+.++++.+++.|+++++|||+++
T Consensus 219 --------~~~~g~~~--~~~~H~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~Gv~~~lgtD~~~ 282 (406)
T 1p1m_A 219 --------LKEVKTIA--AHCVHLPERYFGVLKDIPFFV------SHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAA 282 (406)
T ss_dssp --------TTTSCEEE--EECTTCCGGGTTTTTTSSEEE------EECHHHHHHTTCCCCCHHHHHHTTCEEEECCCCTT
T ss_pred --------HhHcCcce--eEeeeccCcccCCHHHHHHHH------HhCcHHHhhcCCCcCcHHHHHhCCCeEEEECCCCc
Confidence 11122221 5688999 99988876544 7899877665 567899999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC
Q 012333 335 SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~ 414 (466)
.+...+++.+++.+....+.. ...++|++++++++|.|||+++|+++ |+|++|++|||||+|.+.+...|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~--------~~~~ls~~~al~~~T~~~A~~lgl~~--G~l~~G~~ADlvv~d~~~~~~~~ 352 (406)
T 1p1m_A 283 SNNSLNLFFEMRLASLLQKAQ--------NPRNLDVNTCLKMVTYDGAQAMGFKS--GKIEEGWNADLVVIDLDLPEMFP 352 (406)
T ss_dssp TTSCCCHHHHHHHHHHHHHTT--------CTTSSCHHHHHHHHTHHHHHHHTCSC--SSCCTTSBCCEEEEECCSGGGCS
T ss_pred CCCCCCHHHHHHHHHHHhccc--------CCCCCCHHHHHHHHHHHHHHHhCCCC--cccCCCCcccEEEEeCCccccCC
Confidence 665678999988877665421 13469999999999999999999964 99999999999999999766667
Q ss_pred cCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHh
Q 012333 415 VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 463 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 463 (466)
.++++..+.+.....+|..||++|++|| +|+++.++++++.++.++..
T Consensus 353 ~~~~~~~~~~~~~~~~v~~v~v~G~~v~-~g~~~~~d~~~~~~~~~~~~ 400 (406)
T 1p1m_A 353 VQNIKNHLVHAFSGEVFATMVAGKWIYF-DGEYPTIDSEEVKRELARIE 400 (406)
T ss_dssp GGGHHHHHHHTCCSCCSEEEETTEEEEE-TTBCTTSCHHHHHHHHHHHH
T ss_pred ccChHHHheEecCCCCceEEEECCEEEE-CCeeCCCCHHHHHHHHHHHH
Confidence 7777777666666789999999999999 99999999999998887654
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=376.32 Aligned_cols=401 Identities=19% Similarity=0.255 Sum_probs=307.4
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|+++++ ++++++|+| ||+|++|++..+.+..+ ++.++||++|++|+|||||+|+|+.++.+++....
T Consensus 2 ~~i~~~~v~~~~~---~~~~~~v~i-~g~I~~Vg~~~~~~~~~--~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~ 75 (427)
T 3v7p_A 2 RIIKPFAILTPQT---IIQDKAVAF-DKKIEAIDTVENLIKKY--PNAAVEHDENSLLLPGFANPHLHLEFSANKATLQY 75 (427)
T ss_dssp EEEEEEEEECSSS---EEESCEEEE-SSBEEEEECHHHHHHHC--TTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCC
T ss_pred EEEECCEEEcCCC---EEeCcEEEE-CCEEEEecChhhhcccc--CCceEEeCCCCEEecCEeecccCcchhhccccccc
Confidence 6899999998764 778999999 99999999865543322 35689999999999999999999999999988888
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCCCCCcc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (466)
.++.+|+....++.+. .++++.+........+++++|||++.++.... ...++....|++.......... .+
T Consensus 76 ~~l~~wl~~~~~~~~~-~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~--~~~~a~~~~Gir~~~~~~~~~~----~~- 147 (427)
T 3v7p_A 76 GDFIPWLYSVIRHRED-LLPLCDGACLEQTLSSIIQTGTTAIGAISSYG--EDLQACIDSALKVVYFNEVIGS----NA- 147 (427)
T ss_dssp SSHHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHTTEEEEEEEESSS--TTHHHHHHBSSEEEEEEEECBC----CG-
T ss_pred CCHHHHHHHHHHhHHh-cCHHHHHHHHHHHHHHHHHhCCEEEEEecCcH--HHHHHHHhcCCeEEEeccccCC----Ch-
Confidence 8999999888777653 44444566666778889999999999975432 2357888999998776554321 11
Q ss_pred cccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCC-
Q 012333 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV- 259 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~- 259 (466)
........+..+.++.........+...++++.++.++++.+++++++|+++++++++|+.+...+........+.
T Consensus 148 ---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~ 224 (427)
T 3v7p_A 148 ---ATADVMYASFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEF 224 (427)
T ss_dssp ---GGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHH
T ss_pred ---hhhhHHHHHHHHHHHHhhhccCCceEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcc
Confidence 1223334444555555555556788888999999999999999999999999999999999988777666553331
Q ss_pred ---------CCchHH-HHhhhcc-CCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEE
Q 012333 260 ---------DHGTVT-FLDKIEF-LQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVS 327 (466)
Q Consensus 260 ---------~~~~~~-~~~~~~~-~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~ 327 (466)
...+.. ..+.++. ++.+.++.|+.++++++++++++.|+.+++||.+++.. .+.+|++.+ .|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~H~~~~~~~~~~~l~~~g~~~~~~p~s~~~~~~~~~~~~~~--~Gv~v~ 302 (427)
T 3v7p_A 225 AKFFKEFLNQTRPVNDTKSFLELFKELHTLFVHMVWANEEEIQTIASYNAHIIHCPISNRLLGNGVLDLEKI--KSIPYA 302 (427)
T ss_dssp HHHHHHHTCCCSCSSCHHHHHHTTTTSEEEEEECTTCCHHHHHHHHHSEEEEEECHHHHHHTTCCCCCTTTT--TTSCEE
T ss_pred hhhhhhhccCCCcccCHHHHHhhhcCCCEEEEECCCCCHHHHHHHHHcCCEEEECHHHHHHhcCCCCCHHHH--CCCeEE
Confidence 011111 2222333 56788999999999999999999999999999999877 567888888 999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcC
Q 012333 328 LGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 407 (466)
Q Consensus 328 ~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~ 407 (466)
+|||+...+...+++.+++.+....+. .+..++++++++++|.+||+++|++ +|+|++|+.|||||+|.
T Consensus 303 lgtD~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~t~~~a~~~g~~--~g~l~~G~~Ad~~~~d~ 371 (427)
T 3v7p_A 303 IATDGLSSNYSLNMYEELKAALFVHPN---------KEATTFAKELIIRATKAGYDALGFE--GGEIAVGKDADMQLIDL 371 (427)
T ss_dssp ECCCCTTSCSCCCHHHHHHHHHHHSTT---------SCHHHHHHHHHHHHTHHHHHHHTCS--CSSCCTTSBCCEEEEEC
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHhccC---------CCcccCHHHHHHHHHHHHHHHhCCC--CceeCCCCccCEEEEcC
Confidence 999987666678999999988766532 1223678999999999999999995 79999999999999999
Q ss_pred CCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHH
Q 012333 408 FSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGR 454 (466)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~ 454 (466)
+.....|.+++...+. ...+|..||++|++||++|+++.....+
T Consensus 372 ~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~~g~~~~~~~~~ 415 (427)
T 3v7p_A 372 PEGLTNVEDLYLHVIL---HTTKPKKVYIQGEEHVREAENLYFQSHH 415 (427)
T ss_dssp CTTCCCGGGHHHHHHH---HCSSCSEEEETTEEEEC---CCCBC---
T ss_pred CCccCCCccchHHHhc---ccCCccEEEECCEEEEECCcccCCcccc
Confidence 8554445454443322 2478999999999999999988765543
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=328.38 Aligned_cols=379 Identities=22% Similarity=0.260 Sum_probs=243.2
Q ss_pred cceEEEEc-cEEEeecCCc----------ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccc
Q 012333 18 SSTMILHN-AVIVTMDKES----------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTH 86 (466)
Q Consensus 18 ~~~~lI~n-~~i~~~d~~~----------~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H 86 (466)
.+|++|+| ++|+|+++.. ..+.+++|+|+||||++|++..+. ... +.+++||++|++|+|||||+|
T Consensus 4 ~~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~-~~~--~~~~viD~~G~~v~PGfID~H 80 (421)
T 2bb0_A 4 QIDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAE-AGY--EADEIIDCSGRLVTPGLVDPH 80 (421)
T ss_dssp EEEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTTT-TTC--EEEEEEECTTCEEEECEEECC
T ss_pred cccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEeccccc-ccC--CCCeEEeCCCCEeccCeeccC
Confidence 36899999 9999876432 345678999999999999975310 000 135799999999999999999
Q ss_pred cCCcccccccccCCCCchHhhhhcccc--------------ccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--CH
Q 012333 87 VHTSQQLAKGIADDVDLMTWLHDRIWP--------------YESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HV 150 (466)
Q Consensus 87 ~H~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--~~ 150 (466)
+|+.....+. ..+..|+.+..|. .....+.++.+.........++++|||++.++... ..
T Consensus 81 ~H~~~~~~~~----~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~ 156 (421)
T 2bb0_A 81 THLVFGGSRE----KEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEK 156 (421)
T ss_dssp BCCCCCSCCG----GGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSH
T ss_pred cCccccccch----HHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEeccccCcCc
Confidence 9986533221 1122333221111 00112344444445556788999999999885321 11
Q ss_pred H---HHHHHH----HHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHH
Q 012333 151 S---EMAKAV----ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 223 (466)
Q Consensus 151 ~---~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 223 (466)
. ...++. ...+++....... .+..++.+. ......+......++.+...+ .....-........+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e 230 (421)
T 2bb0_A 157 ETELKQLRVAKKLHESQPVDLVSTFMG---AHAIPPEYQ-NDPDDFLDQMLSLLPEIKEQE--LASFADIFTETGVFTVS 230 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEEEE---ESSCCGGGT-TCHHHHHHHHHTTHHHHHHTT--CCSEEEEBBCTTSBCHH
T ss_pred cchHHHHHHHHHHHhhcCceEEEEeec---cccCChhhc-ccHHHHHHHHHHhhHHhhccC--ccccccccCCcCCCCHH
Confidence 1 122222 2334554321110 011122111 111122222111222222111 11111111222345789
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEEC
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~ 303 (466)
.+.++++.+++.|+++.+|+.+.... ...+.....+ ...+.|+.++++++++++++.|+.+++|
T Consensus 231 ~l~~~~~~a~~~g~~v~~H~~~~~~~------------~~~~~~~~~g----~~~~~H~~~~~~~~i~~~~~~g~~~~~~ 294 (421)
T 2bb0_A 231 QSRRYLQKAAEAGFGLKIHADEIDPL------------GGAELAGKLK----AVSADHLVGTSDEGIKKLAEAGTIAVLL 294 (421)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSSCC------------SHHHHHHHTT----CSEEEECTTCCHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEecccccc------------CHHHHHHHcC----CcEEhhhhcCCHHHHHHHHHcCCeEEEC
Confidence 99999999999999999998653211 1222222222 2458899999999999999999999999
Q ss_pred ccchhhc--cCCccHHHHHHcCCcEEEccCCCC-CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHH
Q 012333 304 PASAMRM--LGFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATIN 380 (466)
Q Consensus 304 p~~~~~~--~~~~~~~~~~~~gi~~~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~ 380 (466)
|.+++.. .+..+++.++++|+++++|||+++ .++..+++..++.+.... ++|++++|+++|.|
T Consensus 295 p~~~~~l~~~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~~--------------~ls~~eal~~~T~~ 360 (421)
T 2bb0_A 295 PGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALHL--------------KMTAEEIWHAVTVN 360 (421)
T ss_dssp HHHHHHTTCCCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHHHHHHHHS--------------CCCHHHHHHHTTHH
T ss_pred CchhhhhcccccchHHHHHHCCCeEEEeCCCCCCCCcccCHHHHHHHHhccc--------------CCCHHHHHHHHHHH
Confidence 9988654 467899999999999999999865 334568888888654322 49999999999999
Q ss_pred HHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC-Ceee
Q 012333 381 GAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN-KKIL 448 (466)
Q Consensus 381 ~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~~ 448 (466)
||+++|+++++|+|++||+|||||+|.+++ .+ +.+.....+|..||++|++||+. |+++
T Consensus 361 ~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~~-----~~----~~~~~~~~~v~~t~v~G~~v~~~~g~~~ 420 (421)
T 2bb0_A 361 AAYAIGKGEEAGQLKAGRSADLVIWQAPNY-----MY----IPYHYGVNHVHQVMKNGTIVVNREGAIL 420 (421)
T ss_dssp HHHHTTCTTTSSCCSTTSBCCEEEESSSST-----TH----HHHSCSSCCEEEEEETTEEEEEC-----
T ss_pred HHHHhCccCCccccCCCCcCCEEEECCccc-----cc----CHhHcCCCceEEEEECCEEEEeCCcccc
Confidence 999999988899999999999999999833 22 12223346899999999999985 6654
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=339.40 Aligned_cols=377 Identities=15% Similarity=0.180 Sum_probs=259.1
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
+++++|+|++|++++ .+++|+|+||+|++|++..+. +..++++||++|++|+|||||+|+|+.....++.
T Consensus 7 ~~~~li~n~~v~~~~------~~~~v~I~~g~I~~vg~~~~~----~~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~ 76 (430)
T 1ra0_A 7 NALQTIINARLPGEE------GLWQIHLQDGKISAIDAQSGV----MPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQ 76 (430)
T ss_dssp -CCCEEEEEBCTTCC------SEEEEEEETTEEEEEEEESSC----CCCCTTEEECTTCEEESCEEEEEECTTTTTCTTS
T ss_pred CCcEEEEeeEecCCC------ceeEEEEECCEEEEeecCCCC----CCCCcceEccCCCEecccccccccchhhhhhcCC
Confidence 468999999999642 456999999999999975432 1135689999999999999999999987766654
Q ss_pred cC---CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-C-----HHHHHHHHHHhCCeEEeec
Q 012333 98 AD---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-H-----VSEMAKAVELLGLRACLVQ 168 (466)
Q Consensus 98 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~-----~~~~~~~~~~~g~~~~~~~ 168 (466)
.. +.++.+|+.. .|+....++.++.+......+..++++||||+++++.. . .....+.............
T Consensus 77 ~~~~~~~~~~~~l~~-~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (430)
T 1ra0_A 77 PNWNQSGTLFEGIER-WAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQI 155 (430)
T ss_dssp SSCCSSCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHHHTTTCEEEE
T ss_pred CcCCCCCCHHHHHHH-hHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCChHHHHHHHHHHHHHhhhhhEEEEE
Confidence 43 5677888864 35556667777777777778888999999999987532 1 2222332222122211111
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccccc--CCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMN--ATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
... ...+. +.. ... .+.++++...+.+.+. ..++..+. .+++.+.++++.|++.|+++.+|+.+.
T Consensus 156 ~~~-~~~~~---~~~---~~~----~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~ 222 (430)
T 1ra0_A 156 VAF-PQEGI---LSY---PNG----EALLEEALRLGADVVG--AIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEI 222 (430)
T ss_dssp EEE-CTTCS---SSS---TTH----HHHHHHHHHTTCSEEC--CCGGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCS
T ss_pred Eec-CCccc---ccC---chH----HHHHHHHHHhCCCeEe--eeecccccccccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 000 00000 000 111 1122222222322222 12333333 678889999999999999999999765
Q ss_pred cchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChh-------hHHHHHhcCCeEEECccchhhc---------
Q 012333 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT-------EIGLLSRAGVKVSHCPASAMRM--------- 310 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~-------~~~~~~~~g~~~~~~p~~~~~~--------- 310 (466)
......... ...+.+...+. +.+..+.|+.+++++ .++++++.|+.+++||.+++..
T Consensus 223 ~~~~~~~~~------~~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~~~p~~~~~~~~~~~~~p~ 295 (430)
T 1ra0_A 223 DDEQSRFVE------TVAALAHHEGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPK 295 (430)
T ss_dssp SCTTCCHHH------HHHHHHHHHTC-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECHHHHHHHTTTTCCSSC
T ss_pred CchhHHHHH------HHHHHHHHhCC-CCCEEEEeccccccCChHhHHHHHHHHHHcCCEEEECchhhhhhccccCCCCC
Confidence 432211111 02334445554 667889999999886 8999999999999999876543
Q ss_pred -cCCccHHHHHHcCCcEEEccCCCC----CCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 311 -LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 311 -~~~~~~~~~~~~gi~~~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
.+..+++.++++|+++++|||+++ .....+++.+++.+....+.. .++|++++++++|.|||+++
T Consensus 296 ~~~~~~~~~~~~~Gv~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~al~~~T~~~A~~l 365 (430)
T 1ra0_A 296 RRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQLM----------GYGQINDGLNLITHHSARTL 365 (430)
T ss_dssp CCCCCCHHHHHHTTCCEEECCBCSSBTTBSCCCCCHHHHHHHHHHHTTCC----------SHHHHHGGGGGGTHHHHHHT
T ss_pred cCCCCCHHHHHHCCCEEEEeCCCCcccCCCCCCCCHHHHHHHHHHHHccC----------CcccHHHHHHHHHHHHHHHh
Confidence 356789999999999999999973 223468899988776554321 12589999999999999999
Q ss_pred CCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 386 LWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 386 gl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
|+++ |+|++||+|||||+|.+.+ .+.+. ...+|..||++|++||++++++
T Consensus 366 g~~~--G~i~~G~~ADlvv~d~~~~-----~~~~~------~~~~v~~v~~~G~~v~~~~~~~ 415 (430)
T 1ra0_A 366 NLQD--YGIAAGNSANLIILPAENG-----FDALR------RQVPVRYSVRGGKVIASTQPAQ 415 (430)
T ss_dssp TCSS--CSSCTTSBCCEEEESSSSH-----HHHHH------HTCCCSEEEETTEEEEECCCCC
T ss_pred CCCC--cccCCCCcCCEEEEcCCCh-----hHHHh------ccCcceEEEECCEEEecCCcce
Confidence 9964 9999999999999998721 11111 2468999999999999999875
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=336.11 Aligned_cols=367 Identities=18% Similarity=0.178 Sum_probs=247.7
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|++++|+|++|+++++ ..+..+++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+......
T Consensus 3 ~~~~~i~n~~v~~~~~-~~~~~~~~v~I~~g~I~~vg~~~~~-----~~~~~viD~~G~~v~PGlID~H~H~~~~~~~-- 74 (423)
T 3feq_A 3 LTITVLQGGNVLDLER-GVLLEHHHVVIDGERIVEVTDRPVD-----LPNAQAIDVRGKTVMPGFIDCHVHVLASNAN-- 74 (423)
T ss_dssp -CEEEEEEEEEEETTT-TEEEEEEEEEEETTEEEEEECSCCC-----CSSCEEEECTTCEEEECEEEEEECTTCCSSC--
T ss_pred ceEEEEEccEEEeCCC-CcccCCceEEEECCEEEEecCCCCC-----CCCCeEEeCCCCEECCCeeeeEeeecccCCC--
Confidence 5689999999998664 4566788999999999999985321 2477899999999999999999999653220
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHH---hCCeEEeecccccCC
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL---LGLRACLVQSTMDCG 174 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~ 174 (466)
. +.....++.+.+......+..++++||||+++++.... .+.++... .|++.+.........
T Consensus 75 -----~---------~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~~~~~~~~g~r~~~~g~~~~~~ 139 (423)
T 3feq_A 75 -----L---------GVNATQPNILAAIRSLPILDAMLSRGFTSVRDAGGADW-SLMQAVETGLVSGPRIFPSGKALSQT 139 (423)
T ss_dssp -----H---------HHHHHSCHHHHHHTHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCSCEEECCCSEEECT
T ss_pred -----h---------hhhhcCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCcccccC
Confidence 0 00122344555555566778899999999999986553 44444433 477777655444322
Q ss_pred CCCCcccc-------------c---CChHHHHHHHHHHHHHhccCCCCCeEEEEe--------ecccccCCHHHHHHHHH
Q 012333 175 EGLPASWA-------------V---RTTDDCIQSQKELYAKHHHAADGRIRIWFG--------IRQIMNATDRLLLETRD 230 (466)
Q Consensus 175 ~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~l~~~~~ 230 (466)
.+...... . .......++.++.+++..+.+...++++.. ++.....+++.+.++++
T Consensus 140 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~ 219 (423)
T 3feq_A 140 GGHGDFRPRGDLLEPCSCCFRTGAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVD 219 (423)
T ss_dssp TSTTCCCCC---CCCCCSSCCTTCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHH
T ss_pred CCCccccccccccccccccccccccceecCCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHH
Confidence 11111000 0 000111233444555555555677887653 44556789999999999
Q ss_pred HHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE--------
Q 012333 231 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH-------- 302 (466)
Q Consensus 231 ~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~-------- 302 (466)
.|+++|+++++|+.+... ....++ .+ ...+.|+..++++.++++++.|+.++.
T Consensus 220 ~A~~~g~~v~~H~~~~~~--------------i~~~l~-~g----~~~i~H~~~~~~~~~~~l~~~gv~~~pt~~~~~~~ 280 (423)
T 3feq_A 220 EAEAANTYVMAHAYTGRA--------------IARAVR-CG----VRTIEHGNLVDEAAAKLMHEHGAFVVPTLVTYDAL 280 (423)
T ss_dssp HHHHTTCCEEEEEEEHHH--------------HHHHHH-HT----CCEEEEEEECCHHHHHHHHHHTCEEECCTHHHHHH
T ss_pred HHHHCCCeEEEEeCChHH--------------HHHHHH-cC----CCEEeccCcCCHHHHHHHHHCCCccccchHHHHHH
Confidence 999999999999974221 111111 11 246899999999999999999998843
Q ss_pred ---------Cccchhhc-----cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCC
Q 012333 303 ---------CPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 368 (466)
Q Consensus 303 ---------~p~~~~~~-----~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (466)
||.++.+. ....+++.+++.|+++++|||++.... ...+.+++.. . +.+
T Consensus 281 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~~~-~~~~~e~~~~--~--------------~~l 343 (423)
T 3feq_A 281 AKHGAEFGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGEMH-AFQSGEFRIR--A--------------EVL 343 (423)
T ss_dssp HHHTGGGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGGGG-GGTTHHHHHH--H--------------TTS
T ss_pred HhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-cchHHHHHHH--H--------------hhC
Confidence 34333222 134578899999999999999963211 1233343321 1 129
Q ss_pred CHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 369 s~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
|++++|+++|.|||+++|+++++|+|++||.|||||+|.| |+++... +.....+|..||++|++|+++++..
T Consensus 344 s~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~-----p~~~~~~---~~~~~~~v~~v~~~G~~v~~~~~~~ 415 (423)
T 3feq_A 344 GNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGN-----PLEDIGV---VADEGARVEYVLQRGTLVKRQAAGR 415 (423)
T ss_dssp CHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSC-----TTTCGGG---TSSSTTSEEEEEETTEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEECCC-----hhhCHHH---HhccCCCceEEEECCEEEeCCcccc
Confidence 9999999999999999999888999999999999999999 4444211 1111258999999999999998876
Q ss_pred ecc
Q 012333 449 LLM 451 (466)
Q Consensus 449 ~~~ 451 (466)
+..
T Consensus 416 ~~~ 418 (423)
T 3feq_A 416 EGH 418 (423)
T ss_dssp ---
T ss_pred ccc
Confidence 543
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=331.63 Aligned_cols=360 Identities=18% Similarity=0.231 Sum_probs=246.3
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|.+++|+|++|+++++ ..+..+++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+......
T Consensus 3 m~~~~i~n~~i~~~~~-~~~~~~~~i~i~~g~I~~i~~~~~~-----~~~~~~iD~~g~~v~PGliD~H~H~~~~~~~-- 74 (426)
T 2r8c_A 3 LTTFLFRNGALLDPDH-PDLLQGFEILIEDGFIREVSDKPIK-----SSNAHVIDVKGKTIMPGLIDLHVHVVAIEFN-- 74 (426)
T ss_dssp -CEEEEEEEEECCTTS-SSCEEEEEEEEESSBEEEEESSCCC-----CSSCEEEECTTCEEEECEEEEEECTTCCSSC--
T ss_pred cccEEEEeeEEEeCCC-CcccCCceEEEECCEEEEEcCCCCC-----CCCCeEEECCCCEEcCCeEeeeeccccccCC--
Confidence 4689999999997643 4456778999999999999985321 2467899999999999999999999653221
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHH---hCCeEEeecccccCC
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL---LGLRACLVQSTMDCG 174 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~ 174 (466)
. +.....++.+.+......+..++++||||+++++.... .+.++... .|++.+.....+...
T Consensus 75 -----~---------~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~i~~~~~~gpri~~~g~~i~~~ 139 (426)
T 2r8c_A 75 -----L---------PRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGY-PFKQAVESGLVEGPRLFVSGRALSQT 139 (426)
T ss_dssp -----H---------HHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCCCEEEECCSEEECT
T ss_pred -----c---------hhhccCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCCcccCC
Confidence 0 00122445555666667788899999999999986653 44444443 567776655443321
Q ss_pred CCCCc-----------------------ccccCChHHHHHHHHHHHHHhccCCCCCeEEEEe--------ecccccCCHH
Q 012333 175 EGLPA-----------------------SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFG--------IRQIMNATDR 223 (466)
Q Consensus 175 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~ 223 (466)
.+... .......++. .+.+++....+...++++.. ++.....+++
T Consensus 140 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e 215 (426)
T 2r8c_A 140 GGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEV----RRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSED 215 (426)
T ss_dssp TSTTCCCCCSSBCCCSCSSSSBCCTTCCEEECCSHHHH----HHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHH
T ss_pred CCCcccccccccccccccccccccccccccccCCHHHH----HHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHH
Confidence 11110 0001122333 33333333344566777653 3445578999
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE-
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH- 302 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~- 302 (466)
++.++++.|+++|+++++|+.+.... ...++ . ....+.|+..++++.++++++.|+.++.
T Consensus 216 ~l~~~~~~A~~~g~~v~~H~~~~~~i--------------~~al~-~----G~~~i~H~~~~~~~~~~~~~~~gv~~~pt 276 (426)
T 2r8c_A 216 EIRAIVAEAQGRGTYVLAHAYTPAAI--------------ARAVR-C----GVRTIEHGNLIDDETARLVAEHGAYVVPT 276 (426)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSHHHH--------------HHHHH-T----TCSEEEECTTCCHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHHHcCCEEEEEeCChHHH--------------HHHHH-c----CCCEEecCCcCCHHHHHHHHHcCCeEeec
Confidence 99999999999999999999753211 11111 1 1245899999999999999999998843
Q ss_pred ----------------Cccchhhc-----cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCC
Q 012333 303 ----------------CPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 361 (466)
Q Consensus 303 ----------------~p~~~~~~-----~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (466)
+|.++.+. ....+++.+++.|+++++|||+++... .....+++..
T Consensus 277 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~~-~~~~~e~~~~------------- 342 (426)
T 2r8c_A 277 LVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQ-RLQSDEFRIL------------- 342 (426)
T ss_dssp THHHHHHHHHTTTTTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGG-GGTTHHHHHH-------------
T ss_pred hHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCC-cchHHHHHHH-------------
Confidence 23333222 234578899999999999999974321 1223333221
Q ss_pred CCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEE
Q 012333 362 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441 (466)
Q Consensus 362 ~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 441 (466)
.+.+|+.++|+++|.|||+++|+++++|+|++||.|||||+|.| |+++... +.....+|..||++|++|
T Consensus 343 ---~~~l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~-----p~~~~~~---~~~~~~~v~~v~~~G~~v 411 (426)
T 2r8c_A 343 ---AEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGN-----PLKSVDC---LLGQGEHIPLVMKDGRLF 411 (426)
T ss_dssp ---TTTSCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSC-----TTTCGGG---TCSSSTTCCEEEETTEEE
T ss_pred ---HhcCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCC-----hHhCHHH---HhCcCCcceEEEECCEEE
Confidence 11399999999999999999999888999999999999999999 4444211 111126899999999999
Q ss_pred EECCeee
Q 012333 442 MKNKKIL 448 (466)
Q Consensus 442 ~~~g~~~ 448 (466)
++.++..
T Consensus 412 ~~~~~~~ 418 (426)
T 2r8c_A 412 VNELEGH 418 (426)
T ss_dssp EETTC--
T ss_pred ecccccc
Confidence 9988754
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=327.11 Aligned_cols=359 Identities=18% Similarity=0.202 Sum_probs=255.0
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
..|++++|+|++|+++++ ..+.+++|+|+||||++|++..+.+..+ ++.++||++ ++|+|||||+|+|+.....+
T Consensus 34 ~~~~~~li~n~~v~~~~~--~~~~~~~V~I~~g~I~~vg~~~~~~~~~--~~~~viD~~-~~v~PGlID~H~H~~~~~~~ 108 (420)
T 2imr_A 34 DAHTPRLLTCDVLYTGMG--GAQSPGGVVVVGETVAAAGHPDELRRQY--PHAAEERAG-AVIAPPPVNAHTHLDMSAYE 108 (420)
T ss_dssp --CCEEEEEESEEECC-----EESSEEEEEETTEEEEEECHHHHHHHC--TTCEEEECC-SEESSCCCEEEEESSCCHHH
T ss_pred cccccEEEECCEEEeCCC--CeeeccEEEEECCEEEEecCcccccccC--CCCeeecCC-eEECCCCEecCcCcchhhhh
Confidence 346789999999997653 3567889999999999999754321111 256899999 99999999999999765544
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHhCCeEEeecccccCCC
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (466)
+.. .++.+|+....++.+..+.+ ......+..++++||||+++++.. ...+..+....|++.........
T Consensus 109 g~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~g~r~~~~~~~~~--- 178 (420)
T 2imr_A 109 FQA--LPYFQWIPEVVIRGRHLRGV----AAAQAGADTLTRLGAGGVGDIVWA-PEVMDALLAREDLSGTLYFEVLN--- 178 (420)
T ss_dssp HHH--CHHHHTSHHHHHHHTTCCHH----HHHHHHHHHHHHTTCCCEEEEECS-HHHHHHHHTCTTCCEEEEEEECB---
T ss_pred hcc--CCHHHHHHHhhhhhhhccCH----HHHHHHHHHHHhcCcEEEEEccCC-HHHHHHHHHhcCcEEEEEeeecC---
Confidence 432 34556655443332212211 233445677999999999998643 22222234456777655443332
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh
Q 012333 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 255 (466)
.++. .....+.+..+.++.+...+.+.+++.+.++.....+++.+.++++.+++.|+++++|+.+...+......
T Consensus 179 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~ 253 (420)
T 2imr_A 179 -PFPD----KADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRT 253 (420)
T ss_dssp -CCGG----GHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHH
T ss_pred -CCch----hhHHHHHHHHHHHHHHhcccCCceEEEecCCcCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHH
Confidence 1111 11233445555666665544466777788877778899999999999999999999999876654444433
Q ss_pred hcCC------------------------CCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-
Q 012333 256 TRKV------------------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 310 (466)
Q Consensus 256 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~- 310 (466)
..+. +....+.+...+.+..+.++.|+.++++++++++++.|+.+.+||.++...
T Consensus 254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~H~~~l~~~~i~~l~~~g~~~~~~p~~~~~~~ 333 (420)
T 2imr_A 254 GGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVARAGCAVVTCPRSNHHLE 333 (420)
T ss_dssp SCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHHHTCGGGCCEEEECCSCCHHHHHHHHHHTCCEEECHHHHHHTT
T ss_pred hhccccccccccchhhhhhhhccccccCCCCHHHHHHHcCCCCCCeEEEecCcCCHHHHHHHHHcCCeEEECHHHHHHhc
Confidence 2210 122455666677777778999999999999999999999999999987665
Q ss_pred cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCc
Q 012333 311 LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDND 390 (466)
Q Consensus 311 ~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~ 390 (466)
.+.++++.++++|+++++|||+++.+...+++.+++.+... ..++|++++++++|.|||+++|++++
T Consensus 334 ~~~~~l~~~~~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~-------------~~~ls~~~al~~aT~n~A~~lgl~~~ 400 (420)
T 2imr_A 334 CGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQL-------------YPGLDPRVLVRAAVKGGQRVVGGRTP 400 (420)
T ss_dssp CCCCCHHHHHHTTCCEEECCCCHHHHSCSCTHHHHHHHHHH-------------CTTSCHHHHHHHHHHHHHHHHC--CC
T ss_pred cCCCCHHHHHHCCCeEEEECCCCccCCCCCHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 56789999999999999999996543446788888766321 01499999999999999999999888
Q ss_pred ccccccCCccCEEEEcCC
Q 012333 391 IGSLEAGKKADMVVVDPF 408 (466)
Q Consensus 391 ~G~i~~G~~ADlvv~d~~ 408 (466)
+|+|++||+||| |+|.+
T Consensus 401 ~GsL~~Gk~ADl-vvd~~ 417 (420)
T 2imr_A 401 FLRRGETWQEGF-RWELS 417 (420)
T ss_dssp CCSTTSBCCGGG-BGGGC
T ss_pred ceeeCCCCccCE-EEECC
Confidence 999999999999 78876
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=321.17 Aligned_cols=376 Identities=16% Similarity=0.194 Sum_probs=245.3
Q ss_pred ceEEEEccEEEeecCC---cceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 19 STMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~---~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
+|++|+|++|+|+++. ...+.+++|+|+||||++|++..+.+. . .++++||++|++|+|||||+|+|+.....+
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~-~--~~~~viD~~G~~v~PG~ID~H~H~~~~~~~ 81 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKG-P--YPAHWQDMKGKLVTPGLIDCHTHLIFAGSR 81 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC-----CCTTSEECTTCEEEECEEEEEECCCCCSCC
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhccc-c--CCCeEEeCCCCEECCcccccccCcchhhhh
Confidence 5899999999987653 245567899999999999997543211 0 145799999999999999999998654322
Q ss_pred cccCCCCchHhhhhcccc--------------ccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc--cCHH---HHHH-
Q 012333 96 GIADDVDLMTWLHDRIWP--------------YESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--QHVS---EMAK- 155 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~--~~~~---~~~~- 155 (466)
. ..+..|+.+..|. .....++++.+.........++++|||++.+++. .... ...+
T Consensus 82 ~----~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~ 157 (416)
T 2q09_A 82 A----EEFELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRV 157 (416)
T ss_dssp H----HHHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCSCCSHHHHHHHHHH
T ss_pred H----HHHHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCcccChHhHHHHHHH
Confidence 1 0122233221111 0011234444444555678899999999999642 1211 1122
Q ss_pred ---HHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHH-HHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHH
Q 012333 156 ---AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQK-ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 231 (466)
Q Consensus 156 ---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 231 (466)
.....+++....... ...++..+.. .....+.... +.++.+...+ ..............+++.+.++++.
T Consensus 158 ~~~~~~~~~~r~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (416)
T 2q09_A 158 ARRLGEALPIRVKTTLLA---AHAVPPEYRD-DPDSWVETICQEIIPAAAEAG--LADAVDVFCEHIGFSLAQTEQVYLA 231 (416)
T ss_dssp HHHHHHHSSSEEEEEEEE---ETSCCGGGTT-CHHHHHHHHHHTHHHHHHHTT--CCSEEEEBBSTTSBCHHHHHHHHHH
T ss_pred HHHHHhhCCceEEEeeec---cccCCccccC-CHHHHHHHHHhhhhHHHHhcc--cccccccccCCCcCCHHHHHHHHHH
Confidence 223456665432110 0112222111 1122222211 2223332221 1111112233345688999999999
Q ss_pred HHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-
Q 012333 232 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 310 (466)
Q Consensus 232 a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~- 310 (466)
+++.|+++.+|+.+..... ..+.....+ ...+.|+.++++++++++++.|+.+++||.+++..
T Consensus 232 a~~~g~~v~~H~~~~~~~~------------~~~~~~~~g----~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 295 (416)
T 2q09_A 232 ADQYGLAVKGHMDQLSNLG------------GSTLAANFG----ALSVDHLEYLDPEGIQALAHRGVVATLLPTAFYFLK 295 (416)
T ss_dssp HHHTTCEEEEEESSSCCCS------------HHHHHHHTT----CSEEEECTTCCHHHHHHHHHHTCEEEECHHHHHHTT
T ss_pred HHHCCCcEEEEECCCCchH------------HHHHHHHcC----CCEEeecccCCHHHHHHHHHcCCeEEEcCccHHhhc
Confidence 9999999999987643110 112112222 23589999999999999999999999999987654
Q ss_pred -cCCccHHHHHHcCCcEEEccCCCCC-CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 311 -LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 311 -~~~~~~~~~~~~gi~~~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
...++++.+++.|+++++|||+++. .+..+++..++.+.... ++|++++++++|.|||+++|++
T Consensus 296 ~~~~~~~~~~~~~Gv~~~~gtD~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~al~~~T~~~A~~lg~~ 361 (416)
T 2q09_A 296 ETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLF--------------GLTPVEAMAGVTRHAARALGEQ 361 (416)
T ss_dssp CCCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHHHHHHHHH--------------CCCHHHHHHHTTHHHHHHTTCT
T ss_pred cccccCHHHHHHCCCeEEEecCCCCccCCCCCHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999998753 23467888887654322 4999999999999999999998
Q ss_pred CcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 389 NDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 389 ~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
+++|+|++||.|||||+|.+++. + +.+.....+|..||++|++||+++-
T Consensus 362 ~~~G~l~~G~~ADlvvld~~~~~-----~----~~~~~~~~~v~~v~v~G~~v~~~~~ 410 (416)
T 2q09_A 362 EQLGQLRVGMLADFLVWNCGHPA-----E----LSYLIGVDQLVSRVVNGEETLHGEG 410 (416)
T ss_dssp TTSSSCCTTSBCCEEEESSSCTT-----H----HHHSCSCCCEEEEEETTEECCC---
T ss_pred ccceecCCCCCccEEEECCCchh-----h----hhhhhccCcceEEEECCEEEEeCCC
Confidence 88999999999999999998432 2 1222234689999999999998653
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=319.43 Aligned_cols=376 Identities=19% Similarity=0.241 Sum_probs=240.5
Q ss_pred ccceEEEEccEEEeecCC---cceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccc
Q 012333 17 SSSTMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~---~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~ 93 (466)
+++|++|+|+.|+|+++. ...+.+++|+|+||||++|++..+.+...+ +.+++||++|++|+|||||+|+|+....
T Consensus 13 ~~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~-~~~~viD~~G~~v~PG~ID~H~H~~~~~ 91 (419)
T 2puz_A 13 GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLS-TADETTDCGGRWITPALIDCHTHLVFGG 91 (419)
T ss_dssp --CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGS-CCSEEEECTTCEEEECEEECCCCCCCSS
T ss_pred CCCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhcc-CCCeEEeCCCCEeCcCceecccCccchh
Confidence 457899999999987653 355678899999999999997543221111 1358999999999999999999986432
Q ss_pred cccccCCCCchHhhhhcccc--------------ccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--CH---HHHH
Q 012333 94 AKGIADDVDLMTWLHDRIWP--------------YESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HV---SEMA 154 (466)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--~~---~~~~ 154 (466)
.+. ..+..|+.+..|. .....+.++.+......+..++++|||++.+++.. .. ....
T Consensus 92 ~~~----~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~ 167 (419)
T 2puz_A 92 NRA----MEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKML 167 (419)
T ss_dssp CCH----HHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCSCCSHHHHHHHH
T ss_pred hhH----HHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCchhHHHHH
Confidence 211 0011121111000 00112334444444556788999999999885321 11 1223
Q ss_pred HHHHHh----CCeEEeecccccCCCCCCcccccCChHHHHHHH-HHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHH
Q 012333 155 KAVELL----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ-KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 229 (466)
Q Consensus 155 ~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 229 (466)
++.... +++..... ...+..+..+.. .....+... .+.++.+...+ ..............+++.+.+++
T Consensus 168 ~~~~~~~~~~~~r~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 241 (419)
T 2puz_A 168 RVARRLETLRPVRIVTSY---LAAHATPADYKG-RNADYITDVVLPGLEKAHAEG--LADAVDGFCEGIAFSVKEIDRVF 241 (419)
T ss_dssp HHHHHHTTTSSCEEEEEE---CCTTCCCGGGTT-CHHHHHHHTHHHHHHHHHHTT--CCSEECCEESTTSBCHHHHHHHH
T ss_pred HHHHHHhhhcCceEEEEe---cccccCchhhcc-cHHHHHHHHHhhhhhhhhhcc--cccccccccCCCCcCHHHHHHHH
Confidence 333332 33332211 011112222111 112222211 12222322211 11111111222345788999999
Q ss_pred HHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhh
Q 012333 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309 (466)
Q Consensus 230 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 309 (466)
+.+++.|+++.+|+.+.... ...+.....+ ...+.|+.++++++++++++.|+.++++|.+++.
T Consensus 242 ~~a~~~g~~v~~H~~~~~~~------------~~~~~~~~~g----~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 305 (419)
T 2puz_A 242 AAAQQRGLPVKLHAEQLSNL------------GGAELAASYN----ALSADHLEYLDETGAKALAKAGTVAVLLPGAFYA 305 (419)
T ss_dssp HHHHHTTCCBEEEESSSSCC------------SHHHHHHHTT----CSEEEECTTCCHHHHHHHHHHTCEEEECHHHHHH
T ss_pred HHHHHCCCcEEEEecccccC------------CHHHHHHhcC----CceehHhccCCHHHHHHHHHcCCcEEECCchhhh
Confidence 99999999999998753211 1222222222 2357899999999999999999999999987765
Q ss_pred c--cCCccHHHHHHcCCcEEEccCCCCC-CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 310 M--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 310 ~--~~~~~~~~~~~~gi~~~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
. .+.++++.+++.|+++++|||+++. .+..+++..++.+.... ++|++++++++|.|||+++|
T Consensus 306 l~~~~~~~~~~~~~~Gv~~~lgsD~~~~~~~~~~l~~~~~~~~~~~--------------~ls~~~al~~~T~~~A~~lg 371 (419)
T 2puz_A 306 LREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLF--------------RMTVEECLTATTRNAAKALG 371 (419)
T ss_dssp HTCCCCCCHHHHHHHTCCEEECCCCCSSSCCBCCHHHHHHHHHHHH--------------CCCHHHHHHHTTHHHHHHTT
T ss_pred hcccccccHHHHHHCCCeEEEECCCCCCCCccccHHHHHHHhcccc--------------CCCHHHHHHHHHHHHHHHcC
Confidence 4 3568999999999999999999763 33458888887654322 39999999999999999999
Q ss_pred CCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 387 WDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 387 l~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
+++++|+|++||+|||||+|.+++ .+ +.+.....+|..||++|++|.
T Consensus 372 ~~~~~Gsi~~Gk~ADlvvld~~~~-----~~----~~~~~~~~~v~~v~v~G~~v~ 418 (419)
T 2puz_A 372 LLAETGTLEAGKSADFAIWDIERP-----AE----LVYRIGFNPLHARIFKGQKVS 418 (419)
T ss_dssp CTTTSSSCCTTSBCCEEEECCSST-----TH----HHHCBSCCCEEEEEETTEECC
T ss_pred CCCCccccCCCCcCCEEEECCCch-----hc----chhhhcCCceEEEEECCEEcC
Confidence 988899999999999999999833 22 222234468999999999875
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=323.28 Aligned_cols=371 Identities=19% Similarity=0.215 Sum_probs=246.5
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccc--
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA-- 94 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~-- 94 (466)
.++|++|+|++|++++ .. ++|+|+||+|++|++..+. ++.++||++|++|+|||||+|+|+.....
T Consensus 3 ~~~~~li~n~~v~~~~--~~----~~v~I~~g~I~~vg~~~~~------~~~~viD~~G~~v~PGlID~H~H~~~~~~~~ 70 (403)
T 2qt3_A 3 KDFDLIIRNAYLSEKD--SV----YDIGIVGDRIIKIEAKIEG------TVKDEIDAKGNLVSPGFVDAHTHMDKSFTST 70 (403)
T ss_dssp CCEEEEEEEEEETTTT--EE----EEEEEETTEEEEEESSCCS------CEEEEEECTTCBEEECEEEEEECGGGTTTTC
T ss_pred cccceEEEeeEecCCC--ee----EEEEEECCEEEEeecCCCC------CccceEcCCCCEecccceeeeeccchhhccc
Confidence 4678999999999532 22 6999999999999975431 23579999999999999999999987654
Q ss_pred -------cccc--CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-------CHHHHHHHHH
Q 012333 95 -------KGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVE 158 (466)
Q Consensus 95 -------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-------~~~~~~~~~~ 158 (466)
.+.. ...++.+|+.. |. .. +.++.+........+++++||||++++... ....+.++..
T Consensus 71 ~~~~~~~~g~~~~~~~~l~~~~~~--~~--~~-~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
T 2qt3_A 71 GERLPKFWSRPYTRDAAIEDGLKY--YK--NA-THEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTKAVEAVLEAKE 145 (403)
T ss_dssp SSSSCTTCSSCCCHHHHHHHHHHH--HH--HC-CHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTTTTHHHHHHHHHHH
T ss_pred ccccccccCCCcccCcCHHHHHHH--hh--hc-CHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCccccchHHHHHHHHH
Confidence 1110 01125566653 22 22 556666666667888999999999654321 1223334443
Q ss_pred HhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCc
Q 012333 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (466)
Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 238 (466)
+.+.......... ...+.. ...+ ..+.++++.+.+...+. .+.++..+..+++.+.++++.|+++|++
T Consensus 146 ~~~~~~~~~~~~~-~~~~~~------~~~~----~~~~~~~~~~~g~~~~~-~~~p~~~~~~~~~~l~~~~~~A~~~g~~ 213 (403)
T 2qt3_A 146 ELKDLIDIQVVAF-AQSGFF------VDLE----SESLIRKSLDMGCDLVG-GVDPATRENNVEGSLDLCFKLAKEYDVD 213 (403)
T ss_dssp HHTTTCEEEEEEE-CTTCTT------TSTT----HHHHHHHHHHTTCSEEE-CBCTTTTTSCHHHHHHHHHHHHHHTTCE
T ss_pred HhhcceeEEEEEc-CCcccc------cCcc----hHHHHHHHHhcCCCeEE-EecCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 3221111100000 000100 0111 12333333333322222 1334444455668899999999999999
Q ss_pred cceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-------hhHHHHHhcCCeEEECccchhhcc
Q 012333 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAMRML 311 (466)
Q Consensus 239 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-------~~~~~~~~~g~~~~~~p~~~~~~~ 311 (466)
+++|+.+........... ..+.....+. ..+..+.|+.++++ ++++++++.|+.+++||... .
T Consensus 214 v~~H~~~~~~~~~~~~~~------~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~~~---~ 283 (403)
T 2qt3_A 214 IDYHIHDIGTVGVYSINR------LAQKTIENGY-KGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSST---P 283 (403)
T ss_dssp EEEEECCCHHHHHHHHHH------HHHHHHHTTC-TTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEEEEETTTC---C
T ss_pred eEEEeCCcccchhHHHHH------HHHHHHHcCC-CCCeEEEehhhhccCChhhHHHHHHHHHHcCCEEEECCCCC---C
Confidence 999998765432221110 1233334443 45788999999875 78999999999999999743 4
Q ss_pred CCccHHHHHHcCCcEEEccCCCC--C--CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 312 GFAPIKEMLHADICVSLGTDGAP--S--NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 312 ~~~~~~~~~~~gi~~~~gsD~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
+..+++.+++.|+++++|||++. . ....+++..++.+....+.. ..++++++++++|.|||+++|+
T Consensus 284 ~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~al~~~T~~~A~~lg~ 353 (403)
T 2qt3_A 284 PTMPVIKLLEAGINLGCASDNIRDFWVPFGNGDMVQGALIETQRLELK----------TNRDLGLIWKMITSEGARVLGI 353 (403)
T ss_dssp TTCCHHHHHHTTCEEEEECCSCSSSSCSCCCCCHHHHHHHHHHHTTCC----------SHHHHHHHHHHTTHHHHHHHTC
T ss_pred CCCCHHHHHHcCCcEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcC----------CccCHHHHHHHHHHHHHHhcCC
Confidence 56889999999999999999862 1 12346788777665443210 1278999999999999999999
Q ss_pred CCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 388 DNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 388 ~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
++ +|+|++||.|||||+|.++ |+++ +.+ ..+|..||++|++||++|+++
T Consensus 354 ~~-~g~i~~G~~ADlvv~d~~~----~~~~----~~~---~~~v~~v~v~G~~v~~~g~~~ 402 (403)
T 2qt3_A 354 EK-NYGIEVGKKADLVVLNSLS----PQWA----IID---QAKRLCVIKNGRIIVKDEVIV 402 (403)
T ss_dssp GG-GCSSSTTSBCCEEEESSSS----HHHH----HHH---CCCEEEEEETTEEEEESSSBC
T ss_pred Cc-ccCCCCCCcCCEEEEcCCC----hHHH----hhc---CCCccEEEECCEEEecCCccc
Confidence 76 5999999999999999982 1221 111 358999999999999999875
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=306.40 Aligned_cols=357 Identities=14% Similarity=0.181 Sum_probs=236.8
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
++.|++|+|++|+++++ ..+.. ++|+|+||+|++|++. . + .+.++||++|++|+|||||+|+|+. ..
T Consensus 4 ~~~~~~i~n~~v~~~~~-~~~~~-~~v~I~~g~I~~ig~~-~-----~-~~~~viD~~g~~v~PGlID~H~H~~-~~--- 70 (408)
T 3be7_A 4 TSEDFLIKSKGYLDIQT-GEIIK-ADLLIRNGKIAEIGKI-N-----T-KDATVISIPDLILIPGLMDSHVHIV-GN--- 70 (408)
T ss_dssp -CCCEEEEEEEEECTTT-CCEEC-CEEEEETTEEEEEECC-C-----C-SSSEEEEEEEEEEEECEEEEEECCS-SC---
T ss_pred ccceEEEEeeEEEeCCC-Cceee-eEEEEECCEEEEEeCC-C-----C-CCCeEEECCCCEECcCceeeeEccc-CC---
Confidence 45689999999997653 23445 8999999999999975 2 1 3568999999999999999999985 21
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-HHHHHHHHHHhCC----eEEeecccc
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMAKAVELLGL----RACLVQSTM 171 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-~~~~~~~~~~~g~----~~~~~~~~~ 171 (466)
....| .. -..++.+.+.........++++||||+++++... .....+...+.+. +........
T Consensus 71 -----~~~~~-~~------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 138 (408)
T 3be7_A 71 -----DSKGE-ES------IADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPAL 138 (408)
T ss_dssp -----CCCSG-GG------TTCCTHHHHHHHHHHHHHHHTTTEEEEEECCCSTTHHHHHHHHHHTTSSCCCEEEECCSCB
T ss_pred -----CCcch-hh------hcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCccccCHHHHHHHHCCCCCCCEEEEcccee
Confidence 11122 11 0134455555666678889999999999987532 2223333444443 444322111
Q ss_pred --cCCCC----CCcccccC--ChHHHHHHHHHHHHHhccCCCCCeEEEEee--------cccccCCHHHHHHHHHHHHHc
Q 012333 172 --DCGEG----LPASWAVR--TTDDCIQSQKELYAKHHHAADGRIRIWFGI--------RQIMNATDRLLLETRDMAREF 235 (466)
Q Consensus 172 --~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~a~~~ 235 (466)
..+.. +.+..... .......+..+.+++....+...++.+... .+....+++.+.++++.|+++
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~ 218 (408)
T 3be7_A 139 GITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNH 218 (408)
T ss_dssp BCTTSTTSCCCSCTTTCCCCTTBCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHT
T ss_pred eccCCCCccccccccccccCCcccCCHHHHHHHHHHHHhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 11111 11000000 001122334444544444444556654311 123567889999999999999
Q ss_pred CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-----
Q 012333 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM----- 310 (466)
Q Consensus 236 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~----- 310 (466)
|+++.+|+.+... ....+ ..+ ...+.|+.+++++.++++++.|+.+..++......
T Consensus 219 g~~v~~H~~~~~~--------------i~~~~-~~g----~~~i~H~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 279 (408)
T 3be7_A 219 GMKVAAHAHGLIG--------------IKAAI-KAG----VDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGA 279 (408)
T ss_dssp TCEEEEEECSHHH--------------HHHHH-HHT----CSEEEECTTCCHHHHHHHHHTTCEEECCCSTHHHHHTTTT
T ss_pred CCEEEEEeCCHHH--------------HHHHH-HcC----CCEEEECCCCCHHHHHHHHHCCCEEeeeecHHHHhhhhcc
Confidence 9999999976321 11111 122 24689999999999999999999887665332100
Q ss_pred -----------------cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 012333 311 -----------------LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 373 (466)
Q Consensus 311 -----------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 373 (466)
....+++.+++.|+++++|||+++. +...++.+++.. .. .++|++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~~-p~~~~~~~~~~~--~~-------------~gls~~~a 343 (408)
T 3be7_A 280 KAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIF-DHGDNAKQFAYM--VE-------------WGMTPLEA 343 (408)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTB-CTTCGGGHHHHH--HH-------------TTCCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCchHHHHHHHH--HH-------------cCCCHHHH
Confidence 0124678889999999999998642 223456665542 11 14999999
Q ss_pred HHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 374 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 374 l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
++++|.|||+++|++ ++|+|++||+|||||+|.+ |++++ ..+ .+|..||++|++|+++..
T Consensus 344 l~~~T~n~A~~lgl~-~~G~i~~G~~ADlvvld~~-----p~~~~-~~~------~~v~~v~~~G~~v~~~~~ 403 (408)
T 3be7_A 344 IQASTIKTATLFGIE-NIGQIKEGFDADIVGVIEN-----PLANI-RTL------EEVAFVMKEGKVYKREGH 403 (408)
T ss_dssp HHTTTHHHHHHHTCS-SCSSCCTTSBCCEEEESSC-----TTTCG-GGT------TSCCEEEETTEEEEECCC
T ss_pred HHHHHHHHHHHhCCC-cccccCCCCccCEEEECCC-----chhhH-HHh------hceeEEEECCEEEecccc
Confidence 999999999999997 7899999999999999999 44443 222 479999999999998754
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=312.28 Aligned_cols=381 Identities=18% Similarity=0.146 Sum_probs=236.0
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEE-ECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc-
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFV-VQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK- 95 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I-~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~- 95 (466)
..+++|+|++|+++++ ..++.+++|+| +||||++|++..... .+ .+.++||++|++|+|||||+|+|+......
T Consensus 12 ~~~~li~n~~i~~~~~-~~~~~~~~v~I~~~g~I~~Vg~~~~~~--~~-~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~ 87 (458)
T 2p9b_A 12 EPFALAHATIVTGDKA-GTILRNMTIVVGADGRIEQVAPSIETS--IP-AEYHYLDGTGKIVMPGLINAHTHLFSQGKPL 87 (458)
T ss_dssp CCEEEEEEEEECCCTT-CCEEEEEEEEECTTSBEEEEEEGGGCC--CC-TTCEEEECTTCEEEECEEEEEECSCC-----
T ss_pred CCcEEEEeeEEEeCCC-CccccCcEEEEecCCEEEEEeccccCC--CC-CCCeEEECCCCEEccceeeeeeccccccccc
Confidence 4689999999998654 24556789999 999999998732211 01 256899999999999999999999765432
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-CHHHHHHHHHHhCC----eEEeeccc
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGL----RACLVQST 170 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~~~~~~~~~~~~g~----~~~~~~~~ 170 (466)
......+...|.....|. ..++....+.........++++||||+++++.. ......+...+.+. +.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~g~~~g~r~~~~g~~ 165 (458)
T 2p9b_A 88 NPKLATPKGQRMVATFAH--SPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPL 165 (458)
T ss_dssp --------------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSSHHHHHHHHHHTTSSCCCEEECCCSC
T ss_pred cccccchhhhhhhhhhhh--hcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCccccHHHHHHHHcCCCCCCeEEecccc
Confidence 111111222222211121 112222333344457788999999999998753 23333333334343 44332222
Q ss_pred ccCCCCCCc-cc--ccCChHHHHHHHHHHHHHhccCCCCCeEEEEe-----e-----cccccCCHHHHHHHHHHHHHcCC
Q 012333 171 MDCGEGLPA-SW--AVRTTDDCIQSQKELYAKHHHAADGRIRIWFG-----I-----RQIMNATDRLLLETRDMAREFKT 237 (466)
Q Consensus 171 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~-----~~~~~~~~~~l~~~~~~a~~~~~ 237 (466)
+....+... .+ ..... .+..+.+++....+...++++.. + .+.+..+++.+.++++.+++.|+
T Consensus 166 ~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 241 (458)
T 2p9b_A 166 MAIPEGHGAPLIALTSGTP----EEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGV 241 (458)
T ss_dssp EECCCSSCCCCEECCSCCH----HHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCccccCccCCCH----HHHHHHHHHHHHcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCC
Confidence 111101110 00 01111 22233333333344556776542 1 12346788999999999999999
Q ss_pred ccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHH------hcCCeEEECccc--hh-
Q 012333 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS------RAGVKVSHCPAS--AM- 308 (466)
Q Consensus 238 ~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~------~~g~~~~~~p~~--~~- 308 (466)
++.+|+.+.... ...++ .+ ...+.|+.+++++.+++++ +.|+.+. |.. ..
T Consensus 242 ~v~~H~~~~~~i--------------~~~~~-~G----~~~i~H~~~~~~~~~~~~~~~~~~~~~g~~v~--p~~~~~~~ 300 (458)
T 2p9b_A 242 IVGAHAQSPEGV--------------RRSLL-AG----VDTIEHGSVLDDELIGMFRHNPNALRGYSALI--PTLSAGLP 300 (458)
T ss_dssp CEEEEECSHHHH--------------HHHHH-HT----CSEEEECCCCCHHHHHHHHCCTTSTTSCCEEE--CCHHHHHH
T ss_pred eEEEEeCCHHHH--------------HHHHH-cC----CCEEEECCCCCHHHHHHHhcccccccCCeEEE--eecchhhH
Confidence 999999652211 11111 11 2458999999999999999 8998653 443 11
Q ss_pred hc----------------------cCCccHHHHHHcCCcEEEccCCCC-CCCCCCHHHHHHHHHHHhcccccccCCCCCC
Q 012333 309 RM----------------------LGFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINKGREVFANGTTDP 365 (466)
Q Consensus 309 ~~----------------------~~~~~~~~~~~~gi~~~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (466)
.. ....+++.+++.|+++++|||++. ..+...++.+++... ..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~~~~~~~~~~e~~~~~--~~------------ 366 (458)
T 2p9b_A 301 LTLLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLV--AY------------ 366 (458)
T ss_dssp HHHSCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTSCTTCHHHHHHHHH--HH------------
T ss_pred HHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCCCCCccccHHHHHHHHH--Hh------------
Confidence 00 012467888999999999999753 233445676665432 11
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC-
Q 012333 366 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN- 444 (466)
Q Consensus 366 ~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~- 444 (466)
.++|++++++++|.|||+++|+++++|+|++||.|||||+|.+++ .++ ..+ .+|..||++|++||++
T Consensus 367 ~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~-----~~~-~~~------~~v~~v~v~G~~v~~~~ 434 (458)
T 2p9b_A 367 AGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPL-----DDL-RAL------EHPALVIAAGHPVWRPG 434 (458)
T ss_dssp HCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTT-----TCG-GGG------TSCSEEEETTEECCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCch-----hCH-HHh------ccceEEEECCEEEecCc
Confidence 149999999999999999999988899999999999999999943 332 221 4899999999999999
Q ss_pred -CeeeeccHHHH
Q 012333 445 -KKILLLMRGRL 455 (466)
Q Consensus 445 -g~~~~~~~~~~ 455 (466)
+++..++++..
T Consensus 435 ~~~~~~~d~~~~ 446 (458)
T 2p9b_A 435 PKRFADIDALLD 446 (458)
T ss_dssp CCCCHHHHHHHH
T ss_pred hhhhhhHhHHHH
Confidence 88877765543
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=303.28 Aligned_cols=355 Identities=19% Similarity=0.212 Sum_probs=234.8
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCC--eEEeCCCcEEeecccccccCCccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMAD--QIIDLQSQILLPGFVNTHVHTSQQLA 94 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~--~~iD~~G~~v~PG~ID~H~H~~~~~~ 94 (466)
..++++|+|++|+++++ ..++.+++|+|+||+|++|++.. . + ++. ++||++|++|+|||||+|+|+....
T Consensus 5 ~~~~~li~n~~v~~~~~-~~~~~~~~v~I~~g~I~~vg~~~-~----~-~~~~~~viD~~g~~v~PGlID~H~H~~~~~- 76 (418)
T 2qs8_A 5 VDSKTLIHAGKLIDGKS-DQVQSRISIVIDGNIISDIKKGF-I----S-SNDFEDYIDLRDHTVLPGLMDMHVHFGQEY- 76 (418)
T ss_dssp --CCEEEEEEEECCSSC-SSCEEEEEEEEETTEEEEEEESC-C----C-CTTSSEEEEEEEEEEEECEEEEEECTTCCC-
T ss_pred CCccEEEEeeEEEeCCC-CccccCcEEEEECCEEEEEeCCC-C----C-CCCcceEEECCCCEECCCeeeeeeccccCC-
Confidence 45689999999998654 24556789999999999999743 1 1 356 8999999999999999999996532
Q ss_pred ccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-CHHHHHHHHHHhCC----eEEeecc
Q 012333 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGL----RACLVQS 169 (466)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~~~~~~~~~~~~g~----~~~~~~~ 169 (466)
+...| . ....++.+.+.........++++||||+++++.. ......+...+.|. +......
T Consensus 77 -------~~~~~-~------~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ 142 (418)
T 2qs8_A 77 -------QSKAQ-A------PIKVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRDAINSGKLAGPRIFAAGK 142 (418)
T ss_dssp -------CCTTT-S------CSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEECCS
T ss_pred -------CCCch-h------hhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccHHHHHHHHCCCCCCCeEEecCc
Confidence 11223 0 1123455555555667888999999999998643 23323344444443 5544332
Q ss_pred cc--cCCC-----CCCcccccC-----ChHHHHHHHHHHHHHhccCCCCCeEEEEee--------cccccCCHHHHHHHH
Q 012333 170 TM--DCGE-----GLPASWAVR-----TTDDCIQSQKELYAKHHHAADGRIRIWFGI--------RQIMNATDRLLLETR 229 (466)
Q Consensus 170 ~~--~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~ 229 (466)
.. ..+. .+.+.+... ......++..+.+++....+...++++... .+....+++.+.+++
T Consensus 143 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~ 222 (418)
T 2qs8_A 143 TIATTGGHADPTNGKAVDDYDYPVPEQGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVV 222 (418)
T ss_dssp CBEETTCTTCTTTTCCGGGCCCCCGGGTEECSHHHHHHHHHHHHHHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHH
T ss_pred cccccCCCccccccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHH
Confidence 21 1111 111111000 011112233344443322334566665321 123567899999999
Q ss_pred HHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccch--
Q 012333 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA-- 307 (466)
Q Consensus 230 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~-- 307 (466)
+.|++.|+++.+|+.+.... ...++ .+ ...+.|+.+++++.++++++.|+.+ ||...
T Consensus 223 ~~A~~~g~~v~~H~~~~~~i--------------~~~~~-~g----~~~i~H~~~~~~~~i~~l~~~gv~v--~p~~~~~ 281 (418)
T 2qs8_A 223 SAAKDYGMWVAVHAHGAEGM--------------KRAIK-AG----VDSIEHGTFMDLEAMDLMIENGTYY--VPTISAG 281 (418)
T ss_dssp HHHHHTTCEEEEEECSHHHH--------------HHHHH-HT----CSEEEECTTCCHHHHHHHHHHTCEE--ECCHHHH
T ss_pred HHHHHcCCEEEEEECCHHHH--------------HHHHH-cC----CCEEEECCCCCHHHHHHHHHCCCEE--eeeechH
Confidence 99999999999999643211 11111 11 2468999999999999999999865 45421
Q ss_pred --hh----ccC-----------------CccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCC
Q 012333 308 --MR----MLG-----------------FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 364 (466)
Q Consensus 308 --~~----~~~-----------------~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
+. ..+ ..+++.+++.|+++++|||++. .+..+++.+++.. ..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~~~-~~~~~~~~e~~~~--~~------------ 346 (418)
T 2qs8_A 282 EFVAEKSKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGV-QKHGTNWKEFVYM--VE------------ 346 (418)
T ss_dssp HHHHHHTTSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBTT-BCTTCTTHHHHHH--HH------------
T ss_pred HHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCc-CCcchHHHHHHHH--HH------------
Confidence 10 001 2357889999999999999864 2334567776643 21
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 365 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 365 ~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
.++|++++++++|.|||+++|+++++|+|++||+|||||+|.+ |++++ ..+ .+|+.||++|+++.
T Consensus 347 -~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~-----~~~~~-~~~------~~i~~v~~~G~~~~ 411 (418)
T 2qs8_A 347 -NGMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGN-----PIEDI-SVL------ENVDVVIKDGLLYE 411 (418)
T ss_dssp -TTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSC-----TTTCG-GGG------GGEEEEEETTEEEE
T ss_pred -cCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCC-----hhhCH-HHh------cCccEEEECCEEEe
Confidence 1499999999999999999999888999999999999999999 44442 322 58999999999765
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=303.90 Aligned_cols=377 Identities=16% Similarity=0.163 Sum_probs=225.8
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
|++++|+|++|+++++ . .+++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+.....
T Consensus 1 m~~~li~~~~v~~~~~---~-~~~~v~I~~g~I~~ig~~~~~----~-~~~~viD~~g~~v~PGlID~H~H~~~~~~--- 68 (458)
T 1gkr_A 1 MFDVIVKNCRLVSSDG---I-TEADILVKDGKVAAISADTSD----V-EASRTIDAGGKFVMPGVVDEHVHIIDMDL--- 68 (458)
T ss_dssp CEEEEEEEEEEEETTE---E-EEEEEEEETTEEEEEESCCTT----C-CEEEEEECTTCEEEECEEEEEEECCCGGG---
T ss_pred CceEEEECcEEECCCC---c-eeeeEEEECCEEEEecCCCCC----C-CCCeEEeCCCCEEecCEEEeeecccCCCC---
Confidence 4689999999997542 2 678999999999999875321 1 24579999999999999999999953110
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-ccC-----HHHH---HHHHHHhCCeEEeec
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQH-----VSEM---AKAVELLGLRACLVQ 168 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~~-----~~~~---~~~~~~~g~~~~~~~ 168 (466)
....++. ....+.++++||||+++++ ... ...+ .+.....+++.....
T Consensus 69 -------------------~~~~~~~----~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
T 1gkr_A 69 -------------------KNRYGRF----ELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYG 125 (458)
T ss_dssp -------------------TTTSCCH----HHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred -------------------CCchhHH----HHHHHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCceeEEEEe
Confidence 0011111 1223457899999999987 321 1122 222222222211100
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecc---cccCCHHHHHHHHHHHHHcCCccceeccC
Q 012333 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRLLLETRDMAREFKTGIHMHVAE 245 (466)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 245 (466)
. ... .. .++..+.+ +.+...++.++.++. .+..+.+.+.++++.+++++.++.+|+.+
T Consensus 126 ~-------~~~----~~----~~~~~~~~----~~g~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 186 (458)
T 1gkr_A 126 G-------GVP----GN----LPEIRKMH----DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAEN 186 (458)
T ss_dssp E-------CCT----TC----HHHHHHHH----HTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred c-------cCC----CC----HHHHHHHH----HcCCcEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEECCC
Confidence 0 000 01 12222322 233455665555443 35678999999999999999999999965
Q ss_pred CcchhHHH--HhhcCCCCchHHH------------Hhhhc-cCCCCeeEEEeecCCh-hhHHHHH---hcC--CeEEECc
Q 012333 246 IPYENQVV--MDTRKVDHGTVTF------------LDKIE-FLQNNLLSAHTVWVNH-TEIGLLS---RAG--VKVSHCP 304 (466)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~H~~~~~~-~~~~~~~---~~g--~~~~~~p 304 (466)
........ ....+.. ..... +.... +........|..|++. +.++.+. +.| +.+.+||
T Consensus 187 ~~~~~~~~~~~~~~G~~-~~~~h~~~~~~~~~~~~~~~~~~la~~~g~~~h~~H~~~~~~~~~i~~~~~~G~~v~~~~~p 265 (458)
T 1gkr_A 187 ETIIQALQKQIKAAGGK-DMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGP 265 (458)
T ss_dssp HHHHHHHHHHHHHTTCC-SHHHHHHHSCHHHHHHHHHHHHHHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECH
T ss_pred HHHHHHHHHHHhhcCcc-chhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEEch
Confidence 32211111 1111210 01111 11110 1111112346666654 4455544 366 5567788
Q ss_pred cchhh-----------cc---------CCccHHHHHHcCCcEEEccCCCCCCCC------CCHHH--------HHHHHHH
Q 012333 305 ASAMR-----------ML---------GFAPIKEMLHADICVSLGTDGAPSNNR------MSIVD--------EMYLASL 350 (466)
Q Consensus 305 ~~~~~-----------~~---------~~~~~~~~~~~gi~~~~gsD~~~~~~~------~~~~~--------~~~~~~~ 350 (466)
..... .. ...+++++++.|+.+++|||+.+.+.. .+++. ++.....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lgtD~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~ 345 (458)
T 1gkr_A 266 QYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMM 345 (458)
T ss_dssp HHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHH
T ss_pred HHheeCHHHhhccCceEEEcCCCCCHHHHHHHHHHHhCCCceEEEeCCCCCChHHhccccCCHhHCCCCcccHHHHHHHH
Confidence 74310 01 112556788999999999998665322 23333 1122222
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccC---
Q 012333 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR--- 427 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~--- 427 (466)
+.+.. ...++|++++++++|.|||+++|+++++|+|++|++|||||+|.+.....|..++.+.+.+...
T Consensus 346 ~~~~~--------~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~g~ 417 (458)
T 1gkr_A 346 LTNGV--------NKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGM 417 (458)
T ss_dssp HHHTG--------GGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEESCCCEECCGGGCSSSCCCCTTTTC
T ss_pred HHHHH--------HhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCCcCCEEEEcCCcceEEcHHHccccCCCCCcCCC
Confidence 22110 1125999999999999999999998789999999999999999984332333343333333321
Q ss_pred --CCCeeEEEEccEEEEECCeeeeccH-HHHHH
Q 012333 428 --TENVVSVMCNGQWVMKNKKILLLMR-GRLFQ 457 (466)
Q Consensus 428 --~~~v~~v~v~G~~v~~~g~~~~~~~-~~~~~ 457 (466)
..+|..||++|++||++|++++... |++++
T Consensus 418 ~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~ 450 (458)
T 1gkr_A 418 PVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVT 450 (458)
T ss_dssp EECCEEEEEEETTEEEEETTEECSCTTCCCBCC
T ss_pred EeeeEEEEEEECCEEEEECCccccCCCCCeecC
Confidence 3579999999999999999987765 66663
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=305.00 Aligned_cols=364 Identities=19% Similarity=0.209 Sum_probs=226.5
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
++++++|+|++|+++++ .... ++|+|+||+|++|++..+ + .+.++||++|++|+|||||+|+|+.......
T Consensus 3 ~~~~~~i~~~~i~~~~~--~~~~-~~v~i~~g~I~~i~~~~~-----~-~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~ 73 (396)
T 3ooq_A 3 LSVKILFKNATVFPITS--RPFK-GDVLVSNGKVEKVGENIE-----D-PDAEIVDLTGKFLFPGFVDAHSHIGLFEEGV 73 (396)
T ss_dssp ---CEEEEEEEECCSSS--CCEE-EEEEEETTEEEEEESCCC-----C-TTSEEEECTTCEEEECEEEEEECTTTSCTTS
T ss_pred CcceEEEECcEEEeCCC--CeEE-eEEEEECCEEEEecCCCC-----C-CCCeEEECCCCEEecCEEecccccCccccCc
Confidence 45679999999997653 3444 899999999999998643 1 4678999999999999999999998655422
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----------------CHHHHHHHHHHh
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----------------HVSEMAKAVELL 160 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----------------~~~~~~~~~~~~ 160 (466)
. ....|+....|+....+...+.+......+.+++++|||++.++++. ........ ...
T Consensus 74 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~gs~~~i~G~~~~~~~~~~~~~~~~~~-~~~ 148 (396)
T 3ooq_A 74 G----YYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSIIVEECIVK-DPA 148 (396)
T ss_dssp C----GGGCCSCCTTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCCSSSSEEEEEEEEESCCSSHHHHEEE-EEE
T ss_pred c----ccccccccccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCCCCCcccCeeEEEeccCCCHHHceec-CCc
Confidence 1 11355566667777777776666555556678999999999997421 11110000 111
Q ss_pred CCeEEeecccccC-C-CCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCc
Q 012333 161 GLRACLVQSTMDC-G-EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (466)
Q Consensus 161 g~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 238 (466)
+++..++...... + .+..+. ......+.+.+..+..+.+..... ......+.+..+.. ..+.+..+.+.+++
T Consensus 149 ~i~~~~g~~~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~----~~e~l~~~~~~~~~ 222 (396)
T 3ooq_A 149 GLKMAFGENPKRVYGERKQTPS-TRMGTAGVIRDYFTKVKNYMKKKE-LAQKEGKEFTETDL----KMEVGEMVLRKKIP 222 (396)
T ss_dssp EEEEECSHHHHHHHHHTTCSCS-SHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCCCCH----HHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcccccccCCCCc-cHHHHHHHHHHHHHHHHHHHHhhh-hhhhccCCCCCcCh----hHHHHHHHHcCCCc
Confidence 2222221111000 0 000000 000111222222222222111100 00000111222222 22333344578999
Q ss_pred cceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECcc----chhhc--cC
Q 012333 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA----SAMRM--LG 312 (466)
Q Consensus 239 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~----~~~~~--~~ 312 (466)
+.+|+.+...... ..+.+... +.+..+.|+..... .++++++.|+.+++||. ++... .+
T Consensus 223 v~iHa~~~~~i~~-----------~~~~~~~~---g~~~~i~H~~~~~~-~~~~l~~~gv~v~~~P~~~~~~~~~~~~~~ 287 (396)
T 3ooq_A 223 ARMHAHRADDILT-----------AIRIAEEF---GFNLVIEHGTEAYK-ISKVLAEKKIPVVVGPLLTFRTKLELKDLT 287 (396)
T ss_dssp EEEEECSHHHHHH-----------HHHHHHHH---TCCEEEEECTTGGG-GHHHHHHHTCCEEECCCSSCCCSGGGTTCC
T ss_pred EEEEECchhHHHH-----------HHHHHHHc---CCCEEEecCchHHH-HHHHHHHCCCCEEECcccccccchhHHhhh
Confidence 9999976442111 22333333 34678999998764 69999999999999995 33333 45
Q ss_pred CccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 313 FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 313 ~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
..+++.+++.|+++++|||++... ...+...... .. ..+++++++++++|.|||+++|+++++|
T Consensus 288 ~~~~~~l~~~Gv~v~lgtD~~~~~-~~~l~~~~~~---~~------------~~gl~~~~al~~~T~n~A~~lg~~~~~G 351 (396)
T 3ooq_A 288 METIAKLLKDGVLIALMCDHPVIP-LEFATVQAAT---AM------------RYGAKEEDLLKILTVNPAKILGLEDRIG 351 (396)
T ss_dssp TTHHHHHHHTTCCEEECCTTTTSC-GGGHHHHHHH---GG------------GGTCCHHHHHHTTTHHHHHHTTCTTTSS
T ss_pred hHHHHHHHHCCCEEEEEcCCCccC-ccHHHHHHHH---HH------------HcCCCHHHHHHHHHHHHHHHhCCCCCee
Confidence 679999999999999999996432 1122222211 11 1259999999999999999999988899
Q ss_pred ccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCe
Q 012333 393 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 393 ~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
+|++|+.|||||+|.+++. . ..+|..||++|++||+..+
T Consensus 352 ~i~~G~~ADlvv~d~~~~~-----~----------~~~v~~v~~~G~~v~~~~~ 390 (396)
T 3ooq_A 352 SIEPGKDADLVVWSGHPFD-----M----------KSVVERVYIDGVEVFRREG 390 (396)
T ss_dssp SCCTTSBCCEEEESSCTTS-----T----------TCCEEEEEETTEEEEECC-
T ss_pred eECCCCcCCEEEECCCccc-----c----------ccceeEEEECCEEEeCCCC
Confidence 9999999999999999443 2 2589999999999999754
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=301.78 Aligned_cols=386 Identities=16% Similarity=0.163 Sum_probs=229.7
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
+++++|+|++|+++++ ..+++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|+......+
T Consensus 2 ~m~~li~n~~vv~~~~----~~~~~v~I~~g~I~~Ig~~~~~----~-~~~~viD~~g~~v~PGlID~H~H~~~~~~~~- 71 (559)
T 2fty_A 2 IYDLIIKNGIICTASD----IYAAEIAVNNGKVQLIAASIDP----S-LGSEVIDAEGAFITPGGIDAHVHVDEPLKLL- 71 (559)
T ss_dssp CEEEEEESCEEECSSC----EEECEEEEETTEEEEEESCCCG----G-GEEEEEECTTCEEEECEEECCBCCCCTTCTT-
T ss_pred CceEEEECcEEEcCCC----ceeeeEEEECCEEEEecCCCCC----C-CCCeEEeCCCCEEEcCEEeeccCcCcccccc-
Confidence 4689999999997543 2567999999999999975321 1 2457999999999999999999996432100
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHHHHHH----HHhCCe-EEee
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAV----ELLGLR-ACLV 167 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~~~~~----~~~g~~-~~~~ 167 (466)
. ...++.+ .....++++||||+++++... .....++. ...+.+ ....
T Consensus 72 ------------------~-~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 128 (559)
T 2fty_A 72 ------------------G-DVVDTME----HATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCD 128 (559)
T ss_dssp ------------------S-CCSCCHH----HHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSE
T ss_pred ------------------C-CCHHHHH----HHHHHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcceeE
Confidence 0 0111211 223557899999999986432 12134444 444443 1111
Q ss_pred cccccCCCCCCcccccCChHH---HH-HHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceec
Q 012333 168 QSTMDCGEGLPASWAVRTTDD---CI-QSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 243 (466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 243 (466)
..... . .. .+. ....+ .+ .+..++++++ +...+++++.++. ..++.+++.++++.|++++.++++|+
T Consensus 129 ~~~~~-~--~~-~~~-~~~~~~g~~l~~~~~~l~~~~---G~~~iki~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~ 199 (559)
T 2fty_A 129 YGLHL-I--LF-QIE-KPSVEARELLDVQLQAAYNDY---GVSSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHA 199 (559)
T ss_dssp EEEEE-E--CC-CCC-SSHHHHHHHHHHHHHHHHHHH---CCCEEEEESSSTT-TBCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEeee-e--ec-cCc-CCCchhhhhHHHHHHHHHHHC---CCCEEEEEecCCC-CcCCHHHHHHHHHHHHhCCCEEEEEC
Confidence 10100 0 00 010 01222 33 4444444332 3456777666665 57889999999999999999999999
Q ss_pred cCCcchhHHH--HhhcCCC--------Cch-------HHHHhhhccCCCCeeEEEeecCChh----hHHHHHhcCCeE--
Q 012333 244 AEIPYENQVV--MDTRKVD--------HGT-------VTFLDKIEFLQNNLLSAHTVWVNHT----EIGLLSRAGVKV-- 300 (466)
Q Consensus 244 ~~~~~~~~~~--~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~H~~~~~~~----~~~~~~~~g~~~-- 300 (466)
.+........ ....+.. ... ...+.....++.+ .|..|++.+ .++.+++.|+.+
T Consensus 200 e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i~la~~~g~~---vhi~H~s~~~~~~~i~~ak~~G~~Vt~ 276 (559)
T 2fty_A 200 ENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTP---ILFVHVSSPQAAEVIKQAQTKGLKVYA 276 (559)
T ss_dssp CCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCC---EEECSCCCHHHHHHHHHHHHTTCCEEE
T ss_pred CChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHHHHHHHhCCC---EEEEcCCCHHHHHHHHHHHHcCCceEE
Confidence 6532211110 0111110 000 0111122223333 455555433 344445577665
Q ss_pred EECccchhh-----------------------------------------cc---------CCccHHHHHHcCCcEEEcc
Q 012333 301 SHCPASAMR-----------------------------------------ML---------GFAPIKEMLHADICVSLGT 330 (466)
Q Consensus 301 ~~~p~~~~~-----------------------------------------~~---------~~~~~~~~~~~gi~~~~gs 330 (466)
.+||..... .. ...+++++++.|+++++||
T Consensus 277 e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igT 356 (559)
T 2fty_A 277 ETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGS 356 (559)
T ss_dssp EECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECC
T ss_pred eecCcccccCHHHhhccccccccccccccCccccccccccccCccccccCcEECCCCCCHHHHHHHHHHHhcCceEEEEe
Confidence 678872110 00 1123677899999999999
Q ss_pred CCCCCCCC-------------------CCHHH--------HHHHHHHHhcccccccCCCCCCCCC-CHHHHHHHHhHHHH
Q 012333 331 DGAPSNNR-------------------MSIVD--------EMYLASLINKGREVFANGTTDPAAL-PAETVLRMATINGA 382 (466)
Q Consensus 331 D~~~~~~~-------------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l-s~~~al~~~T~~~A 382 (466)
|+.+.+.. .+++. +++...+..+. .....+ +++++++++|.|||
T Consensus 357 D~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~l~~ll~~~--------v~~~~l~~~~~~~~~~t~~~A 428 (559)
T 2fty_A 357 DHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYG--------YLRGNLTSMMKLVEIQCTNPA 428 (559)
T ss_dssp CBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHT--------TTTTSSSCHHHHHHHHTHHHH
T ss_pred CCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHHHHHHHHHH--------HHcCCCCCHHHHHHHHhHHHH
Confidence 99876433 12221 23333222221 112348 99999999999999
Q ss_pred HHcCCCCcccccccC-CccCEEEEcCCC--------CCCCCcCCcccceecc-----cCCCCeeEEEEccEEEEECCeee
Q 012333 383 KSVLWDNDIGSLEAG-KKADMVVVDPFS--------WPMVPVHDRITSLVYC-----MRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 383 ~~lgl~~~~G~i~~G-~~ADlvv~d~~~--------~~~~~~~~~~~~~~~~-----~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
+++|+++++|+|++| ++|||||||.+. ....+.++..+...+. .-..+|..||++|++||++|+++
T Consensus 429 ~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~ 508 (559)
T 2fty_A 429 KVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEGEIL 508 (559)
T ss_dssp HHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGTSSCSCCTTTTCBCSCCEEEEEETTEEEEETTEEC
T ss_pred HHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEEEchHHhcccCCCCCccCCEecceEEEEEECCEEEEECCeec
Confidence 999997779999999 999999999984 1112222211111111 01357999999999999999987
Q ss_pred ecc-HHHHH
Q 012333 449 LLM-RGRLF 456 (466)
Q Consensus 449 ~~~-~~~~~ 456 (466)
+.. .|+++
T Consensus 509 ~~~~~G~~~ 517 (559)
T 2fty_A 509 KENADGKYL 517 (559)
T ss_dssp GGGCCCCBC
T ss_pred cCCcCCeee
Confidence 653 25554
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=296.45 Aligned_cols=380 Identities=17% Similarity=0.226 Sum_probs=226.5
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
|+++|+|++|++++ . ..+++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+.....
T Consensus 1 M~~~i~n~~v~~~~---~-~~~~~v~i~~g~I~~i~~~~~~------~~~~viD~~g~~v~PG~ID~H~H~~~~~~---- 66 (461)
T 3sfw_A 1 MKKWIRNGTVVTAS---D-TYQADVLIDGEKVVAIGSDLQA------TDAEVIDATGYYLLPGGIDPHTHLDMPFG---- 66 (461)
T ss_dssp CEEEEESCEEECSS---C-EEECEEEEETTEEEEEESCCCC------SSCEEEECTTCEEEECEEEEEECTTCEET----
T ss_pred CcEEEECeEEECCC---C-cEEEEEEEECCEEEEEeCCCCC------CCCeEEECCCCEEEeeeEEeEeccCcCCC----
Confidence 36899999999743 2 3567999999999999985421 46789999999999999999999954210
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHH-HHhCCeEEeecccccC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAV-ELLGLRACLVQSTMDC 173 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~-~~~g~~~~~~~~~~~~ 173 (466)
.....++ + ....+.++.+||||+++++.. ......+.. .....+.........
T Consensus 67 -----------------~~~~~e~-~---~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~- 124 (461)
T 3sfw_A 67 -----------------GTVTSDN-F---FTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFHL- 124 (461)
T ss_dssp -----------------TEECSCC-H---HHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEE-
T ss_pred -----------------CcccHhH-H---HHHHHHHHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcEEEEEEEE-
Confidence 0011111 1 122355789999999996532 222222222 211111111000000
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHH
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~ 253 (466)
+.. ......+.+..++.++ .+...++.++..++.+..+.+.+.++++.++++|.++.+|+.+........
T Consensus 125 --~~~-----~~~~~~~~~~~~l~~~---~G~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~ 194 (461)
T 3sfw_A 125 --MVS-----DANDHVLEELESVVNN---EGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALVQVHAENGDVLDYLT 194 (461)
T ss_dssp --ECS-----CCCHHHHHHHHHHHHT---SCCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH
T ss_pred --EEe-----CCCHHHHHHHHHHHHh---CCCCEEEEEEecCCCcccCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHH
Confidence 000 1122333333333321 445566666666555678899999999999999999999976533221111
Q ss_pred HhhcCCC----------Cc----h---HHHHhhhccCCCCeeEEEeecCCh----hhHHHHHhcCCeE--EECccchhh-
Q 012333 254 MDTRKVD----------HG----T---VTFLDKIEFLQNNLLSAHTVWVNH----TEIGLLSRAGVKV--SHCPASAMR- 309 (466)
Q Consensus 254 ~~~~~~~----------~~----~---~~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~g~~~--~~~p~~~~~- 309 (466)
......+ .. . ...+......+. -.|..|++. +.++.+++.|..+ .+||+....
T Consensus 195 ~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~---~~hi~H~s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~ 271 (461)
T 3sfw_A 195 KQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADA---QLYVVHVSCADAVRRIAEAREKGWNVYGETCPQYLVLD 271 (461)
T ss_dssp HHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTC---EEEECSCCSHHHHHHHHHHHHTTCEEEEEECHHHHHCC
T ss_pred HHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCC---CEEEEecCcHHHHHHHHHHHhcCCcEEEeeccceEEEc
Confidence 1100000 00 0 111222222233 346666665 6677788888776 578752210
Q ss_pred -------------ccCCcc---------HHHHHHcCCcEEEccCCCCCCCCC------CHH---------HHHHHHHHHh
Q 012333 310 -------------MLGFAP---------IKEMLHADICVSLGTDGAPSNNRM------SIV---------DEMYLASLIN 352 (466)
Q Consensus 310 -------------~~~~~~---------~~~~~~~gi~~~~gsD~~~~~~~~------~~~---------~~~~~~~~~~ 352 (466)
....+| ++++++.|+.++++||+.+..... ..+ .+........
T Consensus 272 ~~~~~~~~~~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~ 351 (461)
T 3sfw_A 272 ITALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFS 351 (461)
T ss_dssp GGGGGCTTTGGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHH
T ss_pred HHHhcCccccCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCCCchhhhhcccCCHhhCCCCCccHHHHHHHHHH
Confidence 011233 467888999999999998875110 001 0111111121
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCCcCCcccceecccC----
Q 012333 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVPVHDRITSLVYCMR---- 427 (466)
Q Consensus 353 ~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~~~~~~~~~~~~~~---- 427 (466)
+ ......+|++++++++|.+||+++|+++++|+|++|++|||||+|.+ ++.. +.++..+...+...
T Consensus 352 ~--------~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~~Ad~~~~d~~~~~~~-~~~~~~~~~~~sp~~g~~ 422 (461)
T 3sfw_A 352 E--------GVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTI-SVETHHMNVDYNPFEGMQ 422 (461)
T ss_dssp H--------TTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTSBCCEEEEEEEEEEEC-CTTTCCSSSSCCTTTTCE
T ss_pred H--------HHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCccCCCCcCCEEEEcCCCCEEE-chHHcccccCCCCCCCCE
Confidence 1 11233599999999999999999999878999999999999999988 2221 22221111111111
Q ss_pred -CCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 428 -TENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 428 -~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
..+|..||++|++||++|++++.. .|+++
T Consensus 423 ~~~~v~~t~v~G~~v~~~g~~~~~~~~G~~~ 453 (461)
T 3sfw_A 423 VHGDVISVLSRGAFVVRNKQFVGHAGAGRYV 453 (461)
T ss_dssp EEEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred ecceEEEEEECCEEEEECCeeccCCCCceEe
Confidence 148999999999999999988654 36554
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=302.16 Aligned_cols=380 Identities=15% Similarity=0.186 Sum_probs=226.1
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~ 99 (466)
+++|+|++|+++++ ..+++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|+.....
T Consensus 1 ~~li~n~~vv~~~~----~~~~~v~I~~g~I~~ig~~~~~----~-~~~~viD~~G~~v~PGlID~H~H~~~~~~----- 66 (458)
T 1gkp_A 1 PLLIKNGEIITADS----RYKADIYAEGETITRIGQNLEA----P-PGTEVIDATGKYVFPGFIDPHVHIYLPFM----- 66 (458)
T ss_dssp CEEEESCEEEETTE----EEECEEEESSSBCCEEESCCCC----C-TTCEEEECTTSEEEECEEEEEECSSCEET-----
T ss_pred CEEEEeeEEECCCC----ceEeeEEEECCEEEEecCCCCC----C-CCCeEEECCCCEEecCEEecccCCCcCCC-----
Confidence 37899999997542 2567999999999999975321 1 25689999999999999999999954210
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHH-hCCeEEeecccccCC
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVEL-LGLRACLVQSTMDCG 174 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~~~ 174 (466)
.....++.+. ..+.++++||||+++++.. ......+.... ...+...........
T Consensus 67 ----------------~~~~~~~~~~----~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
T 1gkp_A 67 ----------------ATFAKDTHET----GSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAV 126 (458)
T ss_dssp ----------------TEECSCCHHH----HHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEEC
T ss_pred ----------------CCcCHhHHHH----HHHHHHhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEee
Confidence 0011112111 2244678999999996532 22222222222 111111110010000
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
+ . ...+.+.+..+.+ +.+...++..+.++.....+++.+.++++.+++++.++++|+. .........
T Consensus 127 ---~-~----~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~e-~~~~~~~~~ 193 (458)
T 1gkp_A 127 ---S-K----FDEKTEGQLREIV----ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCE-NAELVGRLQ 193 (458)
T ss_dssp ---C-C----CCTTHHHHHHHHH----HTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHH
T ss_pred ---c-C----CchhhHHHHHHHH----HhCCCEEEEEeccCCCcCCCHHHHHHHHHHHHhcCCEEEEEcC-CHHHHHHHH
Confidence 0 0 1111233333333 2244556666666666778899999999999999999999994 333322211
Q ss_pred -hh--cCCC--------CchH-------HHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCeE--EECcc------ch
Q 012333 255 -DT--RKVD--------HGTV-------TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKV--SHCPA------SA 307 (466)
Q Consensus 255 -~~--~~~~--------~~~~-------~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~--~~~p~------~~ 307 (466)
.. .+.. .... ..+...+.++.+..+.|...- +.+.++.+++.|+.+ .+||. ++
T Consensus 194 ~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~ 273 (458)
T 1gkp_A 194 QKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTY 273 (458)
T ss_dssp HHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGG
T ss_pred HHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEecccceeeCHHH
Confidence 11 1110 0000 122222334444444443321 124577888899865 57876 33
Q ss_pred hhc--------cCCcc---------HHHHHHcCCcEEEccCCCCCCCC------CCHHH--------HHHHHHHHhcccc
Q 012333 308 MRM--------LGFAP---------IKEMLHADICVSLGTDGAPSNNR------MSIVD--------EMYLASLINKGRE 356 (466)
Q Consensus 308 ~~~--------~~~~~---------~~~~~~~gi~~~~gsD~~~~~~~------~~~~~--------~~~~~~~~~~~~~ 356 (466)
+.. ...+| ++.++++|+.+++|||+.+.+.. .+++. ++....++.+..
T Consensus 274 ~~~~~~~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~- 352 (458)
T 1gkp_A 274 AERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGV- 352 (458)
T ss_dssp GGSCHHHHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHT-
T ss_pred hcccccCCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCCHHHhhcccCChhhCCCCcccHHHHHHHHHHHHH-
Confidence 321 01133 34689999999999999775321 01111 222222222110
Q ss_pred cccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcC--------CcccceecccCC
Q 012333 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRT 428 (466)
Q Consensus 357 ~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~--------~~~~~~~~~~~~ 428 (466)
....+|++++++++|.|||++||+++++|+|++|++|||||||.+.....+.. +|+..+. ..
T Consensus 353 -------~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~p~~g~~---~~ 422 (458)
T 1gkp_A 353 -------SRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDYNGFEGFE---ID 422 (458)
T ss_dssp -------TSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEETTCCEECCGGGCCSSSSCCTTTTCE---ES
T ss_pred -------HcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCEEEEeCCCCeEEchHHcccccCCCccCCCE---Ee
Confidence 11249999999999999999999977799999999999999999853222211 2222211 13
Q ss_pred CCeeEEEEccEEEEECCeeeeccH-HHHHH
Q 012333 429 ENVVSVMCNGQWVMKNKKILLLMR-GRLFQ 457 (466)
Q Consensus 429 ~~v~~v~v~G~~v~~~g~~~~~~~-~~~~~ 457 (466)
.+|..||++|++||++|++++... |++++
T Consensus 423 ~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~ 452 (458)
T 1gkp_A 423 GRPSVVTVRGKVAVRDGQFVGEKGWGKLLR 452 (458)
T ss_dssp CEEEEEEETTEEEEETTEECCCTTCCCBCC
T ss_pred eEEEEEEECCEEEEECCeeccCCCCceecc
Confidence 579999999999999999987654 76653
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=296.45 Aligned_cols=367 Identities=17% Similarity=0.168 Sum_probs=217.4
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEE-CCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~-~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~ 94 (466)
.++++++|+|++|+++++ .....+++|+|+ ||+|++|++..+. + .+.++||++|++|+|||||+|+|+.....
T Consensus 12 ~~~~~~li~n~~vv~~~~-~~~~~~~~v~I~~~g~I~~Ig~~~~~----~-~~~~viD~~g~~v~PGlID~H~H~~~~~~ 85 (417)
T 2ogj_A 12 PLQAPILLTNVKPVGFGK-GASQSSTDILIGGDGKIAAVGSALQA----P-ADTQRIDAKGAFISPGWVDLHVHIWHGGT 85 (417)
T ss_dssp --CCCEEEEEEEECSSCT-TCCCSCEEEEECTTSBEEEEETTCCC----S-SCEEECCC--CEEEECEEEEEECCCBTTB
T ss_pred cCCCcEEEECCEEEcCCC-CccCccceEEEecCCEEEEeccCCCC----C-CCCeEEECCCCEEccCeeecccccccccc
Confidence 344689999999997543 113467899999 9999999874321 1 24579999999999999999999954321
Q ss_pred ccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc---CHHHHHHHHHH-h--CCeEEeec
Q 012333 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVEL-L--GLRACLVQ 168 (466)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~---~~~~~~~~~~~-~--g~~~~~~~ 168 (466)
.. ..+.. ..++++||||+++++.. ....+.+...+ . +++.+...
T Consensus 86 ~~--------------------~~~~~----------~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 135 (417)
T 2ogj_A 86 DI--------------------SIRPS----------ECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNL 135 (417)
T ss_dssp SS--------------------CCCGG----------GTSGGGTEEEEEEESSCCSTTHHHHHHHTTTTCSSEEEEEEES
T ss_pred cc--------------------CCCHH----------HHHHhCCcCeEEeCCcCCCcCHHHHHHHHhhccccCeEEEecc
Confidence 10 00111 13689999999997633 22222221111 1 12333222
Q ss_pred ccccCCCCCCc-----ccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceec
Q 012333 169 STMDCGEGLPA-----SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 243 (466)
Q Consensus 169 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 243 (466)
.. . |... .... ......+...+.++++.. ....++.+.........+.+.+.++++++++.+.++.+|+
T Consensus 136 ~~--~--G~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~-~~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 209 (417)
T 2ogj_A 136 GS--I--GLVACNRVPELRD-IKDIDLDRILECYAENSE-HIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHV 209 (417)
T ss_dssp ST--T--TTTTTTTSCSCSS-GGGCCHHHHHHHHHTCTT-TEEEEEEEESHHHHTTCTTHHHHHHHHHHHHHTCCEEEEE
T ss_pred cc--C--cCCCCCCcccccc-hhhcCHHHHHHHHHhCCC-ceEEEEEEecCCccccccHHHHHHHHHHHHHcCCcEEEEc
Confidence 11 1 1111 1100 000011223333333221 1112444444333445677888899999999999999999
Q ss_pred cCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-----------hhHHHHHhcCCeEEECccchhhccC
Q 012333 244 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLG 312 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-----------~~~~~~~~~g~~~~~~p~~~~~~~~ 312 (466)
.+....... .... +.....+.|+.+..+ +++.++++.|+.+.++|.... ..
T Consensus 210 ~~~~~~~~~-------------~~~~---l~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v~~~~~~~~--~~ 271 (417)
T 2ogj_A 210 GEPPALYDE-------------VLEI---LGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGAS--FS 271 (417)
T ss_dssp CSSSSCHHH-------------HHHH---CCTTCEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEEECCBCSSS--CC
T ss_pred CCCcccHHH-------------HHHH---hcCCCEEEeccCCCccchhccCHHHHHHHHHHHhcCcEEEecCCCcc--cc
Confidence 754321111 1111 122356777665332 567777888988877775321 23
Q ss_pred CccHHHHHHcC-CcEEEccCCCCCC-C---CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 313 FAPIKEMLHAD-ICVSLGTDGAPSN-N---RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 313 ~~~~~~~~~~g-i~~~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
..+++.+++.| ++++++||++ .+ . ...+...+... .. .++|++++++++|.|||+++|+
T Consensus 272 ~~~~~~~~~~G~~~~~lgtD~~-~~~~~g~~~~l~~~~~~~--~~-------------~~l~~~~al~~~T~n~A~~lgl 335 (417)
T 2ogj_A 272 FKVAEAAIARGLLPFSISTDLH-GHSMNFPVWDLATTMSKL--LS-------------VDMPFENVVEAVTRNPASVIRL 335 (417)
T ss_dssp HHHHHHHHHTTCCCSBCCBCBS-TTTTTTTCCCHHHHHHHH--HH-------------TTCCHHHHHHTTTHHHHHHTTC
T ss_pred chHHHHHHHcCCCceEEEcCCC-CCccCCChhHHHHHHHHH--HH-------------cCCCHHHHHHHHHHHHHHHhCC
Confidence 46789999999 9999999986 43 1 11222222211 11 1499999999999999999999
Q ss_pred CCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHH
Q 012333 388 DNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 462 (466)
Q Consensus 388 ~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 462 (466)
++ +|+|++|++|||||+|.+... .+..++....++.....+|..||++|++||+++++...+ +++++..+.
T Consensus 336 ~~-~G~l~~G~~ADlvv~d~~~~~-~~~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~~~~~--~~~~~~~~~ 406 (417)
T 2ogj_A 336 DM-ENRLDVGQRADFTVFDLVDAD-LEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPRAR--KLVRHSHGY 406 (417)
T ss_dssp CC-SSTTSTTSBCEEEEEEEEEEE-EEEECTTSCEEEEEEEEEEEEEEETTEEEECCCCCCCC------------
T ss_pred CC-CCccCCCCcccEEEEecccCC-ceecCCCCceEecccccceEEEEECCEEEEeCCccchHH--HHHHHhhcc
Confidence 76 899999999999999987221 122333333333333458999999999999999998766 666665543
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=292.83 Aligned_cols=345 Identities=16% Similarity=0.176 Sum_probs=225.1
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc---
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG--- 96 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~--- 96 (466)
+++|+|++|+|+++... ...+|+|+||||++||+..+.......+++++||++|++|+|||||+|+|+.......
T Consensus 37 ~~li~ng~I~t~~~~~~--~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~ 114 (534)
T 3icj_A 37 MKALINGTIYTSFSPVK--KVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMV 114 (534)
T ss_dssp EEEEESSEEEEEETTEE--EESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSE
T ss_pred CEEEECCEEECCCCCCc--eeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCcc
Confidence 47999999999876432 3459999999999999865542211013678999999999999999999975422110
Q ss_pred -ccCCCCchH-----------hhhhccccccC------------------------------------------------
Q 012333 97 -IADDVDLMT-----------WLHDRIWPYES------------------------------------------------ 116 (466)
Q Consensus 97 -~~~~~~~~~-----------~~~~~~~~~~~------------------------------------------------ 116 (466)
.....+..+ |+.+..|....
T Consensus 115 dl~~~~s~~e~~~~l~~~~~~wi~g~G~~~~~~~~~pt~~~LD~~~~Pv~l~~~~~H~~~~Ns~AL~~~gi~~t~~p~G~ 194 (534)
T 3icj_A 115 DLRGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDES 194 (534)
T ss_dssp ECTTCCSHHHHHHHHHTCCSSSEEEEEECHHHHSSCCCHHHHTTSSSCEEEEETTSSEEEECHHHHHHHCCCCCTTEETT
T ss_pred CCCCCCCHHHHHHHHHHHHhhCEEEcccCHHHhcCCCCHHHHhhCCCeEEEEecCCcHhHHhHHHHHHcCCCCCCCCCCC
Confidence 000001000 33333332110
Q ss_pred -----------------C-C-ChhHHHHHHHHHHHHHHhcCceeeeecCccC-HHHHHHHHHH---hCCeEEeecccccC
Q 012333 117 -----------------N-M-TEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMAKAVEL---LGLRACLVQSTMDC 173 (466)
Q Consensus 117 -----------------~-~-~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-~~~~~~~~~~---~g~~~~~~~~~~~~ 173 (466)
. . +.++.........+.+.+.|+|++.+++... .....+.... ..+|.......
T Consensus 195 tG~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~~~~~~~~~~~l~~~g~l~~rv~~~~~~--- 271 (534)
T 3icj_A 195 TGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVGEKALKALFELEREGRLKMNVFAYLSP--- 271 (534)
T ss_dssp TTEEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEECHHHHHHHHHHHHTTCCCSEEEEEECG---
T ss_pred CceeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhCCCCcEEEEEecCH---
Confidence 0 1 2222233334466778999999999986331 1112222222 23444321100
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeE-----EEEe-------------------ecccccCCHHHHHHHH
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR-----IWFG-------------------IRQIMNATDRLLLETR 229 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~-------------------~~~~~~~~~~~l~~~~ 229 (466)
...+...+.. ....+...++ ++.. ..+....+++++.+++
T Consensus 272 --------------~~~~~~~~~~--~~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v 335 (534)
T 3icj_A 272 --------------ELLDKLEELN--LGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVI 335 (534)
T ss_dssp --------------GGHHHHHHHT--CCSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHH
T ss_pred --------------HHHHHHHHhc--cccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHH
Confidence 0111111110 0011122222 2110 1123346899999999
Q ss_pred HHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchh-
Q 012333 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM- 308 (466)
Q Consensus 230 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~- 308 (466)
+.|++.|+++++|+.+...... .++.+.... .+..++|+.++++++++++++.|+.+++||.+..
T Consensus 336 ~~A~~~G~~v~~Ha~gd~ai~~-----------~l~a~~~~~---~r~~ieH~~~~~~e~i~~la~~gv~~~~~P~~~~~ 401 (534)
T 3icj_A 336 ERAKPLGLDVAVHAIGDKAVDV-----------ALDAFEEAE---FSGRIEHASLVRDDQLERIKELKVRISAQPHFIVS 401 (534)
T ss_dssp HHHTTTTCEEEEEECSHHHHHH-----------HHHHHHHHT---CCCEEEECCBCCHHHHHHHHHHTCEEEECTTHHHH
T ss_pred HHHHHCCCEEEEEEcChHHHHH-----------HHHHHHhcc---CCCEEEECCCCCHHHHHHHHHcCCeEEEccccccc
Confidence 9999999999999975332211 122222222 6788999999999999999999999999998753
Q ss_pred -----------hccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 012333 309 -----------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377 (466)
Q Consensus 309 -----------~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 377 (466)
+..+.+|++.+++. +++++|||++.. ..+++..++.+... ..+..++++|++++|+++
T Consensus 402 ~~~~~~~lg~~r~~~~~p~~~l~~~-v~valGSD~p~~--~~~p~~~~~~av~r--------~~~~~~~~ls~~eaL~~~ 470 (534)
T 3icj_A 402 DWWIVNRVGEERAKWAYRLKTLSSI-TKLGFSTDSPIE--PADPWVSIDAAVNR--------YVVDPGERVSREEALHLY 470 (534)
T ss_dssp CTTHHHHHHHHHGGGBTCHHHHHHH-SCEEECCTTTTS--CCCHHHHHHHHHHC--------CSSCGGGCCCHHHHHHHT
T ss_pred hhHHHHhhCHHHHhccHHHHHHHHh-CCEEeecCCCCC--CCCHHHHHHHHHhc--------cccCcccCCCHHHHHHHH
Confidence 22467899999999 999999999754 36899998877543 112344679999999999
Q ss_pred hHHHHHHcCCCCcccccccCCccCEEEEcCCCCC
Q 012333 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 411 (466)
Q Consensus 378 T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~ 411 (466)
|.++|+++|++ ++|+|++||.|||||+|.|+++
T Consensus 471 T~~~A~~lg~e-~~GsLe~Gk~ADlvvld~dpl~ 503 (534)
T 3icj_A 471 THGSAQVTLAE-DLGKLERGFRAEYIILDRDPLK 503 (534)
T ss_dssp THHHHHHTTCT-TCSCCSTTSBCCEEEESSCTTC
T ss_pred HHHHHHHhCCC-CCeEECCCCCcCEEEECCChhh
Confidence 99999999998 8999999999999999999443
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=286.36 Aligned_cols=354 Identities=16% Similarity=0.119 Sum_probs=221.8
Q ss_pred cceEEEEccEE-EeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCC-CeEEeCCCcEEeecccccccCCcccccc
Q 012333 18 SSTMILHNAVI-VTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMA-DQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 18 ~~~~lI~n~~i-~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~-~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
|.+++|+|++| +++++...++.+++|+|+||+|++|++..... + .+ .++||++|++|+|||||+|+|+...
T Consensus 1 m~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~---~-~~~~~viD~~g~~v~PGlID~H~H~~~~--- 73 (386)
T 2vun_A 1 MSKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMK---D-AGDATIIDAAGSTVTPGLLDTHVHVSGG--- 73 (386)
T ss_dssp -CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGT---T-CTTCEEEECTTCEEEECEEEEEECCCST---
T ss_pred CccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccC---C-CCCceEEcCCCCEEccceeeccccccCC---
Confidence 46899999999 97654323467889999999999998742211 1 24 6899999999999999999999420
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-----ccC--HHHHH--HHHHH---hCCe
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-----GQH--VSEMA--KAVEL---LGLR 163 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-----~~~--~~~~~--~~~~~---~g~~ 163 (466)
+|. + +.........++++||||+++++ +.. ...+. +.... .+.+
T Consensus 74 ---------~~~------------~---~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (386)
T 2vun_A 74 ---------DYA------------P---RQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNAR 129 (386)
T ss_dssp ---------TEE------------G---GGTEESHHHHHHTTTEEEEEECCCTTSTTCCCSHHHHHHHHHHHHHHHHHCC
T ss_pred ---------CcC------------h---hHHHHHHHHHHHhCCceEEEeccccccCCChhhHHHHHHHHHHhhccccccc
Confidence 111 0 00001134668999999999965 211 21121 21111 1111
Q ss_pred EEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceec
Q 012333 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 243 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 243 (466)
. ....+. . +.+ .... ... .. .++++.+.+...++.+.. . ...+++.+.++++.++++|+++.+|+
T Consensus 130 ~-~~~~~~-~--g~~-~~~~-~~~--~~----~~~~~~~~g~~~ik~~~~-~--~~~~~~~l~~~~~~a~~~g~~v~~H~ 194 (386)
T 2vun_A 130 P-AGVKVH-G--GAV-ILEK-GLT--EE----DFIEMKKEGVWIVGEVGL-G--TIKNPEDAAPMVEWAHKHGFKVQMHT 194 (386)
T ss_dssp G-GGCEEE-C--CEE-CCCT-TCC--HH----HHHHHHHTTCCEEEEETS-S--SCCSHHHHHHHHHHHHHTTCEEEEEC
T ss_pred c-cceeec-c--Ccc-cccC-CcC--HH----HHHHHHHhCCCeEEEeec-C--CCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 0 000000 0 100 0000 001 12 222222334455555321 1 12578899999999999999999999
Q ss_pred cCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeec----CChhhHHHHHhcCCeEEECccchhhccCCccHHHH
Q 012333 244 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW----VNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEM 319 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~----~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~ 319 (466)
.+...... ...........+ .+ .+.|+.+ ++++.++++++.|+.+..++..........+++.+
T Consensus 195 ~~~~~~~~--------~~~~i~~~~~~G---~~-~i~H~~~~~~~~~~~~~~~~~~~g~~vl~~~~~g~~~~~~~~~~~~ 262 (386)
T 2vun_A 195 GGTSIPGS--------STVTADDVIKTK---PD-VVSHINGGPTAISVQEVDRIMDETDFAMEIVQCGNPKIADYVARRA 262 (386)
T ss_dssp SCCSCSTT--------CSCCHHHHHHHC---CS-EEETTTCSSSCCCHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCcccccc--------CHHHHHHHHHcC---CC-EEEEccCCCCCCCHHHHHHHHHcCCeEEEeccCCcccccHHHHHHH
Confidence 74321000 001111111222 22 4889888 88999999999998873332211012334678899
Q ss_pred HHcCC--cEEEccCCC-CC--CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 320 LHADI--CVSLGTDGA-PS--NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 320 ~~~gi--~~~~gsD~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
++.|+ +++++||++ +. ++...+..+++.. .. .++|++++++++|.|||+++|+ ++|+|
T Consensus 263 ~~~g~~d~v~lgTD~p~~~~~~~~g~~~~~~~~~--~~-------------~~ls~~~~~~~~T~n~A~~lgl--~~G~i 325 (386)
T 2vun_A 263 AEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQIA--SM-------------SDIDPEVAVCMATGNSTAVYGL--NTGVI 325 (386)
T ss_dssp HHHTCGGGEEEECCBSBTTBBCTTHHHHHHHHHH--HH-------------SCCCHHHHHHHHTHHHHHHHTC--SCSSC
T ss_pred HHcCCCceeEEecCCCCCCCCCcchhHHHHHHHH--hh-------------cCCCHHHHHHHHhHHHHHHcCC--Cceee
Confidence 99999 999999994 21 1111233333322 11 2499999999999999999999 48999
Q ss_pred ccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeee
Q 012333 395 EAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449 (466)
Q Consensus 395 ~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 449 (466)
++|++|||||+|.+.. .|..+++..+.+ ....+|..||++|++|+++|+...
T Consensus 326 ~~G~~ADlvv~d~~~~--~~~~~~~~~~~~-~~~~~v~~v~v~G~~v~~~~~~~~ 377 (386)
T 2vun_A 326 APGKEADLIIMDTPLG--SVAEDAMGAIAA-GDIPGISVVLIDGEAVVTKSRNTP 377 (386)
T ss_dssp STTSBCCEEEEECBTT--CSCSSHHHHHHH-TCCCEEEEEEETTEEEESSCSSSC
T ss_pred CCCCeeCEEEECCCcc--cccchhHHHhhc-cCCCceeEEEECCEEEeecCcCCC
Confidence 9999999999999864 355566666554 345689999999999999998765
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=296.62 Aligned_cols=369 Identities=17% Similarity=0.194 Sum_probs=217.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcC-CchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ-SADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~-~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
|++++|+|++|++++ . +.+++|+|+||+|++|++ ..... .+..+.++||++|++|+|||||+|+|+....
T Consensus 3 ~m~~li~~~~v~~~~---~-~~~~~v~i~~g~I~~i~~~~~~~~--~~~~~~~viD~~g~~v~PGlID~H~H~~~~~--- 73 (452)
T 2gwn_A 3 AMKILLRNALITNEG---K-TFPGSVMIDGAFISRIIEGELPAD--DNLSADEVIECSGLRLFPGCIDDQVHFREPG--- 73 (452)
T ss_dssp CSEEEEEEEEEEETT---E-EEEEEEEEETTEEEEEEESCCCTT--CCTTCSEEEECTTCEEEECEEEEEECCCTTT---
T ss_pred cccEEEECeEEECCC---c-eeeeeEEEECCEEEEEecCCCccc--cCCCCCeEEeCCCCEEecCEEeeccccCCCC---
Confidence 568999999999743 2 467899999999999986 43210 0013568999999999999999999995310
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC-----HHHH---HHHHHHhC-CeEEee
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEM---AKAVELLG-LRACLV 167 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-----~~~~---~~~~~~~g-~~~~~~ 167 (466)
....++.+ ...+.++++||||+++++... ...+ .+.....+ +.....
T Consensus 74 --------------------~~~~e~~~----~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
T 2gwn_A 74 --------------------LTHKATIA----SESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFF 129 (452)
T ss_dssp --------------------CTTTCCHH----HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEC
T ss_pred --------------------CCcHHHHH----HHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCcccEEEE
Confidence 01111111 122456799999999986321 1111 11111111 111000
Q ss_pred cc-----------cccCC-CCC------Cc-ccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeec-------------
Q 012333 168 QS-----------TMDCG-EGL------PA-SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIR------------- 215 (466)
Q Consensus 168 ~~-----------~~~~~-~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------- 215 (466)
.. ....+ .|+ .. .+.. ... ....+.+++. ...+.......
T Consensus 130 ~~~~~~~~~~i~~~~~~g~~g~k~~~~~~~~~~~~-~~~---~~~~~~~~~~----~~~~~~h~~~~~~~~~~~~~~~~~ 201 (452)
T 2gwn_A 130 FGGTNDNIDEIKRVDKHLVPGLKLFLGSSTGNMLV-DNK---ETLEKIFGEC----DLLIATHCEKEEIIRANKEHYKAK 201 (452)
T ss_dssp EECCSSCHHHHHTCCTTSCSCEEEESSSCCGGGBC-CCH---HHHHHHHHHC----CSCEEEECCCHHHHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHcCCCEEEEEeccCCCCccc-CCH---HHHHHHHHHc----CCEEEEcCCCHHHHHhHHhhhhhh
Confidence 00 00000 010 00 0000 111 1222333332 11221111000
Q ss_pred -------------ccccCCHHHHHHHHHHHHHcCCccce-eccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCe---e
Q 012333 216 -------------QIMNATDRLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL---L 278 (466)
Q Consensus 216 -------------~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 278 (466)
.+.....+.+.+++++++++++++++ |+.. ........... .++. ... +
T Consensus 202 ~G~~~~~~~h~~~~~~~~~~~~l~~~~~la~~~g~~v~i~H~~~-~~~~~~~~~~~-----------a~~~--~~v~~~~ 267 (452)
T 2gwn_A 202 YGNDLDIHFHPLIRSEEACYRSSAEAVELAERMNARLHILHLST-EKELSLFRNDI-----------PTAQ--KRITSEV 267 (452)
T ss_dssp HCSCCCGGGHHHHSCHHHHHHHHHHHHHHHHHHTCCEEECCCCC-TGGGGGSCCSS-----------CGGG--CSEEEEE
T ss_pred cCcccchhhccccCChHHHHHHHHHHHHHHHHhCCCEEEEeCCC-HHHHHHHHHhh-----------cccC--CCeEEEE
Confidence 01122356788899999999999999 8873 22111110000 0010 012 3
Q ss_pred EEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCC---CCHHH--------HHH
Q 012333 279 SAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR---MSIVD--------EMY 346 (466)
Q Consensus 279 ~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~---~~~~~--------~~~ 346 (466)
..|+.++++++++. .|..+.++|. ++. .+..++++++++|+++++|||+.+.+.. .+++. +++
T Consensus 268 ~~h~~~l~~~~~~~---~g~~~~~~P~--lr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~k~~~~~~~~~g~~~~e~~ 342 (452)
T 2gwn_A 268 CVHHLWFSDTDYGR---LGNRIKWNPA--IKKESDREALRAAVRNGRIDIIATDHAPHLLREKEGSCLQAASGGPLVQHS 342 (452)
T ss_dssp EHHHHHCCGGGHHH---HGGGGCCSSC--CCCHHHHHHHHHHHHHSSSCEEECCBCCCCHHHHCSCTTTSCCCCCCTTTH
T ss_pred chHHhhcCHHHHhc---cCceEEECCC--CCCHHHHHHHHHHHHCCCceEEEeCCCCCChHHhcCChhhCCCCCccHHHH
Confidence 34899999988876 6777788887 333 3456889999999999999999765421 22332 222
Q ss_pred HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceeccc
Q 012333 347 LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCM 426 (466)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~ 426 (466)
......... ..++|++++++++|.|||+++|++ ++|+|++|++|||||+|.+.....+.++..+...+..
T Consensus 343 ~~~~~~~~~---------~~~ls~~~~l~~~T~~~A~~lgl~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~ 412 (452)
T 2gwn_A 343 LLALLELCN---------QGIFSIEEIVSKTAHIPATLFAIE-KRGYIRPGYYADLVLVDPSSPHTVSADNILSLCGWSP 412 (452)
T ss_dssp HHHHHHHHH---------TTSSCHHHHHHHHTHHHHHHHTBT-TCSSCCTTSBCCEEEEETTSCEECCTTTCCSTTCCCT
T ss_pred HHHHHHHHH---------cCCCCHHHHHHHHhHhHHHHcCCC-CCCcccCCCcCCEEEEcCCCCeEECHHHccccCCCCC
Confidence 222121100 125999999999999999999996 6899999999999999998433333334333333322
Q ss_pred C-----CCCeeEEEEccEEEEECCeeeec-cHHHHH
Q 012333 427 R-----TENVVSVMCNGQWVMKNKKILLL-MRGRLF 456 (466)
Q Consensus 427 ~-----~~~v~~v~v~G~~v~~~g~~~~~-~~~~~~ 456 (466)
. ..+|..||++|++||++|+++.. ..|+++
T Consensus 413 ~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 448 (452)
T 2gwn_A 413 FEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPL 448 (452)
T ss_dssp TTTCEESCEEEEEEETTEEEEETTEECSSCCCCCBC
T ss_pred CCCcEEeeeEEEEEECCEEEEECCeeccCCCCceee
Confidence 2 46899999999999999998754 445544
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=297.94 Aligned_cols=379 Identities=15% Similarity=0.152 Sum_probs=210.7
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
+|++|+|++|+++++ ..+++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+.......
T Consensus 1 ~~~li~n~~v~~~~~----~~~~~v~I~~g~I~~ig~~~~-------~~~~viD~~G~~v~PGlID~H~H~~~~~~~~-- 67 (457)
T 1nfg_A 1 MDIIIKNGTIVTADG----ISRADLGIKDGKITQIGGALG-------PAERTIDAAGRYVFPGGIDVHTHVETVSFNT-- 67 (457)
T ss_dssp CCEEEEEEEEEETTE----EEEEEEEEETTEEEEESSCCC-------CCSEEEECTTCEEEECEEEEEECCSCEETTE--
T ss_pred CcEEEEeeEEEeCCC----ceeeeEEEECCEEEEecCCCC-------CCCeEEeCCCCEEccceEeeccccccCcCCC--
Confidence 378999999997542 257799999999999987421 2568999999999999999999995321100
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHHh-CCeEEeecccccC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELL-GLRACLVQSTMDC 173 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~-g~~~~~~~~~~~~ 173 (466)
+..++.+ ...+.++.+||||+++++.. ......+..... .-...........
T Consensus 68 -------------------~~~e~~~----~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (457)
T 1nfg_A 68 -------------------QSADTFA----TATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHII 124 (457)
T ss_dssp -------------------ECSCCHH----HHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred -------------------CChhhHH----HHHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCccCEEEEEe
Confidence 0111211 12345789999999997532 122222222111 1011000011101
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHH
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~ 253 (466)
... ...+. .+.++++.+.+...++.+.........+.+.+.++++.+++.+.++.+|+..........
T Consensus 125 ~~~--------~~~~~----~~~~~~~~~~G~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~ 192 (457)
T 1nfg_A 125 VLD--------PTDSV----IEELEVLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLR 192 (457)
T ss_dssp CSS--------CCHHH----HHHTTTGGGGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHH
T ss_pred ecC--------CchhH----HHHHHHHHHcCCCEEEEeeccCCCCCCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 100 01111 122333334444445554433221335677888888999999999999985422211111
Q ss_pred Hh--hcCCCCch---------------HHHHhhhccCCCCeeEEEeecCChhhH---HHHHhcCCeEE--ECccch----
Q 012333 254 MD--TRKVDHGT---------------VTFLDKIEFLQNNLLSAHTVWVNHTEI---GLLSRAGVKVS--HCPASA---- 307 (466)
Q Consensus 254 ~~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~H~~~~~~~~~---~~~~~~g~~~~--~~p~~~---- 307 (466)
.. ..+..... .+.+......+.+..+.|.. +.+.+ +.+++.|..+. ++|...
T Consensus 193 ~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~H~~--~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~~ 270 (457)
T 1nfg_A 193 DKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVT--CEESLEEVMRAKSRGVRALAETCTHYLYLTK 270 (457)
T ss_dssp HHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCCC--SHHHHHHHHHHHHHTCCEEECEEGGGGTCCG
T ss_pred HHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCC--cHHHHHHHHHHHHcCCeEEEEEchHHhEeCH
Confidence 10 11110000 00111111112222223332 23323 33334554332 222210
Q ss_pred --hh----------------c-cCCccHHHHHHcCCcEEEccCCCCCCCC-------CCHHH--------HHHHHHHHhc
Q 012333 308 --MR----------------M-LGFAPIKEMLHADICVSLGTDGAPSNNR-------MSIVD--------EMYLASLINK 353 (466)
Q Consensus 308 --~~----------------~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~-------~~~~~--------~~~~~~~~~~ 353 (466)
+. . ....+++.+++.|+.+++|||+.+.+.. .+++. +++....+..
T Consensus 271 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~~~ 350 (457)
T 1nfg_A 271 EDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQG 350 (457)
T ss_dssp GGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHH
T ss_pred HHhccccccCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCCChHHhhhcccCCHhHCCCCcccHHHHHHHHHHH
Confidence 00 0 1123567789999999999998765422 12221 2222211110
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccC-----C
Q 012333 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR-----T 428 (466)
Q Consensus 354 ~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~-----~ 428 (466)
.. ..++|++++++++|.|||++||+++++|+|++|++|||||+|.+.....+..++.+...+... .
T Consensus 351 ~~---------~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~g~~~~ 421 (457)
T 1nfg_A 351 VN---------EGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHKVK 421 (457)
T ss_dssp HH---------TTSSCHHHHHHHHTHHHHHHTTCTTTSSSCSTTSBCCEEEEEEEEEEECCGGGSCSSCSCCTTTTCEEE
T ss_pred HH---------cCCCCHHHHHHHHhhhHHHHhCCCCCCcCcCCCCccCEEEEeCCCCEEecHHHccCCCCCCCccCCEec
Confidence 00 124999999999999999999998779999999999999999984322232333222222211 2
Q ss_pred CCeeEEEEccEEEEECCeeeeccH-HHHH
Q 012333 429 ENVVSVMCNGQWVMKNKKILLLMR-GRLF 456 (466)
Q Consensus 429 ~~v~~v~v~G~~v~~~g~~~~~~~-~~~~ 456 (466)
.+|..||++|++||++|+++.... |+++
T Consensus 422 ~~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 450 (457)
T 1nfg_A 422 GVPKTVLLRGKVIVDEGSYVGEPTDGKFL 450 (457)
T ss_dssp EEEEEEEETTEEEEETTEECCCTTSCCBC
T ss_pred ceEEEEEECCEEEEECCccccCCCCCeee
Confidence 479999999999999999987655 6654
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=282.39 Aligned_cols=342 Identities=16% Similarity=0.127 Sum_probs=211.8
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++++ . .+.+++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|+....
T Consensus 2 ~li~~~~v~~~~--~-~~~~~~v~I~~g~I~~vg~~~~~----~-~~~~viD~~g~~v~PGlID~H~H~~~g~------- 66 (382)
T 1yrr_A 2 YALTQGRIFTGH--E-FLDDHAVVIADGLIKSVCPVAEL----P-PEIEQRSLNGAILSPGFIDVQLNGCGGV------- 66 (382)
T ss_dssp EEEESSEEECSS--C-EESSEEEEEETTEEEEEEEGGGS----C-TTCCEEECTTCEEEECEEEEEESEETTE-------
T ss_pred EEEEeeEEEcCC--c-eeeCCEEEEECCEEEEEecCCCC----C-ccceeecCCCCEEccCEEEEeecccCCc-------
Confidence 689999999754 2 66788999999999999875321 1 2557999999999999999999985310
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-CHH-------HHHHHHHHhCCeEEeeccccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVS-------EMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~~~-------~~~~~~~~~g~~~~~~~~~~~ 172 (466)
++.+| ....+++..+ .....++++||||+++++.. ... .+.++....|.+.... ..
T Consensus 67 -~~~~~--------~~~~~~~~~~----~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~---~~ 130 (382)
T 1yrr_A 67 -QFNDT--------AEAVSVETLE----IMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQALGL---HL 130 (382)
T ss_dssp -ESSSS--------TTTSSHHHHH----HHHHHHHHTTEEEEEEEEECCCHHHHHHHHHHHHHHHHHCTTSBCCE---EE
T ss_pred -Ccccc--------ccCCCHHHHH----HHHHHHHhCCeEEEEeecCCCCHHHHHHHHHHHHHHhhccCCceeEE---EE
Confidence 01111 1112332221 24577899999999996532 221 2222323235553211 11
Q ss_pred CCCCCCcccc----cCChHHHHHHHHHHHHHhccCCCCCeEEEE-eecccccCCHHHHHHHHHHHHHcCCccce-eccCC
Q 012333 173 CGEGLPASWA----VRTTDDCIQSQKELYAKHHHAADGRIRIWF-GIRQIMNATDRLLLETRDMAREFKTGIHM-HVAEI 246 (466)
Q Consensus 173 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~~~ 246 (466)
.++...+... ....... ..+.++ +.+.+.+.++.+. .++ +.+.++++.++++|+++++ |+.+.
T Consensus 131 ~g~~~~~~~~g~~~~~~~~~~---~~~~~~-~~~~~~~~ik~~~~~~~-------~~~~~~~~~a~~~g~~v~~gH~~~~ 199 (382)
T 1yrr_A 131 EGPWLNLVKKGTHNPNFVRKP---DAALVD-FLCENADVITKVTLAPE-------MVPAEVISKLANAGIVVSAGHSNAT 199 (382)
T ss_dssp ECSSCCCSCC-CCCSCSCCHH---HHHHHH-HHHHTTTTEEEEEECGG-------GSCHHHHHHHHHTTCEEEECSCCCC
T ss_pred eCCcCCccccCCCCHHHccCC---CHHHHH-HHHhcCCCEEEEEECCC-------CChHHHHHHHHHCCCEEEEECCCCC
Confidence 1111111100 0000111 122233 3233445666532 111 3445778899999999998 99866
Q ss_pred cchhHHHHhhcCCCCchHHHHh-hhc--------cC-----CCCe---eEEEeecCChhhHHHHHhcC-CeEEECccchh
Q 012333 247 PYENQVVMDTRKVDHGTVTFLD-KIE--------FL-----QNNL---LSAHTVWVNHTEIGLLSRAG-VKVSHCPASAM 308 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~-----~~~~---~~~H~~~~~~~~~~~~~~~g-~~~~~~p~~~~ 308 (466)
..+....... +. ...+.+. ... .+ ..+. .+.|+.+++++.++.+++.+ ..+.+++....
T Consensus 200 ~~~~~~~~~~-G~--~~~~h~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 276 (382)
T 1yrr_A 200 LKEAKAGFRA-GI--TFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA 276 (382)
T ss_dssp HHHHHHHHHH-TC--CEESSTTTTSCCBCSSCCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHHHHHGGGEEEECCBCT
T ss_pred HHHHHHHHHc-CC--CeeEECCCCCCccccCCcchhhHhhcCCcceeeecCcccccCHHHHHHHHHcCCCcEEEECcChH
Confidence 5443333221 11 0111000 000 00 0112 68899999999999998877 55555554322
Q ss_pred hcc---CCc---cHHHHHHcCCcE-EEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 012333 309 RML---GFA---PIKEMLHADICV-SLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381 (466)
Q Consensus 309 ~~~---~~~---~~~~~~~~gi~~-~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~ 381 (466)
... ..+ .++.+++.|+++ +.|||.. +..+++.+++.+.... ++|+.++++++|.||
T Consensus 277 ~~g~~~~~~~~~~~~~~~~~Gv~~~~~Gt~~g---~~~~~~~~~~~~~~~~--------------g~~~~~al~~aT~~~ 339 (382)
T 1yrr_A 277 PAGANIEQFIFAGKTIYYRNGLCVDENGTLSG---SSLTMIEGVRNLVEHC--------------GIALDEVLRMATLYP 339 (382)
T ss_dssp TTTSCCSEEEETTEEEEECSSCEECTTCCEEE---BCCCHHHHHHHHHHHH--------------CCCHHHHHHHHTHHH
T ss_pred hcCCCCceEEECCEEEEEECCEEEeCCCcCcC---CccCHHHHHHHHHHHh--------------CCCHHHHHHHHHHHH
Confidence 111 011 145667889887 4566653 2357888888765321 499999999999999
Q ss_pred HHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 382 A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
|+++|+++++|+|++||.|||||+|.+ .+|..||++|++||++
T Consensus 340 A~~lg~~~~~G~i~~G~~ADlvvld~~--------------------~~v~~v~~~G~~v~~~ 382 (382)
T 1yrr_A 340 ARAIGVEKRLGTLAAGKVANLTAFTPD--------------------FKITKTIVNGNEVVTQ 382 (382)
T ss_dssp HHHTTCTTTSSSCCTTSBCCEEEECTT--------------------SCEEEEEETTEEEEEC
T ss_pred HHHhCCCCCCCccCCCCCCCEEEECCC--------------------CCEEEEEECCEEEEeC
Confidence 999999888999999999999999998 4899999999999975
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=287.33 Aligned_cols=377 Identities=15% Similarity=0.183 Sum_probs=215.3
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
.+++|++|+|++|+++++ ..+++|+|+||+|++|++.... ..++||++|++|+|||||+|+|+.....
T Consensus 20 ~m~~~~~i~~~~v~~~~~----~~~~~v~i~~g~I~~i~~~~~~-------~~~~id~~g~~v~PG~iD~H~H~~~~g~- 87 (473)
T 3e74_A 20 HMSFDLIIKNGTVILENE----ARVVDIAVKGGKIAAIGQDLGD-------AKEVMDASGLVVSPGMVDAHTHISEPGR- 87 (473)
T ss_dssp --CEEEEEESCEEECSSC----EEECEEEEETTEEEEEESCCCC-------EEEEEECTTCEEEECEEEEEECC------
T ss_pred cCcCCEEEEeeEEECCCC----ceeeeEEEECCEEEEEcCCCCC-------CCcEEECCCCEEecCEEEEecccCCCCC-
Confidence 345789999999997543 3577999999999999986431 2579999999999999999999843110
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-cc-----CHHHHHHHHHHhCCeEEeecc
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ-----HVSEMAKAVELLGLRACLVQS 169 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~-----~~~~~~~~~~~~g~~~~~~~~ 169 (466)
...+ ........++++|||++++++ .. ....+................
T Consensus 88 -----------------------~~~~---~~~~~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~ 141 (473)
T 3e74_A 88 -----------------------SHWE---GYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAA 141 (473)
T ss_dssp ------------------------------CHHHHHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEE
T ss_pred -----------------------CcHH---HHHHHHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEE
Confidence 0001 112234557999999999987 22 122222222221111111000
Q ss_pred cccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEee-------cccccCCHHHHHHHHHHHHHcCCcccee
Q 012333 170 TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI-------RQIMNATDRLLLETRDMAREFKTGIHMH 242 (466)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~l~~~~~~a~~~~~~v~~H 242 (466)
... +.... . +.+..+.. +.+...++.++.. +..+..+++.+.++++.+++.|.++.+|
T Consensus 142 ~~~---~~~~~----~----~~~l~~l~----~~G~~~~K~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 206 (473)
T 3e74_A 142 QLG---GLVSY----N----IDRLHELD----EVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVH 206 (473)
T ss_dssp ECE---ECCTT----C----TTTHHHHH----HHTCSCEEEEC------------CCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEe---ecccc----h----HHHHHHHH----HcCCCEEEEeccccCCcccccccCCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 000 01110 0 11112222 2234556655542 3455678899999999999999999999
Q ss_pred ccCCcchhHHHHh------------hcCCCC--c---hHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEE
Q 012333 243 VAEIPYENQVVMD------------TRKVDH--G---TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSH 302 (466)
Q Consensus 243 ~~~~~~~~~~~~~------------~~~~~~--~---~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~ 302 (466)
+.+.......... ..+... . ....+......+.+..+.|.... +-+.++.+++.|.. ..+
T Consensus 207 ~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la~~~g~~lhi~Hvst~~~l~li~~ak~~G~~vt~e~ 286 (473)
T 3e74_A 207 CENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCES 286 (473)
T ss_dssp CSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 9764221110000 000000 0 01122222223334444443321 11445666666655 456
Q ss_pred Cccchhh-----------ccCC---------ccHHHHHHcCCcEEEccCCCCCCCCCC---HH--------HHHHHHHHH
Q 012333 303 CPASAMR-----------MLGF---------APIKEMLHADICVSLGTDGAPSNNRMS---IV--------DEMYLASLI 351 (466)
Q Consensus 303 ~p~~~~~-----------~~~~---------~~~~~~~~~gi~~~~gsD~~~~~~~~~---~~--------~~~~~~~~~ 351 (466)
||+.... .... ..+++.++.|++++++||+.|.....+ ++ .+.....+.
T Consensus 287 ~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~~~~i~tDh~p~~~~~k~~~f~~~~~G~~g~e~~l~~~~ 366 (473)
T 3e74_A 287 CPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMF 366 (473)
T ss_dssp CTHHHHCCHHHHHHHCGGGCCSSCCCCHHHHHHHHHHHHTTCCCEECCCBCCCCTTTTCSCTTTSCCCBCCGGGHHHHHH
T ss_pred chHhhhcCHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCCHHHcccChhhcCCCcccHHhHHHHHH
Confidence 7753311 0111 245667889999999999987643210 00 011111111
Q ss_pred hcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCccccee
Q 012333 352 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLV 423 (466)
Q Consensus 352 ~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~ 423 (466)
... ....+++++++++++|.|||+++|++ ++|+|++|++|||||+|.+ .|...+ ..+|+....
T Consensus 367 ~~~--------~~~~~~~~~~~~~~~t~~~a~~~g~~-~~G~l~~G~~AD~vv~d~~~~~~~~~~~~~~~~~~sp~~g~~ 437 (473)
T 3e74_A 367 DEA--------VQKRGMSLPMFGKLMATNAADIFGLQ-QKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRT 437 (473)
T ss_dssp HHH--------TTTTCCCHHHHHHHHTHHHHHHTTCT-TSSCCSTTSBCCEEEEESSCCEECCGGGCCSSSCCCTTTTCE
T ss_pred HHH--------HHcCCCCHHHHHHHHhHHHHHHhCCC-CCCccCCCCccCEEEEeCCCCEEECHHHccccCCCCCCCCCE
Confidence 100 12235999999999999999999996 5799999999999999987 332211 112222211
Q ss_pred cccCCCCeeEEEEccEEEEE-CCeeeeccHHHHHH
Q 012333 424 YCMRTENVVSVMCNGQWVMK-NKKILLLMRGRLFQ 457 (466)
Q Consensus 424 ~~~~~~~v~~v~v~G~~v~~-~g~~~~~~~~~~~~ 457 (466)
-..+|..||++|++||+ +|++++...|+++.
T Consensus 438 ---~~g~v~~t~v~G~~v~~~~g~~~~~~~G~~~~ 469 (473)
T 3e74_A 438 ---IGARITKTILRGDVIYDIEQGFPVAPKGQFIL 469 (473)
T ss_dssp ---ESCEEEEEEETTEEEEETTTBCCSCCCCCEEC
T ss_pred ---EeeEEEEEEECCEEEEecCCeEccCCCceeec
Confidence 13579999999999999 99988766666543
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=284.45 Aligned_cols=332 Identities=17% Similarity=0.168 Sum_probs=207.8
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh-------hhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~-------~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
.++|++|+|++|++.. . +.+++|+|+||+|++|++..... ......++++||++|++|+|||||+|+|+
T Consensus 64 ~~~dllI~n~~Vid~~---g-i~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl 139 (569)
T 1e9y_B 64 EELDLIITNALIVDYT---G-IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHF 139 (569)
T ss_dssp TCCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEET
T ss_pred ccCCEEEEeeEEECCC---C-cEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecC
Confidence 4679999999999732 2 46789999999999999754210 00012356899999999999999999998
Q ss_pred cccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-cC--------------HHHHH
Q 012333 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QH--------------VSEMA 154 (466)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~~--------------~~~~~ 154 (466)
.. +.. ..+++++||||+++++. +. ...+.
T Consensus 140 ~~----------------------------p~~--------~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~ 183 (569)
T 1e9y_B 140 IS----------------------------PQQ--------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183 (569)
T ss_dssp TC----------------------------TTH--------HHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHH
T ss_pred CC----------------------------cHH--------HHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHH
Confidence 21 110 35689999999999853 11 12223
Q ss_pred HHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHH
Q 012333 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 234 (466)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~ 234 (466)
++....+++..+.. .+.. .. .+...+.+ +.+... +..+..+..+++.+.++++.|++
T Consensus 184 ~a~~~~~~~~~~~g------~g~~------~~---~~~l~e~~----~~Ga~g----ik~~~~~~~t~e~l~~~l~~A~~ 240 (569)
T 1e9y_B 184 RAAEEYSMNLGFLA------KGNA------SN---DASLADQI----EAGAIG----FKIHEDWGTTPSAINHALDVADK 240 (569)
T ss_dssp HHHTTSSSEEEEEE------ECCC------SC---HHHHHHHH----HTTCSE----EEECGGGCCCHHHHHHHHHHHHH
T ss_pred HHhcccCceEEEEC------CCCc------CC---HHHHHHHH----HcCCCE----EEecCCCCCCHHHHHHHHHHHHH
Confidence 34444455543211 0111 11 11222222 222222 44455556789999999999999
Q ss_pred cCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC----hhhHHHHHhcCCeEEEC-ccchh-
Q 012333 235 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAGVKVSHC-PASAM- 308 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~g~~~~~~-p~~~~- 308 (466)
+|+++.+|+.+..... .....+... .+.+..+.|..... ++.++++++.|+..+.+ |+..+
T Consensus 241 ~g~~V~iHa~~~~e~g-----------~~~~~la~~--~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv~~~~~~ptl~~t 307 (569)
T 1e9y_B 241 YDVQVAIHTDTLNEAG-----------CVEDTMAAI--AGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFT 307 (569)
T ss_dssp TTCEEEECCCTTCSSC-----------CHHHHHHHH--TTCCEEETTTTSTTSCSTTTGGGGGGSTTEEEEECGGGCSCB
T ss_pred hCCEEEEEcCCcccch-----------HHHHHHHHH--cCCCEEEEEcccCcccccHHHHHHHHHcCCeeEeeCCccccc
Confidence 9999999997522110 011112111 23444555555443 67888888888754332 22100
Q ss_pred --------------hc-c-----------------CCccHHHHHHcCCcEEEccCCCCCCCC----CCHHHHHHHHHHHh
Q 012333 309 --------------RM-L-----------------GFAPIKEMLHADICVSLGTDGAPSNNR----MSIVDEMYLASLIN 352 (466)
Q Consensus 309 --------------~~-~-----------------~~~~~~~~~~~gi~~~~gsD~~~~~~~----~~~~~~~~~~~~~~ 352 (466)
+. . ...+++.+.+.|+++++|||+++.+.. .++|...... ...
T Consensus 308 ~~~~~~~~d~~~v~h~l~~~~~ed~~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~~~~~~~~~~-~~~ 386 (569)
T 1e9y_B 308 VNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQTADKN-KKE 386 (569)
T ss_dssp TTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHHHHHHHHHH-HHH
T ss_pred cchhhhhhchhhhhhhcCcccHHHHHHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCcccccccchhhHHHHh-Hhh
Confidence 00 0 111234456689999999999875421 1123210100 011
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCee
Q 012333 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 432 (466)
Q Consensus 353 ~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 432 (466)
.+. .........++++.++++++|.|||+++|+++++|+|++||.|||||||.+.+ ..++.
T Consensus 387 ~G~--l~~~~~~~~~ls~~~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~-----------------~~~v~ 447 (569)
T 1e9y_B 387 FGR--LKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF-----------------GVKPN 447 (569)
T ss_dssp HCS--CSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT-----------------TTCCS
T ss_pred ccC--cchhhccccCCCHHHHHHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc-----------------CCCcc
Confidence 111 10001124569999999999999999999988899999999999999999843 15899
Q ss_pred EEEEccEEEEEC
Q 012333 433 SVMCNGQWVMKN 444 (466)
Q Consensus 433 ~v~v~G~~v~~~ 444 (466)
.||++|++||.+
T Consensus 448 ~v~~~G~iv~~~ 459 (569)
T 1e9y_B 448 MIIKGGFIALSQ 459 (569)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEcC
Confidence 999999999875
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=290.62 Aligned_cols=381 Identities=13% Similarity=0.150 Sum_probs=219.0
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|++|+++++ ..+++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|+....+ +.
T Consensus 26 ~~~li~n~~v~~~~~----~~~~~V~I~~grI~~Ig~~~~~----~-~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~- 94 (501)
T 2vm8_A 26 DRLLIKGGKIVNDDQ----SFYADIYMEDGLIKQIGENLIV----P-GGVKTIEAHSRMVIPGGIDVHTRFQMPDQ-GM- 94 (501)
T ss_dssp CCEEEEEEEEECSSC----EEEEEEEEETTEEEEEESSCCC----C-SSSCEEECTTCEEEECEEEEEECTTCEET-TE-
T ss_pred CCEEEEeeEEECCCC----ceEeeEEEECCEEEEeccCCCC----C-CCCeEEECCCCEEeeCEEEeeeccccccc-CC-
Confidence 689999999997542 2568999999999999975321 1 25689999999999999999999954321 00
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCCe-EEeecccccC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLR-ACLVQSTMDC 173 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~ 173 (466)
...++.+ ...++++++||||+++++.. ......+.....+.+ ..........
T Consensus 95 -------------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 151 (501)
T 2vm8_A 95 -------------------TSADDFF----QGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDYSLHVD 151 (501)
T ss_dssp -------------------ECSSCHH----HHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred -------------------CcHHHHH----HHHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCeeEEEEEEE
Confidence 0111111 22356889999999996532 222222222221111 0000011101
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHH
Q 012333 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (466)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~ 253 (466)
..+ + ......+..+..++ .+...++.++........+.+.+.++++.+++++.++.+|+.+........
T Consensus 152 ~~~----~----~~~~~~e~~~l~~~---~G~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~ 220 (501)
T 2vm8_A 152 ISE----W----HKGIQEEMEALVKD---HGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQ 220 (501)
T ss_dssp CCS----C----SHHHHHHHHHHHHH---SCCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHH
T ss_pred ecC----C----CcccHHHHHHHHHh---CCceEEEEeeccCCCCCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHH
Confidence 111 1 11223333333332 344556655544444567889999999999999999999996532111111
Q ss_pred Hh--hcCCCCc--------------h-HHHHhhhccCCCCeeEEEeecCC-hhhHHHHHhcCCeEEECccchh-------
Q 012333 254 MD--TRKVDHG--------------T-VTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVKVSHCPASAM------- 308 (466)
Q Consensus 254 ~~--~~~~~~~--------------~-~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~g~~~~~~p~~~~------- 308 (466)
.. ..+.... . ...+......+.+..+.|+.... .+.++.+++.|+.+. +|....
T Consensus 221 ~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~h~~~~~~~~~i~~~~~~G~~v~-~~~~~~~l~~~~~ 299 (501)
T 2vm8_A 221 QRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYITKVMSKSSAEVIAQARKKGTVVY-GEPITASLGTDGS 299 (501)
T ss_dssp HHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHTTCCEE-EEEBHHHHHCCGG
T ss_pred HHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcHHHHHHHHHHHhCCCcEE-EEEChhHhhcChh
Confidence 11 1111100 0 01111111234455566654211 233455577887763 332210
Q ss_pred -------h----c----------cCCccHHHHHHcCCcEEEccCCCCCCCCCCH-----H---------HHHHHHHHHhc
Q 012333 309 -------R----M----------LGFAPIKEMLHADICVSLGTDGAPSNNRMSI-----V---------DEMYLASLINK 353 (466)
Q Consensus 309 -------~----~----------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~-----~---------~~~~~~~~~~~ 353 (466)
. . ....+++++++.|+.+++|||+.+.....++ + .+++.......
T Consensus 300 ~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~ 379 (501)
T 2vm8_A 300 HYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDK 379 (501)
T ss_dssp GGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHH
T ss_pred hhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecCCCCChhhhhcccCChhhCCCCCccHHHHHHHHHHH
Confidence 0 0 0122345689999999999998765311000 0 01111111111
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCC--------cccceecc
Q 012333 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD--------RITSLVYC 425 (466)
Q Consensus 354 ~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~--------~~~~~~~~ 425 (466)
. ....++|++++++++|.|||+++|+++++|+|++|++|||||||.+.....+..+ |+.....
T Consensus 380 ~--------~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~s~~~~~~~~g~~~- 450 (501)
T 2vm8_A 380 A--------VVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMEC- 450 (501)
T ss_dssp H--------TTTTSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEEEEEEEECCTTTSSSSCSCCTTTTCEE-
T ss_pred H--------HHcCCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEcCCCCeeeccccccccccCCCccCcEe-
Confidence 0 1223599999999999999999999878999999999999999998422122221 2211111
Q ss_pred cCCCCeeEEEEccEEEEECCeee-eccHHHHH
Q 012333 426 MRTENVVSVMCNGQWVMKNKKIL-LLMRGRLF 456 (466)
Q Consensus 426 ~~~~~v~~v~v~G~~v~~~g~~~-~~~~~~~~ 456 (466)
...|..||++|++||++|+++ +...|+++
T Consensus 451 --~~~v~~v~v~G~~v~~~g~~~~~~~~G~~l 480 (501)
T 2vm8_A 451 --RGSPLVVISQGKIVLEDGTLHVTEGSGRYI 480 (501)
T ss_dssp --EEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred --CceEEEEEECCEEEEECCeEccCCCCCcee
Confidence 247899999999999999987 44445544
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=280.87 Aligned_cols=347 Identities=14% Similarity=0.101 Sum_probs=210.4
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCC-cEEeecccccccCCcccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS-QILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G-~~v~PG~ID~H~H~~~~~~~ 95 (466)
.++|++|+|++|++ +. +++|+|+||+|++|++... + ++.++||++| ++|+|||||+|+|+.....
T Consensus 3 ~~~~~~i~~~~v~~--~~-----~~~v~i~~g~I~~ig~~~~-----~-~~~~~iD~~g~~~v~PG~ID~H~H~~~~~~- 68 (379)
T 2ics_A 3 LDYDLLIKNGQTVN--GM-----PVEIAIKEKKIAAVAATIS-----G-SAKETIHLEPGTYVSAGWIDDHVHCFEKMA- 68 (379)
T ss_dssp -CEEEEEEEEECTT--SC-----EEEEEEETTEEEEEESCCC-----C-CEEEEEECCTTCEEEECEEEEEECCCTTSS-
T ss_pred ccccEEEECCEEEc--CC-----cceEEEECCEEEEecCCCC-----C-CCCcEEeCCCCEEEccCEEEeccccCccCc-
Confidence 34689999999995 21 4699999999999987431 1 2457999999 9999999999999953210
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc---cCHHHHHHHHHHhCCeE--Eeeccc
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRA--CLVQST 170 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~--~~~~~~ 170 (466)
..+.. ....++++||||+++++. .....+.+..+..+.+. +.....
T Consensus 69 --------------------~~~~~---------~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 119 (379)
T 2ics_A 69 --------------------LYYDY---------PDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISK 119 (379)
T ss_dssp --------------------SSCCC---------HHHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESST
T ss_pred --------------------cccCc---------hhhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccc
Confidence 00000 113478999999998763 23445555555555332 222111
Q ss_pred ccCCCCCCcc-cccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHH-cCCccceeccCCcc
Q 012333 171 MDCGEGLPAS-WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIPY 248 (466)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~-~~~~v~~H~~~~~~ 248 (466)
. |..+. ..........+...+.++++.. +-..++.+.........+.+.+.++++++++ +++++.+|+.+...
T Consensus 120 --~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~ 194 (379)
T 2ics_A 120 --W--GIVAQDELADLSKVQASLVKKAIQELPD-FVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPP 194 (379)
T ss_dssp --T--TTSSSCTTSSGGGCCHHHHHHHHHHCTT-TEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSS
T ss_pred --c--CCCCHHHHHHHHHHHHHHHHHHHHhhhC-cceEEEEeccccccccchHHHHHHHHHHHHHhcCCeEEEeCCCCcc
Confidence 1 22111 1100011112233344433211 1122333333333344677888899999999 99999999976432
Q ss_pred hhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeec--------C-Ch---hhHHHHHhcCCeEEECccchhhccCCccH
Q 012333 249 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW--------V-NH---TEIGLLSRAGVKVSHCPASAMRMLGFAPI 316 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~--------~-~~---~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 316 (466)
....... .+.. + ..+.|+.. . ++ +.++++++.|+.+.++|.+.. ....++
T Consensus 195 ~~~~~~~-------------~~~~-g--~~~~H~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~p~~~~--~~~~~~ 256 (379)
T 2ics_A 195 HLDEILA-------------LMEK-G--DVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGTDS--FNFHVA 256 (379)
T ss_dssp CHHHHHH-------------HCCT-T--CEEESTTCCSTTSSEETTTTEECHHHHHHHHTTCEEECCCTTTS--CCHHHH
T ss_pred hHHHHHH-------------Hhhc-C--CeeeeccCCCccchhhccCHHHHHHHHHHHHcCCEEEecCCCCC--cCHHHH
Confidence 2111111 1110 1 13344332 2 22 788888899999999987442 234568
Q ss_pred HHHHHcC-CcEEEccCCCCC----CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 317 KEMLHAD-ICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 317 ~~~~~~g-i~~~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
+.+++.| ++++++||+++. .+...+...+... .. .++|++++++++|.|||++||+++ +
T Consensus 257 ~~~~~~G~~~~~l~TD~~~~~~~~~~~~~~~~~l~~~--~~-------------~~ls~~~~~~~~T~n~A~~lgl~~-~ 320 (379)
T 2ics_A 257 ETALREGMKAASISTDIYIRNRENGPVYDLATTMEKL--RV-------------VGYDWPEIIEKVTKAPAENFHLTQ-K 320 (379)
T ss_dssp HHHHHTTCCCSBCCCCBCHHHHHSSSCCCHHHHHHHH--HH-------------HTCCHHHHHHTTTHHHHHHTTCTT-S
T ss_pred HHHHHcCCCcceEeccCcccCCCCCcHhHHHHHHHHH--HH-------------cCCCHHHHHHHHHHHHHHHhCCCC-C
Confidence 8899999 888999998521 1122233333221 11 149999999999999999999976 8
Q ss_pred cccccCCccCEEEEcCCCCCCCCcCCcc-cceecccCCCCeeEEEEccEEEEECCee
Q 012333 392 GSLEAGKKADMVVVDPFSWPMVPVHDRI-TSLVYCMRTENVVSVMCNGQWVMKNKKI 447 (466)
Q Consensus 392 G~i~~G~~ADlvv~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 447 (466)
|+|++|++|||||+|.+.+. ....++ ...++.....+|..||++|++||++|..
T Consensus 321 G~l~~G~~ADlvv~d~~~~~--~~~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~ 375 (379)
T 2ics_A 321 GTLEIGKDADLTIFTIQAEE--KTLTDSNGLTRVAKEQIRPIKTIIGGQIYDNEGHH 375 (379)
T ss_dssp SSCCTTSBCCEEEEEEEEEE--EEEECTTSCEEEEEEEEEEEEEEETTEEEEC----
T ss_pred cCCCCCCccCEEEEeccccc--ceeecCCCCEEEeeeeeeeEEEEECCEEEecCCcc
Confidence 99999999999999976221 011111 1111211223899999999999999863
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=283.41 Aligned_cols=376 Identities=13% Similarity=0.087 Sum_probs=221.1
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
++++|+|++|+++++ . .+++|+|+||+|++|++.. .+.++||++|++|+|||||+|+|+.......
T Consensus 1 m~~~i~~~~v~~~~~--~--~~~~v~I~~G~I~~i~~~~--------~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~-- 66 (490)
T 3dc8_A 1 MSTVIKGGTIVTADL--T--YKADVKVEGGRIVEIGPNL--------SGAETLDATGCYVMPGGIDPHTHLEMPFMGT-- 66 (490)
T ss_dssp -CEEEESCEEECSSC--E--EECEEEEETTEEEEEESSC--------CCSEEEECTTCEEEECEEEEEECTTCEETTE--
T ss_pred CcEEEEccEEECCCC--c--eeeeEEEECCEEEEeccCC--------CCCeEEECCCCEEecCEEeeccccCCCCCCC--
Confidence 478999999997543 2 5679999999999999753 2568999999999999999999995422100
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCCeEEeecccccCC
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCG 174 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (466)
...++.. ...+.++++|||++++++.. ......+.......+.........
T Consensus 67 -------------------~~~e~~~----~~~~aa~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~~~~d~~~~~-- 121 (490)
T 3dc8_A 67 -------------------YSSDDFE----SGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFHM-- 121 (490)
T ss_dssp -------------------ECSCCHH----HHHHHHHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTTCSSEEEEEE--
T ss_pred -------------------CCHHHHH----HHHHHHHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhcccceeeeEE--
Confidence 1111111 22355789999999997532 223333333332212111111110
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHH
Q 012333 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 254 (466)
++. ......+.+..++.+ +.+...++.++........+++.+.++++.++++|.++.+|+.+.........
T Consensus 122 -~~~-----~~~~~~l~el~~l~~---~~G~~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~ 192 (490)
T 3dc8_A 122 -AIT-----WWGEQVFNEMETIVK---DKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPLVHAENGDVVAQLQA 192 (490)
T ss_dssp -ECC-----SCSHHHHHHHHHHHH---HSCCCEEEEESCSTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHH
T ss_pred -EEe-----cCcHHHHHHHHHHHH---hCCCCEEEEEecCCCCccCCHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHH
Confidence 011 012222333333331 34445567666666667779999999999999999999999764322111100
Q ss_pred hh--cCC--------CCch-------HHHHhhhccCCCCeeEEEeecCCh----hhHHHHHhcCCeEE--ECccchhh--
Q 012333 255 DT--RKV--------DHGT-------VTFLDKIEFLQNNLLSAHTVWVNH----TEIGLLSRAGVKVS--HCPASAMR-- 309 (466)
Q Consensus 255 ~~--~~~--------~~~~-------~~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~g~~~~--~~p~~~~~-- 309 (466)
.. .+. .... ...+...+..+.+. |..|++. +.++.+++.|..+. +||.....
T Consensus 193 ~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~l---hi~HvSt~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~ 269 (490)
T 3dc8_A 193 KLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPV---YIVHTSCEQAHEAIRRARAKGMRVFGEPLIQHLTLDE 269 (490)
T ss_dssp HHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCE---EESSCCSHHHHHHHHHHHHTTCCEEECCBHHHHHCCG
T ss_pred HHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcE---EEEeCCCHHHHHHHHHHHHCCCeEEEEEchHHheeCH
Confidence 00 000 0000 01122222233344 4444443 34566667777665 45532210
Q ss_pred -------------c---------cCCccHHHHHHcCCcEEEccCCCCCCCCC------CHHH--------HHHHHHHHhc
Q 012333 310 -------------M---------LGFAPIKEMLHADICVSLGTDGAPSNNRM------SIVD--------EMYLASLINK 353 (466)
Q Consensus 310 -------------~---------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~------~~~~--------~~~~~~~~~~ 353 (466)
. .....+++.+..|...+++|||.|+.... ++.. +..+..+...
T Consensus 270 ~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~~~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~ 349 (490)
T 3dc8_A 270 TEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTY 349 (490)
T ss_dssp GGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHH
T ss_pred HHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCCCHHHhhccCCChhhCCCChHHHHHHHHHHHHH
Confidence 0 01124566788899999999998763110 0000 0001111111
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccceecc
Q 012333 354 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITSLVYC 425 (466)
Q Consensus 354 ~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~~~~~ 425 (466)
.....++|++++++++|.|||+++|+++++|+|++|++|||||||++ .|+..+ ..+|+....+
T Consensus 350 --------~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~~G~~ADlvv~d~~~~~~i~~~~~~s~~~~sp~~g~~~- 420 (490)
T 3dc8_A 350 --------GVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAIDYNVFEGKTV- 420 (490)
T ss_dssp --------HTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCEE-
T ss_pred --------HHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCcCCEEEEecCcceEechhhccccCCCCcccCcEE-
Confidence 01234599999999999999999999878999999999999999988 332211 1223322211
Q ss_pred cCCCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 426 MRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 426 ~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
..+|..||++|++||++|++.... .|+++
T Consensus 421 --~g~v~~t~~~G~~v~~~g~~~~~~~~G~~~ 450 (490)
T 3dc8_A 421 --TGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450 (490)
T ss_dssp --EEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred --eeEEEEEEECCEEEEECCEEcccCCCceec
Confidence 247999999999999999987543 45544
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=283.26 Aligned_cols=362 Identities=17% Similarity=0.176 Sum_probs=210.3
Q ss_pred CcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccc
Q 012333 15 LGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (466)
Q Consensus 15 ~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~ 94 (466)
...|++++|+|++|++++ ...+.+++|+|+||+|++|++... + .+.++||++|++|+|||||+|+|+.....
T Consensus 43 ~~~mm~~~i~~~~v~~~~--~~~~~~~~v~i~~g~I~~i~~~~~-----~-~~~~~iD~~g~~v~PGlID~H~H~~~~~~ 114 (467)
T 1xrt_A 43 DRWMLKLIVKNGYVIDPS--QNLEGEFDILVENGKIKKIDKNIL-----V-PEAEIIDAKGLIVCPGFIDIHVHLRDPGQ 114 (467)
T ss_dssp ---CCEEEEESCEEEEGG--GTEEEECEEEEETTEEEEEESSCC-----C-SSEEEEECTTSEEEECEEEEEECCCTTTC
T ss_pred ccceeeEEEEeeEEECCC--CCceecceEEEECCEEEEecCCCC-----C-CCCcEEeCCCCEEccCEEEEeecccCCCC
Confidence 345678999999999754 334577899999999999987432 1 24579999999999999999999843100
Q ss_pred ccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC--------HHHHHHHHHHhC-CeEE
Q 012333 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLG-LRAC 165 (466)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--------~~~~~~~~~~~g-~~~~ 165 (466)
+| .++. ....+.++++||||+++++... .....+.....| ++.+
T Consensus 115 ----------~~-------------~~~~----~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 167 (467)
T 1xrt_A 115 ----------TY-------------KEDI----ESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVL 167 (467)
T ss_dssp ----------TT-------------TCCH----HHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------Cc-------------hhhH----HHHHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEE
Confidence 00 0111 1223557899999999987421 234455556667 6654
Q ss_pred eecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccC
Q 012333 166 LVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 245 (466)
....... ....... .+..++.+. +... +........+.+.+.++++.+++++.++.+|+.+
T Consensus 168 ~~g~~~~-------~~~~~~~----~~~~~l~~~----g~~~----i~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~ 228 (467)
T 1xrt_A 168 PTGTITK-------GRKGKEI----ADFYSLKEA----GCVA----FTDDGSPVMDSSVMRKALELASQLGVPIMDHCED 228 (467)
T ss_dssp ECBCSBG-------GGCSSSB----CCHHHHHHH----TCCC----BCCTTSCCCCHHHHHHHHHHHHHHTCEEEECCCG
T ss_pred EEeeecC-------CCCcccH----HHHHHHHHc----CCEE----EEcCCCCCCCHHHHHHHHHHHHhcCCEEEEECCC
Confidence 3322111 1000011 111222221 1111 2334445678899999999999999999999976
Q ss_pred CcchhHHH-----HhhcC---CC--CchHHHHhhhccCCCCeeEEEeecCChh----hHHHHHhcC--CeEEECccchhh
Q 012333 246 IPYENQVV-----MDTRK---VD--HGTVTFLDKIEFLQNNLLSAHTVWVNHT----EIGLLSRAG--VKVSHCPASAMR 309 (466)
Q Consensus 246 ~~~~~~~~-----~~~~~---~~--~~~~~~~~~~~~~~~~~~~~H~~~~~~~----~~~~~~~~g--~~~~~~p~~~~~ 309 (466)
........ ...++ .. ....................|..+++.. .++++++.| +.+.+||.....
T Consensus 229 ~~~~~~~l~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~~~hi~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~ 308 (467)
T 1xrt_A 229 DKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLF 308 (467)
T ss_dssp GGGTC--------------------CHHHHHHHHHHHHHHHCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC-
T ss_pred HHHHHHHHhcCccchhcccccCChHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhc
Confidence 44321110 00000 00 0000000000111111224456665533 345555788 556788864211
Q ss_pred -------------c-------cCCccHHHHHHcCCcEEEccCCCCCCCCC-CHHHHH---------HHHHHHhccccccc
Q 012333 310 -------------M-------LGFAPIKEMLHADICVSLGTDGAPSNNRM-SIVDEM---------YLASLINKGREVFA 359 (466)
Q Consensus 310 -------------~-------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~ 359 (466)
. ....+++.+++.|+++++|||+.+.+... ++|..+ +...... ..
T Consensus 309 ~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~~~~~~~~~~g~~g~e~~l~~~l~-~~---- 383 (467)
T 1xrt_A 309 TEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVEFAMPGIIGLQTALPSALE-LY---- 383 (467)
T ss_dssp ---------------------CCHHHHHHHHHHTCSCEECCCBCCCCC-----------CCCCGGGHHHHHHH-HH----
T ss_pred CHhHhhccCceEEEcCCCCCHHHHHHHHHHHhCCceEEEeeCCCCCChhHhcccccCCCCCccHHHHHHHHHH-HH----
Confidence 0 12235677899999999999997654321 122211 1111111 00
Q ss_pred CCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCc--------CCcccceecccCCCCe
Q 012333 360 NGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITSLVYCMRTENV 431 (466)
Q Consensus 360 ~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~~~~~v 431 (466)
....+|++++++++|.|||+++|++ +|+|++||+|||||+|.++....+. .+|+..+.. ..+|
T Consensus 384 ----~~g~ls~~~al~~aT~n~A~~lgl~--~G~I~~G~~ADlvvld~~~~~~i~~~~~~~~~~~~p~~g~~~---~~~V 454 (467)
T 1xrt_A 384 ----RKGIISLKKLIEMFTINPARIIGVD--LGTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVL---KGKV 454 (467)
T ss_dssp ----HTTSSCHHHHHHHHTHHHHHHHTCS--CSCCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTTTTCEE---EEEE
T ss_pred ----HcCCCCHHHHHHHhccCHHHHhCCC--cccccCCCCCCEEEEeCCCCEEEChHHccCcCCCCCccCCEE---eEEE
Confidence 0113999999999999999999995 8999999999999999883211111 223332211 3579
Q ss_pred eEEEEccEEEEEC
Q 012333 432 VSVMCNGQWVMKN 444 (466)
Q Consensus 432 ~~v~v~G~~v~~~ 444 (466)
..||++|++||++
T Consensus 455 ~~viv~G~~v~~~ 467 (467)
T 1xrt_A 455 IYTIKDGKMVYKD 467 (467)
T ss_dssp EEEEETTEEEEEC
T ss_pred EEEEECCEEEecC
Confidence 9999999999985
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=272.53 Aligned_cols=355 Identities=17% Similarity=0.161 Sum_probs=215.4
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++++ ....+++|+|+||+|++|++. ++.++||++|++|+|||||+|+|+.....
T Consensus 2 ~~i~~~~v~~~~---~~~~~~~v~i~~g~I~~i~~~---------~~~~~id~~g~~v~PG~iD~H~H~~~~~~------ 63 (426)
T 2z00_A 2 ILIRNVRLVDAR---GERGPADVLIGEGRILSLEGG---------EAKQVVDGTGCFLAPGFLDLHAHLREPGE------ 63 (426)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEETTEEEESBCC---------CCSEEEECTTCEEEECEEEEEECCCTTTC------
T ss_pred EEEEeeEEECCC---CceecceEEEECCEEEEEecC---------CCceEEeCCCCEEecCEEEeccccCCCCC------
Confidence 689999999643 345788999999999999864 14579999999999999999999953210
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC--------HHHHHHHHHHhC-CeEEeecccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLG-LRACLVQSTM 171 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--------~~~~~~~~~~~g-~~~~~~~~~~ 171 (466)
.| .++. ......++++||||+++++... .....+.....+ ++.+....+.
T Consensus 64 ----~~-------------~~~~----~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (426)
T 2z00_A 64 ----EV-------------KEDL----FSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALT 122 (426)
T ss_dssp ----TT-------------TCCH----HHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSB
T ss_pred ----Cc-------------hHHH----HHHHHHHHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEee
Confidence 01 0111 1223568899999999986421 334455566666 6653322111
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhH
Q 012333 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (466)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 251 (466)
+....... .+..++.+. + .. .++.+..+..+.+.+.++++.++++|+++.+|+.+......
T Consensus 123 -------~~~~~~~~----~~~~~l~~~----g--~~--~i~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 183 (426)
T 2z00_A 123 -------EKQEGKTL----TPAGLLREA----G--AV--LLTDDGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRN 183 (426)
T ss_dssp -------GGGCSSSB----CCHHHHHHH----T--CC--EEECTTSCCCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTT
T ss_pred -------cCCChhhH----HHHHHHHHc----C--CE--EEECCCcCCCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhh
Confidence 11100011 111222221 1 11 13445556778999999999999999999999976432110
Q ss_pred ---------HHHhhcCCCC-----chHHHHhhhcc------CCCCeeEEEeecCC-hhhHHHHHhcCCeE--EECccchh
Q 012333 252 ---------VVMDTRKVDH-----GTVTFLDKIEF------LQNNLLSAHTVWVN-HTEIGLLSRAGVKV--SHCPASAM 308 (466)
Q Consensus 252 ---------~~~~~~~~~~-----~~~~~~~~~~~------~~~~~~~~H~~~~~-~~~~~~~~~~g~~~--~~~p~~~~ 308 (466)
......+... .....+..... .+.+..+.|+.... .+.++++++.|+.+ .+||.+..
T Consensus 184 ~~~~~g~~~~~~g~~~~~~~~e~~~~~~~~~~a~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~ 263 (426)
T 2z00_A 184 GVMNDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAGLPVTAEATPHHLT 263 (426)
T ss_dssp CSEECSHHHHHHTCCEECHHHHHHHHHHHHHHHHHHHHHCSSCCCEEETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHH
T ss_pred hhhccCccchhcccccCChHHHHHHHHHHHHHHhhccccccCCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhE
Confidence 0000000000 00112222222 45667788887532 35677788888664 46887543
Q ss_pred hc-----------cCCcc---------HHHHHHcCCcEEEccCCCCCCCCC--CHHH---------HHHHHHHHhccccc
Q 012333 309 RM-----------LGFAP---------IKEMLHADICVSLGTDGAPSNNRM--SIVD---------EMYLASLINKGREV 357 (466)
Q Consensus 309 ~~-----------~~~~~---------~~~~~~~gi~~~~gsD~~~~~~~~--~~~~---------~~~~~~~~~~~~~~ 357 (466)
.. ...+| ++++++.|+++++|||+.|..... +++. +..........
T Consensus 264 ~~~~~~~~~~~~~~~~~plr~~~~~~~l~~~l~~G~~~~lgsD~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--- 340 (426)
T 2z00_A 264 LTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKDLLRAPFGIPSLEVAFPLLYTEL--- 340 (426)
T ss_dssp CCGGGGGGCCGGGCCSSCCCCHHHHHHHHHHHHHTSSCEECCCBCCCCTTGGGSCTTTSCCCBCCTTTHHHHHHHHT---
T ss_pred eCHhHhhccCceEEEeCCCCCHHHHHHHHHHHhCCCcEEEecCCCCCCHHHccCChhhCCCCcccHHHHHHHHHHHH---
Confidence 21 12233 335667999999999985543210 0000 00111111100
Q ss_pred ccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC--c-----CCcccceecccCCCC
Q 012333 358 FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP--V-----HDRITSLVYCMRTEN 430 (466)
Q Consensus 358 ~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~--~-----~~~~~~~~~~~~~~~ 430 (466)
.....+|++++++++|.|||+++|++ +|+|++|++|||||+|.+++...+ . .+|+..+.+ ..+
T Consensus 341 -----~~~~~ls~~~~l~~~T~n~A~~lgl~--~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~p~~g~~~---~~~ 410 (426)
T 2z00_A 341 -----HLKRGFPLQRLVELFTDGPRRVLGLP--PLHLEEGAEASLVLLSPKERPVDPSAFASKARYSPWAGWVL---GGW 410 (426)
T ss_dssp -----HHHHCCCHHHHHHHHTHHHHHHHTCC--CCCSSTTSBCCEEEEECCCEECCGGGCSSSCCCCTTTTCEE---CCE
T ss_pred -----HHcCCCCHHHHHHHHhhhHHHHhCCC--cccccCCCCCCEEEEeCCcEEEcHHHccccCCCCCcCCCEE---EEE
Confidence 00124999999999999999999994 899999999999999997543222 1 222222211 358
Q ss_pred eeEEEEccEEEEECCe
Q 012333 431 VVSVMCNGQWVMKNKK 446 (466)
Q Consensus 431 v~~v~v~G~~v~~~g~ 446 (466)
|..||++|++||++++
T Consensus 411 v~~t~v~G~~v~~~~~ 426 (426)
T 2z00_A 411 PVLTLVAGRIVHEALK 426 (426)
T ss_dssp EEEEEETTEEEEECCC
T ss_pred EEEEEECCEEEEecCC
Confidence 9999999999999875
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=279.67 Aligned_cols=346 Identities=18% Similarity=0.187 Sum_probs=205.8
Q ss_pred CCCCCCCCCCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhh-------hhccCCCeEEeCCCcEE
Q 012333 6 SGGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQIL 78 (466)
Q Consensus 6 ~~~~~~~~~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~-------~~~~~~~~~iD~~G~~v 78 (466)
++|++...+....+|++|+|++|++.. . +..++|+|+||||++|++..+... ....+++++||++|++|
T Consensus 54 ~~~~~~~~~~~~~~dllI~n~~vvd~~---g-~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v 129 (570)
T 4ac7_C 54 MGENGTYTRTENVLDLLLTNALILDYT---G-IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIV 129 (570)
T ss_dssp TTBCSSCCTTTTBCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEE
T ss_pred cCcCCCCCcccCCCCEEEECeEEECCC---C-cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEE
Confidence 444433322344689999999999632 2 367899999999999998643200 00123678999999999
Q ss_pred eecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---------
Q 012333 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------- 149 (466)
Q Consensus 79 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--------- 149 (466)
+|||||+|+|+.. +.. ...++.+||||+++.+...
T Consensus 130 ~PG~ID~HvH~~~----------------------------Pg~--------~~aAl~gGvTTvv~gg~~p~~~~n~~p~ 173 (570)
T 4ac7_C 130 TAGGIDTHVHFIN----------------------------PDQ--------VDVALANGITTLFGGGTGPAEGSKATTV 173 (570)
T ss_dssp EECEEEEEEECCC----------------------------TTH--------HHHHHHTTEEEEEEECSSSCHHHHHSSC
T ss_pred eeCEEecccccCC----------------------------cch--------HHHHHhcCCeEEEecCcCcccccCCcCc
Confidence 9999999999821 111 1458899999999633210
Q ss_pred ------HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHH
Q 012333 150 ------VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 223 (466)
Q Consensus 150 ------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 223 (466)
...+.++.....++..+... +.. . ...+..+. .+.+...++. ...+..+++
T Consensus 174 ~~~~~~l~~~l~aa~~~~v~~~~~g~------~~~------~---~l~el~el----~~aGa~gfK~----~~~~~~~~~ 230 (570)
T 4ac7_C 174 TPGPWNIEKMLKSTEGLPINVGILGK------GHG------S---SIAPIMEQ----IDAGAAGLKI----HEDWGATPA 230 (570)
T ss_dssp CCHHHHHHHHHHHHTTCSSEEEEEEE------CCC------S---SHHHHHHH----HHHTCCEEEE----EGGGCCCHH
T ss_pred CCcHHHHHHHHHHhhhCCeeEEEEec------cCC------c---CHHHHHHH----HHcCCCeEee----ccCCCCCHH
Confidence 11122222222333222110 000 1 11222222 2223233333 233456889
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCee---EEEeecC-ChhhHHHHHhcCCe
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL---SAHTVWV-NHTEIGLLSRAGVK 299 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~H~~~~-~~~~~~~~~~~g~~ 299 (466)
.+.++++.+++++.++.+|+.+...... ..+.+..+. +.... +.|+... .++.++++.+.++.
T Consensus 231 ~L~~aL~~A~~~g~~V~iHae~l~e~g~-----------Vedalea~~--Gr~ih~~HiEgag~~hapd~i~~~~~~~vl 297 (570)
T 4ac7_C 231 SIDRSLTVADEADVQVAIHSDTLNEAGF-----------LEDTLRAIN--GRVIHSFHVEGAGGGHAPDIMAMAGHPNVL 297 (570)
T ss_dssp HHHHHHHHHHHHTCEEEEECCTTCSSCC-----------HHHHHHHHT--TCCEEETTTTSTTSSSTTTGGGGGGSTTEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCcchhhH-----------HHHHHHHhC--CCcceeEeeeccccccChHHHHHhccCCcc
Confidence 9999999999999999999985322110 111222211 11111 1111111 14555555555554
Q ss_pred EEE-Ccc---ch------------------------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHH-HH
Q 012333 300 VSH-CPA---SA------------------------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIV-DE 344 (466)
Q Consensus 300 ~~~-~p~---~~------------------------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~-~~ 344 (466)
... +|. .. .+....++++.+++.|+.+++|||++..+...... ..
T Consensus 298 ps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~~~~~ 377 (570)
T 4ac7_C 298 PSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRT 377 (570)
T ss_dssp EBCCGGGSSCBTTHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHH
T ss_pred ccccCCCCCcccchhHHhhhheeeecccCccccchhHHHHhhhhhhhcccccchhhcCCEEEEECcccccCCcCcccCcH
Confidence 432 222 00 01123457788999999999999998644222222 22
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceec
Q 012333 345 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 424 (466)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 424 (466)
...+......+..........+.++++++|+++|.|||+++|+++++|+|++||.|||||||.+.+.
T Consensus 378 ~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~~------------- 444 (570)
T 4ac7_C 378 WQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFG------------- 444 (570)
T ss_dssp HHHHHHHHHHHCSCTTCCTTCCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGTT-------------
T ss_pred HHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchhcc-------------
Confidence 2222211111111111112346799999999999999999999988999999999999999988332
Q ss_pred ccCCCCeeEEEEccEEEEEC
Q 012333 425 CMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 425 ~~~~~~v~~v~v~G~~v~~~ 444 (466)
.++..||++|++||+.
T Consensus 445 ----~~v~~t~~~G~~v~~~ 460 (570)
T 4ac7_C 445 ----VKADRVIKGGIIAYAQ 460 (570)
T ss_dssp ----TSCSEEEETTEEEEEE
T ss_pred ----CceEEEEECCEEEEcc
Confidence 4789999999999974
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=275.86 Aligned_cols=366 Identities=14% Similarity=0.146 Sum_probs=216.0
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
+|++|+|++|++.+ . ...+++|+|+||+|++|++..+. .+.++||++|++|+|||||+|+|+....
T Consensus 1 m~~~i~~~~v~~~~--~-~~~~~~v~i~~g~I~~i~~~~~~------~~~~~id~~g~~v~PG~iD~H~H~~~~~----- 66 (428)
T 3mpg_A 1 MNYLFKNGRYMNEE--G-KIVATDLLVQDGKIAKVAENITA------DNAEVIDVNGKLIAPGLVDVHVHLREPG----- 66 (428)
T ss_dssp CEEEEEEEEEECSS--S-CEEEEEEEEESSBEEECCSSCCC------TTSEEEECTTCEEEECEEEEEECCCTTT-----
T ss_pred CcEEEEeeEEEeCC--C-CeeeeeEEEECCEEEEecCCCCC------CCCeEEECCCCEEeeCEEEEeeccCCCC-----
Confidence 47999999999732 2 45678999999999999985431 3678999999999999999999984310
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----C---HHHHHHHHHHhCCeEEeeccc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----H---VSEMAKAVELLGLRACLVQST 170 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~---~~~~~~~~~~~g~~~~~~~~~ 170 (466)
....++ .....+.++.+|||++++++.. . .....+.....+...+.....
T Consensus 67 ------------------~~~~~~----~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (428)
T 3mpg_A 67 ------------------GEHKET----IETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGA 124 (428)
T ss_dssp ------------------CTTTCC----HHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEE
T ss_pred ------------------CCchhH----HHHHHHHHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEee
Confidence 001111 1123355789999999997532 1 233444555556544433322
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchh
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 250 (466)
...+. . .... .+..+.. +.+. .. +.....+..+++.+.++++.++++|.++.+|+.+.....
T Consensus 125 ~~~~~--~----~~~l----~~~~~l~----~~G~--~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~ 186 (428)
T 3mpg_A 125 ITVRQ--A----GSEM----TDFETLK----ELGA--FA--FTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLIN 186 (428)
T ss_dssp SBGGG--C----SSSB----CCHHHHH----HTTC--CC--EECTTSCCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCT
T ss_pred EecCC--C----cchH----HHHHHHH----HhCC--EE--EECCCcCCCCHHHHHHHHHHHHhcCCeEEEECCChhHhh
Confidence 21110 0 0000 0111222 1121 11 344556677899999999999999999999997642211
Q ss_pred -------HHHHhhcCCCCc-h------HHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCeEE--ECccchhhc---
Q 012333 251 -------QVVMDTRKVDHG-T------VTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKVS--HCPASAMRM--- 310 (466)
Q Consensus 251 -------~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~~--~~p~~~~~~--- 310 (466)
.........+.. . ...+......+.+..+.|.... +-+.++.+++.|+.+. +||+.....
T Consensus 187 ~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~g~~~~i~H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~ 266 (428)
T 3mpg_A 187 KGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDD 266 (428)
T ss_dssp TCSEETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCCGGG
T ss_pred hHHhhcCccchhhCcCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHhcCCCEEEEEchHHhEECHHH
Confidence 000000000000 0 0111112223444555555421 1244566667776654 566533110
Q ss_pred -----------------cCCccHHHHHHcCCcEEEccCCCCCCCCCCH---H--------HHHHHHHHHhcccccccCCC
Q 012333 311 -----------------LGFAPIKEMLHADICVSLGTDGAPSNNRMSI---V--------DEMYLASLINKGREVFANGT 362 (466)
Q Consensus 311 -----------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~ 362 (466)
....++++++..|+.++++||+.++....+. + .+......... .
T Consensus 267 ~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~p~~~~~k~~~~~~~p~g~~g~e~~~~~~~~~--------~ 338 (428)
T 3mpg_A 267 IPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTN--------L 338 (428)
T ss_dssp CCSSCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBCCCCTTGGGSCTTTSCSCCCCTTTHHHHHHHH--------T
T ss_pred HhCCCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHcccCHhhCCCCceehhhHHHHHHHH--------H
Confidence 0112466778889999999999876422110 0 00011111111 1
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCC-CCCC--CcCCcccceecccC--CCCeeEEEEc
Q 012333 363 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMV--PVHDRITSLVYCMR--TENVVSVMCN 437 (466)
Q Consensus 363 ~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~-~~~~--~~~~~~~~~~~~~~--~~~v~~v~v~ 437 (466)
....++|++++++++|.+||+++|++ +|+|++|++|||||+|.+. |... ...+.....+|... ..+|..||++
T Consensus 339 ~~~~~~~~~~~~~~~t~~~a~~~g~~--~g~i~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~ 416 (428)
T 3mpg_A 339 VKKGIITLEQLIQFLTEKPADTFGLE--AGRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVG 416 (428)
T ss_dssp TTTTSSCHHHHHHTTTHHHHHHHTCS--CSCCCTTSBCCEEEEESSCCEECCGGGCSSSCCCCSCTTCEECCEEEEEEET
T ss_pred HHcCCCCHHHHHHHHhHHHHHHhCCC--CccccCCCcCCEEEEcCCCCEEEchhhccccCCCCCcCCCEEeeEEEEEEEC
Confidence 12235999999999999999999994 8999999999999999883 3221 12222112222221 3579999999
Q ss_pred cEEEEECCeee
Q 012333 438 GQWVMKNKKIL 448 (466)
Q Consensus 438 G~~v~~~g~~~ 448 (466)
|++||++|+++
T Consensus 417 G~~v~~~g~~~ 427 (428)
T 3mpg_A 417 GKIAWQKESAL 427 (428)
T ss_dssp TEEEEECSCC-
T ss_pred CEEEEeCCccc
Confidence 99999999874
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=279.67 Aligned_cols=346 Identities=18% Similarity=0.188 Sum_probs=206.0
Q ss_pred CCCCCCCCCCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh--h-----hhccCCCeEEeCCCcEE
Q 012333 6 SGGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQIL 78 (466)
Q Consensus 6 ~~~~~~~~~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~--~-----~~~~~~~~~iD~~G~~v 78 (466)
++|++...+....+|++|+|++|++.. . +..++|+|+||||++|++..+.. . ....+++++||++|++|
T Consensus 54 ~~~~~~~~~~~~~~dllI~n~~vvd~~---g-~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v 129 (570)
T 4ubp_C 54 MGENGTYTRTENVLDLLLTNALILDYT---G-IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIV 129 (570)
T ss_dssp TTBCSSCCTTTTBCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEE
T ss_pred cCcCCCCCcccCCCCEEEECeEEECCC---C-cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEE
Confidence 444433322344689999999999632 2 36789999999999999864320 0 00123678999999999
Q ss_pred eecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---------
Q 012333 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------- 149 (466)
Q Consensus 79 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--------- 149 (466)
+|||||+|+|+.. +.. ...++.+||||+++.+...
T Consensus 130 ~PG~ID~HvH~~~----------------------------Pg~--------~~aAl~gGvTTvv~gg~~p~~~~n~~p~ 173 (570)
T 4ubp_C 130 TAGGIDTHVHFIN----------------------------PDQ--------VDVALANGITTLFGGGTGPAEGSKATTV 173 (570)
T ss_dssp EECEEEEEEECCC----------------------------TTH--------HHHHHHTTEEEEEEECCSSCHHHHHSSC
T ss_pred eeCEEEcccCCCC----------------------------cch--------HHHHHhcCCeEEEecCccccccCCCcCC
Confidence 9999999999821 111 1458899999999633210
Q ss_pred ------HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHH
Q 012333 150 ------VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 223 (466)
Q Consensus 150 ------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 223 (466)
...+.++.....++..+... +.. . ...+..+. .+.+...++. ...+..+++
T Consensus 174 ~~~~~~l~~~l~aa~~~~v~~~~~g~------~~~------~---~l~el~el----~~aGa~gfK~----~~~~~~~~~ 230 (570)
T 4ubp_C 174 TPGPWNIEKMLKSTEGLPINVGILGK------GHG------S---SIAPIMEQ----IDAGAAGLKI----HEDWGATPA 230 (570)
T ss_dssp CCHHHHHHHHHHHHTTCSSEEEEEEE------CCC------S---SHHHHHHH----HHHTCCEEEE----EGGGCCCHH
T ss_pred CCcHHHHHHHHHHhhhCCeeEEEEec------cCC------c---CHHHHHHH----HHcCCCeEee----ccCCCCCHH
Confidence 11122222222333222110 000 1 11222222 2223233333 233456889
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCee---EEEeecC-ChhhHHHHHhcCCe
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL---SAHTVWV-NHTEIGLLSRAGVK 299 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~H~~~~-~~~~~~~~~~~g~~ 299 (466)
.+.++++.+++++.++.+|+.+...... ..+.+..+. +.... +.|+... .++.++++.+.++.
T Consensus 231 ~L~~aL~~A~~~g~~V~iHae~l~e~g~-----------Vedalea~~--Gr~ih~~HiEgag~~hapd~i~~~~~~~vl 297 (570)
T 4ubp_C 231 SIDRSLTVADEADVQVAIHSDTLNEAGF-----------LEDTLRAIN--GRVIHSFHVEGAGGGHAPDIMAMAGHPNVL 297 (570)
T ss_dssp HHHHHHHHHHHHTCEEEEECCTTCSSCC-----------HHHHHHHHT--TCCEEETTTTSTTSSSTTTGGGGGGSTTEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCcchhhH-----------HHHHHHHhC--CCceeEEEecccccccChHHHHHhccCCcc
Confidence 9999999999999999999985322110 111222211 11111 1111111 24555555555554
Q ss_pred EEE-Cccc---h------------------------------hhccCCccHHHHHHcCCcEEEccCCCCCCCCCCHH-HH
Q 012333 300 VSH-CPAS---A------------------------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIV-DE 344 (466)
Q Consensus 300 ~~~-~p~~---~------------------------------~~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~-~~ 344 (466)
... +|.. . .+....++++.+++.|+.+++|||++..+...... ..
T Consensus 298 ps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~~~~~ 377 (570)
T 4ubp_C 298 PSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRT 377 (570)
T ss_dssp EBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHH
T ss_pred ccccCCCCCcccchhHHhhhheeeecccCccccchhHHHHhhhhhhccccccchhhcCCEEEEECcccccCCcCcccCcH
Confidence 432 2220 0 01123457788999999999999998644222222 22
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceec
Q 012333 345 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 424 (466)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 424 (466)
...+......+..........+.++++++|+++|.|||+++|+++++|+|++||.|||||||.+.+.
T Consensus 378 ~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~~------------- 444 (570)
T 4ubp_C 378 WQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFG------------- 444 (570)
T ss_dssp HHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGTT-------------
T ss_pred HHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECccccc-------------
Confidence 2222211111111111112346799999999999999999999988999999999999999988332
Q ss_pred ccCCCCeeEEEEccEEEEEC
Q 012333 425 CMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 425 ~~~~~~v~~v~v~G~~v~~~ 444 (466)
.++..||++|++||+.
T Consensus 445 ----~~v~~t~~~G~~v~~~ 460 (570)
T 4ubp_C 445 ----VKADRVIKGGIIAYAQ 460 (570)
T ss_dssp ----TSCSEEEETTEEEEEE
T ss_pred ----CCeeEEEECCEEEEec
Confidence 4789999999999974
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=278.98 Aligned_cols=388 Identities=21% Similarity=0.188 Sum_probs=208.9
Q ss_pred CCCCCCCCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeeccccccc
Q 012333 8 GGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87 (466)
Q Consensus 8 ~~~~~~~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~ 87 (466)
-++-+++...+++++|+|++|+++++ ....+++|+|+||+|++|++... + .+.++||++|++|+|||||+|+
T Consensus 10 ~~~~~~~~~~~~~~~i~~~~v~~~~~--~~~~~~~v~i~~g~I~~i~~~~~-----~-~~~~~iD~~g~~v~PG~iD~H~ 81 (496)
T 1rk6_A 10 HGSMSQPDATPFDYILSGGTVIDGTN--APGRLADVGVRGDRIAAVGDLSA-----S-SARRRIDVAGKVVSPGFIDSHT 81 (496)
T ss_dssp ----------CBSEEEESSEECCSSS--CCCEECEEEEETTEEEEEECCTT-----S-CBSCEEECTTCEEEECEEESSC
T ss_pred cccccCCCCCcccEEEECCEEEeCCC--CceeccEEEEECCEEEEecCCCC-----C-CCCeEEeCCCCEEecCEeeeee
Confidence 35556666666789999999996543 34567899999999999987531 1 3567999999999999999999
Q ss_pred CCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc----c---------------
Q 012333 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG----Q--------------- 148 (466)
Q Consensus 88 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~----~--------------- 148 (466)
|+.....+. .....++.+||||+++++. .
T Consensus 82 H~~~~~~~~--------------------------------~~~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~ 129 (496)
T 1rk6_A 82 HDDNYLLKH--------------------------------RDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLD 129 (496)
T ss_dssp CCTTHHHHC--------------------------------TTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGC
T ss_pred cCCcccccc--------------------------------HHHHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccC
Confidence 995432211 0123467889999887531 0
Q ss_pred --------CHHHHHHHHHHhCC--eEE--eecccccC-CCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeec
Q 012333 149 --------HVSEMAKAVELLGL--RAC--LVQSTMDC-GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIR 215 (466)
Q Consensus 149 --------~~~~~~~~~~~~g~--~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 215 (466)
......+.....+. ... .+...... ..+... .......+.+.+..+++..+.+...+.......
T Consensus 130 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~ 206 (496)
T 1rk6_A 130 EGGSFRFARFSDYLEALRAAPPAVNAACMVGHSTLRAAVMPDLR---REATADEIQAMQALADDALASGAIGISTGAFYP 206 (496)
T ss_dssp SSSCCEESSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSCCS---SCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSG
T ss_pred cccccCccCHHHHHHHHhccCCccceEEecccccceeeeccccc---cCCCHHHHHHHHHHHHHHHHcCCcEEeeccccC
Confidence 01112222222121 111 11110000 000000 011222334444555444333322222111111
Q ss_pred ccccCCHHHHHHHHHHHHHcCCccceeccCCcc-hhHH------HHhhcCCC----Cc----------h---HHHHhhhc
Q 012333 216 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPY-ENQV------VMDTRKVD----HG----------T---VTFLDKIE 271 (466)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~------~~~~~~~~----~~----------~---~~~~~~~~ 271 (466)
.....+.+++.++++.+++++.++.+|+..... .... .....+.. +. . .+.+...+
T Consensus 207 ~~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~~~~~~l~~~~~~a~~~g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~ 286 (496)
T 1rk6_A 207 PAAHASTEEIIEVCRPLITHGGVYATHMRDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAM 286 (496)
T ss_dssp GGTTCCHHHHHHHHTHHHHHTCEEEEECSCSSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCeEEEEEEeccCCcchhhHHHHHHHHHHHH
Confidence 112345667777777788888888888853211 0000 00000100 00 0 11222211
Q ss_pred cCCCCe------eEEEeecCChhhHHHHHhcC-CeEEECccchhhc-----------cCCccHH---HHHHcCC------
Q 012333 272 FLQNNL------LSAHTVWVNHTEIGLLSRAG-VKVSHCPASAMRM-----------LGFAPIK---EMLHADI------ 324 (466)
Q Consensus 272 ~~~~~~------~~~H~~~~~~~~~~~~~~~g-~~~~~~p~~~~~~-----------~~~~~~~---~~~~~gi------ 324 (466)
..+ +. ...|+.+++ ++++++.+ +.+.+||. +... .+..++. ++++.|+
T Consensus 287 ~~g-~v~~~~~~~~~~~~~~~---~~~l~~~~~~~v~~~p~-~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~ 361 (496)
T 1rk6_A 287 ASQ-DVSLDAYPYVAGSTMLK---QDRVLLAGRTLITWCKP-YPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMD 361 (496)
T ss_dssp HHS-CEEEEECSCSCEEEECC---CCTTTTSSCEEEEEESS-CGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCC
T ss_pred HcC-CeEEEEeccCCCCCccc---HHHhcCccceEEeccCC-CcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCC
Confidence 111 11 122343333 23333342 55666663 2111 3344444 3556676
Q ss_pred -----------cEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 325 -----------CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 325 -----------~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
++++|||+.+.+....+...........+. ......+|++++++++|.|||++||++ ++|+
T Consensus 362 ~~~v~~~~~~~~~~iGTD~~~~~~~~~~~~~~~~~~~l~~~-------v~~~~~l~~~~~l~~~T~~~A~~lgl~-~~G~ 433 (496)
T 1rk6_A 362 EPDVQRILAFGPTMIGSDGLPHDERPHPRLWGTFPRVLGHY-------SRDLGLFPLETAVWKMTGLTAAKFGLA-ERGQ 433 (496)
T ss_dssp HHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHHHHHHHCCC-------CCCTCSSCHHHHHHTTTHHHHHHHTCT-TCSS
T ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCchhhccHHHHHHHH-------HhhcCCCCHHHHHHHHHHHHHHHhCCC-CCCC
Confidence 689999997654221122221122222211 011234999999999999999999995 4899
Q ss_pred cccCCccCEEEEcCCCCCCCCc-CCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHH
Q 012333 394 LEAGKKADMVVVDPFSWPMVPV-HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 457 (466)
Q Consensus 394 i~~G~~ADlvv~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 457 (466)
|++|++|||||||.+.....+. .++.. ...+|..||++|++|+++|++++.+.|++++
T Consensus 434 i~~G~~ADlv~~d~~~~~~~~~~~~~~~------~~~~v~~v~v~G~~v~~~g~~~~~~~g~~l~ 492 (496)
T 1rk6_A 434 VQPGYYADLVVFDPATVADSATFEHPTE------RAAGIHSVYVNGAAVWEDQSFTGQHAGRVLN 492 (496)
T ss_dssp CCTTSBCCEEEECTTTCBCCCCSSSTTC------CCBSEEEEEETTEEEEETTEECSCCCCCBCC
T ss_pred cCCCCcccEEEEcCcccccccccccccc------cCCCceEEEECCEEEEECCeeccCCCceEee
Confidence 9999999999999985432221 12221 2357999999999999999999998888764
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=276.11 Aligned_cols=373 Identities=16% Similarity=0.126 Sum_probs=222.0
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
.+++|++|+|++|++++ +.....++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+....++
T Consensus 4 ~~~~~~~i~~~~v~~~~--~~~~~~~~v~i~~g~I~~i~~~~~------~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~ 75 (480)
T 3gip_A 4 AEKLDFKITGGWIIDGT--GAPRRRADLGVRDGRIAAIGELGA------HPARHAWDASGKIVAPGFIDVHGHDDLMFVE 75 (480)
T ss_dssp -CCEEEEEESSEECCSS--SCCCEECEEEEETTEEEEEECCTT------SCEEEEEECTTSEEEECEEESSCCCTTHHHH
T ss_pred cccCCEEEECcEEECCC--CCeeeeeEEEEECCEEEEecCCCC------CCCCeEEECCCCEEccCEEeccccccccccC
Confidence 35689999999999654 334567899999999999998532 1366899999999999999999998543222
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeee---------cCc-----------------cC
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE---------AGG-----------------QH 149 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~---------~~~-----------------~~ 149 (466)
. . .....+.+||||+++ ++. ..
T Consensus 76 ~-------------------~-------------~~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~ 123 (480)
T 3gip_A 76 K-------------------P-------------DLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFAD 123 (480)
T ss_dssp S-------------------T-------------TCHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSS
T ss_pred C-------------------h-------------hHHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccC
Confidence 1 0 011248999999997 211 11
Q ss_pred HHHHHHHHHHhC--CeEEeeccc-----ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCH
Q 012333 150 VSEMAKAVELLG--LRACLVQST-----MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATD 222 (466)
Q Consensus 150 ~~~~~~~~~~~g--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 222 (466)
.....+.....+ +........ ...+ . .......+.+.+..+.+++..+.+...++....+......+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g--~---~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p~~~~~~ 198 (480)
T 3gip_A 124 VPAYFAALDAQRPMINVAALVGHANLRLAAMR--D---PQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQA 198 (480)
T ss_dssp HHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCS--S---TTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTTGGGCCH
T ss_pred HHHHHHHHHhCCCCceEEEccccHHHHHHhcC--C---cCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCCcccCCH
Confidence 333344444332 322221100 0001 0 011123445556666666555555455554433332334578
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC-------h---hhHHH
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-------H---TEIGL 292 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-------~---~~~~~ 292 (466)
+++.++++.++++|.++.+|+.+....... ...+.+......+.+..+.|..... . +.++.
T Consensus 199 ~el~~~~~~a~~~g~~v~~H~~~~~~~~~~---------a~~e~i~la~~~g~~v~i~H~s~~~~~~~~~~~~~l~~i~~ 269 (480)
T 3gip_A 199 AELEGLARVAAERRRLHTSHIRNEADGVEA---------AVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDR 269 (480)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCSSTTHHH---------HHHHHHHHHHHHCCEEEETTCCCCSGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEecCccccHHH---------HHHHHHHHHHHhCCCEEEEEEeccCccchhhHHHHHHHHHH
Confidence 888888899999999999999653221100 0112222222333444455554211 3 34555
Q ss_pred HHhcCCeE--EECccchhhc------------------------cC-----------CccHH------------------
Q 012333 293 LSRAGVKV--SHCPASAMRM------------------------LG-----------FAPIK------------------ 317 (466)
Q Consensus 293 ~~~~g~~~--~~~p~~~~~~------------------------~~-----------~~~~~------------------ 317 (466)
+++.|+.+ .++|+..... .+ ..+..
T Consensus 270 a~~~G~~Vt~e~~p~~~~~t~~~l~~~~~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~ 349 (480)
T 3gip_A 270 AREQGVEVALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDED 349 (480)
T ss_dssp HHHTTCCEEEEECSCSCEEEECCGGGTTTSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHH
T ss_pred HHHcCCceEEEeeccccCcchhhhcCHHHHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHH
Confidence 66666554 4566543210 00 11111
Q ss_pred --HHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCC-CCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 318 --EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD-PAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 318 --~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
..+..+...++|||+.+......+...-.......+ +.. ...+|++++++++|.+||+++|+++ +|+|
T Consensus 350 ~~~~~~~~~~~~~gsD~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~t~~~a~~~g~~~-~G~l 420 (480)
T 3gip_A 350 EVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGR--------YVREARLMTLEQAVARMTALPARVFGFAE-RGVL 420 (480)
T ss_dssp HHHHHHHSTTEEECCCCCTTCSSCCTHHHHHHHHHHHC--------CCCCTCSSCHHHHHHHHTHHHHHHHTCTT-CSSC
T ss_pred HHHHHHcCCCeEEecCCcccCCCCChhhhhhHHHHHHH--------HhhhcCCCCHHHHHHHHHHHHHHHcCCCC-CCcc
Confidence 112334556788998765432211111111122221 112 2459999999999999999999954 6999
Q ss_pred ccCCccCEEEEcCCCCCCC-CcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHH
Q 012333 395 EAGKKADMVVVDPFSWPMV-PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQL 458 (466)
Q Consensus 395 ~~G~~ADlvv~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 458 (466)
++|++|||||||++..... .+.++.. ...+|..||++|++||++|++++ ..|+++++
T Consensus 421 ~~G~~AD~vv~d~~~~~~~~~~~~~~~------~~~~v~~v~v~G~~v~~~g~~~~-~~G~~lr~ 478 (480)
T 3gip_A 421 QPGAWADVVVFDPDTVADRATWDEPTL------ASVGIAGVLVNGAEVFPQPPADG-RPGQVLRA 478 (480)
T ss_dssp STTSBCCEEEECTTTCBCCCCSSSTTC------CCBSEEEEEETTEEEESSCCSSS-CCCCBCCC
T ss_pred CCCCCCCEEEEcCccccCccccccccc------cCCCccEEEECCEEEEECCeEcC-CCCcCcCC
Confidence 9999999999999953211 1222211 13579999999999999999998 88887653
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=281.28 Aligned_cols=363 Identities=16% Similarity=0.183 Sum_probs=212.1
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcC--CchhhhhhccCCCeEEeCCCcEEeecccccccCCccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ--SADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~--~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~ 94 (466)
+++|++|+|++|+++++ . .+++|+|+||+|++|++ ..+ ..+.++||++|++|+|||||+|+|+....
T Consensus 4 ~~~~~~i~~~~v~~~~~--~--~~~~v~i~~g~I~~i~~~~~~~------~~~~~~id~~g~~v~PG~ID~H~H~~~~~- 72 (448)
T 3hm7_A 4 KRFDLIIRSSTVVTETT--T--YRADVAIRNGIVSAITEPGSIS------SDDGPAIDGTGLHLFPGMVDVHVHFNEPG- 72 (448)
T ss_dssp -CCSEEEEEEEEECSSC--E--EEEEEEEETTEEEEEESTTCSC------TTSSCEEECTTCEEEECEEEEEECCCTTT-
T ss_pred CcccEEEEeeEEECCCC--c--eEeEEEEECCEEEEeeCccCCC------CCCCeEEECCCCEEecCEEEeeeccCCCC-
Confidence 45789999999997543 2 67899999999999998 322 13678999999999999999999985311
Q ss_pred ccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC-c-----cCHHHHHH---HHHHh-CCeE
Q 012333 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-G-----QHVSEMAK---AVELL-GLRA 164 (466)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~-----~~~~~~~~---~~~~~-g~~~ 164 (466)
....+.+ ....+.++.+|||++++++ . .....+.. ..... .+..
T Consensus 73 -----------------------~~~~~~~---~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (448)
T 3hm7_A 73 -----------------------RTEWEGF---ASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDY 126 (448)
T ss_dssp -----------------------SGGGCCS---HHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEE
T ss_pred -----------------------CCcHhHH---HHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEE
Confidence 0000000 1123557899999999987 2 22233222 22222 2233
Q ss_pred EeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccc---ccCCHHHHHHHHHHHHHcCCccce
Q 012333 165 CLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETRDMAREFKTGIHM 241 (466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~l~~~~~~a~~~~~~v~~ 241 (466)
...... .+. . ..+..+.. +.+...++.++..... ...+.+.+.++++.++++|.++.+
T Consensus 127 ~~~~~~-------~~~----~----~~~l~~l~----~~g~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~a~~~g~~v~v 187 (448)
T 3hm7_A 127 RFWGGL-------VPG----N----IDHLQDLH----DGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAV 187 (448)
T ss_dssp EEEEEC-------CTT----C----GGGHHHHH----HTTCSEEEEESSSCSSSSSCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEe-------ccc----C----HHHHHHHH----HcCCCEEEEeeccccCCccCcCCHHHHHHHHHHHHhcCCEEEE
Confidence 222111 110 0 11112222 2233344443333221 345788999999999999999999
Q ss_pred eccCCcchhHHHHhhc--C----------CCC-----chHHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EE
Q 012333 242 HVAEIPYENQVVMDTR--K----------VDH-----GTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VS 301 (466)
Q Consensus 242 H~~~~~~~~~~~~~~~--~----------~~~-----~~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~ 301 (466)
|+.+............ + ... .....+...+..+.+..+.|...- +-+.++.+++.|.. +.
T Consensus 188 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e 267 (448)
T 3hm7_A 188 HAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIKQAKGEGVNVSVE 267 (448)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEECCCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHhcCCCEEEE
Confidence 9976432211000000 0 000 011122222223444555554321 12445666666654 55
Q ss_pred ECccchhhc--------------------cCCccHHHHHHcCCcEEEccCCCCCCCCCCH----HH--------HHHHHH
Q 012333 302 HCPASAMRM--------------------LGFAPIKEMLHADICVSLGTDGAPSNNRMSI----VD--------EMYLAS 349 (466)
Q Consensus 302 ~~p~~~~~~--------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~----~~--------~~~~~~ 349 (466)
+||...... ....++++++..|+.++++||+.|.....+. .. +.....
T Consensus 268 ~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~i~tD~~p~~~~~k~~~~~~~~~~G~~g~e~~l~~ 347 (448)
T 3hm7_A 268 TCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMKTGKTIFEVWGGIAGCQNTLAV 347 (448)
T ss_dssp ECHHHHHCCHHHHHHHCSTTCCSSCCCCHHHHHHHHHHHHHTCCCEECCCBCCCCGGGGCCSSTTTSCCCBCCTTTHHHH
T ss_pred echHHHccCHHHhcCCCCeEEEcCCCCCHHHHHHHHHHHhcCCccEEEeCCCCCCHHHcccCCHhhCCCCCccHHHHHHH
Confidence 777533210 0123466778889999999998876421110 00 011112
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC-------cCCcccc
Q 012333 350 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP-------VHDRITS 421 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~-------~~~~~~~ 421 (466)
+... .....++|++++++++|.|||+++|+++++|+|++|++|||||+|.+ +|...+ ..+|+..
T Consensus 348 ~~~~--------~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~sp~~g 419 (448)
T 3hm7_A 348 MLTE--------GYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASDLYYRHPISPYVG 419 (448)
T ss_dssp HHHH--------TTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCSTTSBCCEEEEEEEEEEECCGGGCCSSSCCCTTTT
T ss_pred HHHH--------HHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccCCCcCCEEEEeCCCCEEEChHhcccccCCCCCCC
Confidence 1211 11234699999999999999999999888999999999999999987 332211 1122221
Q ss_pred eecccCCCCeeEEEEccEEEEECCe
Q 012333 422 LVYCMRTENVVSVMCNGQWVMKNKK 446 (466)
Q Consensus 422 ~~~~~~~~~v~~v~v~G~~v~~~g~ 446 (466)
..+ ..+|..||++|++||++++
T Consensus 420 ~~~---~g~v~~t~~~G~~v~~~~~ 441 (448)
T 3hm7_A 420 QRF---RGKVKHTICQGKHVYQDHE 441 (448)
T ss_dssp CEE---EEEEEEEEETTEEEEECC-
T ss_pred CEE---EEEEEEEEECCEEEEECCC
Confidence 111 2489999999999999976
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=270.33 Aligned_cols=347 Identities=18% Similarity=0.196 Sum_probs=213.1
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCC-CcEEeecccccccCCccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ-SQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~-G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
.++++|+|++|++++ . .+.+++|+|+||+|++|++.... . ++.++||++ |++|+|||||+|+|+....
T Consensus 2 ~~~~li~~~~v~~~~--~-~~~~~~v~I~~g~I~~ig~~~~~----~-~~~~viD~~~g~~v~PGlID~H~H~~~~~--- 70 (396)
T 2vhl_A 2 AESLLIKDIAIVTEN--E-VIKNGYVGINDGKISTVSTERPK----E-PYSKEIQAPADSVLLPGMIDIHIHGGYGA--- 70 (396)
T ss_dssp -CCEEEEEEEEECSS--C-EEEEEEEEEETTEEEEEESSCCS----S-CCSEEEECCTTCEEEECEEEEEECEETTE---
T ss_pred CccEEEEeeEEEcCC--c-cccCceEEEECCEEEEEECCCCC----C-CCCceEcCCCCCEEcCCEEEEeecCCcCc---
Confidence 457999999999754 2 45678999999999999832110 0 245899999 9999999999999985421
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-CHHH-------HHHHHHH-h----CCe
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSE-------MAKAVEL-L----GLR 163 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-~~~~-------~~~~~~~-~----g~~ 163 (466)
++ ...++++. .....+++++||||+++++.. .... ..+.... . |..
T Consensus 71 -----~~------------~~~~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~ 129 (396)
T 2vhl_A 71 -----DT------------MDASFSTL----DIMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAE 129 (396)
T ss_dssp -----EG------------GGCSHHHH----HHHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSSSE
T ss_pred -----cc------------cCCCHHHH----HHHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccccc
Confidence 00 01122222 235677999999999998643 2221 1222222 2 321
Q ss_pred EEe---ecccccC-CCCCC-cccccCChHHHHHHHHHHHHHhccCCCCCeEEE-EeecccccCCHHHHHHHHHHHHHcCC
Q 012333 164 ACL---VQSTMDC-GEGLP-ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIW-FGIRQIMNATDRLLLETRDMAREFKT 237 (466)
Q Consensus 164 ~~~---~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~l~~~~~~a~~~~~ 237 (466)
... ....... ..|.. ....... ..+.++++.+.+.+.++.. +.++... +.++++.++++|+
T Consensus 130 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~ik~~~~~p~~~~------~~~~~~~a~~~g~ 196 (396)
T 2vhl_A 130 LLGIHLEGPFVSPKRAGAQPKEWIRPS-------DVELFKKWQQEAGGLIKIVTLAPEEDQ------HFELIRHLKDESI 196 (396)
T ss_dssp EEEEEEECSSSCGGGCTTSCGGGCCCC-------CHHHHHHHHHHTTTCEEEEEECGGGSG------GGHHHHHHHHTTC
T ss_pred eEEEeeecCccCccccCCCCHHHccCC-------CHHHHHHHHHhcCCcceEEEECCCCCC------HHHHHHHHHHCCC
Confidence 211 1111100 00100 0000111 1222333333334556643 3332221 1256788899999
Q ss_pred ccce-eccCCcchhHHHHhhcCCCCchHHHH---------hhhccC-----CCCe---eEEEeecCChhhHHHHHhc-CC
Q 012333 238 GIHM-HVAEIPYENQVVMDTRKVDHGTVTFL---------DKIEFL-----QNNL---LSAHTVWVNHTEIGLLSRA-GV 298 (466)
Q Consensus 238 ~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-----~~~~---~~~H~~~~~~~~~~~~~~~-g~ 298 (466)
++++ |+.+........... +.. .+..+ ...+.+ ..+. ++.|+.+++++.++.+.+. +.
T Consensus 197 ~v~~gH~~~~~~~~~~a~~~-G~~--~i~H~~~~~~~~~~~~~G~~~~~~~~~~~~~e~~~h~~~l~~~~~~~~~~~~~~ 273 (396)
T 2vhl_A 197 IASMGHTDADSALLSDAAKA-GAS--HMTHLYNAMSPFHHREPGVIGTALAHDGFVTELIADGIHSHPLAAKLAFLAKGS 273 (396)
T ss_dssp EEEECSBCCCHHHHHHHHHT-TCC--EESSTTSSBCCCCSSSCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHHHHHCT
T ss_pred EEeecccCCCHHHHHHHHHc-CCC--EeEeCCccCcccccCCCCchhhhhcCCCcEEEEcCCccccCHHHHHHHHhhcCC
Confidence 9998 998765544443331 110 00000 000000 0122 6789999999999988877 65
Q ss_pred -eEEECccchhhccCC-------ccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 299 -KVSHCPASAMRMLGF-------APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 299 -~~~~~p~~~~~~~~~-------~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
.+..+|.+... .+. .++..+.+.| .+.+ +|....+...+++..++.+... . ++|+
T Consensus 274 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~g-~~~~-~d~~~~g~~~~l~~~l~~~~~~--~------------~~~~ 336 (396)
T 2vhl_A 274 SKLILITDSMRA-KGLKDGVYEFGGQSVTVRGR-TALL-SDGTLAGSILKMNEGARHMREF--T------------NCSW 336 (396)
T ss_dssp TSEEEECCBCTT-TTSCSEEEEETTEEEEEETT-EEEC-TTSCBCSBCCCHHHHHHHHHHH--H------------CCCH
T ss_pred ccEEEECcChhh-cCCCCceEEECCeEEEEECC-EEEe-CCCcccccccCHHHHHHHHHHh--c------------CCCH
Confidence 47777765421 111 1233455677 6666 7765554556788888765421 1 3999
Q ss_pred HHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeee
Q 012333 371 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 449 (466)
+++++++|.|||++||+++++|+|++|++|||||+|.+ .+|..||++|++||+++++..
T Consensus 337 ~~~l~~aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~~~~~~~~ 395 (396)
T 2vhl_A 337 TDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD--------------------CEVILTICRGNIAFISKEADQ 395 (396)
T ss_dssp HHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTT--------------------CCEEEEEETTEEEEECSCCC-
T ss_pred HHHHHHHHHHHHHHhCCcCCCceeCCCCcCCEEEECCC--------------------CcEEEEEECCEEEEecccccc
Confidence 99999999999999999877999999999999999998 589999999999999998753
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=263.47 Aligned_cols=355 Identities=14% Similarity=0.134 Sum_probs=210.6
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++ + ....+++|+|+||+|++|++..+. ..+.++||++|++|+|||||+|+|+.....
T Consensus 2 ~~i~~~~v~~-~---~~~~~~~v~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~------ 66 (424)
T 3gri_A 2 KLIKNGKVLQ-N---GELQQADILIDGKVIKQIAPAIEP-----SNGVDIIDAKGHFVSPGFVDVHVHLREPGG------ 66 (424)
T ss_dssp EEEESCEEEE-T---TEEEECEEEEETTEEEEEESCCCC-----CSSCEEEECTTCEEEECEEEEEECCCTTTC------
T ss_pred EEEEeeEEEc-C---CCceeeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEEeCeEEeeecCCCCCC------
Confidence 7899999997 2 255778999999999999986431 136789999999999999999999843110
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------CHHHHHHHHHHhCCeEEeeccccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQSTMD 172 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~ 172 (466)
...++ + ....+.++.+|||++++++.. ......+.....+...+.......
T Consensus 67 -----------------~~~~~-~---~~~~~~~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (424)
T 3gri_A 67 -----------------EYKET-I---ETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASIT 125 (424)
T ss_dssp -----------------TTTCC-H---HHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESB
T ss_pred -----------------CCHHH-H---HHHHHHHHhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEe
Confidence 01111 1 123355789999999998642 123344455556664332222211
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcch---
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE--- 249 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~--- 249 (466)
.+ ... ... .+ +.++.+.+ .+. +..+..+..+++.+.++++.++++|.++++|+.+....
T Consensus 126 ~~--~~~----~~l----~~----l~~l~~~G--~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~ 187 (424)
T 3gri_A 126 TR--QLG----KEL----VD----FPALVKEG--AFA--FTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGG 187 (424)
T ss_dssp GG--GCS----SSB----CC----HHHHHTTT--CCC--EEECSSCCCSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTC
T ss_pred cC--CCc----chH----HH----HHHHHhcC--cEE--EecCCcCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhh
Confidence 11 000 000 01 11222222 122 34556677889999999999999999999999764321
Q ss_pred ----hHHHHhhcCCCCc-hHH------HHhhhccCCCCeeEEEeecCC-hhhHHHHHhcCCe--EEECccchhhc-----
Q 012333 250 ----NQVVMDTRKVDHG-TVT------FLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVK--VSHCPASAMRM----- 310 (466)
Q Consensus 250 ----~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~g~~--~~~~p~~~~~~----- 310 (466)
..........+.. ..+ .+......+.+..+.|..... -+.++.+++.|+. +.+||+.....
T Consensus 188 ~~~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~g~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~ 267 (424)
T 3gri_A 188 AMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIP 267 (424)
T ss_dssp CEESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCC
T ss_pred hhhcCccchhhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHh
Confidence 1111111000000 011 111222233445555553211 1345556666655 56777643210
Q ss_pred ------cC---------CccHHHHHHcCCcEEEccCCCCCCC---------------CCCHHHHHHHHHHHhcccccccC
Q 012333 311 ------LG---------FAPIKEMLHADICVSLGTDGAPSNN---------------RMSIVDEMYLASLINKGREVFAN 360 (466)
Q Consensus 311 ------~~---------~~~~~~~~~~gi~~~~gsD~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 360 (466)
.. ...+++++..|+.++++|||.|+.. .......+.....+
T Consensus 268 ~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~--------- 338 (424)
T 3gri_A 268 GNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFV--------- 338 (424)
T ss_dssp SSCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCCCHHHHTSCTTTSCCCCCCTTTHHHHHHHHHT---------
T ss_pred CcCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhHCCCCCccccccHHHHHHHHH---------
Confidence 01 1245567888999999999977631 01111111111111
Q ss_pred CCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC--c-----CCcccceecccCCCCee
Q 012333 361 GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP--V-----HDRITSLVYCMRTENVV 432 (466)
Q Consensus 361 ~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~--~-----~~~~~~~~~~~~~~~v~ 432 (466)
...++|++++++++|.+||+++|+ ++|+|++|++|||||||.+ +|...+ . .+|+.... ...+|.
T Consensus 339 ---~~~~~~~~~~~~~~t~~~a~~~g~--~~g~l~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~sp~~g~~---~~g~v~ 410 (424)
T 3gri_A 339 ---KNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYK---VYGNPI 410 (424)
T ss_dssp ---TTSSCCHHHHHHHHTHHHHHHTTC--SCSCCCTTSBCCEEEEESSCCEECCGGGCSSSCCCCTTTTCE---ESCEEE
T ss_pred ---HcCCCCHHHHHHHHhHHHHHHhCC--CCCcccCCCcCCEEEEcCCCCEEEchhhcccccCCCCcCCCE---EeeeEE
Confidence 223599999999999999999999 4799999999999999998 333221 1 11222111 135899
Q ss_pred EEEEccEEEEECCe
Q 012333 433 SVMCNGQWVMKNKK 446 (466)
Q Consensus 433 ~v~v~G~~v~~~g~ 446 (466)
.||++|++||++|+
T Consensus 411 ~t~~~G~~v~~~g~ 424 (424)
T 3gri_A 411 LTMVEGEVKFEGDK 424 (424)
T ss_dssp EEEETTEEEEEC--
T ss_pred EEEECCEEEEeCCC
Confidence 99999999999985
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=277.22 Aligned_cols=376 Identities=16% Similarity=0.157 Sum_probs=216.6
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
+++++|+|++|++.+. ..+++|+|+||+|++|++.... + .+.++||++|++|+|||||+|+|+.....
T Consensus 7 ~~~~lI~n~~vv~~~~----~~~~~V~I~dG~I~~Ig~~~~~----~-~~~~vIDa~G~~v~PGlID~H~H~~~~~~--- 74 (521)
T 2ftw_A 7 TGTILIKNGTVVNDDR----YFKSDVLVENGIIKEISKNIEP----K-EGIKVVDATDKLLLPGGIDTHTHFQLPFM--- 74 (521)
T ss_dssp CCCEEEESCEEECSSC----EEECEEEEETTEEEEEESCCCC----C-SSCCEEECTTCEEEECEEEEEECTTCEET---
T ss_pred cCCEEEECcEEECCCC----ceeeeEEEECCEEEEecCCCCC----C-CCCeEEECCCCEEecCEEeeecccCcCCC---
Confidence 4689999999996432 3468999999999999975321 1 25689999999999999999999954210
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc----cCHHHHHHHHHHhC-CeEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLG-LRACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~----~~~~~~~~~~~~~g-~~~~~~~~~~~ 172 (466)
...+.++.+. ..+.++++|||++++++. .......+...... ...........
T Consensus 75 ------------------~~~~~e~~~~----~~~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~ 132 (521)
T 2ftw_A 75 ------------------GTVSVDDFDI----GTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHV 132 (521)
T ss_dssp ------------------TEECSSCHHH----HHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred ------------------CccCHHHHHH----HHHHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeEE
Confidence 0011122211 235578899999998642 22222222221110 00100001110
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHH
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 252 (466)
.. + . .......+..+++++ .+...++.+..++.....+++++.++++.|++++.++++|+.+.......
T Consensus 133 ~~---~-~----~~~~~~~~l~~l~~~---~G~~~~k~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~ 201 (521)
T 2ftw_A 133 AI---T-W----WSEQVSREMEILVKE---RGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEG 201 (521)
T ss_dssp EC---C-S----CCHHHHHHHHHHHHH---SCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred ee---c-C----CChhHHHHHHHHHHh---CCCCEEEEEeccCCCcCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 00 0 0 112223333333322 34456666666666667899999999999999999999999643211111
Q ss_pred --HHhhcCCCCc---------hHHHH------hhhccCCCCeeEEEeecCCh----hhHHHHHhcCCeEEE--Cccchh-
Q 012333 253 --VMDTRKVDHG---------TVTFL------DKIEFLQNNLLSAHTVWVNH----TEIGLLSRAGVKVSH--CPASAM- 308 (466)
Q Consensus 253 --~~~~~~~~~~---------~~~~~------~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~g~~~~~--~p~~~~- 308 (466)
.....|.... ..+.. ......+.+. |..+++. +.++.+++.|+.+.. +|....
T Consensus 202 ~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~---hi~h~ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~ 278 (521)
T 2ftw_A 202 QKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPV---YIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGV 278 (521)
T ss_dssp HHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCE---EECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHC
T ss_pred HHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCE---EEEecCcHHHHHHHHHHHHcCCeEEEEEcchhhcc
Confidence 1111111110 01111 1111122233 4444443 346677788887542 111110
Q ss_pred ----------h----ccCCcc----------HHHHHHcCCcEEEccCCCCCCCCCCHHHHH------------------H
Q 012333 309 ----------R----MLGFAP----------IKEMLHADICVSLGTDGAPSNNRMSIVDEM------------------Y 346 (466)
Q Consensus 309 ----------~----~~~~~~----------~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~------------------~ 346 (466)
. ....+| +++++..|...+++||+.++. +.... +
T Consensus 279 d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~~~~~----~~~k~~~~~~~~~~p~G~~G~e~~ 354 (521)
T 2ftw_A 279 DGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFC----ADQKAMGKDDFTKIPNGVNGVEDR 354 (521)
T ss_dssp CGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCC----HHHHGGGTTCGGGSCCCBCCTTTH
T ss_pred CHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCCCCCC----HHHhhcccCChhhCCCCCccHHHH
Confidence 0 001122 344788999999999987652 11000 0
Q ss_pred HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCC-CCCCC-------cCCc
Q 012333 347 LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMVP-------VHDR 418 (466)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~-~~~~~-------~~~~ 418 (466)
+...... .....++|++++++++|.|||+++|+++++|+|++|++|||||||++. ++..+ ..+|
T Consensus 355 l~~~~~~--------~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv~d~~~~~~i~~~~~~~~~~~~p 426 (521)
T 2ftw_A 355 MSIVWEN--------GVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNI 426 (521)
T ss_dssp HHHHHHH--------HTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCT
T ss_pred HHHHHHH--------HHhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEEEeCCCCEEEChHHccccCCCCC
Confidence 0000000 012235999999999999999999998889999999999999999983 21111 1222
Q ss_pred ccceecccCCCCeeEEEEccEEEEECCeee-eccHHHHH
Q 012333 419 ITSLVYCMRTENVVSVMCNGQWVMKNKKIL-LLMRGRLF 456 (466)
Q Consensus 419 ~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~~~~~ 456 (466)
+..+.. ...|..||++|++||++|++. ....|+++
T Consensus 427 ~~g~~~---~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 462 (521)
T 2ftw_A 427 FEGIKV---TGIAVTTIVAGNIVWSDNKLSCVKGSGRFV 462 (521)
T ss_dssp TTTCEE---EEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred cCCCEe---eeeEEEEEECCEEEEECCeecccCcCceEe
Confidence 222211 246899999999999999987 34445554
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=266.65 Aligned_cols=355 Identities=19% Similarity=0.194 Sum_probs=198.4
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
.+|+|++|+++.. +.++++++|+|+||||++|++..+. ..+++++||++|++|+|||||+|+|+......+....
T Consensus 4 ~aI~narviD~~~-g~~i~~~~V~I~dG~I~~Ig~~~~~----~~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 78 (403)
T 3mtw_A 4 KAVSAARLLDVAS-GKYVDNPLVIVTDGRITSIGKKGDA----VPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNS 78 (403)
T ss_dssp EEEEEEEEEETTT-TEEEESEEEEEETTEEEEEEETTCC----CCTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGG
T ss_pred EEEEceEEEECCC-CcEecCcEEEEECCEEEEEeCCCCC----CCCCCEEEECCCCEEEeChheeeeCCccccccCcccc
Confidence 6899999997543 5678999999999999999986542 1247799999999999999999999865432221111
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHH-hC----CeEEeecccc--cC
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL-LG----LRACLVQSTM--DC 173 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~--~~ 173 (466)
...................+..++++..+.+............. .. .......... ..
T Consensus 79 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
T 3mtw_A 79 ---------------LEYSDRFWSVVQTANAKKTLEAGFTTVRNVGAADYDDVGLREAIDAGYVPGPRIVTAAISFGATG 143 (403)
T ss_dssp ---------------GGSCHHHHHHHHHHHHHHHHHTTEEEEEECCCSTTHHHHHHHHHHTTSSCCCEEEECCSCEESTT
T ss_pred ---------------ccccHHHHhhhhhhhhhhccccccceeeccccccccchhhhhhhhcccccccccccccccccccc
Confidence 01111111222223445567889999888765443332222111 11 1111100000 00
Q ss_pred CCC----CCcccc--cCChHHHHHHHHHHHHHhccCCCCCeEEEE--------eecccccCCHHHHHHHHHHHHHcCCcc
Q 012333 174 GEG----LPASWA--VRTTDDCIQSQKELYAKHHHAADGRIRIWF--------GIRQIMNATDRLLLETRDMAREFKTGI 239 (466)
Q Consensus 174 ~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~l~~~~~~a~~~~~~v 239 (466)
... ...... .........+...........+........ ..........+.+.++++.++..+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (403)
T 3mtw_A 144 GHCDSTFFPPSMDQKNPFNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKV 223 (403)
T ss_dssp STTSCCSSCGGGCCCCTTCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccccccccccchhHHHhhhhHhhhhhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeE
Confidence 000 000000 000000111112222222222212121111 112233456788999999999999999
Q ss_pred ceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECcc--------------
Q 012333 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA-------------- 305 (466)
Q Consensus 240 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~-------------- 305 (466)
.+|.............. . ....+......................+.
T Consensus 224 ~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (403)
T 3mtw_A 224 AAHAHGASGIREAVRAG------------------V-DTIEHASLVDDEGIKLAVQKGAYFSMDIYNTDYTQAEGKKNGV 284 (403)
T ss_dssp EEEECSHHHHHHHHHTT------------------C-SEEEECTTCCHHHHHHHHHHTCEEECCCSTHHHHHHHHHHHTC
T ss_pred EEEeccchhHHHHHHhc------------------c-cccccccccccchhhhhccccceeeeeeccchhhhhhhhcccc
Confidence 99986543222111110 0 01112222222222222222222221111
Q ss_pred -------chhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 012333 306 -------SAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377 (466)
Q Consensus 306 -------~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 377 (466)
..... ....+.+.+.+.|+.+.+|||++... ...++..+... .. .++|++++|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gt~~~~~~-~~~~~~~~~~~--~~-------------~gls~~eal~~~ 348 (403)
T 3mtw_A 285 LEDNLRKDRDIGELQRENFRKALKAGVKMVYGTDAGIYP-HGDNAKQFAVM--VR-------------YGATPLQAIQSA 348 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCBTTBC-TTCGGGHHHHH--HH-------------TTCCHHHHHHHT
T ss_pred chhhccccccccccccchhhHHHhcCCeEeeccCCcccc-cchHHHHHHHH--HH-------------cCCCHHHHHHHH
Confidence 11110 22345677889999999999987543 22444444332 11 259999999999
Q ss_pred hHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 378 T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
|.|||+++|+++++|+|++||+|||||||.| |++++ ..+ .+|..||++||+|.
T Consensus 349 T~npA~~lgl~~~~GsI~~G~~ADlvvld~d-----Pl~di-~~~------~~v~~Vi~~G~vvk 401 (403)
T 3mtw_A 349 TLTAAEALGRSKDVGQVAVGRYGDMIAVAGD-----PLADV-TTL------EKPVFVMKGGAVVK 401 (403)
T ss_dssp THHHHHHHTCTTTSSSCCTTSBCCEEEESSC-----TTTCG-GGG------GSCSEEEETTEEEE
T ss_pred HHHHHHHhCCCCCceeeCCCCcceEEEECCC-----hhHhH-hhh------cCcCEEEECCEEEe
Confidence 9999999999988999999999999999999 55542 211 47999999999764
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=274.05 Aligned_cols=382 Identities=16% Similarity=0.161 Sum_probs=214.5
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~ 97 (466)
+++++|+|++|++.+. ..+++|+|+||+|++|++..+.+... ..+.++||++|++|+|||||+|+|+......
T Consensus 26 ~~~~lI~ng~Vv~~~~----~~~~dV~I~dGrI~~Ig~~~~~~~~~-~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~-- 98 (541)
T 2vr2_A 26 PSRLLIRGGRVVNDDF----SEVADVLVEDGVVRALGHDLLPPGGA-PAGLRVLDAAGKLVLPGGIDTHTHMQFPFMG-- 98 (541)
T ss_dssp -CEEEEESCEEECSSC----EEECEEEEETTEEEEEEC------------CEEEECTTSEEEECEEEEEECTTCBCSS--
T ss_pred cCCEEEECcEEEcCCC----ceEeeEEEECCEEEEeccCCCCCccc-ccCceEEECCCCEEccCEEEecccCCCCCCC--
Confidence 4789999999997432 24679999999999999754321100 0123799999999999999999998542110
Q ss_pred cCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCC-eEEeeccccc
Q 012333 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGL-RACLVQSTMD 172 (466)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~-~~~~~~~~~~ 172 (466)
....++.+ ...+.++++||||++++... ......+....... ..........
T Consensus 99 -------------------~~~~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~ 155 (541)
T 2vr2_A 99 -------------------SRSIDDFH----QGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVCCDYSLHV 155 (541)
T ss_dssp -------------------SBCSCCTT----HHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred -------------------CcCHHHHH----HHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCceEEEeeee
Confidence 00111111 12245789999999986422 22222222222110 0000000000
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHH
Q 012333 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 252 (466)
.. + ........+..++++ ..+...++.+..++..+.++++++.++++.+++++.++++|+.+.......
T Consensus 156 ~~----~----~~~~~~~~el~~l~~---~~G~~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~ 224 (541)
T 2vr2_A 156 AV----T----WWSDQVKEEMKILVQ---DKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEG 224 (541)
T ss_dssp EE----C----SCSHHHHHHHHHHHH---TSCCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred cc----c----CCCHHHHHHHHHHHH---hCCCCEEEEEeccCCccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 00 0 011223333333332 234556777666666677899999999999999999999999543211111
Q ss_pred --HHhhcCCCCc---------hHHHHh------hhccCCCCeeEEEeec-CChhhHHHHHhcCCeEEECccchhhc----
Q 012333 253 --VMDTRKVDHG---------TVTFLD------KIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVSHCPASAMRM---- 310 (466)
Q Consensus 253 --~~~~~~~~~~---------~~~~~~------~~~~~~~~~~~~H~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~---- 310 (466)
.....+.... ..+... .....+....+.|... ...+.++.+++.|..+.. +.....+
T Consensus 225 ~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~~~~h~ss~~~~~~i~~ar~~G~~v~~-e~~~~~L~~d~ 303 (541)
T 2vr2_A 225 AKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYG-EPIAASLGTDG 303 (541)
T ss_dssp HHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHTTCCEEE-EEBHHHHHCCS
T ss_pred HHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCeEEE-EeehhhhcCCH
Confidence 1111121110 011110 1112223344444421 112334556778876532 2211100
Q ss_pred --------------cCCcc----------HHHHHHcCCcEEEccCCCCCCCCCCHHHH------------------HHHH
Q 012333 311 --------------LGFAP----------IKEMLHADICVSLGTDGAPSNNRMSIVDE------------------MYLA 348 (466)
Q Consensus 311 --------------~~~~~----------~~~~~~~gi~~~~gsD~~~~~~~~~~~~~------------------~~~~ 348 (466)
...+| +++++..|+..+++||+.++. +... .++.
T Consensus 304 ~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~gtD~~~~~----~~~k~~~~~~~~~~p~G~~G~e~~l~ 379 (541)
T 2vr2_A 304 THYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFN----TCQKALGKDDFTKIPNGVNGVEDRMS 379 (541)
T ss_dssp GGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCCBCCBCCCC----HHHHGGGSSCGGGSCCCBCCTTTHHH
T ss_pred HHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEEEeCCCCCC----hHHhcccCCChhhCCCCCccHHHHHH
Confidence 01122 455789999999999997653 1110 0111
Q ss_pred HHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC--------CcCCccc
Q 012333 349 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV--------PVHDRIT 420 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~--------~~~~~~~ 420 (466)
...... ....++|++++++++|.|||+++|+++++|+|++|++|||||||.+..... ...+|+.
T Consensus 380 ~~~~~~--------v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~p~~ 451 (541)
T 2vr2_A 380 VIWEKG--------VHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHHQAVNFNIFE 451 (541)
T ss_dssp HHHHHH--------TTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTTTCSSSCSCCTTT
T ss_pred HHHHHH--------HHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCEEEEcCCcCeEeCHHHhhcccCCCccC
Confidence 111100 122359999999999999999999987899999999999999998732111 1123333
Q ss_pred ceecccCCCCeeEEEEccEEEEECCeeee-ccHHHHH
Q 012333 421 SLVYCMRTENVVSVMCNGQWVMKNKKILL-LMRGRLF 456 (466)
Q Consensus 421 ~~~~~~~~~~v~~v~v~G~~v~~~g~~~~-~~~~~~~ 456 (466)
.+.+. .+|..||++|++||++|+++. ...|+++
T Consensus 452 g~~~~---g~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 485 (541)
T 2vr2_A 452 GMVCH---GVPLVTISRGKVVYEAGVFSVTAGDGKFI 485 (541)
T ss_dssp TCEEE---EEEEEEEETTEEEEETTEECCCTTCSCBC
T ss_pred CCEEe---eeEEEEEECCEEEEECCeeccCCCCceEe
Confidence 33222 368999999999999999874 3445444
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=286.19 Aligned_cols=347 Identities=16% Similarity=0.173 Sum_probs=188.1
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh-------hhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~-------~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
+..|++|+|++|++.+ + +.++||.|+||||++||+...+. ....++++++||++|++|+|||||+|+|+
T Consensus 335 ~~~DLVItNA~IVD~t--G--i~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl 410 (840)
T 4gy7_A 335 ISLDTVITNAVIIDYT--G--IIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHY 410 (840)
T ss_dssp GSCSEEEEEEEEEETT--E--EEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEEC
T ss_pred ccCCEEEeCeEEECCC--C--eEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCC
Confidence 3579999999999643 2 35789999999999999753210 11122478999999999999999999998
Q ss_pred cccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCH------------HHHHHHH
Q 012333 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV------------SEMAKAV 157 (466)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~------------~~~~~~~ 157 (466)
.. + .. ....+.+|+||+.+.+.... .......
T Consensus 411 ~~----------------------------P-~~-------~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l 454 (840)
T 4gy7_A 411 IC----------------------------P-QL-------VYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLML 454 (840)
T ss_dssp CC----------------------------T-HH-------HHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHH
T ss_pred CC----------------------------C-Cc-------hHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHH
Confidence 32 1 11 12356789999987653211 1111111
Q ss_pred HH---hCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHH
Q 012333 158 EL---LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 234 (466)
Q Consensus 158 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~ 234 (466)
.. ..++..... .+. ....+. ..+. ...+...++ ....+..+++.+.++++.+++
T Consensus 455 ~a~~~~~vn~g~~~----~~~--------~~~~~~---L~el----~~aGa~g~K----~~~~~~~t~~~i~~aL~~A~e 511 (840)
T 4gy7_A 455 QSTDDLPLNFGFTG----KGS--------SSKPDE---LHEI----IKAGAMGLK----LHEDWGSTPAAIDNCLTIAEH 511 (840)
T ss_dssp HHTTTSSSEEEEEE----ECC--------CSSSHH---HHHH----HHHTCSEEE----EETTTCCCHHHHHHHHHHHHH
T ss_pred hhhhcceeEEEEeC----CCC--------cccHHH---HHHh----hhceeeEEE----eccccCCCHHHHHHHHHHHHH
Confidence 11 112211110 000 011111 1122 222222233 233445678889999999999
Q ss_pred cCCccceeccCCcchh---HHHHhhcCCC-C-------chHHHHhhhccCCCCeeEEEeecCC--------hhhHHHHHh
Q 012333 235 FKTGIHMHVAEIPYEN---QVVMDTRKVD-H-------GTVTFLDKIEFLQNNLLSAHTVWVN--------HTEIGLLSR 295 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~~---~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~H~~~~~--------~~~~~~~~~ 295 (466)
++..+.+|........ .......+.. + .................+.+..... .+.+.....
T Consensus 512 ~g~~V~ih~e~~~~~~~vee~laA~~g~~~h~~~~e~~~~~~A~dii~~~~~a~~l~~~t~~~~~~~~~~~~e~l~~~~~ 591 (840)
T 4gy7_A 512 HDIQINIHTDTLNEAGFVEHSIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMV 591 (840)
T ss_dssp HTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHH
T ss_pred hCCEEEEeccCcchhHHHHHHHHhhcCCcccceeccccccccchHHHHHhhcccceeeEeeccchhhhhhhhhhheeEEe
Confidence 9999999986532211 1111110000 0 0000000111111111111111111 011111110
Q ss_pred cCCeEEECccchh----hc--cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHH-HHHHHHHhcccccccCCCCCCCCC
Q 012333 296 AGVKVSHCPASAM----RM--LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDE-MYLASLINKGREVFANGTTDPAAL 368 (466)
Q Consensus 296 ~g~~~~~~p~~~~----~~--~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 368 (466)
....-...+.... +. ........+.+.|+..+++||+.+.......... ...+..................++
T Consensus 592 ~~~l~~~i~ed~~~~~s~~~~~~~a~~~ll~dlGvi~~isSD~~p~~~~~e~~~~~~~~a~~~~~~~g~~~~e~~~~~~L 671 (840)
T 4gy7_A 592 CHHLDREIPEDLAFAHSRIRKKTIAAEDVLNDIGAISIISSDSQAMGRVGEVISRTWQTADKMKAQTGPLKCDSSDNDNF 671 (840)
T ss_dssp HTTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEECCBTTTBCGGGHHHHHHHHHHHHHHHHCSCTTSCSSCCHH
T ss_pred eeccCccchhhhhhccCcCCccchhHHHHHHhCCCeEEEeccccccccccccchhhhcccccchhhcccchhhhhhcCCC
Confidence 0000000000000 00 1112334466789999999999876543322221 222221211122222222334569
Q ss_pred CHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 369 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 369 s~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
+++++|+++|.|||++||+++++|+|++||+|||||||+..| ..++..|+++|++||-
T Consensus 672 sl~eAIr~aTiNPAraLGLddr~GSIEpGK~ADLVLfDPa~F-----------------GvKPe~Vik~G~Iv~~ 729 (840)
T 4gy7_A 672 RIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFF-----------------GTKPEMVIKGGMVAWA 729 (840)
T ss_dssp HHHHHHHTTTHHHHHHHTCTTTSSSSCTTSBCCEEEECGGGT-----------------TTCCSEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCccccCCCCcceEEEECchHc-----------------CCCCeEEEECCEEEEc
Confidence 999999999999999999999999999999999999998733 2589999999999985
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-31 Score=263.74 Aligned_cols=331 Identities=21% Similarity=0.242 Sum_probs=201.2
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccc
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~ 95 (466)
.+++|++|+|++|+++.. ..+..++|+|++|+|++|++... ..++.++||++|++|+|||||+|+|+...
T Consensus 32 ~~~~dlli~n~~ivd~~~--~~~~~~dI~I~~G~I~~Vg~~~~-----~~~~~~vID~~G~~v~PG~ID~H~Hl~~~--- 101 (608)
T 3nqb_A 32 DQRFDVLITGGTLVDVVT--GELRPADIGIVGALIASVHEPAS-----RRDAAQVIDAGGAYVSPGLIDTHMHIESS--- 101 (608)
T ss_dssp SSCEEEEEESCEEECTTT--CCEEECEEEEETTEEEEEECTTS-----CCCEEEEEECTTSEEEECEEEEEECGGGG---
T ss_pred CCCCCEEEECeEEEECCC--CeEEeeEEEEECCEEEEecCCCC-----CCCCCeEEeCCCCEEecCeEecccCcccc---
Confidence 456899999999996542 33456799999999999998542 11366899999999999999999999421
Q ss_pred cccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------CHHHHHHHHHHhCCeEEee
Q 012333 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLV 167 (466)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~~~~~ 167 (466)
..+ .+. ..+.++.+|||++++++.. ......+.....+.+.+..
T Consensus 102 ---------------------~~~-~~~------~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~ 153 (608)
T 3nqb_A 102 ---------------------MIT-PAA------YAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILL 153 (608)
T ss_dssp ---------------------TSC-HHH------HHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEE
T ss_pred ---------------------cCC-HHH------HHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEe
Confidence 111 121 2355789999999975422 1122233333455666554
Q ss_pred cc-cccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 168 QS-TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
.. ....+.++...... ...++..+.++ ..+-..++.+...... ...++.+.+.++.|++.+.++.+|+.+.
T Consensus 154 ~p~~~P~~~~~~~~g~~----~~~~el~~l~~---~~~v~glgE~~~~~~v-~~~d~~l~~~l~~A~~~g~pV~~Ha~~~ 225 (608)
T 3nqb_A 154 APSCVPSAPGLERGGAD----FDAAILADLLS---WPEIGGIAEIMNMRGV-IERDPRMSGIVQAGLAAEKLVCGHARGL 225 (608)
T ss_dssp ECCCSSSSTTSCCCSCC----CCHHHHHHHHT---STTEEEEEEECCHHHH-HTTCHHHHHHHHHHHHHTCEEEECCTTC
T ss_pred ccccCCCCCccccCccc----CCHHHHHHHHh---ccCcceeeEeeccCCc-CCCcHHHHHHHHHHHHcCCEEEEcCCCC
Confidence 32 11110111110000 01122222221 1111111111111111 2345678888999999999999998753
Q ss_pred cchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhccCCccHHHHHH----c
Q 012333 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLH----A 322 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~----~ 322 (466)
... ....+...+ ....|+....++.++.+ +.|..+.+. .+... ....+..+++ .
T Consensus 226 ~~~-------------~L~~~~~aG-----v~~~H~~~~~eea~e~l-~~G~~i~i~-gs~~~--~~~~l~~~i~~~~~~ 283 (608)
T 3nqb_A 226 KNA-------------DLNAFMAAG-----VSSDHELVSGEDLMAKL-RAGLTIELR-GSHDH--LLPEFVAALNTLGHL 283 (608)
T ss_dssp CHH-------------HHHHHHHTT-----CCEECCCCSHHHHHHHH-HTTCEEEEE-SSSGG--GHHHHHHHHHHHTSC
T ss_pred CHH-------------HHHHHHHcC-----CCeeeccCCHHHHHHHH-HCCCEEEEe-ccccc--cHHHHHHHHHhHhhc
Confidence 221 111112211 22468777655555555 578888765 22211 1122333333 7
Q ss_pred CCcEEEccCCCCCCC---CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCc
Q 012333 323 DICVSLGTDGAPSNN---RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKK 399 (466)
Q Consensus 323 gi~~~~gsD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ 399 (466)
|++++++||+..... ...+...++... . .+++++++++++|.|||+++|+ +++|+|++|++
T Consensus 284 g~~v~lgTD~~~p~~~~~~g~l~~~v~~~~--~-------------~Gls~~eal~~aT~n~A~~lgl-~~~G~i~~G~~ 347 (608)
T 3nqb_A 284 PQTVTLCTDDVFPDDLLQGGGLDDVVRRLV--R-------------YGLKPEWALRAATLNAAQRLGR-SDLGLIAAGRR 347 (608)
T ss_dssp CTTEEEECBSCCHHHHHHTCSHHHHHHHHH--H-------------TTCCHHHHHHHHTHHHHHHHTC-TTSSCCSTTSB
T ss_pred CceEEEecCCCCCcchhhhcchHHHHHHHH--H-------------cCCCHHHHHHHHHHHHHHHcCC-CCCcCcCCCCC
Confidence 999999999742110 011222222221 1 1499999999999999999999 46899999999
Q ss_pred cCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeee
Q 012333 400 ADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448 (466)
Q Consensus 400 ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 448 (466)
||||++|.- ...+|..||++|++|+++|+++
T Consensus 348 ADlvv~d~l------------------~~~~v~~v~~~G~~v~~~g~~~ 378 (608)
T 3nqb_A 348 ADIVVFEDL------------------NGFSARHVLASGRAVAEGGRML 378 (608)
T ss_dssp CCEEEESCT------------------TTCCEEEEEETTEEEEETTEEC
T ss_pred ccEEEECCC------------------CCCcceEEEECCEEEEECCeEe
Confidence 999999962 1248999999999999999876
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=253.27 Aligned_cols=360 Identities=18% Similarity=0.230 Sum_probs=190.8
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 96 (466)
+|.+++|+|++|+|+++ ..++++++|+|+||||++|++.... .+++++||++|++|+|||||+|+|+.......
T Consensus 2 sM~~lli~ng~i~d~~~-~~~~~~~dV~I~~G~I~~Ig~~~~~-----~~~~~vID~~G~~v~PGfID~H~H~~~~~~~~ 75 (426)
T 3mkv_A 2 SLTTFLFRNGALLDPDH-PDLLQGFEILIEDGFIREVSDKPIK-----SSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNL 75 (426)
T ss_dssp -CCEEEEEEEEECCTTS-SSCEEEEEEEEETTEEEEEESSCCC-----CSSCEEEECTTCEEEECEEEEEECTTCCSSCH
T ss_pred CcCcEEEECeEEEeCCC-CcEecCcEEEEECCEEEEecCCCCC-----CCCCEEEECCCCEEEeChhhhhhCcccccCCc
Confidence 36799999999997654 4567888999999999999986442 24779999999999999999999985422111
Q ss_pred ccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHH---hCCeEEeecccccC
Q 012333 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL---LGLRACLVQSTMDC 173 (466)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~ 173 (466)
. ........................++|+....+...... ...... .+............
T Consensus 76 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (426)
T 3mkv_A 76 P----------------RVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPF-KQAVESGLVEGPRLFVSGRALSQ 138 (426)
T ss_dssp H----------------HHTTSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCHHH-HHHHHTTSSCCCEEEECCSEEEC
T ss_pred c----------------cccccchhHHHHHHHhhhhhhhcccccccccccccchhh-hhHhhccceeeceeccccccccc
Confidence 0 011122222233333344556677777776665443222 111111 11111111000000
Q ss_pred --CCC--------CCcc----c-----ccCChHHHHHHHHHHHHHhccCCCCCeEEEEee--------cccccCCHHHHH
Q 012333 174 --GEG--------LPAS----W-----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI--------RQIMNATDRLLL 226 (466)
Q Consensus 174 --~~~--------~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~l~ 226 (466)
+.. .... . .................+....+.......... ......+.....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (426)
T 3mkv_A 139 TGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIR 218 (426)
T ss_dssp TTSTTCCCCCSSBCCCSSSCSSBCCTTCSEEECCSHHHHHHHHHHHHHHTCSSEEEECBCCSSCSSCCTTSBCSCHHHHH
T ss_pred cccccchhhhhhccccccccchhhhhccccccccCHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHH
Confidence 000 0000 0 000000011112222222211111222111111 112233455555
Q ss_pred HHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccc
Q 012333 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 306 (466)
Q Consensus 227 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~ 306 (466)
..+..+.........+.......... ... ......+...............+.....++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (426)
T 3mkv_A 219 AIVAEAQGRGTYVLAHAYTPAAIARA---------------VRC----GVRTIEHGNLIDDETARLVAEHGAYVVPTLVT 279 (426)
T ss_dssp HHHHHHHTTTCCEEEEECSHHHHHHH---------------HHT----TCCEEEECTTCCHHHHHHHHHHTCEEECCHHH
T ss_pred HHHHHHHhcccceeehhhhhhhHHHH---------------Hhh----ccccccccccccchhhhhhhhcCccccccccc
Confidence 55665665555555444321111100 000 00112223333333444444445444444332
Q ss_pred hh----------------------hccCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCC
Q 012333 307 AM----------------------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 364 (466)
Q Consensus 307 ~~----------------------~~~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
.. ......+...+.+.|+.+.+++|..+..... ....+. .+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~d~~~~~~~~-~~~~~~---~~~------------ 343 (426)
T 3mkv_A 280 YDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRL-QSDEFR---ILA------------ 343 (426)
T ss_dssp HHHHHHHTTTTTCCHHHHTTHHHHHTTHHHHHHHHHHHTCCBCCCCCCCGGGGGG-TTHHHH---HHH------------
T ss_pred hhhhhhhhhhccccccccccccccccccchhhHHhhhcCceeeeccCCcccccch-HHHHHH---HHH------------
Confidence 11 0022345667888999999999987542111 111111 111
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 365 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 365 ~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
.++|++|+|+++|.|||+++|+++++|+|++||+|||||||.| |++|.. . +.....+|+.||++||+|..
T Consensus 344 -~gls~~eal~~~T~~pA~~lgl~~~~Gsi~~G~~ADlvvlD~d-----Pl~di~-~--~~~~~~~v~~Vi~~G~vv~~ 413 (426)
T 3mkv_A 344 -EVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGN-----PLKSVD-C--LLGQGEHIPLVMKDGRLFVN 413 (426)
T ss_dssp -TTSCHHHHHHHTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSC-----TTTCST-T--TCSSSTTCCEEEETTEEEEE
T ss_pred -hCCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCcceEEEECCC-----hHHhHH-H--HhCCCCCccEEEECCEEEEC
Confidence 1499999999999999999999988999999999999999999 444421 1 11234689999999997654
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=249.28 Aligned_cols=344 Identities=16% Similarity=0.143 Sum_probs=198.4
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCC
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 100 (466)
++|+|++|++++ ....+++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|.....
T Consensus 5 ~~i~n~~i~~~~---~~~~~~~i~I~dG~I~~i~~~~~~----~-~~~~viD~~G~~v~PGfID~HvHg~~G~------- 69 (381)
T 3iv8_A 5 YALTNCKIYTGN---DVLVKHAVIINGDKIEAVCPIESL----P-SEMNVVDLNGANLSPGFIDLQLNGCGGV------- 69 (381)
T ss_dssp EEEEEEEEECSS---CEESSEEEEEETTEEEEEEEGGGS----C-TTCEEEEEEEEEEEECEEEEEECEETTE-------
T ss_pred EEEEccEEEcCC---CeEeccEEEEECCEEEEEeCCCCC----C-CCCeEEECCCCEEccCeEeeeecccCCC-------
Confidence 589999999743 345678999999999999875432 1 3668999999999999999999974210
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCc-cCHHHHHH-------HHHHhCCeEEeeccccc
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QHVSEMAK-------AVELLGLRACLVQSTMD 172 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~-~~~~~~~~-------~~~~~g~~~~~~~~~~~ 172 (466)
+ +... ...+ ......+.++++|||+++.... .....+.+ .....+.. ...+..
T Consensus 70 -~-----------~~d~-~~~e---~l~~~~~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~~~~~~~~~---ilGiHl 130 (381)
T 3iv8_A 70 -M-----------FNDE-ITAE---TIDTMHKANLKSGCTSFLPTLITSSDENMRQAIAAAREYQAKYPNQ---SLGLHL 130 (381)
T ss_dssp -E-----------TTTS-CSHH---HHHHHHHHHHHTTEEEEEEEEESCCHHHHHHHHHHHHHHHHHCSSS---BCCEEE
T ss_pred -C-----------CCCC-CCHH---HHHHHHHHHHhCCccccccccCCCCHHHHHHHHHHHHHHHhcCCCc---eeEeec
Confidence 0 0000 1112 2223446688999999988532 12222211 11121111 122233
Q ss_pred CCCCCCcccccCChHHHHH-HHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhH
Q 012333 173 CGEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 251 (466)
+|+.+++..........+. ...+.++++.+.. ..++...-.+... . .+.++.+++.|+.+++......++..
T Consensus 131 EGPfis~~~~Ga~~~~~i~~p~~~~~~~~~~~~-~~i~~vTlAPE~~--~----~~~i~~l~~~gi~vs~GHs~A~~e~~ 203 (381)
T 3iv8_A 131 EGPYLNVMKKGIHSVDFIRPSDDTMIDTICANS-DVIAKVTLAPENN--K----PEHIEKLVKAGIVVSIGHTNATYSEA 203 (381)
T ss_dssp ECSSCCGGGCTTSCTTTCCCCCHHHHHHHHHTT-TSEEEEEECCTTS--C----HHHHHHHHHTTCEEEECSBCCCHHHH
T ss_pred cCcccCHhhcCCCCHHHcCCCCHHHHHHHHhcc-CCeEEEEECCCCC--c----HHHHHHHHHCCCEEEecCCCCCHHHH
Confidence 4554444333222211110 1112233333333 2466543333322 2 34566677888888875444443332
Q ss_pred HHHhhcCCCCchHHHHhhhccCCCC----------------eeEEEeecCChhhHHHHHhc-CCeEEECccchhhccCCc
Q 012333 252 VVMDTRKVDHGTVTFLDKIEFLQNN----------------LLSAHTVWVNHTEIGLLSRA-GVKVSHCPASAMRMLGFA 314 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~H~~~~~~~~~~~~~~~-g~~~~~~p~~~~~~~~~~ 314 (466)
...-..|.. ...+.++.+..+..| .+|.++.|++++.++.+.+. +-.+. .-+..|+..+++
T Consensus 204 ~~a~~~Ga~-~~THlfNaM~~~~hR~PG~vga~l~~~~~~~elI~DG~Hv~p~~~~~~~~~~g~~~~-lvTDam~a~G~~ 281 (381)
T 3iv8_A 204 RKSFESGIT-FATHLFNAMTPMVGREPGVVGAIYDTPEVYAGIIADGFHVDYANIRIAHKIKGEKLV-LVTDATAPAGAE 281 (381)
T ss_dssp HHHHHTTCC-EESSTTSSBCCCBTTBCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHHHHHGGGEE-EECCBCTTTTSC
T ss_pred HHHHHcCCC-EeeeCCCCCCCccCCCCchHHHHhcCCCcEEEEEcCCccCCHHHHHHHHHhcCCEEE-EEeCcccccCCC
Confidence 221111111 111222222222111 27889999999998886553 21221 112333333322
Q ss_pred cHHHH-------HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 315 PIKEM-------LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 315 ~~~~~-------~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
+-... .+.|. +.-.|....++..+++..++..... .++|++++++++|.|||+++|+
T Consensus 282 dg~y~lgg~~v~v~~g~--~~l~~g~lAGs~l~l~~~v~~~v~~--------------~g~~~~~al~~aT~~pA~~lg~ 345 (381)
T 3iv8_A 282 MDYFIFVGKKVYYRDGK--CVDENGTLGGSALTMIEAVQNTVEH--------------VGIALDEALRMATLYPAKAIGV 345 (381)
T ss_dssp CSEEESSSCEEEEETTE--EECTTCCBCSBCCCHHHHHHHHHHT--------------TCCCHHHHHHHHTHHHHHHHTC
T ss_pred CCeeecCCeEEEEECCE--EEcCCCCccChhhhHHHHHHHHHHh--------------hCCCHHHHHHHHHHHHHHHhCC
Confidence 11111 12221 2224555555677899998876421 2499999999999999999999
Q ss_pred CCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 388 DNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 388 ~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
++++|+|++|++||||++|.+ .+|..||++|++||.
T Consensus 346 ~~~~G~i~~G~~ADlvvld~~--------------------~~v~~t~~~G~~v~~ 381 (381)
T 3iv8_A 346 DEKLGRIKKGMIANLTVFDRD--------------------FNVKATVVNGQYEQN 381 (381)
T ss_dssp TTTSSSCCTTSBCCEEEECTT--------------------CCEEEEEETTEEEEC
T ss_pred CCCCceECCCCcCCEEEECCC--------------------CCEEEEEECCEEeeC
Confidence 888899999999999999987 589999999999984
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=247.49 Aligned_cols=339 Identities=18% Similarity=0.205 Sum_probs=197.8
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCccccccccc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~ 98 (466)
.+++|+|++|++++ . ..+++|+|+||+|++|++.... .. ..+.++||++|++|+|||||+|+|+....
T Consensus 8 ~~~~i~n~~v~~~~---~-~~~~~v~i~~g~I~~ig~~~~~--~~-~~~~~viD~~g~~v~PG~iD~H~H~~~~~----- 75 (390)
T 1onw_A 8 GFTLLQGAHLYAPE---D-RGICDVLVANGKIIAVASNIPS--DI-VPNCTVVDLSGQILCPGFIDQHVHLIGGG----- 75 (390)
T ss_dssp CCEEEESCEEESSS---E-EEECEEEEETTEEEEEETTCCT--TS-SSSCEEEECTTCEEEECEEEEEECTTCCB-----
T ss_pred ceEEEECcEEECCC---C-CccceEEEECCEEEEEecCccc--CC-CCCCeEEeCCCCEECcCeeEeeECccccC-----
Confidence 46899999999743 1 3567999999999999875321 11 12568999999999999999999984211
Q ss_pred CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc-----CHH---HHHHHHHHhCCeEEeeccc
Q 012333 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVS---EMAKAVELLGLRACLVQST 170 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~-----~~~---~~~~~~~~~g~~~~~~~~~ 170 (466)
...++. . .+.+. ....++++||||++++... ... ...++....|++.......
T Consensus 76 ~~~~~~-----------~-~~~~~-------~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~ 136 (390)
T 1onw_A 76 GEAGPT-----------T-RTPEV-------ALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGA 136 (390)
T ss_dssp CTTSGG-----------G-BCCCC-------CHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTSEEEEEEEC
T ss_pred cccccc-----------c-cCHHH-------HHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCCceEEeccc
Confidence 000000 0 01110 2355789999999997532 122 3344555677775433222
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCC------ccceecc
Q 012333 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVA 244 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~------~v~~H~~ 244 (466)
+. .+........ ......++++. + .++.+.++.....+.+++.++++.++..+. .+++|..
T Consensus 137 ~~----~~~~~~~~~~----~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~ 203 (390)
T 1onw_A 137 YH----VPSRTITGSV----EKDVAIIDRVI----G-VKCAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMG 203 (390)
T ss_dssp SC----SSCCCSSSCH----HHHHHHCTTEE----E-EEEEESSTTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEEC
T ss_pred cC----CCchhhhhhh----cchhhhHHHhh----c-ceeeecCCCCCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeC
Confidence 11 1111000111 11111111111 1 144455555556788888888877765543 2567774
Q ss_pred CCcchhHHHHhhcCCCCchHHHHhhhccCCCCe-eEEEeecCCh----hhHHHHHhcCCeEEECccchhhccCCccHHHH
Q 012333 245 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL-LSAHTVWVNH----TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEM 319 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~H~~~~~~----~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~ 319 (466)
+........... . ..+...-.. ...|. +.++ +.++.+++.+.....++.... .....+++.+
T Consensus 204 ~~~~~~~~~~~~----------~-~~g~~~v~~l~~~h~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 270 (390)
T 1onw_A 204 DSKKALQPIYDL----------L-ENCDVPISKLLPTHV-NRNVPLFEQALEFARKGGTIDITSSIDEP-VAPAEGIARA 270 (390)
T ss_dssp SCTTTTHHHHHH----------H-HTCCCCGGGEEEECG-GGSHHHHHHHHHHHHTTCCEEEETTCCSS-SCHHHHHHHH
T ss_pred CCHHHHHHHHHH----------H-hccCCceEEeecccc-ccCHHHHHHHHHHHhcCCccccccccCCC-CcCHHHHHHH
Confidence 433222211111 0 111111111 11343 2232 344555555554444442221 1234578889
Q ss_pred HHcCCc---EEEccCCCCCCCC---------------CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 012333 320 LHADIC---VSLGTDGAPSNNR---------------MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 381 (466)
Q Consensus 320 ~~~gi~---~~~gsD~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~ 381 (466)
++.|++ ++++||+.+..+. ..+...++.. +.. .++|++++++++|.||
T Consensus 271 ~~~g~~~d~i~l~TD~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~~t~np 336 (390)
T 1onw_A 271 VQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVL--VKD------------YDFSISDALRPLTSSV 336 (390)
T ss_dssp HHTTCCGGGEEEECCBTCC-------------CCCCSHHHHHHHHHH--HHH------------HCCCHHHHHGGGTHHH
T ss_pred HHcCCCccceEEEccCCCCCcccCCccccccccCCCHHHHHHHHHHH--HHH------------cCCCHHHHHHHHhHHH
Confidence 999984 7999999643210 0122222211 111 1499999999999999
Q ss_pred HHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeee
Q 012333 382 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 449 (466)
Q Consensus 382 A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 449 (466)
|+++|++ ++|+|++|++|||||||.+ ..|..||++|++|+++|+++.
T Consensus 337 A~~~gl~-~~G~i~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~~~g~~~~ 383 (390)
T 1onw_A 337 AGFLNLT-GKGEILPGNDADLLVMTPE--------------------LRIEQVYARGKLMVKDGKACV 383 (390)
T ss_dssp HHHTTCT-TCSSCCTTSBCCEEEECTT--------------------CCEEEEEETTEEEEETTEESS
T ss_pred HHHhCCC-CCcccCCCCcCCEEEEcCC--------------------CcEEEEEECCEEEEECCeEcc
Confidence 9999994 6799999999999999987 268899999999999999874
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.10 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=81.7
Q ss_pred cHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHH-HHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYL-ASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 315 ~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
....+++.|....+++|+.+............. ...................++|++++++++|.|||++|||++++|+
T Consensus 343 ~~~~l~~~G~~~~i~sD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~d~iGS 422 (566)
T 4ep8_C 343 AEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGS 422 (566)
T ss_dssp HHHHHHHHTSSCEECCCTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSS
T ss_pred HHHHHHhCCCcceEeecccccccccccccccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 445677889999999999877654443322211 1111111111222223345799999999999999999999999999
Q ss_pred cccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 394 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 394 i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
|++||+|||||||++.+. .++..|+++|.+||-
T Consensus 423 IevGK~ADLVL~Dp~~f~-----------------vkP~~v~~~G~iv~a 455 (566)
T 4ep8_C 423 IEVGKLADLVVWSPAFFG-----------------VKPATVIKGGMIAIA 455 (566)
T ss_dssp SCTTSBCCEEEECGGGTT-----------------TSCSEEEETTEEEEE
T ss_pred CCCCCCCCEEEECccccC-----------------CCeeEEeeCCEEEEc
Confidence 999999999999998442 589999999999984
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=238.78 Aligned_cols=311 Identities=14% Similarity=0.155 Sum_probs=180.1
Q ss_pred eceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccccccccCCCCchHhhhhccccccCCC
Q 012333 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (466)
Q Consensus 39 ~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (466)
.+++|+|+||+|++|++ . + || +|++|+|||||+|+|+...... .. .
T Consensus 28 ~~~~V~I~~g~I~~vg~-----------~-~-iD-~g~~v~PGlID~H~H~~~~~~~-------------------~~-~ 73 (376)
T 1o12_A 28 FTGDVEIEEGKIVKVEK-----------R-E-CI-PRGVLMPGFVDPHIHGVVGADT-------------------MN-C 73 (376)
T ss_dssp EEEEEEEETTEEEEEEE-----------C-C-SC-CSSEEEECEEEEEECEETTEET-------------------TT-T
T ss_pred cCceEEEECCEEEEeCC-----------C-c-cC-CCCEEccCeEEEeecCCCCCCC-------------------Ch-h
Confidence 46799999999999975 1 4 89 9999999999999998542210 00 0
Q ss_pred ChhHHHHHHHHHHHHHHhcCceeeeecCccC-H-------HHHHHHHHH-hC--CeEEeecc-cccC-CCC-CCcccccC
Q 012333 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQH-V-------SEMAKAVEL-LG--LRACLVQS-TMDC-GEG-LPASWAVR 184 (466)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~-~-------~~~~~~~~~-~g--~~~~~~~~-~~~~-~~~-~~~~~~~~ 184 (466)
+ ......+++++||||+++++... . ..+.++... .| ++...... .... ..+ .++.....
T Consensus 74 ~-------l~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~g~~~~g~~~~~~~~g~~~~~~~~~ 146 (376)
T 1o12_A 74 D-------FSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILENPSTSLLGVHLEGPYISKEKKGAHSEKHIRP 146 (376)
T ss_dssp C-------HHHHHHHHHTTTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCTTCSEEEEEEECSSSCGGGCTTSCTTTCCC
T ss_pred h-------HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhccCCCceEEEEEEcCcCCcccCCCCCHHHhcC
Confidence 0 11235668999999999986432 1 223334444 35 33222111 1100 000 01111110
Q ss_pred ChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccce-eccCCcchhHHHHhh--cCCC-
Q 012333 185 TTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDT--RKVD- 260 (466)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~--~~~~- 260 (466)
. ..+.++++ ......+.+.+..... +++++|+++|+++++ |+.+...+....... ..+.
T Consensus 147 ~-------~~~~~~~~---~~~~~~~~~~pe~~~~-------~~i~~A~~~g~~v~igH~~~~~~~i~~a~~~G~~~itH 209 (376)
T 1o12_A 147 P-------SERELSEI---DSPAKMLTFAPEIESS-------ELLLRLVKRDIVLSAGHSIATFEEFMKFYKEGVKRITH 209 (376)
T ss_dssp C-------CHHHHTTC---CTTEEEEEECTTSTTG-------GGGGGGGGGTCEEEECSBCCCHHHHHHHHTTTCCEESS
T ss_pred C-------CHHHHHHh---hCCeEEEEEccCCccH-------HHHHHHHHCCCEEEeecCccCHHHHHHHHHCCCCeEEe
Confidence 0 02233333 1122222233222111 567889999999999 987654443333221 0000
Q ss_pred ----CchHHHHhhhccC-----CCCe---eEEEeecCChhhHHHHHhc-CCeEEECccchhhc-cCCccHHHHHHcCCcE
Q 012333 261 ----HGTVTFLDKIEFL-----QNNL---LSAHTVWVNHTEIGLLSRA-GVKVSHCPASAMRM-LGFAPIKEMLHADICV 326 (466)
Q Consensus 261 ----~~~~~~~~~~~~~-----~~~~---~~~H~~~~~~~~~~~~~~~-g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~ 326 (466)
..+.+.+ ..+.+ ..+. ++.|+.+++++.++.+.+. +.. .+++.++... .+.++.. +...|.++
T Consensus 210 ~~~~~~~~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~-~~~~~sd~~~~~g~~~g~-~~~~g~~~ 286 (376)
T 1o12_A 210 FPNGLKPLHHR-EIGITGAGLLLDDVKLELICDGVHLSREMVKLVYKVKKAN-GIVLVTDSISAAGLKDGT-TTLGDLVV 286 (376)
T ss_dssp TTTTBCCCCSS-CCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHHHHHTGG-GEEEECCBCTTTTSCSCE-EESSSSEE
T ss_pred cccCcCChhhc-ccchhhhhhcCCcceEEEeCCCcCcCHHHHHHHHhhCCCC-CEEEecCchhhcCCCCee-EEECCeEE
Confidence 0011100 00000 1232 4679999999999998777 553 3444444322 2222221 22223444
Q ss_pred EE--c----cCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCcc
Q 012333 327 SL--G----TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 400 (466)
Q Consensus 327 ~~--g----sD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~A 400 (466)
.+ + +|....+...+++..++.+... . ++|++++++++|.|||+++|++++ |+|++|++|
T Consensus 287 ~~~~g~~~~~~g~~~g~~~~l~~~l~~~~~~--~------------~~~~~~~l~~~T~~~A~~lgl~~~-G~i~~G~~A 351 (376)
T 1o12_A 287 KVKDGVPRLEDGTLAGSTLFFSQAVKNFRKF--T------------GCSITELAKVSSYNSCVELGLDDR-GRIAEGTRA 351 (376)
T ss_dssp EEETTEEECTTSCBCCBCCCHHHHHHHHHHH--H------------CCCHHHHHHHHTHHHHHHTTCTTS-SCCSTTSBC
T ss_pred EEeCCeEEeCCCcccccccCHHHHHHHHHHH--c------------CCCHHHHHHHHHHHHHHHhCCCCC-ccCCCCCcC
Confidence 44 2 3333333456788888765421 1 499999999999999999999765 999999999
Q ss_pred CEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECC
Q 012333 401 DMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445 (466)
Q Consensus 401 Dlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 445 (466)
||+|+|.+ .+|..||++|++||+++
T Consensus 352 Dlv~~d~~--------------------~~v~~v~~~G~~v~~~~ 376 (376)
T 1o12_A 352 DLVLLDED--------------------LNVVMTIKEGEVVFRSR 376 (376)
T ss_dssp CEEEECTT--------------------CCEEEEEETTEEEEEC-
T ss_pred CEEEECCC--------------------CCEEEEEECCEEEeecC
Confidence 99999987 58999999999999875
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-15 Score=137.84 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHH-HHhhhc-cCCCCeeEEEeecCChhhHHHHHh-c
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKIE-FLQNNLLSAHTVWVNHTEIGLLSR-A 296 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~H~~~~~~~~~~~~~~-~ 296 (466)
.+.+.+.++++.+++.|.++.+|+.+...... .....+. .+...+ ..+.+..+.|.. +.+.++.+++ .
T Consensus 133 ~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~~-------~E~~ai~r~~~la~~~~g~~lhi~HvS--t~~~v~~I~~A~ 203 (359)
T 3pnu_A 133 FDIEYLKPTLEAMSDLNIPLLVHGETNDFVMD-------RESNFAKIYEKLAKHFPRLKIVMEHIT--TKTLCELLKDYE 203 (359)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCCCSSCGGG-------TTGGGHHHHHHHHHHCTTSCEEECSCC--SHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCchHhHH-------HHHHHHHHHHHHHHHcCCCcEEEEecC--cHHHHHHHHhcC
Confidence 37889999999999999999999976542110 0111122 222222 235555555554 3566666666 4
Q ss_pred CCeEEECccchhh-------------ccCCc---------cHHHHHHcCCcE-EEccCCCCCCCCC----------CHH-
Q 012333 297 GVKVSHCPASAMR-------------MLGFA---------PIKEMLHADICV-SLGTDGAPSNNRM----------SIV- 342 (466)
Q Consensus 297 g~~~~~~p~~~~~-------------~~~~~---------~~~~~~~~gi~~-~~gsD~~~~~~~~----------~~~- 342 (466)
.+.+.+||+.-.. ..-.+ .+++.+..|.+. +++|||.|+.... ...
T Consensus 204 ~VtaEv~phhL~lt~~~~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~~~g~~Gi~~~~ 283 (359)
T 3pnu_A 204 NLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSAP 283 (359)
T ss_dssp TEEEEECSGGGTCCHHHHHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC------CCCSCBCCGG
T ss_pred CceEEEechhhEEcHHHhcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCCCCCCCChhhHH
Confidence 6677889874321 01112 455677889888 7999999874211 100
Q ss_pred --HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCC
Q 012333 343 --DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 411 (466)
Q Consensus 343 --~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~ 411 (466)
-++.... +. . .++++++++.+|.|||+++||..++ | |||+||| ..|+
T Consensus 284 ~~L~l~~~~-~~-~------------~~~l~~lv~~~s~nPAki~gL~~~~-----G--Adlvl~d-~~~~ 332 (359)
T 3pnu_A 284 VILPVLAEL-FK-Q------------NSSEENLQKFLSDNTCKIYDLKFKE-----D--KILTLEE-KEWQ 332 (359)
T ss_dssp GHHHHHHHH-HH-H------------HSCHHHHHHHHTHHHHHHHTCCCSS-----C--CEEEEEC-CCEE
T ss_pred HHHHHHHHH-Hh-h------------cCCHHHHHHHHHHhHHHHhCCCCCC-----C--CeEEEEe-cCEE
Confidence 0111111 11 1 2689999999999999999996443 4 9999999 6444
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=141.15 Aligned_cols=243 Identities=16% Similarity=0.096 Sum_probs=166.5
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceee---eecC------ccC--------HHHHHHHHHHh--
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF---AEAG------GQH--------VSEMAKAVELL-- 160 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv---~~~~------~~~--------~~~~~~~~~~~-- 160 (466)
..++.+|+..+.+......++++.+......+.++++.|||++ .+.. +.. ...+.++..+.
T Consensus 90 ~~~L~~~l~~~~~~~~~~~t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~ 169 (371)
T 2pgf_A 90 GKSLGEFVEKAIKVADIFHDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVELLDH 169 (371)
T ss_dssp CSCHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHHHccC
Confidence 4567788888888777778888888888889999999999997 2210 111 11223334456
Q ss_pred CCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccc
Q 012333 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 240 (466)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 240 (466)
|++.....+.... .++ ....+.++ ...+ .....+. +++.+.... ++.+.++++.|+++|+++.
T Consensus 170 gi~~~li~~~~r~---~~~----~~~~~~~~---~a~~----~~~~vvg--~dl~g~e~~-~~~~~~~~~~A~~~gl~~~ 232 (371)
T 2pgf_A 170 KIHVALMCIGDTG---HEA----ANIKASAD---FCLK----HKADFVG--FDHGGHEVD-LKEYKEIFDYVRESGVPLS 232 (371)
T ss_dssp SSEEEEEEEEEES---STT----CCHHHHHH---HHHH----TTTTEEE--EEEEESCCC-GGGGHHHHHHHHHTTCCBE
T ss_pred CCEEEEEEEecCC---CCH----HHHHHHHH---HHHh----CCCCEEE--EecCCCccc-HHHHHHHHHHHHHcCCcEE
Confidence 8877555444431 111 11222222 2222 1122233 444444444 6788999999999999999
Q ss_pred eeccCCcchhHHHHhhcCCCCch-HHHHhhhccCCCCeeEEEeecCChhh--HHHHHhcCCeEEECccchhhcc-----C
Q 012333 241 MHVAEIPYENQVVMDTRKVDHGT-VTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGVKVSHCPASAMRML-----G 312 (466)
Q Consensus 241 ~H~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~g~~~~~~p~~~~~~~-----~ 312 (466)
+|+.+... + .+ ..+.+.+..++.. .+.||.++++++ ++++++.|+.+++||.+++... .
T Consensus 233 ~HagE~~~---------~---~~~~~i~~al~~lg~~-ri~Hgv~l~~~~~l~~~l~~~~i~v~~cP~SN~~l~~~~~~~ 299 (371)
T 2pgf_A 233 VHAGEDVT---------L---PNLNTLYSAIQVLKVE-RIGHGIRVAESQELIDMVKEKNILLEVCPISNVLLKNAKSMD 299 (371)
T ss_dssp EEESCCTT---------S---SSSHHHHHHHHTSCCS-EEEECGGGGGCHHHHHHHHHTTCEEEECHHHHHHTTSSSCGG
T ss_pred EeeCCCCC---------C---CchHHHHHHHhccCCC-EEecchhccccHHHHHHHHHcCCeEEECcchhHHhCCCCccc
Confidence 99988631 0 11 2333444444444 699999998766 9999999999999999998763 2
Q ss_pred CccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 313 FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 313 ~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
..|+++++++|+++++|||.+...+ .+++.+++.+.... +++.+++ ..+|.|+++..+++
T Consensus 300 ~~pi~~ll~~Gv~V~lgTD~~~~~~-~~l~~e~~~a~~~~--------------~l~~~~l-~~lt~ns~~asf~~ 359 (371)
T 2pgf_A 300 THPIRQLYDAGVKVSVNSDDPGMFL-TNINDDYEELYTHL--------------NFTLEDF-MKMNEWALEKSFMD 359 (371)
T ss_dssp GCTHHHHHHTTCEEEECCBCHHHHT-CCHHHHHHHHHHHH--------------CCCHHHH-HHHHHHHHHHCCSC
T ss_pred cChHHHHHHCCCeEEEeCCCCcccC-CCHHHHHHHHHHHh--------------CCCHHHH-HHHHHHHHHHHcCC
Confidence 3699999999999999999865433 48999988775432 4999996 88899999999885
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=108.90 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=55.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~ 91 (466)
+++++|+|++|+++++.. ...++|+|++|+|++|++..+... ...+.++||++|++|+|||||+|+|+..
T Consensus 3 ~~~~li~n~~i~~~~~~~--~~~~~i~I~~g~I~~ig~~~~~~~--~~~~~~viD~~g~~v~PG~ID~H~H~~~ 72 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPSQ--PEVSAIAITDGLITAVGGDELLNS--ATEKTKKIDLKRKRAIPGLNDSHIHVIR 72 (81)
T ss_dssp CCSEEEESSEEECSCTTC--SEESEEEEETTEEEEEESGGGGGG--CCTTCEEEECTTCEEEECCCCTTEEEEC
T ss_pred cCCEEEECCEEEeCCCCC--ccccEEEEECCEEEEEeCchHhcc--cCCCCEEEECCCCEEeeCeEeeeeCCCC
Confidence 478999999999865432 246799999999999998654321 1235689999999999999999999854
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-14 Score=128.33 Aligned_cols=243 Identities=16% Similarity=0.104 Sum_probs=158.5
Q ss_pred CCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC--------ccCHHH--------HHHHHHHhCCe
Q 012333 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--------GQHVSE--------MAKAVELLGLR 163 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~--------~~~~~~--------~~~~~~~~g~~ 163 (466)
..++.+++..+.+...-..+.++.+......++.+.+.||+.+--.. +-.... +.++....|+.
T Consensus 53 ~~~l~~fl~~~~~~~~vl~t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~ 132 (326)
T 3pao_A 53 FNNLQEFLDLYYAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRDGEKLLGIR 132 (326)
T ss_dssp CSSHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhccCCCCHHHHHHHHHHHHHHHHhhCceE
Confidence 34667777777777666677777777777788999999999852211 112222 22233446766
Q ss_pred EEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceec
Q 012333 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 243 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 243 (466)
..+..+.... .+ ... ..+..+...++.+ ..+.+.+.... ...+++.+.++++.|++.|+++.+|+
T Consensus 133 ~~lI~~~~R~---~~-------~~~-a~~~~~~a~~~~~---~vvG~dL~g~E-~~~~~~~~~~~~~~A~~~gl~~~~Ha 197 (326)
T 3pao_A 133 HGLILSFLRH---LS-------EEQ-AQKTLDQALPFRD---AFIAVGLDSSE-VGHPPSKFQRVFDRARSEGFLTVAHA 197 (326)
T ss_dssp ECCEEEEETT---SC-------HHH-HHHHHHHHGGGGG---GCSEEEEESCC-TTCCGGGGHHHHHHHHHTTCEECEEE
T ss_pred EEEEEEeCCC---CC-------HHH-HHHHHHHHhhccc---cceeeCCCCCC-CCCCHHHHHHHHHHHHHcCCceeeec
Confidence 5444444321 11 111 1222222222322 33333333222 33456678899999999999999999
Q ss_pred cCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeEEECccchhhcc-----CCccH
Q 012333 244 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRML-----GFAPI 316 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~~-----~~~~~ 316 (466)
.+... +..+.+.++.++. ..+.||.+++ ++.++++++.++.+.+||.+|+... +..|+
T Consensus 198 gE~~~--------------~~~i~~al~~lg~-~rigHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi 262 (326)
T 3pao_A 198 GEEGP--------------PEYIWEALDLLKV-ERIDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTI 262 (326)
T ss_dssp SSSSC--------------HHHHHHHHHTTCC-SSEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHHTTSSSSGGGCCH
T ss_pred CCCCC--------------HHHHHHHHhcCCC-ceeeeeeeecccHHHHHHHHHcCCeEEECchhHHHhCCCCCcccChH
Confidence 88642 1222233333333 2389999998 6699999999999999999998773 35699
Q ss_pred HHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 317 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 317 ~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
++++++|++++++||.+...+. +++.+++.+.... +++.++ +..++.|+++...+.
T Consensus 263 ~~ll~~Gv~V~l~TDdp~~~~~-~l~~e~~~a~~~~--------------~l~~~~-l~~l~~nsi~~sf~~ 318 (326)
T 3pao_A 263 LDMLERGVKVTVNSDDPAYFGG-YVTENFHALQQSL--------------GMTEEQ-ARRLAQNSLDARLVK 318 (326)
T ss_dssp HHHHHHTCCEEECCBSHHHHTC-CHHHHHHHHHHHH--------------CCCHHH-HHHHHHHHHHTCC--
T ss_pred HHHHHCCCeEEEeCCCcccCCC-CHHHHHHHHHHHc--------------CCCHHH-HHHHHHHHHHHHHhc
Confidence 9999999999999998755444 8888888765432 489999 578889999988764
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-13 Score=123.98 Aligned_cols=243 Identities=15% Similarity=0.095 Sum_probs=158.6
Q ss_pred CCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecC--------ccCHHHHHH--------HHHHhCCeE
Q 012333 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--------GQHVSEMAK--------AVELLGLRA 164 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~--------~~~~~~~~~--------~~~~~g~~~ 164 (466)
.++.+++..+.+...-..+.++.+.-....++.+.+.||+.+--.. +-......+ +....|+..
T Consensus 57 ~~l~~fl~~f~~~~~vl~~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~ 136 (343)
T 3rys_A 57 TDLQSFLDLYYANMAVLQTEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEEDFGVST 136 (343)
T ss_dssp SSHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHHHHHHTTHHHHHSCEE
T ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEecHHHhccCCCCHHHHHHHHHHHHHHHhhcCceeE
Confidence 4566666666655554556666666666788999999999863211 112222222 233457666
Q ss_pred EeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceecc
Q 012333 165 CLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 244 (466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 244 (466)
.+-.+.+.. .+ .....+ ..+...++ .+..+.+.+.... ...+++.+.++++.|++.|+++.+|+.
T Consensus 137 ~lI~~~~R~---~~-------~~~a~~-~l~~a~~~---~~~vvG~dL~g~E-~~~~~~~~~~~~~~A~~~gl~~~~Hag 201 (343)
T 3rys_A 137 LLIAAFLRD---MS-------EDSALE-VLDQLLAM---HAPIAGIGLDSAE-VGNPPSKFERLYQRAAEAGLRRIAHAG 201 (343)
T ss_dssp EEEEEEETT---SC-------HHHHHH-HHHHHHHT---TCCCCEEEEESCC-TTCCGGGGHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEeCCC---CC-------HHHHHH-HHHHHHhC---CCCEEEEecCCcc-cCCCHHHHHHHHHHHHHCCCeEEEeeC
Confidence 554444421 11 112222 22222223 2344444343222 344567788999999999999999998
Q ss_pred CCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeEEECccchhhccC-----CccHH
Q 012333 245 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRMLG-----FAPIK 317 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~~~-----~~~~~ 317 (466)
+... +..+.+.+..++. ..+.||.++. ++.++++++.++.+.+||.+|+.... ..|++
T Consensus 202 E~~~--------------~~~i~~al~~lg~-~rIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~ 266 (343)
T 3rys_A 202 EEGP--------------ASYITEALDVLHV-ERIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSNVRLRAVDKLADHPLP 266 (343)
T ss_dssp SSSC--------------HHHHHHHHHTSCC-SEEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHHTTSSSCGGGCSHH
T ss_pred CCCC--------------HHHHHHHHhcCCc-ceeeeeeeecCChHHHHHHHhcCCCeeEchhHHHHhCCCCCcccchHH
Confidence 8643 2223333433333 2489999987 47899999999999999999987732 46999
Q ss_pred HHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 012333 318 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 318 ~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~ 389 (466)
.++++|++++++||.+...+. ++..+++.+.... +++.++ +..++.|+++...+++
T Consensus 267 ~ll~~Gv~V~l~TDdp~~~~~-~l~~E~~~a~~~~--------------~l~~~~-l~~l~~nsi~~sf~~~ 322 (343)
T 3rys_A 267 EMLAIGLNVCVNSDDPAYFGG-YVDDNFEQLVKVL--------------EFSVPE-QATLAANSIRSSFASD 322 (343)
T ss_dssp HHHHTTCCEEECCBSTTTTTC-CHHHHHHHHHHHH--------------CCCHHH-HHHHHHHHHHHSSSCH
T ss_pred HHHHCCCeEEEeCCCccccCC-CHHHHHHHHHHHc--------------CCCHHH-HHHHHHHHHHHHCCCH
Confidence 999999999999998876555 8899988765432 389999 5777899999988753
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-13 Score=124.66 Aligned_cols=155 Identities=10% Similarity=0.108 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHH-HhhcCCCCchHHHH--hhhccCCCCeeEEEeecCChhhHHHHHhc
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV-MDTRKVDHGTVTFL--DKIEFLQNNLLSAHTVWVNHTEIGLLSRA 296 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 296 (466)
.+.+.+.++++.+++.+.++.+|+.+........ .+... ....+ ...+..+.+..+.|.. +.+.++.+++.
T Consensus 117 ~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~~~~~~~E~~~----~~~~i~~~la~~~~~~~hi~Hvs--t~~~~~~i~~a 190 (347)
T 2z26_A 117 TSVDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARF----IESVMEPLRQRLTALKVVFEHIT--TKDAADYVRDG 190 (347)
T ss_dssp SCGGGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHH----HHHTHHHHHHHSTTCCEEECSCC--SHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecCCccccCHHHHHHHH----HHHHHHHHHHhhcCCcEEEEECC--cHHHHHHHHHh
Confidence 4667889999999999999999997643110000 00000 01111 1222344555455543 35556666654
Q ss_pred --CCeEEECccchhh---------c----cC---------CccHHHHHHcCCcE-EEccCCCCCCC----------CC--
Q 012333 297 --GVKVSHCPASAMR---------M----LG---------FAPIKEMLHADICV-SLGTDGAPSNN----------RM-- 339 (466)
Q Consensus 297 --g~~~~~~p~~~~~---------~----~~---------~~~~~~~~~~gi~~-~~gsD~~~~~~----------~~-- 339 (466)
++...+||+.... . .- ...+++.+..|.+. +++|||.|+.. ++
T Consensus 191 k~~Vt~e~~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~~~g~~Gi~~ 270 (347)
T 2z26_A 191 NERLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFN 270 (347)
T ss_dssp CTTEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSSSBCCCCCC
T ss_pred CCCceEeecchHheecHHHhcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcCCCCCCCcCc
Confidence 4566778875310 0 11 12355677888777 89999977631 01
Q ss_pred -CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 340 -SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 340 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
...-.+.... +. . ++|++++++.+|.|||+++||.+++|+|
T Consensus 271 ~e~~l~l~~~~-~~-~------------~~sl~~~v~~~s~nPAki~gl~~~kG~i 312 (347)
T 2z26_A 271 APTALGSYATV-FE-E------------MNALQHFEAFCSVNGPQFYGLPVNDTFI 312 (347)
T ss_dssp TTTHHHHHHHH-HH-H------------TTCGGGHHHHHHTHHHHHHTCCCCCCEE
T ss_pred HHHHHHHHHHH-hh-c------------CCCHHHHHHHHhHhHHHHhCCCCCCCeE
Confidence 1111111111 11 1 3899999999999999999996567875
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-11 Score=110.64 Aligned_cols=135 Identities=14% Similarity=0.109 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKV 300 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~ 300 (466)
+.+.++++.|++.|+++.+|+.+.... ..+.+.+..++.. .+.||.++. ++.++++++.++.+
T Consensus 192 ~~f~~~f~~A~~~gl~~~~HagE~~~~--------------~~i~~al~~lg~~-RIgHgv~l~~d~~l~~~l~~~~i~l 256 (367)
T 3iar_A 192 PGHVQAYQEAVKSGIHRTVHAGEVGSA--------------EVVKEAVDILKTE-RLGHGYHTLEDQALYNRLRQENMHF 256 (367)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCH--------------HHHHHHHHTSCCS-EEEECGGGGGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCeeEEecCCcCCh--------------HHHHHHHHccCCc-eeeeeeeecCCHHHHHHHHhCCcEE
Confidence 577889999999999999999886432 1222333333332 489999985 47899999999999
Q ss_pred EECccchhhcc-----CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 012333 301 SHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375 (466)
Q Consensus 301 ~~~p~~~~~~~-----~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 375 (466)
.+||.+++... ...|++.++++|++++++||.+.... .++..++..+.... +++.++ +.
T Consensus 257 e~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~v~l~TDdp~~~~-~~l~~e~~~a~~~~--------------glt~~e-l~ 320 (367)
T 3iar_A 257 EICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFK-STLDTDYQMTKRDM--------------GFTEEE-FK 320 (367)
T ss_dssp EECHHHHHHTSSSCTTSCCHHHHHHHTTCCEEECCBSHHHHT-CCHHHHHHHHHHHH--------------CCCHHH-HH
T ss_pred EECHHHHHHhCCCCCcccChHHHHHHCCCEEEECCCCccccC-CCHHHHHHHHHHHc--------------CCCHHH-HH
Confidence 99999998773 35699999999999999999864332 35777877654321 499998 67
Q ss_pred HHhHHHHHHcCCC
Q 012333 376 MATINGAKSVLWD 388 (466)
Q Consensus 376 ~~T~~~A~~lgl~ 388 (466)
.++.|+++...++
T Consensus 321 ~l~~nsi~~sf~~ 333 (367)
T 3iar_A 321 RLNINAAKSSFLP 333 (367)
T ss_dssp HHHHHHHHTSSSC
T ss_pred HHHHHHHHHhCCC
Confidence 7789999988875
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-09 Score=99.68 Aligned_cols=228 Identities=14% Similarity=0.048 Sum_probs=121.4
Q ss_pred HHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHH-HHHHHHHHHhcc-C
Q 012333 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCI-QSQKELYAKHHH-A 203 (466)
Q Consensus 130 ~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 203 (466)
.+..+.+.|||++++.+.. ......+..+..+++++...++.. ..+ .+......+.+ +...+.+..... .
T Consensus 52 ~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~la~~~~~~i~~~~G~hp---~~p-~~~~~~~~~~l~~~l~~~~~~gi~~~ 127 (330)
T 2ob3_A 52 GLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATGLWF---DPP-LSMRLRSVEELTQFFLREIQYGIEDT 127 (330)
T ss_dssp HHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEECCS---CCC-HHHHTCCHHHHHHHHHHHHHTCSTTS
T ss_pred HHHHHHHcCCCEEEeCCCCCcCCCHHHHHHHHHHhCCcEEEEecCCc---CCC-chhccCCHHHHHHHHHHHHHhhcccc
Confidence 4566889999999998743 455556666667766654433321 012 11111111111 111221111001 0
Q ss_pred --CCCCeEEEEeecccccCCHH---HHHHHHHHHHHcCCccceecc--CCcchhHHHHhhcCCCCchHHHHhhhccCCCC
Q 012333 204 --ADGRIRIWFGIRQIMNATDR---LLLETRDMAREFKTGIHMHVA--EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN 276 (466)
Q Consensus 204 --~~~~i~~~~~~~~~~~~~~~---~l~~~~~~a~~~~~~v~~H~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (466)
....+.+ +.. +..++. .++..+++|+++++++.+|+. ..... + ..+++...+.-..+
T Consensus 128 ~~k~~aiEi--Gld--~~~~~~q~~~f~~q~~lA~~~glPv~iH~~~~~r~a~-e-----------~l~iL~~~g~~~~~ 191 (330)
T 2ob3_A 128 GIRAGIIKV--ATT--GKATPFQELVLKAAARASLATGVPVTTHTAASQRDGE-Q-----------QAAIFESEGLSPSR 191 (330)
T ss_dssp CCCCSEEEE--ECS--SSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTHHH-H-----------HHHHHHHTTCCGGG
T ss_pred ccceeEEEE--eCC--CCCCHHHHHHHHHHHHHHHHhCCeEEEECCCCCCCHH-H-----------HHHHHHHcCcCccc
Confidence 1122232 222 223333 377889999999999999984 11111 0 23334443322224
Q ss_pred eeEEEee-cCChhhHHHHHhcCCeEEEC--ccchh--------------hc--cCCccHHHHHHcC--CcEEEccCCCCC
Q 012333 277 LLSAHTV-WVNHTEIGLLSRAGVKVSHC--PASAM--------------RM--LGFAPIKEMLHAD--ICVSLGTDGAPS 335 (466)
Q Consensus 277 ~~~~H~~-~~~~~~~~~~~~~g~~~~~~--p~~~~--------------~~--~~~~~~~~~~~~g--i~~~~gsD~~~~ 335 (466)
..+.||. ..+.+..+.+.++|..+.+. ....+ .. .....++++++.+ -.+.++||.+..
T Consensus 192 ~~i~H~f~~~~~e~a~~~~~~G~~i~~~~~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~~ 271 (330)
T 2ob3_A 192 VCIGHSDDTDDLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTFG 271 (330)
T ss_dssp EEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCSE
T ss_pred EEEeCCCCCCCHHHHHHHHhCCCEEEeCCCccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCC
Confidence 4688998 47888999999999998776 21111 00 0112367788888 678999998631
Q ss_pred CCCCCHH-HHH-------H----HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 336 NNRMSIV-DEM-------Y----LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 336 ~~~~~~~-~~~-------~----~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
.....++ ... . ....+.+. ...|+|++++.+++|.||+++|+
T Consensus 272 l~~~~~~~g~~~~~n~pn~~~~~~~~~ia~l---------~~~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 272 FSSYVTNIMDVMDRVNPDGMAFIPLRVIPFL---------REKGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp ECSSSTTHHHHHHHHCTTGGGHHHHTHHHHH---------HHTTCCHHHHHHHHTHHHHHHHS
T ss_pred cccccccCCCcccccCCCCcchHHHHHHHHH---------HHcCCCHHHHHHHHHHHHHHHhc
Confidence 1100000 100 0 00001100 00259999999999999999997
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=93.95 Aligned_cols=227 Identities=12% Similarity=0.044 Sum_probs=120.0
Q ss_pred HHHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHH-hccC
Q 012333 129 LCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK-HHHA 203 (466)
Q Consensus 129 ~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (466)
..+..+...|||++++++.. ......+..+..+++++...++.... ..| .+...... ++..+.+.+ +...
T Consensus 37 ~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~~-~hP-~~~~~~~~---~~l~~~~~~~l~~g 111 (291)
T 1bf6_A 37 QEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDA-FFP-EHVATRSV---QELAQEMVDEIEQG 111 (291)
T ss_dssp HHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCGG-GCC-THHHHSCH---HHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccCc-cCc-HhhhcCCH---HHHHHHHHHHHHhc
Confidence 34456778999999998752 35555566666676665443331100 011 11101111 111122221 2110
Q ss_pred ---CCCCeEEE--EeecccccCCH---HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCC
Q 012333 204 ---ADGRIRIW--FGIRQIMNATD---RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN 275 (466)
Q Consensus 204 ---~~~~i~~~--~~~~~~~~~~~---~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (466)
....+... .+.... ..++ +.+++.+++|+++++++.+|+....... ...+.+...+....
T Consensus 112 i~~~~~~~~~iGe~gld~~-~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~~~~-----------~~~~~l~~~~~~~~ 179 (291)
T 1bf6_A 112 IDGTELKAGIIAEIGTSEG-KITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGL-----------EQLALLQAHGVDLS 179 (291)
T ss_dssp STTSSCCEEEEEEEECBTT-BCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSHH-----------HHHHHHHHTTCCGG
T ss_pred cCCcCcceeeEEEEecCCC-CCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCCChH-----------HHHHHHHHcCCCch
Confidence 00112221 122211 1222 4577899999999999999985321100 12333444333333
Q ss_pred CeeEEEeec-CChhhHHHHHhcCCeEEECccchh---h-ccCCccHHHHHHcC--CcEEEccCCCCCC-------CCCCH
Q 012333 276 NLLSAHTVW-VNHTEIGLLSRAGVKVSHCPASAM---R-MLGFAPIKEMLHAD--ICVSLGTDGAPSN-------NRMSI 341 (466)
Q Consensus 276 ~~~~~H~~~-~~~~~~~~~~~~g~~~~~~p~~~~---~-~~~~~~~~~~~~~g--i~~~~gsD~~~~~-------~~~~~ 341 (466)
+.++.|+.. .+.+.++.+++.|..+.+...... . ......++++++.+ -.+.++||++... +....
T Consensus 180 ~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~ 259 (291)
T 1bf6_A 180 RVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDY 259 (291)
T ss_dssp GEEECCCCSSCCHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCCTTH
T ss_pred hEEEECCCCCCCHHHHHHHHHCCCEEEEccCcccCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCCccchhcCCCCHHH
Confidence 567889854 577888999999998877632100 0 01122466778887 4689999996320 00111
Q ss_pred H-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 342 V-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 342 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
. ..... .+.. .++|.+++.+++|.||+++||
T Consensus 260 ~~~~~~~-~l~~-------------~g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 260 LLTTFIP-QLRQ-------------SGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp HHHTHHH-HHHH-------------TTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHHHH-HHHH-------------cCCCHHHHHHHHHHhHHHHhC
Confidence 1 11111 1111 149999999999999999985
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-08 Score=91.70 Aligned_cols=230 Identities=11% Similarity=0.003 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCceeeeecCcc----CHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHH--hc
Q 012333 128 LLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK--HH 201 (466)
Q Consensus 128 ~~~~~~~~~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 201 (466)
...+..+.+.|||++++.+.. ......+..+..+++++...++.... ....+..... .++..+.++. ..
T Consensus 50 ~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~hp~~--~~~~~~~~~~---~~~l~~~~~~~~~~ 124 (314)
T 2vc7_A 50 VNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYI--DLPFYFLNRS---IDEIADLFIHDIKE 124 (314)
T ss_dssp HHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEBCCSS--CCCGGGTTCC---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeecCCCC--CCchhhhccC---HHHHHHHHHHHHHh
Confidence 334567889999999997733 35566667777787766554443211 0011110011 1222222221 11
Q ss_pred cCCC-----CCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccC--CcchhHHHHhhcCCCCchHHHHhhhccCC
Q 012333 202 HAAD-----GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE--IPYENQVVMDTRKVDHGTVTFLDKIEFLQ 274 (466)
Q Consensus 202 ~~~~-----~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (466)
..+. +.++..+..........+.+++.+++|+++++++.+|+.+ .... ...+.+...+...
T Consensus 125 gige~G~~~g~i~~~ld~~~~~~~q~~~~~~~~~lA~~~~~pv~iH~~~~~~~~~------------~~~~~l~~~~~~~ 192 (314)
T 2vc7_A 125 GIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGL------------EQQRILTEEGVDP 192 (314)
T ss_dssp CSSSSSCCCCSEEEECCTTCSCHHHHHHHHHHHHHHHHHCCCEEEECCTTTTHHH------------HHHHHHHHTTCCG
T ss_pred hcccCCCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHHCCEEEEeCCCcccChH------------HHHHHHHHcCCCc
Confidence 1111 2233322232222222345777899999999999999862 2110 1334444444333
Q ss_pred CCeeEEEeec-CChhhHHHHHhcCCeEEECccchh---h-ccCCccHHHHHHc--CCcEEEccCCCCCC------CCCCH
Q 012333 275 NNLLSAHTVW-VNHTEIGLLSRAGVKVSHCPASAM---R-MLGFAPIKEMLHA--DICVSLGTDGAPSN------NRMSI 341 (466)
Q Consensus 275 ~~~~~~H~~~-~~~~~~~~~~~~g~~~~~~p~~~~---~-~~~~~~~~~~~~~--gi~~~~gsD~~~~~------~~~~~ 341 (466)
.+.++.|+.. .+.+.++.+.+.|..+.++..... . ......+.++++. .-.+.++||++... +.+..
T Consensus 193 ~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~i~~~~~~g~~drilleTD~~~~~~~~~~~p~~~~ 272 (314)
T 2vc7_A 193 GKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKP 272 (314)
T ss_dssp GGEEETTGGGCCCHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCTTTEEECCCCBSSBCCGGGCTTSHH
T ss_pred ccEEEECCCCCCCHHHHHHHHHcCCEEEEeCCCcccCCCHHHHHHHHHHHHHcCCCCeEEEcCCccccccccccchhhhh
Confidence 4567889986 468889999999999887732110 0 0111234556665 45679999995210 00000
Q ss_pred H--------HHH-HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 342 V--------DEM-YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 342 ~--------~~~-~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
. ..+ .....+. ..+++.+++.+++|.||+++|+
T Consensus 273 ~g~~~~~~~~~~~~~~~~l~------------~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 273 KLAPRWSITLIFEDTIPFLK------------RNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp HHCTTCSTTHHHHTHHHHHH------------HTTCCHHHHHHHHTHHHHHHTC
T ss_pred cCCCCcCHHHHHHHHHHHHH------------HcCCCHHHHHHHHHHCHHHHhC
Confidence 0 000 0000011 1259999999999999999875
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-07 Score=84.71 Aligned_cols=260 Identities=13% Similarity=0.067 Sum_probs=146.9
Q ss_pred HHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHh---CCeEEeecccccCCCCC-Cccccc-CChHHHHHHHHHHH
Q 012333 127 TLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELL---GLRACLVQSTMDCGEGL-PASWAV-RTTDDCIQSQKELY 197 (466)
Q Consensus 127 ~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 197 (466)
....+..+.+.|++|++++. +.+...+.+..+.. |+++..+.+++...... .+.|.. ...+...+....-+
T Consensus 51 ~~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~is~~t~~~Gv~Iv~~TG~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei 130 (363)
T 3ovg_A 51 SIKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEIANAVKNLGGNVIMSTGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEI 130 (363)
T ss_dssp HHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHGGGTCEEEEEEECCCGGGSCTTTSHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHHHHhcccCCcEEEEeCCCCcCcccccCcHhhhcCCHHHHHHHHHHHH
Confidence 34455666789999999964 34556666667765 99998877766432110 112221 12233333333333
Q ss_pred HHhcc-------------CCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchH
Q 012333 198 AKHHH-------------AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV 264 (466)
Q Consensus 198 ~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 264 (466)
..-.+ ...+.++..+....+...-.+.++..+++|++.|+++.+|+....... ...
T Consensus 131 ~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~~t~~Q~~~f~aq~~~A~e~glPViiH~r~gr~a~-----------d~l 199 (363)
T 3ovg_A 131 EEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMAL-----------EVA 199 (363)
T ss_dssp HTCCBTTTTSSSCCCBCSCCCCEEEEEEEETBEEHHHHHHHHHHHHHHHHHCCCEEEEEETTCSHH-----------HHH
T ss_pred HhcccccccccccccCCCccCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCHH-----------HHH
Confidence 22111 112445544444333223345678888999999999999986432111 133
Q ss_pred HHHhhhccCCCCeeEEEeec-CChhhHHHHH-hcCCeEEECccchhh--c--cCCccHHHHHHcCC--cEEEccCCCCCC
Q 012333 265 TFLDKIEFLQNNLLSAHTVW-VNHTEIGLLS-RAGVKVSHCPASAMR--M--LGFAPIKEMLHADI--CVSLGTDGAPSN 336 (466)
Q Consensus 265 ~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~-~~g~~~~~~p~~~~~--~--~~~~~~~~~~~~gi--~~~~gsD~~~~~ 336 (466)
+++...+.-..+.++.|+.. .+.+..+.+. +.|..+.+.-..... . .....++++++.+. ++.++||.+..
T Consensus 200 ~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f~g~~~~~~~~~~~ra~~l~~lv~~~p~drILleTDap~~- 278 (363)
T 3ovg_A 200 KHLIGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRI- 278 (363)
T ss_dssp HHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHHHCCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG-
T ss_pred HHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHHCCcEEEECCeeccccCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC-
Confidence 45555444334567889884 4566677777 889888766321000 0 11234677788774 58999999721
Q ss_pred CCCCHHHHH------HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEE
Q 012333 337 NRMSIVDEM------YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 404 (466)
Q Consensus 337 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv 404 (466)
+.+.+.... ....+....... ....++|.+++.++.|.||+++|++. ..+++++|+..+-|+
T Consensus 279 ~~l~~~G~~~g~~~n~p~~l~~~~~~~-----a~~rGis~eei~~it~~Np~rlf~l~-~~~~~~~~~~~~~~~ 346 (363)
T 3ovg_A 279 LYQRNYGLTKGKQTFGLAYLFDRFLPL-----LKQVGVSKEAIFDILVNNPKRVLAFD-EKRNFDPLKVSKEVL 346 (363)
T ss_dssp GGSHHHHHHTTEECCCTHHHHHTHHHH-----HHHHTCCHHHHHHHHTHHHHHHTSCC-CCCCCCGGGSCHHHH
T ss_pred cCCCCCCccCCCCCCCccHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHHHHCCC-CcCccCcccCCHHHH
Confidence 111111110 000000000000 00125999999999999999999995 569999998765443
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=88.73 Aligned_cols=224 Identities=14% Similarity=0.111 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHhcCceeeeec---------CccCHHH--------HHHHHHHhCCeEEeecccccCCCCCCccccc
Q 012333 121 EDSYISTLLCGIELIHSGVTCFAEA---------GGQHVSE--------MAKAVELLGLRACLVQSTMDCGEGLPASWAV 183 (466)
Q Consensus 121 ~~~~~~~~~~~~~~~~~GvTtv~~~---------~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
++.+.-....++.+.+.||..+--. .+-.... +.++....|+..-+-.+.....
T Consensus 92 ed~~r~a~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~gi~~rlI~~~~R~~--------- 162 (380)
T 4gxw_A 92 DDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTGMRDAARDFGIGARLIPSIDREQ--------- 162 (380)
T ss_dssp HHHHHHHHHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEETTS---------
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEcCHHHhccccCCCHHHHHHHHHHHHHHHHHhcCCcEEEEEeecCCC---------
Confidence 3434444457788999999875321 1122222 2233445676665444333211
Q ss_pred CChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCch
Q 012333 184 RTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT 263 (466)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 263 (466)
....... ..+....+. ....+.+.+.... ...+++...++++.|++.|+++.+|+.+.....
T Consensus 163 -~~e~a~~-~~~~a~~~~--~~~VvG~dL~g~E-~~~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~------------- 224 (380)
T 4gxw_A 163 -DPDEAVA-IVDWMKANR--ADEVAGIGIDYRE-NDRPPELFWKAYRDARAAGFRTTAHAGEFGMPW------------- 224 (380)
T ss_dssp -CHHHHHH-HHHHHHHTC--CTTBCEEEEESCC-TTCCGGGGHHHHHHHHHTTCEEEEEESCTTCCH-------------
T ss_pred -CHHHHHH-HHHHHHHhC--CCCEEEEeecCCC-CCCCHHHHHHHHHHHHHcCCCeeeeccccCCch-------------
Confidence 1222222 222222222 2234444443322 233445677889999999999999998843211
Q ss_pred HHHHhhhccCCCCeeEEEeecC--ChhhHHHHHhcCCeEEECccchhhccC--------CccHHHHHHcCCcEEEccCCC
Q 012333 264 VTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRMLG--------FAPIKEMLHADICVSLGTDGA 333 (466)
Q Consensus 264 ~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~g~~~~~~p~~~~~~~~--------~~~~~~~~~~gi~~~~gsD~~ 333 (466)
..+.+.+..++. ..|.||..+ +++.++++++.++.+.+||.+|..... ..|++.+++.|++++++||.+
T Consensus 225 ~~i~~al~~lga-~RIgHG~~~~~d~~L~~~l~~~~I~lEvCP~SN~~l~~v~~~~~~~~HP~~~l~~~Gv~vtinTDDp 303 (380)
T 4gxw_A 225 RNVETAVDLLHV-DRVDHGYTIVDNPELCARYAERGIVFTVVPTNSYYLRTLPPDQWAERHPMRKMPGLGLKIHPNTDDP 303 (380)
T ss_dssp HHHHHHHHTSCC-SEEEECGGGGGCHHHHHHHHHHTCEEEECTTCHHHHHHSCTTTHHHHCGGGGTGGGTCEEEECCBSH
T ss_pred HHHHHHHHHcCC-cccccceeeccChHHHHHHHHhCceeEECCcchhhhcccccccccccChHHHHHHCCCeEEECCCCc
Confidence 111222222322 348899887 567799999999999999999976521 148999999999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 334 PSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.... .++..++..+. .. .+++.++.. .++.|+.+...++
T Consensus 304 ~~f~-t~Ls~Ey~~~~--~~------------~gls~~dl~-~l~~nsi~~sF~~ 342 (380)
T 4gxw_A 304 TLHK-VNPSEAWELMF--SH------------FGFTIADLK-QFMLNGIDGAWVD 342 (380)
T ss_dssp HHHT-CCHHHHHHHHH--HT------------SCCCHHHHH-HHHHHHHHHSSSC
T ss_pred hhhC-CCHHHHHHHHH--HH------------hCcCHHHHH-HHHHHHHHHHcCC
Confidence 4321 24666655432 11 258998865 5567888877764
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-07 Score=82.27 Aligned_cols=137 Identities=11% Similarity=0.044 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+...+++|.++++++.+|+...... ..+++...+. .. ..+.|+..-+.+.++.+.+.|+.+.+
T Consensus 114 ~~f~~~~~~a~~~~~Pv~iH~~~a~~~-------------~~~il~~~~~-~~-~~i~H~~~g~~~~~~~~~~~g~~i~~ 178 (259)
T 1zzm_A 114 WLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDL-PR-TGVVHGFSGSLQQAERFVQLGYKIGV 178 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCHHH-------------HHHHHHHHCC-TT-CEEETTCCSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEecccHHH-------------HHHHHHhcCC-CC-CEEEEcCCCCHHHHHHHHHCCCEEEE
Confidence 467888999999999999999653211 2334444432 12 23559877677888888889999988
Q ss_pred CccchhhccCCccHHHHHHcC--CcEEEccCCCCCCC------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.+.... .....++++++.. -++.++||+|...+ ...+..-......+... .++|.+++.
T Consensus 179 ~g~~~~--~~~~~~~~~~~~~~~dril~eTD~P~~~p~~~~g~~~~p~~l~~~~~~la~~-----------~g~~~e~~~ 245 (259)
T 1zzm_A 179 GGTITY--PRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCEL-----------RREPADEIA 245 (259)
T ss_dssp CGGGGC--TTTCSHHHHHHHSCGGGEEECCCBTSSCCTTCTTSCCCGGGHHHHHHHHHHH-----------CSSCHHHHH
T ss_pred Cceeec--cccHHHHHHHHhCCHHHEEEecCCCCccCCCCCCCCCcHHHHHHHHHHHHHH-----------HCcCHHHHH
Confidence 754322 1223456666652 46899999973211 00111000111111110 149999999
Q ss_pred HHHhHHHHHHcCC
Q 012333 375 RMATINGAKSVLW 387 (466)
Q Consensus 375 ~~~T~~~A~~lgl 387 (466)
+.+|.|+++++++
T Consensus 246 ~~~~~Na~rl~~l 258 (259)
T 1zzm_A 246 QALLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999987
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-06 Score=79.64 Aligned_cols=233 Identities=9% Similarity=0.013 Sum_probs=132.9
Q ss_pred HHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHH-HHh
Q 012333 126 STLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY-AKH 200 (466)
Q Consensus 126 ~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (466)
.+...+..+.++|++++++.+ +.+...+.+..+..|++++.+.+++... ..+.+..... .++..+.+ ++.
T Consensus 87 ~~~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~--~~P~~~~~~~---~~~L~~~~~~ei 161 (364)
T 3k2g_A 87 LAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLAS--SMPETAARLS---ADDIADEIVAEA 161 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGG--GCCGGGGTCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCC--CCchhhccCC---HHHHHHHHHHHH
Confidence 455667888999999999976 3567777778888898887666554211 1122222111 12222222 221
Q ss_pred cc------CCCCCeEEEEeecccc-cCCHHHHHHHHHHHHHcCCccceeccCC-cchhHHHHhhcCCCCchHHHHhhhcc
Q 012333 201 HH------AADGRIRIWFGIRQIM-NATDRLLLETRDMAREFKTGIHMHVAEI-PYENQVVMDTRKVDHGTVTFLDKIEF 272 (466)
Q Consensus 201 ~~------~~~~~i~~~~~~~~~~-~~~~~~l~~~~~~a~~~~~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (466)
.. ...+.++- ++..... ..-.+.++..+++|++.|+++.+|+... .... ...+++...+.
T Consensus 162 ~~Gi~~~~vkag~IGE-iGld~~~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a~~-----------e~l~iL~e~g~ 229 (364)
T 3k2g_A 162 LEGTDGTDARIGLIGE-IGVSSDFTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRLAH-----------RVLDLVEEEGA 229 (364)
T ss_dssp HTCBTTBSCCCSSEEE-EECCTTCCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCCHH-----------HHHHHHHHTTC
T ss_pred HhccccCCcceeEEEE-EEcCCCCCHHHHHHHHHHHHHHHHHCCeEEEecCCCCccHH-----------HHHHHHHHcCC
Confidence 11 11122321 2222211 1112356788889999999999998311 1110 12334444433
Q ss_pred CCCCeeEEEeec-C-ChhhHHHHHhcCCeEEECccch---hh---------ccCCccHHHHHHcCC--cEEEccCCCCC-
Q 012333 273 LQNNLLSAHTVW-V-NHTEIGLLSRAGVKVSHCPASA---MR---------MLGFAPIKEMLHADI--CVSLGTDGAPS- 335 (466)
Q Consensus 273 ~~~~~~~~H~~~-~-~~~~~~~~~~~g~~~~~~p~~~---~~---------~~~~~~~~~~~~~gi--~~~~gsD~~~~- 335 (466)
-..+.++.|+.. - +.+....+.+.|..+.+.-... +. ......++++++.|. ++.++||.+..
T Consensus 230 ~~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f~g~gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~drilleTD~p~~~ 309 (364)
T 3k2g_A 230 DLRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVKM 309 (364)
T ss_dssp CGGGEEECCCGGGTTCHHHHHHHHHHTCEEEECCTTCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhCCcEEEecCCcccccccccccccccHHHHHHHHHHHHHhCCcccEEEeCCCCCCC
Confidence 334466779983 5 8888999999999887663211 10 011234677778874 68999998621
Q ss_pred ------CCCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 012333 336 ------NNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 336 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~ 389 (466)
++..... ....... .. .|+|.+++.++.|.||+++|+++.
T Consensus 310 ~~~~~gg~~~~~l~~~~~~~l-~~-------------~Gis~eei~~~~~~Np~rlf~l~~ 356 (364)
T 3k2g_A 310 MLTRYGGNGYAFVTKHFLPRL-RR-------------HGLDDAALETLMVTNPRRVFDASI 356 (364)
T ss_dssp GSGGGTSCTTSHHHHHHHHHH-HH-------------TTCCHHHHHHHHTHHHHHHHCTTS
T ss_pred CCCCCCCCCcchHHHHHHHHH-HH-------------cCCCHHHHHHHHHHHHHHHhCCCc
Confidence 1111222 1111111 11 259999999999999999999864
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-06 Score=79.30 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.++..+++|+++++++.+|+.....+ ..+++...+ ..+. +.|+..-+.+.++.+.+.|+.+.+
T Consensus 126 ~~f~~~~~la~~~~lPv~iH~~~a~~~-------------~~~il~~~~--~~~~-v~H~~~g~~~~~~~~~~~g~~i~~ 189 (272)
T 2y1h_A 126 QVLIRQIQLAKRLNLPVNVHSRSAGRP-------------TINLLQEQG--AEKV-LLHAFDGRPSVAMEGVRAGYFFSI 189 (272)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHHH-------------HHHHHHHTT--CCSE-EEETCCSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCcHHH-------------HHHHHHhCC--CCCE-EEEccCCCHHHHHHHHHCCCEEEE
Confidence 467788999999999999999653211 223344433 1234 449877677889999999999988
Q ss_pred CccchhhccCCccHHHHHHcC--CcEEEccCCCCCCC------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.+.... ...++++++.. -.+.++||++...+ ....+...... +.+.. ++|.+++.
T Consensus 190 ~g~~~~----~~~~~~~~~~~~~drll~eTD~P~~~p~~g~~~~p~~l~~~~~~--la~~~-----------g~~~e~~~ 252 (272)
T 2y1h_A 190 PPSIIR----SGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEY--IAQVK-----------GISVEEVI 252 (272)
T ss_dssp CGGGGT----CHHHHHHHHHSCGGGEEECCCTTSSCSSTTSCCCGGGHHHHHHH--HHHHH-----------TSCHHHHH
T ss_pred CCcccC----cHHHHHHHHhCCHHHEEEecCCCCCCCCCCCcCcHHHHHHHHHH--HHHHH-----------CcCHHHHH
Confidence 865531 12356666553 36799999973211 00111111111 11101 48999999
Q ss_pred HHHhHHHHHHcCCCC
Q 012333 375 RMATINGAKSVLWDN 389 (466)
Q Consensus 375 ~~~T~~~A~~lgl~~ 389 (466)
+.++.|+++++++.+
T Consensus 253 ~~~~~N~~~l~~~~~ 267 (272)
T 2y1h_A 253 EVTTQNALKLFPKLR 267 (272)
T ss_dssp HHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 999999999999853
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-06 Score=81.92 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCCh-HHHHHHHHH-
Q 012333 122 DSYISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT-DDCIQSQKE- 195 (466)
Q Consensus 122 ~~~~~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 195 (466)
+........++.+...|+.|++|+. +.+...+.+..+..|+++..+..++......++.+..... ....++..+
T Consensus 80 ~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~~p~~~~~~~~~~~~~e~l~~~ 159 (360)
T 3tn4_A 80 ESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDM 159 (360)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEECCCCGGGSCTHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCccccCcccCCcccchhhhcccCHHHHHHH
Confidence 3344445566778889999999964 3567788888999999998877665432211211110000 001111111
Q ss_pred HHHHhccC------CCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhh
Q 012333 196 LYAKHHHA------ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDK 269 (466)
Q Consensus 196 ~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (466)
.+++..+. ..+.++...........-.+.++..++++++.|+++.+|........+ .+.++.+
T Consensus 160 ~i~Ei~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~iHt~~~~~~~e-----------~l~iL~e 228 (360)
T 3tn4_A 160 FMAELTEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPE-----------QAAYLLE 228 (360)
T ss_dssp HHHHHHTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEEECSTTCCHHH-----------HHHHHHH
T ss_pred HHHHHHhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEEEcCcccCCHH-----------HHHHHHH
Confidence 22222111 113333322222222222345788889999999999999865432111 2344455
Q ss_pred hccCCCCeeEEE-eecCChhhHHHHHhcCCeEEECccc-----hhh--ccCCccHHHHHHcCC--cEEEccCCC------
Q 012333 270 IEFLQNNLLSAH-TVWVNHTEIGLLSRAGVKVSHCPAS-----AMR--MLGFAPIKEMLHADI--CVSLGTDGA------ 333 (466)
Q Consensus 270 ~~~~~~~~~~~H-~~~~~~~~~~~~~~~g~~~~~~p~~-----~~~--~~~~~~~~~~~~~gi--~~~~gsD~~------ 333 (466)
.+.-..+.++.| +...+.+..+.+.+.|..+.+.-.. .+. ......++++++.|- ++.+++|..
T Consensus 229 eG~~~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~ 308 (360)
T 3tn4_A 229 HGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHDTVNVWLGR 308 (360)
T ss_dssp TTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSS
T ss_pred cCCCCCceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHHHHHHhcCcceEEEecCCCcccccC
Confidence 554445778899 6777778889999999988764211 000 011234677888774 689999972
Q ss_pred CCC-----------CCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 334 PSN-----------NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 334 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
|+. +.+...-.-....+. +.|+|.+++-++++.||+++|
T Consensus 309 py~~p~p~r~~~~~~~y~~i~~~~ip~L~-------------~~Gvs~e~I~~i~~~NP~rlf 358 (360)
T 3tn4_A 309 PFTLPEPFAEMMKNWHVEHLFVNIIPALK-------------NEGIRDEVLEQMFIGNPAALF 358 (360)
T ss_dssp CCCCCHHHHHHTTTCSTTHHHHTHHHHHH-------------HTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCcccccccCCCCCchhHHHHHHHHHH-------------HcCCCHHHHHHHHHHhHHHHh
Confidence 111 011111110011111 136999999999999999987
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=81.53 Aligned_cols=242 Identities=16% Similarity=0.115 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCC--cccccCChHHHHHH
Q 012333 119 TEEDSYISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLP--ASWAVRTTDDCIQS 192 (466)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 192 (466)
...+.+......+..+.+.||+++++.. +.+...+.+..+..|++++...+++......+ +.+... .....++
T Consensus 57 ~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG~hp~~~~~~~~~~~~~~-~~~~~~~ 135 (339)
T 3gtx_A 57 DHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATGFYYEGGGATTYFKFRAS-LGDAESE 135 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEECCCCTTTSSCHHHHHHHH-HSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcCCCccCccCCcCCccccc-ccCCHHH
Confidence 4456666777788889999999999975 35677777777788888776555543210000 000000 0011233
Q ss_pred HHHHHHH-h-ccCCC-----CCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHH
Q 012333 193 QKELYAK-H-HHAAD-----GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT 265 (466)
Q Consensus 193 ~~~~~~~-~-~~~~~-----~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 265 (466)
..+.+.. . ...+. +.+++.+........-.+.++..+++|++.++++.+|+.......+ ..+
T Consensus 136 L~~~~~~e~~~gIg~tg~k~g~IEigld~~~~~~~q~~~f~aq~~lA~~~glPViiH~~~gr~a~~-----------~~~ 204 (339)
T 3gtx_A 136 IYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGPQ-----------QAE 204 (339)
T ss_dssp HHHHHHHHHHTCSTTSSCCCSEEEEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEEECSTTCCHHH-----------HHH
T ss_pred HHHHHHHHHHhcccccCcccceEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCcCHHH-----------HHH
Confidence 3222222 1 11111 2224333333221122345678889999999999999954221111 233
Q ss_pred HHhhhccCCCCeeEEEee-cCChhhHHHHHhcCCeEEECccch--h-----hccCCccHHHHHHcCC--cEEEccCCCCC
Q 012333 266 FLDKIEFLQNNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASA--M-----RMLGFAPIKEMLHADI--CVSLGTDGAPS 335 (466)
Q Consensus 266 ~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~g~~~~~~p~~~--~-----~~~~~~~~~~~~~~gi--~~~~gsD~~~~ 335 (466)
++...+.-..+.++.|+. .-+.++.+.+.+.|..+.+.-... + .......++++++.+. .+.++||.+..
T Consensus 205 iL~~~~~~~~~~vi~H~~~~~~~e~a~~~l~~G~~i~~~g~~t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~p~~ 284 (339)
T 3gtx_A 205 LLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWH 284 (339)
T ss_dssp HHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEE
T ss_pred HHHHcCCCcccEEEEccCCCCCHHHHHHHHHcCcEEEEccCccccccCCCchHHHHHHHHHHHHhcCCCeEEEecCCCcc
Confidence 444444333455678998 467888999999999888754211 0 0011234677777764 58999998731
Q ss_pred ---CC--------------CCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 336 ---NN--------------RMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 336 ---~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
.+ ..... ...... .. ..++|.+++.++.|.||+++|+
T Consensus 285 ~~~~P~~~p~~~~~~~g~n~p~~l~~~~~~~-~~-------------~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 285 WLGRPPAIPEAALPAVKDWHPLHISDDILPD-LR-------------RRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp ESSSCCCCCGGGHHHHHTCSTTHHHHTHHHH-HH-------------HTTCCHHHHHHHHTHHHHHHHC
T ss_pred ccCCcccccccccccCCCCCchhHHHHHHHH-HH-------------HcCCCHHHHHHHHHHHHHHHhC
Confidence 00 00101 111111 11 1259999999999999999985
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=99.47 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=96.1
Q ss_pred HHHHHH-cCC---ccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhh--HHHHHhcCCeEEE
Q 012333 229 RDMARE-FKT---GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGVKVSH 302 (466)
Q Consensus 229 ~~~a~~-~~~---~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~g~~~~~ 302 (466)
+..+++ .|+ ++++|+.+.... ..+.+.+ ++.+. +.||+++.++. ++++++.++.+.+
T Consensus 504 Ln~ar~~~Gl~~i~~t~HaGE~~~~--------------e~l~~al--Lg~~R-IgHGv~l~edp~Li~lla~~~I~vev 566 (701)
T 2a3l_A 504 LNKLRESKGMTTITLRPHSGEAGDI--------------DHLAATF--LTCHS-IAHGINLRKSPVLQYLYYLAQIGLAM 566 (701)
T ss_dssp HHHHHTTTTCCCCEECCCCSSSSCT--------------HHHHHHH--HHCSS-CSCCGGGGGCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCCCCcccccCCCCCH--------------HHHHHHh--cCCCe-EEEEeecccCHHHHHHHHHcCCcEEE
Confidence 345564 577 789999886421 1111112 33333 69999998766 8999999999999
Q ss_pred Cccchhhc-cCCc--cHHHHHHcCCcEEEccCCCCCCCC--CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 012333 303 CPASAMRM-LGFA--PIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377 (466)
Q Consensus 303 ~p~~~~~~-~~~~--~~~~~~~~gi~~~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 377 (466)
||.+++.. .+.. |+..++++|++|++|||.+..... .+++++++.+.... +++..++.++
T Consensus 567 CP~SN~kl~~~~~~HPi~~ll~~Gv~VsLgTDdp~~~~~t~~dL~~Ey~~aa~~~--------------~ls~~dl~~l- 631 (701)
T 2a3l_A 567 SPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVW--------------KLSACDLCEI- 631 (701)
T ss_dssp CHHHHTTTTCCSTTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHH--------------TCCHHHHHHH-
T ss_pred CccchhhhccCchHhHHHHHHHCCCcEEEeCCCccccCCCCcCHHHHHHHHHHHc--------------CCCHHHHHHH-
Confidence 99999866 4555 999999999999999999765433 46889998876554 3889996666
Q ss_pred hHHHHHHcCCC
Q 012333 378 TINGAKSVLWD 388 (466)
Q Consensus 378 T~~~A~~lgl~ 388 (466)
|.|++++.+++
T Consensus 632 a~Ns~~asfl~ 642 (701)
T 2a3l_A 632 ARNSVYQSGFS 642 (701)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHHhCCC
Confidence 89999999985
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=79.08 Aligned_cols=137 Identities=12% Similarity=-0.006 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+...+++|+++++++.+|+...... ..+++...+....+. +.|+..-+.+.++.+.+.|+.+.+
T Consensus 112 ~~f~~~l~~a~~~~lpv~iH~~~a~~~-------------~~~il~~~~~~~~~~-v~H~~~g~~~~~~~~~~~g~yi~~ 177 (264)
T 1xwy_A 112 RAFVAQLRIAADLNMPVFMHCRDAHER-------------FMTLLEPWLDKLPGA-VLHCFTGTREEMQACVAHGIYIGI 177 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHGGGGGGSSCE-EECSCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEcCCchHH-------------HHHHHHhcCCCCCcE-EEEccCCCHHHHHHHHHCCeEEEE
Confidence 357788999999999999998643211 223333332112233 459866677888888889999888
Q ss_pred CccchhhccCCccHHHHHHcC--CcEEEccCCCCCCCC-----C-----C--HHHHHHHHHHHhcccccccCCCCCCCCC
Q 012333 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNNR-----M-----S--IVDEMYLASLINKGREVFANGTTDPAAL 368 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~~-----~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (466)
...... ......++.+++.. -++.++||+|...+. . . .+..... .+... .++
T Consensus 178 ~g~~~~-~~~~~~l~~~~~~~~~drll~eTD~P~~~~~~~~~~~~g~~n~p~~~~~~~~--~~a~~-----------~g~ 243 (264)
T 1xwy_A 178 TGWVCD-ERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQ--RIAHW-----------RGE 243 (264)
T ss_dssp CGGGGC-TTTSHHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHHHH--HHHHH-----------HTC
T ss_pred CccccC-CcCcHHHHHHHHhCCHHHEEEecCCCCcCccccccccCCCCCchHHHHHHHH--HHHHH-----------HCc
Confidence 753220 11123455666652 268999999642111 0 0 1111111 11110 149
Q ss_pred CHHHHHHHHhHHHHHHcCC
Q 012333 369 PAETVLRMATINGAKSVLW 387 (466)
Q Consensus 369 s~~~al~~~T~~~A~~lgl 387 (466)
|.+++.+.++.|+++++++
T Consensus 244 ~~e~~~~~~~~Na~rl~~l 262 (264)
T 1xwy_A 244 DAAWLAATTDANVKTLFGI 262 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999987
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-06 Score=75.19 Aligned_cols=142 Identities=8% Similarity=-0.054 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
.+.+++.+++|+++++++.+|+.....+ ..+++........ ..+.|+..-+.++++.+.+.|..+.
T Consensus 113 ~~~F~~ql~lA~e~~lPv~iH~r~a~~~-------------~l~il~~~~~~~~-~~V~H~fsG~~e~a~~~l~~G~yis 178 (287)
T 3rcm_A 113 EKALEAQLTLAAQLRLPVFLHERDASER-------------LLAILKDYRDHLT-GAVVHCFTGEREALFAYLDLDLHIG 178 (287)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHTTGGGCS-CEEECSCCCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcHHH-------------HHHHHHHcCCCCC-eEEEEeCCCCHHHHHHHHHCCcEEE
Confidence 4567888999999999999999764221 2233333322111 2466987778899999999999998
Q ss_pred ECccchhhccCCccHHHHHHcC--CcEEEccCCCCCCC----------CCCHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 012333 302 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN----------RMSIVDEMYLASLINKGREVFANGTTDPAALP 369 (466)
Q Consensus 302 ~~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 369 (466)
+....... .....++++++.- -.+.+.||.|-..+ .-.+..-......+...+ +++
T Consensus 179 ~~g~i~~~-k~~~~l~~~v~~ip~drlLlETD~P~l~p~~~~~~~rg~~n~P~~l~~v~~~lA~~~-----------g~s 246 (287)
T 3rcm_A 179 ITGWICDE-RRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVALHR-----------GES 246 (287)
T ss_dssp ECGGGGCT-TTCGGGHHHHTTSCTTSEEECCCTTSCCCTTCSSCCTTCCCCGGGHHHHHHHHHHHH-----------TSC
T ss_pred ECchhccc-cCHHHHHHHHHhcCCccEEEeccCCccCccccccccCCCcCCHHHHHHHHHHHHHHh-----------CcC
Confidence 88543321 1123455665542 35889999863211 001111111111111111 499
Q ss_pred HHHHHHHHhHHHHHHcCCCC
Q 012333 370 AETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 370 ~~~al~~~T~~~A~~lgl~~ 389 (466)
.+++.+.+|.|+++++|+..
T Consensus 247 ~eev~~~~~~N~~rlf~l~~ 266 (287)
T 3rcm_A 247 AEHTAAHTTATARDFFQLPA 266 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCCh
Confidence 99999999999999999853
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-06 Score=78.46 Aligned_cols=230 Identities=12% Similarity=0.086 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCceeeeecC-----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHH-HH
Q 012333 126 STLLCGIELIHSGVTCFAEAG-----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY-AK 199 (466)
Q Consensus 126 ~~~~~~~~~~~~GvTtv~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 199 (466)
.+...+..+.++||+++++.+ +.+...+.+..+..|++++...+++... ..+.+..... ++..+.+ ++
T Consensus 76 ~~~~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~--~~P~~~~~~~----~~L~~~~~~e 149 (365)
T 3rhg_A 76 DVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEK--FEGKRLADDI----DAMAKMIDDE 149 (365)
T ss_dssp HHHHHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCHH--HHGGGGGSCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCC--CCchhhcCCH----HHHHHHHHHH
Confidence 444566788999999999987 3466777777788898876655543111 0022222211 2222222 22
Q ss_pred hccC------CCCCeEEEEeecccccCCH---HHHHHHHHHHHHc-CCccceec-cCCcchhHHHHhhcCCCCchHHHHh
Q 012333 200 HHHA------ADGRIRIWFGIRQIMNATD---RLLLETRDMAREF-KTGIHMHV-AEIPYENQVVMDTRKVDHGTVTFLD 268 (466)
Q Consensus 200 ~~~~------~~~~i~~~~~~~~~~~~~~---~~l~~~~~~a~~~-~~~v~~H~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (466)
.... ..+.++- ++... ..++ +.++..++++++. |+++.+|+ .......+ ....+.
T Consensus 150 i~~gi~~t~vkag~IGE-iGld~--~~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e-----------~l~iL~ 215 (365)
T 3rhg_A 150 LNIGIDGTDIRAGMIGE-IGVSP--FFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDE-----------VLDILL 215 (365)
T ss_dssp HHTCSTTSSCCCCEEEE-EECCT--TCCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCCHHH-----------HHHHHT
T ss_pred HHhccccCCceeEEEEE-EEcCC--CCCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcCHHH-----------HHHHHH
Confidence 2111 0111211 22222 2233 4467788899999 99999997 42111110 233333
Q ss_pred hh-ccCCCCeeEEEee-c-CChhhHHHHHhcCCeEEECccc---hhh--------ccCCccHHHHHHcCC--cEEEccCC
Q 012333 269 KI-EFLQNNLLSAHTV-W-VNHTEIGLLSRAGVKVSHCPAS---AMR--------MLGFAPIKEMLHADI--CVSLGTDG 332 (466)
Q Consensus 269 ~~-~~~~~~~~~~H~~-~-~~~~~~~~~~~~g~~~~~~p~~---~~~--------~~~~~~~~~~~~~gi--~~~~gsD~ 332 (466)
.. +.-..+.++.|+. . -+.+....+.++|..+.+.-.. .+. ......++++++.|. .+.++||.
T Consensus 216 e~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g~g~~~tf~~~~~~~~d~~~a~~l~~li~~g~~drilleTD~ 295 (365)
T 3rhg_A 216 TEMGCDPAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDV 295 (365)
T ss_dssp TTTCCCGGGEEESCCGGGTTCHHHHHHHHHTTCEEEECCTTCCCBCSSSCBCCCHHHHHHHHHHHHHTTCGGGEEECCCC
T ss_pred hccCCCCCceEEecCCCCCCCHHHHHHHHhCCCEEEecCCCccccccccccccchHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 33 2222345678998 4 6788899999999998776321 000 011234677788874 58899998
Q ss_pred CCCC-------CCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 012333 333 APSN-------NRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 333 ~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~ 389 (466)
+... +..... ...... .. ..|+|.+++.++.|.||+++|++..
T Consensus 296 p~l~~~~~~G~~~~~~l~~~~~~~-~~-------------~~Gis~e~i~~~~~~Np~rlf~l~~ 346 (365)
T 3rhg_A 296 FLKQMWAKNGGNGWGFVPNVFLSL-LA-------------QRGIDKTIIDKLCIDNPANLLAAEN 346 (365)
T ss_dssp CSGGGSGGGTSCTTTHHHHTHHHH-HH-------------HTTCCHHHHHHHTTHHHHHHHHSCC
T ss_pred CCCCCCCcCCCCCchhHHHHHHHH-HH-------------HcCCCHHHHHHHHHHHHHHHHCCCC
Confidence 6311 111111 111111 11 1259999999999999999999853
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-06 Score=75.68 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCC---CCC-------------cccccC-
Q 012333 126 STLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGE---GLP-------------ASWAVR- 184 (466)
Q Consensus 126 ~~~~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~-------------~~~~~~- 184 (466)
.....+..+.+.|++|++|+. +.+...+.+..+..|+++..+.+++.... ++. +.|...
T Consensus 47 ~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (330)
T 3pnz_A 47 KSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFNKSFLWDGKIKPELKPIIGDFETYYEWIENT 126 (330)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECCCGGGGGSBCCGGGHHHHCSCSBHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCCccccccccccccccccccccccCchhhccC
Confidence 444566778889999999964 35677778888899999988777664211 011 111111
Q ss_pred ChHHHHHHHHHHHHHhccCCC---CCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCC
Q 012333 185 TTDDCIQSQKELYAKHHHAAD---GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261 (466)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~ 261 (466)
..++..+....-+.+...... +.+++.+....+...-.+.++..+++|++.|+++.+|+.......
T Consensus 127 ~~e~l~~~~~~ei~~Gi~~t~vkaGvIEiGld~~~~~~~q~~~f~aq~~~A~~~glPViiH~r~g~~a~----------- 195 (330)
T 3pnz_A 127 TTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVARAHHETKAPIHSHTEAGTMAL----------- 195 (330)
T ss_dssp CHHHHHHHHHHHHHTCSTTSSCCEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCCHH-----------
T ss_pred CHHHHHHHHHHHHHhhCCCcCcCcCeEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCcChH-----------
Confidence 122222222222222111100 112322222222222234577888999999999999986421111
Q ss_pred chHHHHhhhccCCCCeeEEEee-cCChhhHHHHHhcCCeEEECccchhh----ccCCccHHHHHHcCC--cEEEccCCCC
Q 012333 262 GTVTFLDKIEFLQNNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASAMR----MLGFAPIKEMLHADI--CVSLGTDGAP 334 (466)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~g~~~~~~p~~~~~----~~~~~~~~~~~~~gi--~~~~gsD~~~ 334 (466)
...+++...+.-..+.++.|+. .-+.+....+.+.|..+.+.-..... ......++.+++.|. ++.++||++.
T Consensus 196 ~~l~iL~e~~~~~~~vvi~H~~~s~~~e~a~~~l~~G~~i~~~g~~t~~~~~~~~~~~~l~~lv~~g~~drilleTD~p~ 275 (330)
T 3pnz_A 196 EQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTAR 275 (330)
T ss_dssp HHHHHHHHTTCCGGGEEETTGGGSCCHHHHHHHHTTTCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred HHHHHHHHcCCCCCeEEEecCCCCCCHHHHHHHHHcCcEEEEccCcccCCCChHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 0233444443333456677986 55678888899999988776321100 011224677777774 6899999872
Q ss_pred C--------CCCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHH-HHHHHhHHHHHHcCC
Q 012333 335 S--------NNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAET-VLRMATINGAKSVLW 387 (466)
Q Consensus 335 ~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~-al~~~T~~~A~~lgl 387 (466)
. .+.+... ...... +... . ...|+|.++ +.++.|.||+++|++
T Consensus 276 ~~~~~~~G~~~~~~~~~~~~~~~-l~~~---a------~~~Gis~ee~i~~~t~~Np~rlf~l 328 (330)
T 3pnz_A 276 KTYYKHYGHGPGLEYIAKKWVPR-FIDE---A------NEKGFDGEKLVKKFFVDNPARCFTF 328 (330)
T ss_dssp GGGSHHHHCCSTTTHHHHTHHHH-HHHH---H------HHTTSCHHHHHHHHHTHHHHHHSSC
T ss_pred CCCCCccCCCCCcchHHHHHHHH-HHHH---H------HHcCCCHHHHHHHHHHHhHHHHhcC
Confidence 1 1111111 111111 0000 0 012599998 999999999999997
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-05 Score=70.57 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
.+.+...+++|.++++++.+|+...... ..+.+...+....+.+ .|+...+.+.++.+.+.|+.+.
T Consensus 110 ~~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~~~p~~~~v-~H~~~~~~~~~~~~~~~g~~~~ 175 (265)
T 1yix_A 110 QESFIHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVTDCGGV-LHCFTEDRETAGKLLDLGFYIS 175 (265)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHTTGGGTCEE-ETTCCSCHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCchHH-------------HHHHHHhcCCCCCCEE-EEcCCCCHHHHHHHHHCCcEEE
Confidence 4567888999999999999999753221 2233333222222344 4988778888999988999998
Q ss_pred ECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCC---------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 302 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN---------RMSIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 302 ~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
+++.... .....++.+++. + -.+.++||++.... ...+...+.. +.+. .++|.
T Consensus 176 ~sg~~~~--~~~~~~~~~~~~~~~drll~~TD~P~~~~~~~~g~~~~~~~l~~~~~~---l~~~-----------~~~~~ 239 (265)
T 1yix_A 176 FSGIVTF--RNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEY---MAVL-----------KGVAV 239 (265)
T ss_dssp ECGGGGS--TTCHHHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHHHHH---HHHH-----------HTSCH
T ss_pred ECCcccc--CchHHHHHHHHhCChHHEEEecCCCCCCCcccCCCCCchHHHHHHHHH---HHHH-----------hCcCH
Confidence 8864322 112345566665 4 46899999974211 0111122211 1110 14899
Q ss_pred HHHHHHHhHHHHHHcCCC
Q 012333 371 ETVLRMATINGAKSVLWD 388 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl~ 388 (466)
++..++++.|++++++++
T Consensus 240 ~~~~~i~~~Na~rl~~l~ 257 (265)
T 1yix_A 240 EELAQVTTDNFARLFHID 257 (265)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 999999999999999984
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5.2e-06 Score=80.33 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=86.2
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHH--HHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEee
Q 012333 206 GRIRIWFGIRQIMNATDRLLLETRDM--AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV 283 (466)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~l~~~~~~--a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 283 (466)
..+.+.+........+.+.+.++++. +++.|+++.+|+.+..... ......+.+.+ .++. ..+.||+
T Consensus 292 ~VvG~DLaG~E~~g~p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g---------~~~~~~i~~Al-~Lga-~RIgHGv 360 (508)
T 3lgd_A 292 VVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQG---------TSIDRNILDAL-MLNT-TRIGHGF 360 (508)
T ss_dssp TEEEEEEESCTTTSCCTGGGHHHHTHHHHTTCCCCBCCEECCSSCCS---------STTTTHHHHHH-HTTC-SSEEECT
T ss_pred ceEEeccCCCCCCCCCHHHHHHHHHHHHHHHcCCceeeecccccCCC---------CCcHHHHHHHH-hcCC-ceeeeeE
Confidence 34444343322223345566777777 7889999999998864211 00011222333 2332 3489999
Q ss_pred cCC--hhhHHHHHhcCCeEEECccchhhccC-----CccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHH
Q 012333 284 WVN--HTEIGLLSRAGVKVSHCPASAMRMLG-----FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 348 (466)
Q Consensus 284 ~~~--~~~~~~~~~~g~~~~~~p~~~~~~~~-----~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~ 348 (466)
.+. ++.++++++.++.+.+||.+|..... ..|++.++++|++++++||.+.......+..+...+
T Consensus 361 ~l~~dp~l~~~l~~~~I~levCP~SN~~l~~v~~~~~hP~~~ll~~Gv~V~l~TDdp~~f~~~~Ls~Ey~~a 432 (508)
T 3lgd_A 361 ALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEV 432 (508)
T ss_dssp TGGGCHHHHHHHHHTTCCEEECHHHHHHTTSCSSGGGCTHHHHHHTTCCEEECCBSHHHHTCCTTHHHHHHH
T ss_pred ecCccHHHHHHHHhcCCeEEECcchHHHhCCCCCcccChHHHHHHCCCcEEEcCCCccccCCCchHHHHHHH
Confidence 986 78899999999999999999987732 359999999999999999986432221244554433
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=76.80 Aligned_cols=136 Identities=15% Similarity=0.013 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCccc-eeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 223 RLLLETRDMAREFKTGIH-MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
+.+++.+++|+++++|+. +|+-....+ ..+++..... ....+.|+..-+.++++.+.+.|..+.
T Consensus 104 ~~F~~ql~lA~e~~lPviSiH~r~a~~~-------------~~~il~~~~~--~~~~v~H~fsG~~e~a~~~l~~G~yis 168 (254)
T 3gg7_A 104 AVFQHILRRCEDHGGRILSIHSRRAESE-------------VLNCLEANPR--SGTPILHWYSGSVTELRRAISLGCWFS 168 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHH-------------HHHHHHHCGG--GEEEEEETCCSCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCcHHH-------------HHHHHHHcCC--CCcEEEEeCCCCHHHHHHHHcCCcEEE
Confidence 457788999999999997 999764321 2333333321 113466988888899999999999998
Q ss_pred ECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCC---CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 302 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN---RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 302 ~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
+.+... ....++++++. + -.+.+.||+|-... .-.+..-......+...+ +++.+++.+.
T Consensus 169 ~~g~~~----~~~~~~~~v~~ip~drlLlETD~P~~~~rg~~n~P~~v~~v~~~iA~~~-----------g~~~ee~~~~ 233 (254)
T 3gg7_A 169 VGPTMV----RTQKGAALIRSMPRDRVLTETDGPFLELDGQAALPWDVKSVVEGLSKIW-----------QIPASEVERI 233 (254)
T ss_dssp ECHHHH----TSHHHHHHHHHSCGGGEEECCCTTTSEETTEECCGGGHHHHHHHHHHHH-----------TSCHHHHHHH
T ss_pred ECcccC----chHHHHHHHHHcCCCeEEEeCCCCccccCCCCCCHHHHHHHHHHHHHHh-----------CcCHHHHHHH
Confidence 876543 11234455444 2 25889999973210 001111111111111111 4899999999
Q ss_pred HhHHHHHHcCCC
Q 012333 377 ATINGAKSVLWD 388 (466)
Q Consensus 377 ~T~~~A~~lgl~ 388 (466)
.+.|+.+++++.
T Consensus 234 ~~~N~~~lf~~~ 245 (254)
T 3gg7_A 234 VKENVSRLLGTV 245 (254)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHCCC
Confidence 999999999983
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.9e-06 Score=75.55 Aligned_cols=137 Identities=7% Similarity=0.008 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHH-cCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 223 RLLLETRDMARE-FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 223 ~~l~~~~~~a~~-~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
+.+++.+++|++ +++|+.+|+-+...+ ..+++........ ..+.|+..-+.++++.+.+.|..+.
T Consensus 154 ~~F~~ql~lA~e~~~lPviiH~r~A~~d-------------~l~iL~~~~~~~~-~gViH~FsGs~e~a~~~l~lG~yis 219 (325)
T 3ipw_A 154 SGYRTLSILHQKYPYLPFFFHCRKSWSD-------------LCQLNKELGYNGC-KGVVHCFDGTEEEMNQILNEGWDIG 219 (325)
T ss_dssp HHHHHTHHHHHHCTTCCEEEEEESCHHH-------------HHHHHHHTTCTTS-CEEECSCCCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCchHHH-------------HHHHHHhcCCCCC-cEEEEECCCCHHHHHHHHhcCcEEe
Confidence 457788999999 999999999764322 2334444332112 2466999889999999999999999
Q ss_pred ECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCC------------------------------CCCCHHHHHHHHH
Q 012333 302 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSN------------------------------NRMSIVDEMYLAS 349 (466)
Q Consensus 302 ~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~------------------------------~~~~~~~~~~~~~ 349 (466)
+.... ++ ..... ++++. . -.+.+-||+|-.. ..-.+..-...+.
T Consensus 220 ~~G~~-~k--~~~~~-~~v~~iPldrlLlETDaP~l~~~~~~~~~~~~~~p~p~r~~~k~~~~~~~g~rNeP~~v~~v~~ 295 (325)
T 3ipw_A 220 VTGNS-LQ--SIELL-NVMKQIPIERLHIETDCPYCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYVQRRNEPSNIIDIAI 295 (325)
T ss_dssp ECSGG-GS--SHHHH-HHHTTSCGGGEEECCCTTSCCCCTTSGGGGGCSSCCCCBCGGGCCTTSCBTTCCCGGGHHHHHH
T ss_pred eCccc-cC--cHHHH-HHHHhCCcccEEEeCCCccccccccccchhcccccCccccccccccccccCCcCcHHHHHHHHH
Confidence 88752 21 11112 33322 1 2478889986321 0001111111111
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 350 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.+...+ +++.+++.+..+.|+.+++++.
T Consensus 296 ~iA~l~-----------g~~~eeva~~t~~Na~~lF~~~ 323 (325)
T 3ipw_A 296 IMSSIK-----------HISLFEFVNKVYSNSMNMYFPT 323 (325)
T ss_dssp HHHHHH-----------TCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhh-----------CcCHHHHHHHHHHHHHHHhCcC
Confidence 121111 4999999999999999999874
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.7e-05 Score=67.75 Aligned_cols=140 Identities=14% Similarity=0.055 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHh-cCCe
Q 012333 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR-AGVK 299 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~-~g~~ 299 (466)
..+.+...+++|.++|+++.+|+...... ..+++........+. +.|+..-+.+.+..+.+ .|+.
T Consensus 107 ~~~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~p~~~~~~-i~H~~~g~~~~~~~~l~~~~~y 172 (265)
T 2gzx_A 107 QKEVFRKQIALAKRLKLPIIIHNREATQD-------------CIDILLEEHAEEVGG-IMHSFSGSPEIADIVTNKLNFY 172 (265)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHTTGGGTCE-EETTCCSCHHHHHHHHHTSCCE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecccHHH-------------HHHHHHhcCCCCCcE-EEEcCCCCHHHHHHHHHHCCce
Confidence 34567889999999999999998653211 223334333112233 45766556667777666 7888
Q ss_pred EEECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCCC-------C-CHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 012333 300 VSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNR-------M-SIVDEMYLASLINKGREVFANGTTDPAALP 369 (466)
Q Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 369 (466)
+.+...... .....++.+++. | -++.+|||+|..... . ......... +... .++|
T Consensus 173 ~~~sg~~~~--~~~~~~~~~i~~~~~dril~gSD~P~~~~~~~~g~~~~~~~~~~~~~~--l~~~-----------~~~~ 237 (265)
T 2gzx_A 173 ISLGGPVTF--KNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQ--IAEL-----------KGLS 237 (265)
T ss_dssp EEECGGGGC--SSCCHHHHHHHHSCTTTEEECCCTTSCCCTTCTTSCCCGGGHHHHHHH--HHHH-----------TTCC
T ss_pred EEecceeec--CCcHHHHHHHHhCChhhEEEccCCCCCCCcccCCCCCChHHHHHHHHH--HHHH-----------hCCC
Confidence 887744322 112345666665 3 479999999743210 0 111111111 1110 1489
Q ss_pred HHHHHHHHhHHHHHHcCCCC
Q 012333 370 AETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 370 ~~~al~~~T~~~A~~lgl~~ 389 (466)
.++.-+.++.|+++++++.+
T Consensus 238 ~~~~~~i~~~Na~rl~~~~~ 257 (265)
T 2gzx_A 238 YEEVCEQTTKNAEKLFNLNS 257 (265)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhCCch
Confidence 99999999999999999853
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=74.86 Aligned_cols=142 Identities=11% Similarity=0.009 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.++..+++|+++++++.+|+.....+ ..+++..... .....+.|+..-+.+.++.+.+.|+.+.+
T Consensus 127 ~~f~~ql~lA~~~~lPv~iH~r~a~~~-------------~~~il~~~~~-~~~~~i~H~f~g~~~~~~~~l~~g~yi~~ 192 (301)
T 2xio_A 127 KYFEKQFELSEQTKLPMFLHCRNSHAE-------------FLDITKRNRD-RCVGGVVHSFDGTKEAAAALIDLDLYIGF 192 (301)
T ss_dssp HHHHHTHHHHHHHCCCEEEEEESCHHH-------------HHHHHHHTGG-GSSCEEETTCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEecCchHH-------------HHHHHHhccC-CCCcEEEEccCCCHHHHHHHHhcCcEEEE
Confidence 467788899999999999999653221 2233333221 11245789877788888999999999988
Q ss_pred CccchhhccCCccHHHHHHcC--CcEEEccCCCCCC---------------C-------------CCCHHHHHHHHHHHh
Q 012333 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSN---------------N-------------RMSIVDEMYLASLIN 352 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~g--i~~~~gsD~~~~~---------------~-------------~~~~~~~~~~~~~~~ 352 (466)
.... +. . ....++++.. -++.++||+|-.. + ...+..-......+.
T Consensus 193 ~g~~-~~--~-~~~~~~~~~~p~drlLleTD~P~~~~~~~~~~~~~l~~~~p~~~~~~~g~~~~~~n~p~~v~~~~~~ia 268 (301)
T 2xio_A 193 NGCS-LK--T-EANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMS 268 (301)
T ss_dssp CGGG-SS--S-HHHHHHHHTSCGGGEEECCCTTSCCCCTTSTTGGGCCCCCCEESSCCTTSEETTCCCGGGHHHHHHHHH
T ss_pred cccc-cC--C-hHHHHHHHhCChHHEEEecCCCcccccccccccccccccCcccccccccccCCCCCChHHHHHHHHHHH
Confidence 7541 11 1 1123455542 3588999997321 0 000110111111111
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 353 ~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
... ++|.+++.+..+.|+++++++.. +|.|
T Consensus 269 ~l~-----------g~~~e~~~~~~~~Na~rlf~~~~-~~~~ 298 (301)
T 2xio_A 269 AVR-----------DEDPLELANTLYNNTIKVFFPVI-AENL 298 (301)
T ss_dssp HHH-----------TCCHHHHHHHHHHHHHHHHCCC------
T ss_pred HHH-----------CcCHHHHHHHHHHHHHHHhCchh-hhhc
Confidence 111 49999999999999999999853 5654
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-05 Score=68.67 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
.+.+...+++|.++++++.+|+...... ..+++........+.++ |+..-+.+.++.+.+.|+.+.
T Consensus 119 ~~~f~~~~~~a~~~~lPv~iH~~~~~~~-------------~~~il~~~p~~~~~~I~-H~~~g~~~~~~~~~~~g~y~~ 184 (268)
T 1j6o_A 119 KRVFVEQIELAGKLNLPLVVHIRDAYSE-------------AYEILRTESLPEKRGVI-HAFSSDYEWAKKFIDLGFLLG 184 (268)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHSCCCSSCEEE-TTCCSCHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCchHHH-------------HHHHHHhcCCCCCCEEE-EcCCCCHHHHHHHHHCCCeEE
Confidence 4567888999999999999998653221 23334443321234555 987777788888888898888
Q ss_pred ECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCCC--------CCHHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 012333 302 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNR--------MSIVDEMYLASLINKGREVFANGTTDPAALPAE 371 (466)
Q Consensus 302 ~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 371 (466)
+...... .....++.+++. + -++.++||+|..... ...+..... .+... .++|.+
T Consensus 185 ~sg~~~~--~~~~~l~~~i~~~~~driL~eTD~P~~~~~~~~g~~n~p~~~~~~~~--~la~~-----------~~~~~e 249 (268)
T 1j6o_A 185 IGGPVTY--PKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVE--TISQV-----------LGVPEA 249 (268)
T ss_dssp ECGGGGC--TTCHHHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHHHH--HHHHH-----------HTSCHH
T ss_pred ecccccc--cchHHHHHHHHhCChhhEEEecCCCCCCCcccCCCCCchHHHHHHHH--HHHHH-----------hCcCHH
Confidence 7744321 111235555554 3 468999999743210 011111111 11110 148999
Q ss_pred HHHHHHhHHHHHHcCCC
Q 012333 372 TVLRMATINGAKSVLWD 388 (466)
Q Consensus 372 ~al~~~T~~~A~~lgl~ 388 (466)
+.-+.++.|+++++++.
T Consensus 250 ~~~~i~~~Na~rlf~l~ 266 (268)
T 1j6o_A 250 KVDEATTENARRIFLEV 266 (268)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999999873
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00026 Score=64.50 Aligned_cols=139 Identities=7% Similarity=-0.029 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC---------hhhH
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---------HTEI 290 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~---------~~~~ 290 (466)
...+.+...++.+.++|+++.+|+.... ..+....+....-+.++.|+.... .+.+
T Consensus 134 ~~~~~~~~~~~~a~~~glpv~iH~~~~~---------------l~~~~~~l~~~p~~~Vi~H~g~p~~~~g~~~~~~~~~ 198 (294)
T 4i6k_A 134 LNTPDWQKFLRNVESLNWQVELHAPPKY---------------LVQLLPQLNEYSFDVVIDHFGRVDPVKGIEDPDYQKF 198 (294)
T ss_dssp SSSHHHHHHHHHHHHTTCEEEEECCHHH---------------HHHHHHHHTTSSSCEEESGGGCCCTTTCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCEEEEeeCcch---------------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHH
Confidence 3557889999999999999999986411 111222222222456777876532 1233
Q ss_pred HHHHhc-CCeEEECccchhhccC------CccHHHHHHc-C-CcEEEccCCCCCCCC--CCHHHHHHHHHHHhccccccc
Q 012333 291 GLLSRA-GVKVSHCPASAMRMLG------FAPIKEMLHA-D-ICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFA 359 (466)
Q Consensus 291 ~~~~~~-g~~~~~~p~~~~~~~~------~~~~~~~~~~-g-i~~~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 359 (466)
..+.+. ++.+.++-........ ...++.+++. | -++.+|||+|..... .+....+. .+...
T Consensus 199 ~~l~~~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~~~~y~~~~~---~l~~~----- 270 (294)
T 4i6k_A 199 LSLLNVKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQHESLITYEDAIK---AFKQI----- 270 (294)
T ss_dssp HHHCCTTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTCTTTCCHHHHHH---HHHHH-----
T ss_pred HHHHhCCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCCcCCCCHHHHHH---HHHHH-----
Confidence 334333 5656544221111000 1234454443 4 368999999854322 12212111 11111
Q ss_pred CCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 360 NGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 360 ~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.++.++.-+.++.|+++++|++
T Consensus 271 -------~~~~~~~~~i~~~NA~rl~~l~ 292 (294)
T 4i6k_A 271 -------VFDKHEQCLILNQNPTELFGFS 292 (294)
T ss_dssp -------CCCHHHHHHHHTHHHHHHHTC-
T ss_pred -------CCCHHHHHHHHHHCHHHHhCCC
Confidence 2788899999999999999984
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00027 Score=64.13 Aligned_cols=141 Identities=11% Similarity=-0.034 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC---------hhh
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---------HTE 289 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~---------~~~ 289 (466)
....+.+..+++.|.++|+++.+|+...... ....++..+. .+.++.|+.... .+.
T Consensus 120 ~~~~~~~~~~~~~a~~~~lpv~iH~~~~~~~------------~~~~~~~~~p---l~~vi~H~g~~~~~~~~~~~~~~~ 184 (288)
T 2ffi_A 120 DLTGAQWRPLLERIGEQGWHVELHRQVADIP------------VLVRALQPYG---LDIVIDHFGRPDARRGLGQPGFAE 184 (288)
T ss_dssp CTTSTTTHHHHHHHHHHTCEEEECSCTTTHH------------HHHHHHTTTT---CCEEESGGGSCCTTSCTTCTTHHH
T ss_pred CcccHHHHHHHHHHHHCCCeEEEeechhhHH------------HHHHHHHHCC---CCEEEECCCCCCCCCCCCChhHHH
Confidence 3445678889999999999999998653100 0223333333 357778987654 233
Q ss_pred HHHHHhc-CCeEEECccchhhcc-------CCccHHHHHHc-C-CcEEEccCCCCCCCC--CCHHHHHHHHHHHhccccc
Q 012333 290 IGLLSRA-GVKVSHCPASAMRML-------GFAPIKEMLHA-D-ICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREV 357 (466)
Q Consensus 290 ~~~~~~~-g~~~~~~p~~~~~~~-------~~~~~~~~~~~-g-i~~~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~ 357 (466)
+..+.+. ++.+.++........ ....++.+++. | -++.+|||+|..... ......+.. +...
T Consensus 185 ~~~l~~~~n~y~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~~~~~~~~~~~~~~~~---~~~~--- 258 (288)
T 2ffi_A 185 LLTLSGRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQ---FEAL--- 258 (288)
T ss_dssp HTTCCCCSCEEEEEECGGGSSSCHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHH---HHHH---
T ss_pred HHHHHhCCCEEEEeCcchhhccccCCCHHHHHHHHHHHHHHhCCCceEEecCCCCCCCCCCCCHHHHHHH---HHHH---
Confidence 3333333 444444322111000 00235555554 5 368999999754211 122111111 1111
Q ss_pred ccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 012333 358 FANGTTDPAALPAETVLRMATINGAKSVLWDN 389 (466)
Q Consensus 358 ~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~ 389 (466)
+++.++.-+.+..|++++++++.
T Consensus 259 ---------~~~~~~~~~i~~~NA~rl~~l~~ 281 (288)
T 2ffi_A 259 ---------GCSAQLRQALLLDTARALFGFEL 281 (288)
T ss_dssp ---------CCCHHHHHHHHTHHHHHHTTCCC
T ss_pred ---------CCCHHHHHHHHHHCHHHHhCccc
Confidence 25888888899999999999853
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=65.18 Aligned_cols=137 Identities=11% Similarity=0.113 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEE
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~ 301 (466)
.+.+++.+++|+++++++.+|+........ . ....+++...+.-..+.++.|+ +.+.++.+.+.|..+.
T Consensus 109 ~~~f~~ql~lA~e~~lPv~iH~r~~~~~~a-~-------~~~~~il~~~~~~~~~~vi~H~---~~~~a~~~l~~G~yis 177 (261)
T 3guw_A 109 IEVLKSQLELAKRMDVPCIIHTPRGNKLKA-T-------RKTLEILESLDFPADLAVIDHV---NFETLDMVLETEYWIG 177 (261)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCSSSTTHH-H-------HHHHHHHHHTTCCTTSEEEESC---CTTTHHHHHTSSSEEE
T ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCcccch-H-------HHHHHHHHHcCCCCCCEEEEeC---CHHHHHHHHhCCEEEE
Confidence 345788999999999999999965310000 0 0133444444333334567788 7788999999999887
Q ss_pred EC--ccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCCCCCHHHHHHHHHHHhcc-cccccCCCCCCCCCCHHHHHHH
Q 012333 302 HC--PASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASLINKG-REVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 302 ~~--p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ls~~~al~~ 376 (466)
+. |....... .+++++. + -.+.+.||+|-.. -++.. +... ..... -.+++. +.+.
T Consensus 178 ~~~~pg~~t~~~----~~~~v~~ipldrlLlETD~P~~p-----n~P~~----v~~~~~~la~-----~~g~~~--v~~~ 237 (261)
T 3guw_A 178 LTVQPGKLSAED----AARIVAEHGPERFMLNSDAGYRD-----VEITT----VAEAAVKIEE-----AVGREE--MEKV 237 (261)
T ss_dssp EECC-------C----CTTGGGGCC-CCEEEECCCCCC---------------CCCCTTHHHH-----HCTTGG--GGHH
T ss_pred ecCCCCcccHHH----HHHHHHhCCcceEEEecCCCCCC-----CCHHH----HHHHHHHHHh-----hCChhH--HHHH
Confidence 65 22111111 1222222 2 3578899996411 00000 0000 00000 013554 6677
Q ss_pred HhHHHHHHcCCCC
Q 012333 377 ATINGAKSVLWDN 389 (466)
Q Consensus 377 ~T~~~A~~lgl~~ 389 (466)
.+.|+.+++++..
T Consensus 238 ~~~Na~rlf~~~~ 250 (261)
T 3guw_A 238 ARENARKFLRVLE 250 (261)
T ss_dssp HHSSHHHHTTC--
T ss_pred HHHHHHHHHCCCc
Confidence 8888899999853
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.018 Score=51.51 Aligned_cols=134 Identities=10% Similarity=0.020 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHc-CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCCh-hhHHHHHh-cC
Q 012333 221 TDRLLLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSR-AG 297 (466)
Q Consensus 221 ~~~~l~~~~~~a~~~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~-~g 297 (466)
..+.+...++.|.++ |+++.+|+........ .. ....++..+. ..+.++.|+..... +.++.+.+ .+
T Consensus 128 ~~~~~~~~~~~a~~~~~lpv~iH~~~~~~~~~-~~-------~~~~~l~~~p--~l~iv~~H~G~~~~~~~~~~~~~~~~ 197 (272)
T 3cjp_A 128 QIKSLKPIFKYSMDSGSLPIWIHAFNPLVLQD-IK-------EIAELCKAFP--KVPVILGHMGGSNWMTAVELAKEIQN 197 (272)
T ss_dssp CGGGGHHHHHHHHHTTCCCEEECCSTTCCHHH-HH-------HHHHHHHHST--TSCEEEGGGGGGGHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHhccCCcEEEeCCCCCcccc-HH-------HHHHHHHHCC--CceEEEECCCCccHHHHHHHHHhCCC
Confidence 456788999999999 9999999864211000 00 0223344432 23456667654322 23333433 46
Q ss_pred CeEEECccchhhccCCccHHHHHHc-CCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 298 VKVSHCPASAMRMLGFAPIKEMLHA-DICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~-gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
+.+.++..... ..++.+++. +-++.+|||+|.. .+...... +.. .++|.++.-+.
T Consensus 198 ~y~~~s~~~~~-----~~~~~~~~~~~dril~gSD~P~~----~~~~~~~~---~~~------------~~l~~~~~~~i 253 (272)
T 3cjp_A 198 LYLDTSAYFST-----FVLKIVINELPLKCIFGTDMPFG----DLQLSIEA---IKK------------MSNDSYVANAV 253 (272)
T ss_dssp EEEECTTCSCH-----HHHHHHHHHSTTTEECCCCTTSS----CHHHHHHH---HHH------------HCSSHHHHHHH
T ss_pred EEEEecccccH-----HHHHHHHHhCCCeEEEeCCCCCC----ChHHHHHH---HHh------------cCCCHHHHHHH
Confidence 66665433221 123444432 5689999999643 22221111 111 13899999999
Q ss_pred HhHHHHHHcCCC
Q 012333 377 ATINGAKSVLWD 388 (466)
Q Consensus 377 ~T~~~A~~lgl~ 388 (466)
+..|++++++++
T Consensus 254 ~~~Na~rl~~l~ 265 (272)
T 3cjp_A 254 LGDNISRLLNIE 265 (272)
T ss_dssp HTHHHHHHHTC-
T ss_pred HHHHHHHHhCcc
Confidence 999999999984
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.012 Score=54.10 Aligned_cols=28 Identities=4% Similarity=-0.145 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
....+.+..+++.|.++|+++.+|....
T Consensus 141 ~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 168 (327)
T 2dvt_A 141 YYDLPQYRPFWGEVEKLDVPFYLHPRNP 168 (327)
T ss_dssp CTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred CCCCcchHHHHHHHHHcCCeEEECCCCC
Confidence 4455678999999999999999998643
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.036 Score=50.08 Aligned_cols=221 Identities=13% Similarity=0.072 Sum_probs=108.2
Q ss_pred HHHHHHhcCceeeeecCc-------cCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhcc
Q 012333 130 CGIELIHSGVTCFAEAGG-------QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHH 202 (466)
Q Consensus 130 ~~~~~~~~GvTtv~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (466)
.+..+-..||...+..+. ..-..+.+.++...-+...... +++. ......++..+ + .+
T Consensus 52 ~l~~md~~GV~~~V~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~-------v~p~----~~~~a~~eL~~-~---~~ 116 (291)
T 3irs_A 52 MFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAKAYPDKFHPVGS-------IEAA----TRKEAMAQMQE-I---LD 116 (291)
T ss_dssp HHHHHHHTTCCEEEEECCEETTTEECCHHHHHHHHHHSTTTEEEEEE-------CCCS----SHHHHHHHHHH-H---HH
T ss_pred HHHHHHHCCCCEEEEcCCCccccccccHHHHHHHHHHCCCcEEEEEe-------cCcc----CHHHHHHHHHH-H---Hh
Confidence 345567889987665442 2234445555554333322111 1111 11233333333 2 23
Q ss_pred CCCCCeEEEEeec-ccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEE
Q 012333 203 AADGRIRIWFGIR-QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 281 (466)
Q Consensus 203 ~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 281 (466)
.+--.++...... .......+.+..+++.|.++|+++.+|+........ . .+.......++..+ -..+.++.|
T Consensus 117 ~g~~Gi~~~~~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~~~~~~~---~-~~~p~~~~~v~~~~--P~l~ivl~H 190 (291)
T 3irs_A 117 LGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNAGPDI---T-YTNPEHIDRVLGDF--PDLTVVSSH 190 (291)
T ss_dssp TTCCCEEECGGGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSSSCSSSG---G-GGCHHHHHHHHHHC--TTCCEEEEG
T ss_pred CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCCCCCCCC---c-cCCHHHHHHHHHHC--CCCEEEeec
Confidence 3334444332211 122345567889999999999999999976411000 0 00000012233332 234577889
Q ss_pred eecCChhh-HHHHHh-cCCeEEECccchhh-ccCCccHHHHHHc-C-CcEEEccCCCCCCCCCCHHHHHHHHHHHhcccc
Q 012333 282 TVWVNHTE-IGLLSR-AGVKVSHCPASAMR-MLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 356 (466)
Q Consensus 282 ~~~~~~~~-~~~~~~-~g~~~~~~p~~~~~-~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (466)
+.....++ ++.+.+ .++.+.+. .... ......+.++++. | -++.+|||+|.. .+...+. .+..
T Consensus 191 ~G~~~~~~~~~l~~~~~nvy~~~S--g~~~~~~~~~~~~~~~~~~g~drllfgSD~P~~----~~~~~~~---~~~~--- 258 (291)
T 3irs_A 191 GNWPWVQEIIHVAFRRPNLYLSPD--MYLYNLPGHADFIQAANSFLADRMLFGTAYPMC----PLKEYTE---WFLT--- 258 (291)
T ss_dssp GGTTCHHHHHHHHHHCTTEEEECG--GGGSSSTTHHHHHHHHTTGGGGTBCCCCCBTSS----CHHHHHH---HHHT---
T ss_pred CCcccHHHHHHHHhHCCCeEecHH--HHhccCCCHHHHHHHHHHhCcceEEEecCCCCC----CHHHHHH---HHHH---
Confidence 86533233 333322 25444432 2211 0111233444432 3 257899999653 2222211 1111
Q ss_pred cccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 357 ~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
.++|.++.-+.++.|+++++++..+-|
T Consensus 259 ---------l~l~~e~~~~i~~~NA~rl~~~~~~~~ 285 (291)
T 3irs_A 259 ---------LPIKPDAMEKILHGNAERLLAQAGREG 285 (291)
T ss_dssp ---------SSCCHHHHHHHHTHHHHHHHHHSCC--
T ss_pred ---------CCCCHHHHHHHHHHHHHHHhCcccccc
Confidence 148999999999999999999876555
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0068 Score=56.69 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHc----CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhcc-------------------------CC
Q 012333 224 LLLETRDMAREF----KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF-------------------------LQ 274 (466)
Q Consensus 224 ~l~~~~~~a~~~----~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~ 274 (466)
.+++.+++|.++ ++++.+|+-...... .+++..... ..
T Consensus 180 ~F~~QL~LA~e~~~~~~lPv~IH~R~A~~d~-------------l~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (401)
T 3e2v_A 180 FFEEQLKISCLNDKLSSYPLFLHMRSACDDF-------------VQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHP 246 (401)
T ss_dssp HHHHHHHHTTSSHHHHTSCEEEEEESCHHHH-------------HHHHHHHHHCEECSSCTTCGGGC--CCTTCEECCCT
T ss_pred HHHHHHHHHHhhhccCCCeEEEEecchHHHH-------------HHHHHHhhccccccccccccccccccccccccccCC
Confidence 467788999999 999999997654332 222222110 01
Q ss_pred CCeeEEEeecCChhhHHHHHhcC--CeEEECccchhhccCCccHHHHHHc-C-CcEEEccCCC
Q 012333 275 NNLLSAHTVWVNHTEIGLLSRAG--VKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGA 333 (466)
Q Consensus 275 ~~~~~~H~~~~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~ 333 (466)
....+.|+..-+.++++.+.+.| ..+.+.... ++. .. ..++++. . -.+.+=||.|
T Consensus 247 ~~~~V~H~FsGs~e~a~~~l~lG~~~yis~~g~~-~k~--~~-~~e~v~~iPldrLLlETDaP 305 (401)
T 3e2v_A 247 DRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCS-LRT--EE-NLAVVKQIPTERLLLETDAP 305 (401)
T ss_dssp TCCEEECSCCCCHHHHHHHHHHCTTEEEEECGGG-GSS--HH-HHHHHHTSCGGGEEECCCTT
T ss_pred CCcEEEEcCCCCHHHHHHHHhCCCCEEEEeCCEe-cCC--HH-HHHHHHhCCchhEEEecCCC
Confidence 13468899999999999999999 888887652 211 11 1123222 1 1367788886
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.029 Score=51.04 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchhHH--------HHhhc-CCCCch-----HHHHhhhccCCCCeeEEEeecC
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQV--------VMDTR-KVDHGT-----VTFLDKIEFLQNNLLSAHTVWV 285 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~--------~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~H~~~~ 285 (466)
...+.+...++.|.++++++.+|.......... ..... ...... ..++..+. ..+.++.|+...
T Consensus 132 ~~~~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~P--~l~~v~~H~gg~ 209 (307)
T 2f6k_A 132 FGSPVLERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFFMDTTMTFINMLKYHFFEKYP--NIKVIIPHAGAF 209 (307)
T ss_dssp TTCGGGHHHHHHHHTTTCEEEEECCCCSCCCTTSSTTCCHHHHHHHHHHHHHHHHHHHTTHHHHCT--TCEEEESGGGTT
T ss_pred CCcHhHHHHHHHHHHcCCeEEECCCCCccccccccccccchhccchHHHHHHHHHHHhcCccccCC--CCeEEccCCCcc
Confidence 345678899999999999999999754321000 00000 000000 01222221 235677887531
Q ss_pred Ch---------------hhHHHHHhcCCeEEECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCCCCCHHHHHHHH
Q 012333 286 NH---------------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLA 348 (466)
Q Consensus 286 ~~---------------~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~~~~~~~~~~~ 348 (466)
-+ +.+....+ ++.+.++.... ...++.+++. | -++.+|||+|... ........
T Consensus 210 ~p~~~~~~~~~~~~~~~~~~~~~~~-n~y~~~s~~~~-----~~~l~~~~~~~g~drll~gSD~P~~~----~~~~~~~~ 279 (307)
T 2f6k_A 210 LGIVDDRIAQYAQKVYQVDVYDVMH-HVYFDVAGAVL-----PRQLPTLMSLAQPEHLLYGSDIPYTP----LDGSRQLG 279 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHH-HSEEECCSSCT-----TTHHHHHTTTSCGGGEECCCCTTTSC----HHHHHHHH
T ss_pred chhhHHHHHhhccccCcccHHHHHh-heEEeccCCCC-----HHHHHHHHHhcCcccEEEecCCCCCC----chhHHHHH
Confidence 11 12222233 66666543321 1235555554 3 3689999997532 21111111
Q ss_pred HHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 349 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
..+... .++|.++.-+.+..|+++++++
T Consensus 280 ~~l~~~-----------~~l~~~~~~~i~~~Na~rl~~~ 307 (307)
T 2f6k_A 280 HALATT-----------DLLTNEQKQAIFYDNAHRLLTE 307 (307)
T ss_dssp HHHHHC-----------TTSCHHHHHHHHTHHHHHHHHC
T ss_pred HHHhhc-----------cCCCHHHHHHHHHHHHHHHhCc
Confidence 111110 1389999888999999998864
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.091 Score=47.69 Aligned_cols=139 Identities=12% Similarity=-0.094 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccC-CCCeeEEEeecCCh-------------
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-QNNLLSAHTVWVNH------------- 287 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~------------- 287 (466)
.+.+...++.+.++|+++.+|+.... ..+....+... +-+.++.|......
T Consensus 121 ~~~~~~~~~~~~~~glpv~ih~~~~~---------------l~~l~~ll~~~P~l~iVi~H~G~p~~~~~~~~~~~~~~w 185 (303)
T 4do7_A 121 DADFARGVAWLQANDYVYDVLVFERQ---------------LPDVQAFCARHDAHWLVLDHAGKPALAEFDRDDTALARW 185 (303)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCCGGG---------------HHHHHHHHHHCCSSCEEEGGGGCCCGGGCC---CHHHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEecCHHH---------------HHHHHHHHHHCCCCCEEEeCCCCCCccccccccchHHHH
Confidence 34678889999999999999986421 11222222222 34678888766421
Q ss_pred -hhHHHHHhc-CCeEEECccchhhc----------cC-CccHHHHHHc-C-CcEEEccCCCCCCCCCCHHHHHHHHHH-H
Q 012333 288 -TEIGLLSRA-GVKVSHCPASAMRM----------LG-FAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASL-I 351 (466)
Q Consensus 288 -~~~~~~~~~-g~~~~~~p~~~~~~----------~~-~~~~~~~~~~-g-i~~~~gsD~~~~~~~~~~~~~~~~~~~-~ 351 (466)
+.+..+++. ++.+.++-...... .. .+-++.+++. | -++.+|||+|........-........ .
T Consensus 186 ~~~l~~la~~~nv~~klSg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~dri~fgSD~P~~~~~~~~~~~~~~~~~~~ 265 (303)
T 4do7_A 186 RAALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWA 265 (303)
T ss_dssp HHHHHHHHTSTTEEEEECSCGGGSCTTTCCCHHHHHHHHHHHHHHHHHHCGGGEEECCCBTGGGGTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEeCCccccccccccccCCCHHHHHHHHHHHHHHhCcccEEEeCCCCCCcCcCCHHHHHHHHHHHH
Confidence 234455544 45555542211100 00 0113344443 3 479999999754222122111111100 0
Q ss_pred hcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 352 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 352 ~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
.. +++.++.=+.+..|+++++|++
T Consensus 266 ~~-------------~l~~~~~~~i~~~Na~rl~~l~ 289 (303)
T 4do7_A 266 ES-------------RLSAAERSALWGGTAARCYALP 289 (303)
T ss_dssp HH-------------HCCHHHHHHHTTHHHHHHTTCC
T ss_pred hc-------------CCCHHHHHHHHHHHHHHHhCCC
Confidence 00 2788888888999999999984
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.42 Score=43.89 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
..+++.+..+.+.+.++++++.+|....
T Consensus 154 ~l~d~~~~p~~~~~~e~~lpv~iH~~~~ 181 (334)
T 2hbv_A 154 DLDDATLEAFLTHCANEDIPILVHPWDM 181 (334)
T ss_dssp CTTSHHHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEECCCCC
Confidence 4566789999999999999999999753
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=2 Score=39.26 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
...++.+..+.+.+.++++++.+|....
T Consensus 151 ~l~d~~~~~~~~~~~e~~lpv~iH~~~~ 178 (336)
T 2wm1_A 151 DLNAQELFPVYAAAERLKCSLFVHPWDM 178 (336)
T ss_dssp ETTCGGGHHHHHHHHHHTCEEEEECCSC
T ss_pred CCCCccHHHHHHHHHHcCCEEEECCCCC
Confidence 3455678899999999999999999753
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=93.26 E-value=2.4 Score=37.15 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=47.1
Q ss_pred hhhHHHHHhcCCeEEECccchhhcc---CCccHHHHHHcCCcEEEccCCCCCCC-CCCHHHHHHHHHHHhcccccccCCC
Q 012333 287 HTEIGLLSRAGVKVSHCPASAMRML---GFAPIKEMLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKGREVFANGT 362 (466)
Q Consensus 287 ~~~~~~~~~~g~~~~~~p~~~~~~~---~~~~~~~~~~~gi~~~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
++.++.+++.|+.+.++-.+..... .....+.+++.|+.+++|||.-.... ...+-+.+.... .+
T Consensus 147 ~~~l~~l~~~G~~iEiN~~s~~g~~g~~~~~~~~~~~~~gl~~~igSDaH~~~~r~~~~~~a~~~l~--~~--------- 215 (262)
T 3qy7_A 147 PSLLYHLVEKGAASQITSGSLAGIFGKQLKAFSLRLVEANLIHFVASDAHNVKTRNFHTQEALYVLE--KE--------- 215 (262)
T ss_dssp THHHHHHHHTTCEEEEEHHHHHTTTCHHHHHHHHHHHHTTCCCEEECCBCSSSSSCCCHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHCCCEEEEECCccCcccchHHHHHHHHHHhCCCeEEEEccCCCCCCCCchHHHHHHHHH--HH---------
Confidence 3567888889987665533321111 11235677889999999999653322 333434433321 11
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 363 TDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 363 ~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
+....+-+ ...||..++.
T Consensus 216 -----~G~~~a~~-~~~n~~~il~ 233 (262)
T 3qy7_A 216 -----FGSELPYM-LTENAELLLR 233 (262)
T ss_dssp -----HCSHHHHH-HHHHHHHHHT
T ss_pred -----hCHHHHHH-HHHHHHHHHC
Confidence 12333444 5689998886
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=92.17 E-value=5.3 Score=34.55 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=31.1
Q ss_pred hhhHHHHHhcCCeEEECccch--hhccC------CccHHHHHHcCCcEEEccCCCCC
Q 012333 287 HTEIGLLSRAGVKVSHCPASA--MRMLG------FAPIKEMLHADICVSLGTDGAPS 335 (466)
Q Consensus 287 ~~~~~~~~~~g~~~~~~p~~~--~~~~~------~~~~~~~~~~gi~~~~gsD~~~~ 335 (466)
++.++.+++.|+.+.++-.+. ....+ ..-++.+.+.|+.+++|||.-..
T Consensus 151 ~~~l~~l~~~G~~lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~~~GSDaH~~ 207 (247)
T 2wje_A 151 EKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNL 207 (247)
T ss_dssp HHHHHHHHHTTCEEEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSEEECCBCCS
T ss_pred HHHHHHHHHCCCEEEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467888889998876653332 11111 11234456899999999997543
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.92 E-value=7.6 Score=35.77 Aligned_cols=45 Identities=11% Similarity=-0.135 Sum_probs=30.3
Q ss_pred cCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCc
Q 012333 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (466)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 247 (466)
+.+-..+++..... ....+++.+..+.+.+.++|++|.+|.....
T Consensus 153 ~~G~~Gv~l~~~~~-~~~~~d~~~~p~~~~~~e~g~pV~iH~g~~~ 197 (357)
T 3nur_A 153 DLGFKGALIMGRAQ-DGFLDQDKYDIIFKTAENLDVPIYLHPAPVN 197 (357)
T ss_dssp TTCCCCEEEESCBT-TBCTTSGGGHHHHHHHHHHTCCEEEECCCCC
T ss_pred hcCceEEEeCCCCC-CCCCCCccHHHHHHHHHhcCCeEEEecCCCC
Confidence 44445555532222 2334556788999999999999999997643
|
| >2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=89.35 E-value=3.4 Score=37.97 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCCcchh------HHHHh-hcCCCCc-hHHHHhhhccCCCCeeEEEeecCChhhHH
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYEN------QVVMD-TRKVDHG-TVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~------~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~H~~~~~~~~~~ 291 (466)
...+.+..+++.|.++++++.+|........ .+... ......- ...++..+ -.-+.++.|+...-+..+.
T Consensus 156 l~d~~~~p~~~~a~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~a~~~li~~~v~~~~--P~l~~vi~H~Gg~~p~~~~ 233 (350)
T 2gwg_A 156 LTDRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDF--PELKFVIPHGGGAVPYHWG 233 (350)
T ss_dssp TTSGGGHHHHHHHHHHTCCEEECCCC---------TTHHHHHHHHHHHHHHHSCHHHHC--TTCCEEESGGGTTTGGGHH
T ss_pred CCCHHHHHHHHHHHHcCCeEEECCCCCCcccccccccccchHHHHHHHHHHhcCccccC--CCCcEEeccCCCcchhhHH
Confidence 4566788999999999999999987542210 00000 0000000 00122222 2335788998632222211
Q ss_pred ---H------------HHhcCCeEEECccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCCCC-----CHHHHHHHHH
Q 012333 292 ---L------------LSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRM-----SIVDEMYLAS 349 (466)
Q Consensus 292 ---~------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~~~-----~~~~~~~~~~ 349 (466)
. ....++.+.++.... ..++.+++. | -++.+|||+|...... ..+.....
T Consensus 234 r~~~~~~~~~~~~l~~~~~~n~y~d~s~~~~------~~l~~l~~~~g~dril~gSD~P~~~~~~~p~~~~~~~~~~~-- 305 (350)
T 2gwg_A 234 RFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQ------PGIDLLNTVIPVDNVLFASEMIGAVRGIDPRTGFYYDDTKR-- 305 (350)
T ss_dssp HHHHHHHHTTCCCHHHHTTTTEEEECCCCSH------HHHHHHHHHSCGGGEECCCCCSSSCCCEETTTTEETTCTHH--
T ss_pred HHHHHHHhccCCCcHHHHhhcEEEEecccCc------HHHHHHHHHhCcccEEEecCCCCCcccCCcccccchhhHHH--
Confidence 1 122345555443221 234555544 4 3689999997432100 00011000
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 350 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
.+... .+++.++.-+.+..|+++++++
T Consensus 306 ~l~~~-----------~~l~~~~~~~i~~~NA~rl~~~ 332 (350)
T 2gwg_A 306 YIEAS-----------TILTPEEKQQIYEGNARRVYPR 332 (350)
T ss_dssp HHHHC-----------SSSCHHHHHHHHTHHHHHHCHH
T ss_pred HHHhc-----------cCCCHHHHHHHHHHHHHHHHHh
Confidence 01100 1388999999999999999975
|
| >1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=0.89 Score=38.54 Aligned_cols=87 Identities=9% Similarity=-0.010 Sum_probs=57.3
Q ss_pred ChhhHHHHHhcCCeEEECccchhhcc------CCc----cHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhccc
Q 012333 286 NHTEIGLLSRAGVKVSHCPASAMRML------GFA----PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 355 (466)
Q Consensus 286 ~~~~~~~~~~~g~~~~~~p~~~~~~~------~~~----~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 355 (466)
+.+.++.+++.|+.+.++-.+..+.. ... -++...+.|+++.++||......-.++.+....+...
T Consensus 113 ~~~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisSDAh~~~~v~~~~~~~~l~~~~---- 188 (212)
T 1v77_A 113 DHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVI---- 188 (212)
T ss_dssp CHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHT----
T ss_pred CHHHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhcCCHHHHHHHHHHc----
Confidence 45778889999999988765543210 011 2233456699999999986443223344444433221
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 356 EVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 356 ~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
|++.++++.+.|.+|.+++..
T Consensus 189 -----------G~~~e~~~~~l~~~~~~i~~~ 209 (212)
T 1v77_A 189 -----------GMEIPQAKASISMYPEIILKR 209 (212)
T ss_dssp -----------TCCHHHHHHTTTHHHHHHHC-
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHh
Confidence 599999999999999998863
|
| >1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A* | Back alignment and structure |
|---|
Probab=81.20 E-value=21 Score=32.89 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCccce-eccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEE---------eecCChhhHHHH
Q 012333 224 LLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH---------TVWVNHTEIGLL 293 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H---------~~~~~~~~~~~~ 293 (466)
.=+++++...+.|+.+.+ |+.+. ...+.++......+.+| ...+++++++.+
T Consensus 179 ~G~~vV~emnrlGmivDlSH~s~~------------------~~~dvl~~s~~PviaSHSn~ral~~h~RNl~De~l~~l 240 (369)
T 1itu_A 179 FGQRVVKELNRLGVLIDLAHVSVA------------------TMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 (369)
T ss_dssp HHHHHHHHHHHHTCEEECTTBCHH------------------HHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEcCCCCHH------------------HHHHHHHhcCCCEEEeCCChhhcCCCCCCCCHHHHHHH
Confidence 346778888899998865 65432 12222222333444444 446789999999
Q ss_pred HhcCCeEEECccchhhc-cCCccHHHHHH--------cCC-cEEEccCCCCC--CC----CCCHHHHHHHHHHHhccccc
Q 012333 294 SRAGVKVSHCPASAMRM-LGFAPIKEMLH--------ADI-CVSLGTDGAPS--NN----RMSIVDEMYLASLINKGREV 357 (466)
Q Consensus 294 ~~~g~~~~~~p~~~~~~-~~~~~~~~~~~--------~gi-~~~~gsD~~~~--~~----~~~~~~~~~~~~~~~~~~~~ 357 (466)
++.|..+-++....+-. .....+..+.+ .|+ .|++|||.-.. .+ ...-+..+.... ..
T Consensus 241 a~~GGvigv~~~~~fl~~~~~~t~~~~~~hi~hi~~~~G~dhVgiGsDfdG~~~~p~gl~d~~~~p~l~~~L-~~----- 314 (369)
T 1itu_A 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAEL-LR----- 314 (369)
T ss_dssp HHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTTSCSCCCBTCSSTTCHHHHHHHH-HH-----
T ss_pred HHcCCeEEEEechhhcCCCCCCCHHHHHHHHHHHHHhhCCCeEEECCCCCCCCCCCCCCCCHHHHHHHHHHH-HH-----
Confidence 99998877775543321 12222333222 255 49999997321 11 122233332222 21
Q ss_pred ccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 012333 358 FANGTTDPAALPAETVLRMATINGAKSVL 386 (466)
Q Consensus 358 ~~~~~~~~~~ls~~~al~~~T~~~A~~lg 386 (466)
.|+|.+++-+.+-.|..+.+.
T Consensus 315 --------~G~se~~i~ki~g~N~lRvl~ 335 (369)
T 1itu_A 315 --------RNWTEAEVKGALADNLLRVFE 335 (369)
T ss_dssp --------TTCCHHHHHHHHTHHHHHHHH
T ss_pred --------cCCCHHHHHHHHhHhHHHHHH
Confidence 258999999999999988886
|
| >2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.40 E-value=32 Score=31.04 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCccce-eccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEee---------cCChhhHHHH
Q 012333 224 LLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV---------WVNHTEIGLL 293 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~---------~~~~~~~~~~ 293 (466)
.=+++++...+.|+.+.+ |+.+ ....+.++....+.+++|.. .+++++++.+
T Consensus 140 ~G~~vV~emnrlGmivDlSH~s~------------------~~~~dvl~~s~~Pvi~SHsn~~al~~h~RNl~De~iral 201 (325)
T 2i5g_A 140 FGREIVAEMNRVGIMCDLSHVGS------------------KTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFI 201 (325)
T ss_dssp HHHHHHHHHHHHTCEEECTTBCH------------------HHHHHHHHHCSSCCEEEEECBTTTCCCTTSBCHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEcCcCCH------------------HHHHHHHHHhCCCEEEeCCCccccCCCCCCCCHHHHHHH
Confidence 346677777888887755 5432 22333333344556677753 4678999999
Q ss_pred HhcCCeEEECccchhhc-cCCccHHHH-------HH-cCC-cEEEccCCC
Q 012333 294 SRAGVKVSHCPASAMRM-LGFAPIKEM-------LH-ADI-CVSLGTDGA 333 (466)
Q Consensus 294 ~~~g~~~~~~p~~~~~~-~~~~~~~~~-------~~-~gi-~~~~gsD~~ 333 (466)
++.|..+-++..+.+-. .....+..+ .+ .|+ .+.+|||.+
T Consensus 202 a~~GGvigv~~~~~fl~~~~~~t~~~~~~hi~~i~~~~G~dhVgiGsDf~ 251 (325)
T 2i5g_A 202 ADHGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFT 251 (325)
T ss_dssp HHTTCEEEECCCGGGSSSGGGCBHHHHHHHHHHHHHHHCTTSEEECCCBC
T ss_pred HHcCCeEEEeecchhcCCCCCCCHHHHHHHHHHHHHhcCCceEEECCcCc
Confidence 99998877665443321 111122222 22 254 599999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 466 | ||||
| d2uz9a2 | 313 | c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo | 4e-50 | |
| d1p1ma2 | 281 | c.1.9.9 (A:50-330) Hypothetical protein TM0936, pr | 3e-46 | |
| d2i9ua2 | 310 | c.1.9.9 (A:67-376) Guanine deaminase {Clostridium | 1e-43 | |
| d2ooda2 | 325 | c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobi | 1e-39 | |
| d2paja2 | 336 | c.1.9.9 (A:70-405) Hypothetical protein GOS_194309 | 1e-39 | |
| d2imra2 | 308 | c.1.9.16 (A:91-398) Hypothetical protein DR0824 {D | 4e-31 | |
| d1ra0a2 | 320 | c.1.9.5 (A:56-375) Cytosine deaminase catalytic do | 1e-25 | |
| d2p9ba2 | 324 | c.1.9.17 (A:71-394) Uncharacterized protein BL1453 | 3e-20 | |
| d2puza2 | 301 | c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobac | 4e-19 | |
| d2q09a2 | 301 | c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propa | 3e-18 | |
| d2paja1 | 139 | b.92.1.4 (A:10-69,A:406-484) Hypothetical protein | 7e-16 | |
| d2bb0a2 | 300 | c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillu | 4e-15 | |
| d2bb0a1 | 113 | b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase | 3e-14 | |
| d2i9ua1 | 109 | b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clo | 2e-13 | |
| d2qs8a2 | 310 | c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromon | 2e-12 | |
| d1p1ma1 | 123 | b.92.1.4 (A:1-49,A:331-404) Hypothetical protein T | 2e-11 | |
| d3be7a2 | 303 | c.1.9.18 (A:57-359) Zn-dependent arginine carboxyp | 3e-11 | |
| d2r8ca2 | 311 | c.1.9.18 (A:58-368) Uncharacterized protein EAJ561 | 3e-10 | |
| d1yrra2 | 297 | c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphat | 5e-08 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 2e-07 | |
| d2puza1 | 103 | b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas | 4e-07 | |
| d2puza1 | 103 | b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas | 9e-04 | |
| d2uz9a1 | 131 | b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Hum | 2e-06 | |
| d1m7ja2 | 61 | b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydro | 3e-06 | |
| d2r8ca1 | 102 | b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei | 5e-06 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 8e-06 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 8e-06 | |
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 2e-05 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 4e-05 | |
| d2amxa1 | 357 | c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plas | 3e-04 | |
| d3be7a1 | 95 | b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine | 8e-04 | |
| d2q09a1 | 103 | b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolon | 9e-04 | |
| d1m7ja1 | 55 | b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas | 0.001 |
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Score = 171 bits (432), Expect = 4e-50
Identities = 71/319 (22%), Positives = 139/319 (43%), Gaps = 11/319 (3%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PG V+TH+H SQ G + D+ L+ WL +P E D + + +G
Sbjct: 1 PGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNG 60
Query: 139 VTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKE 195
T H +A + G RA + + MD + TT++ I+ +
Sbjct: 61 TTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLND--TFPEYKETTEESIKETER 118
Query: 196 LYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255
++ R++ R ++ ++ L+ E ++A+ I H++E E + V +
Sbjct: 119 FVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKN 178
Query: 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFA 314
+ DK L N + AH +++ E+ + G ++HCP S + + GF
Sbjct: 179 LYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFL 238
Query: 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374
+ E+L ++ + LGTD A S++D + A +++ + + +L + V
Sbjct: 239 NVLEVLKHEVKIGLGTDVA-GGYSYSMLDAIRRAVMVSNILLI---NKVNEKSLTLKEVF 294
Query: 375 RMATINGAKSVLWDNDIGS 393
R+AT+ G++++ D +IG+
Sbjct: 295 RLATLGGSQALGLDGEIGN 313
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 159 bits (403), Expect = 3e-46
Identities = 84/310 (27%), Positives = 140/310 (45%), Gaps = 31/310 (10%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L +E+ G+
Sbjct: 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIA 60
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200
F + H +AKAV G+RA L + +D D +
Sbjct: 61 GFVD-MYFHEEWIAKAVRDFGMRALLTRGLVDSN----------GDDGGRLEENLKLYNE 109
Query: 201 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260
+ +GRI + FG ++ L D A+ + +H+ E E + D
Sbjct: 110 WNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLED----- 164
Query: 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEM 319
+ I + ++AH V + G+L VSH PAS +++ G AP++ M
Sbjct: 165 ------ILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRM 218
Query: 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 379
+ + V+LGTDGA SNN +++ EM LASL+ K + +P L T L+M T
Sbjct: 219 IEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRNLDVNTCLKMVTY 270
Query: 380 NGAKSVLWDN 389
+GA+++ + +
Sbjct: 271 DGAQAMGFKS 280
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Score = 153 bits (387), Expect = 1e-43
Identities = 71/320 (22%), Positives = 126/320 (39%), Gaps = 16/320 (5%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PG + H H SQ GI D +L+ WL++ +P E+ D T I +LI +G
Sbjct: 1 PGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNG 60
Query: 139 VTC---FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKE 195
T FA E+ + G+ A + + MD + + +E
Sbjct: 61 TTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYN---CPDYLTENYITSLNDTEE 117
Query: 196 LYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255
+ K+ ++ ++ R + + ++ L+ ++ +++ + H++E E VV
Sbjct: 118 IILKYKDKSN-IVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKS 176
Query: 256 TRKVDHGTVTFLDKIE-FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GF 313
K + DK F L AH + + EI L+ R V + HCP S + G
Sbjct: 177 LHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGM 236
Query: 314 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 373
P+++ L+ I V LG+D + + S+ + A +K + + L
Sbjct: 237 MPVRKYLNLGINVVLGSDISAGHT-CSLFKVIAYAIQNSKIKWQESGK--KDMFLSTSEA 293
Query: 374 LRMATINGAKSVLWDNDIGS 393
MAT G +GS
Sbjct: 294 FYMATKKGGSFF---GKVGS 310
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Score = 143 bits (360), Expect = 1e-39
Identities = 60/329 (18%), Positives = 117/329 (35%), Gaps = 19/329 (5%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PGF++ H+H Q G + L+ WL I+P E + + + + L+ +G
Sbjct: 1 PGFIDGHIHLPQTRVLGAYGE-QLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAG 59
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198
T + E R V + + + + + T ++ + K L A
Sbjct: 60 TTTCQAFTSSSPVATEELFEEASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIA 119
Query: 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTR 257
++H GR R A+ LL + + E ++ H++E P E V+
Sbjct: 120 QYHD--KGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEH 177
Query: 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIK 317
+ +K + + H V++++ E +S+ G V CP S + +
Sbjct: 178 PDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFLGSGLFRL 237
Query: 318 EML---HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG----------TTD 364
+ +S GTD N S++ + A + +G +
Sbjct: 238 GRATDPEHRVKMSFGTDVGGGNR-FSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAE 296
Query: 365 PAALPAETVLRMATINGAKSVLWDNDIGS 393
L T+ GA+ + D+ +G+
Sbjct: 297 RNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Score = 143 bits (360), Expect = 1e-39
Identities = 80/336 (23%), Positives = 132/336 (39%), Gaps = 24/336 (7%)
Query: 80 PGFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
P +VNTH H Q L KG D L WL + + + E ++ + IEL S
Sbjct: 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARS 60
Query: 138 GVTCFAEAGGQH--------VSEMAKAVELLGLRACLVQSTMDCG----EGLPASWAVRT 185
G A+ + + + + E LGLR L++ LP + T
Sbjct: 61 GCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPET 120
Query: 186 TDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245
D + + L A++H A+ +R + + A + G+ MH
Sbjct: 121 LDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHSHL 180
Query: 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 305
V F + ++L +++ AH V V+ EI LL++ G V+HCP
Sbjct: 181 SETVGYQDSAYSMYGKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQ 240
Query: 306 SAMRMLG-FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE-------- 356
S R+ P++EM A + VS+G DGA SN ++ E+++ L + R
Sbjct: 241 SNGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAY 300
Query: 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
+ A V+ T GA+ + D ++G
Sbjct: 301 RGGSFEGGAGAASIAEVIHWGTAGGARVMGLD-EVG 335
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Score = 119 bits (299), Expect = 4e-31
Identities = 48/330 (14%), Positives = 89/330 (26%), Gaps = 53/330 (16%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
P VN H H + A W+ + + + L G
Sbjct: 1 PPPVNAHTHLDMSAYEFQALP--YFQWIPEVVIRGRH----LRGVAAAQAGADTLTRLGA 54
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199
+ M + L L ++ D+ + + +
Sbjct: 55 GGVGDIVW-APEVMDALLAREDLSGTLYFEVLNPFPD--------KADEVFAAARTHLER 105
Query: 200 HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH----------------- 242
+R+ + RL+ D A + +H
Sbjct: 106 WRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGP 165
Query: 243 -------VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 295
+V+ D V +LD++ L H V V +I ++R
Sbjct: 166 LWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVAR 225
Query: 296 AG-VKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 354
AG V+ ++ G A + V+LGTD S +++ +E+ A + G
Sbjct: 226 AGCAVVTCPRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQLYPG 285
Query: 355 REVFANGTTDPAALPAETVLRMATINGAKS 384
L ++R A G +
Sbjct: 286 -------------LDPRVLVRAAVKGGQRV 302
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Score = 104 bits (259), Expect = 1e-25
Identities = 42/337 (12%), Positives = 98/337 (29%), Gaps = 35/337 (10%)
Query: 82 FVNTHVHTSQQLAKGIAD---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
FV H+H G + L + +R ++ +T +D I +G
Sbjct: 2 FVEPHIHLDTTQTAGQPNWNQSGTLFEGI-ERWAERKALLTHDDVKQRAWQTLKWQIANG 60
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198
+ + + +L ++ + P + + + L
Sbjct: 61 IQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNG-----EALLE 115
Query: 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258
+ + L +T +A+++ I +H EI E ++T
Sbjct: 116 EALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVA 175
Query: 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-------- 310
++ + ++ LL +G+ P + +
Sbjct: 176 ALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYP 235
Query: 311 --LGFAPIKEMLHADICVSLGTD----GAPSNNRMSIVDEMYLASLINKGREVFANGTTD 364
G +KEML + I V G D +++ +++ + +
Sbjct: 236 KRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQ----------L 285
Query: 365 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 401
L + T + A+++ + + AG A+
Sbjct: 286 MGYGQINDGLNLITHHSARTLNLQD--YGIAAGNSAN 320
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 89.0 bits (218), Expect = 3e-20
Identities = 36/339 (10%), Positives = 79/339 (23%), Gaps = 40/339 (11%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H Q + S + + + L+ SGV
Sbjct: 1 PGLINAHTHLFSQGKPL-NPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGV 59
Query: 140 TCFAEAGGQH--------VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191
T G + + + L + + + + + T ++
Sbjct: 60 TTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEART 119
Query: 192 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-------------TG 238
+ + +A Q + + M
Sbjct: 120 AVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQS 179
Query: 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298
+ + +D + + + LL +
Sbjct: 180 PEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNALRGYSALIPTLSAGLPLTLLGQDVT 239
Query: 299 KVSHCPASAMRMLG---FAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKG 354
++ + + + ++ A + + +GTD G + + E+ L
Sbjct: 240 GITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELL------ 293
Query: 355 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393
A L AT A + D + GS
Sbjct: 294 --------VAYAGFSPAEALHAATAVNASILGVDAETGS 324
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 85.4 bits (209), Expect = 4e-19
Identities = 47/333 (14%), Positives = 107/333 (32%), Gaps = 51/333 (15%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIW----------PYESNMTEEDSYISTLL 129
P ++ H H + + ++ L ++ I +++E L
Sbjct: 1 PALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALP 60
Query: 130 CGIELIHSGVT------CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAV 183
L+ GV+ + + + A L LR + ++ PA +
Sbjct: 61 RLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKG 120
Query: 184 RTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 243
R D K H +G G + + + + + A++ + +H
Sbjct: 121 RNADYITDVVLPGLEKAHA--EGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPVKLHA 178
Query: 244 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303
++ ++ N L + H +++ T L++AG
Sbjct: 179 EQLSNLGG----------------AELAASYNALSADHLEYLDETGAKALAKAGTVAVLL 222
Query: 304 PASAMRML--GFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINKGREVFAN 360
P + + P++ + A ++L TD P ++ S++ M + + + +
Sbjct: 223 PGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLFR------- 275
Query: 361 GTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393
+ E L T N AK++ + G+
Sbjct: 276 -------MTVEECLTATTRNAAKALGLLAETGT 301
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Score = 82.7 bits (202), Expect = 3e-18
Identities = 42/333 (12%), Positives = 97/333 (29%), Gaps = 53/333 (15%)
Query: 80 PGFVNTHVH-----------TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTL 128
PG ++ H H +Q A+ + + +E+ + L
Sbjct: 1 PGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIISTV-RATRAASEDQLFELAL 59
Query: 129 LCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACL------VQSTMDCGEGLPASWA 182
LI GVT G ++ + L R V++T+ +P +
Sbjct: 60 PRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEALPIRVKTTLLAAHAVPPEYR 119
Query: 183 VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 242
+E+ A G + + + + A ++ + H
Sbjct: 120 DDPDSWVETICQEIIPAAAEA--GLADAVDVFCEHIGFSLAQTEQVYLAADQYGLAVKGH 177
Query: 243 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302
+ ++ + L H +++ I L+ GV +
Sbjct: 178 MDQLSNLG----------------GSTLAANFGALSVDHLEYLDPEGIQALAHRGVVATL 221
Query: 303 CPASAMRMLG--FAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINKGREVFA 359
P + + P+ + A + +++ +D P + +S+ M +A +
Sbjct: 222 LPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLFG------ 275
Query: 360 NGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
L + T + A+++ +G
Sbjct: 276 --------LTPVEAMAGVTRHAARALGEQEQLG 300
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} Length = 139 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Score = 72.0 bits (176), Expect = 7e-16
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 20/133 (15%)
Query: 319 MLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377
++ + G G + R+ D + I + + +A
Sbjct: 4 LIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTI-------------------DAIGALA 44
Query: 378 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCN 437
G V + + + G AD+ V +HD V +V+++
Sbjct: 45 PRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSA 104
Query: 438 GQWVMKNKKILLL 450
G+ V+ + I +
Sbjct: 105 GKRVVVDDLIEGV 117
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Length = 300 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Score = 73.5 bits (178), Expect = 4e-15
Identities = 49/331 (14%), Positives = 90/331 (27%), Gaps = 50/331 (15%)
Query: 80 PGFVNTHVH----------TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLL 129
PG V+ H H + +L D+ +EE+
Sbjct: 1 PGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHF 60
Query: 130 CGIELIHSGVTCFAEAGG-----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVR 184
++ G T G + + + + L + + G
Sbjct: 61 HLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVDLVSTFMGAHAIPPEYQN 120
Query: 185 TTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 244
DD + L + F + + + F IH
Sbjct: 121 DPDDFLDQMLSLLPEIKEQELASFADIFTETGVFTVSQSRRYLQKAAEAGFGLKIHADEI 180
Query: 245 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 304
+ ++ + V H V + I L+ AG P
Sbjct: 181 DPLGGAELAGKLKAVSA------------------DHLVGTSDEGIKKLAEAGTIAVLLP 222
Query: 305 ASAMRML--GFAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANG 361
+ + +A + M+ +CVSL TD S+ +I M +A+L K
Sbjct: 223 GTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALHLK-------- 274
Query: 362 TTDPAALPAETVLRMATINGAKSVLWDNDIG 392
+ AE + T+N A ++ + G
Sbjct: 275 ------MTAEEIWHAVTVNAAYAIGKGEEAG 299
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Score = 66.6 bits (162), Expect = 3e-14
Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378
+++ +++ + G + M + + E G + + A A
Sbjct: 7 LINIGQLLTMESSGPRAGKSMQDLHVI----------EDAVVGIHEQKIVFAGQKGAEAG 56
Query: 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 438
+ + + +L+AG+ AD+V+ ++ +P Y +V VM NG
Sbjct: 57 YEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMYIP---------YHYGVNHVHQVMKNG 107
Query: 439 QWVM 442
V+
Sbjct: 108 TIVV 111
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Score = 64.1 bits (156), Expect = 2e-13
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 351 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 410
+ V +G + G + + N+I E G D +V++ +
Sbjct: 21 MKDSYIVVIDGKIASVSS-----NLPDKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNL 75
Query: 411 PM--VPVHDRITSLVYCMRTENVVSVMCNGQWV 441
+ +R+ +Y N++ G +
Sbjct: 76 YPEDYDLTERLERFIYLGDDRNIMKRYVCGNEI 108
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Score = 65.8 bits (158), Expect = 2e-12
Identities = 32/341 (9%), Positives = 84/341 (24%), Gaps = 60/341 (17%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G ++ HVH Q+ + + + + SG T
Sbjct: 1 GLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQH---------------AYVTFKSGFT 45
Query: 141 CFAEAGGQHVSEMAKAVELLGLR---------------------ACLVQSTMDCGEGLPA 179
+ G + ++ + + ++ D +P
Sbjct: 46 TVRQVGDSGLVAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDYDYPVPE 105
Query: 180 SWAVRTTDDCIQSQKELYAKHHHAADGRI--RIWFGIRQIMNATDRLLLETRDMAREFKT 237
V + + ++ Y + + + N ++
Sbjct: 106 QGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDY 165
Query: 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 297
G+ + V E VD +E + + + + ++
Sbjct: 166 GMWVAVHAHGAEGMKRAIKAGVDSIEHGTFMDLEAMDLMIENGTYYVPTISAGEFVAEKS 225
Query: 298 VKVSHCPAS------AMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLI 351
+ P ++ ++ + ++ GTD + + E
Sbjct: 226 KIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGVQKHG-TNWKEFVYMVE- 283
Query: 352 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
+PA ++ AT+ AK + ++ +G
Sbjct: 284 --------------NGMPAMKAIQSATMETAKLLRIEDKLG 310
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Score = 59.2 bits (143), Expect = 2e-11
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 349 SLINKGREVFANGTTDP--AALPAETVLRMATINGAKSVLWD----NDIGSLEAGKKADM 402
LI K +++P A+ E + G V D + +E G AD+
Sbjct: 6 CLILKDF------SSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADL 59
Query: 403 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 448
VV+D M PV + LV+ V + M G+W+ + +
Sbjct: 60 VVIDLDLPEMFPVQNIKNHLVHAFSG-EVFATMVAGKWIYFDGEYP 104
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Score = 62.0 bits (148), Expect = 3e-11
Identities = 36/336 (10%), Positives = 84/336 (25%), Gaps = 57/336 (16%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G +++HVH +KG + + ++ + + +G T
Sbjct: 1 GLMDSHVHIVGNDSKG----------------EESIADSSHMGTVWGVVNAEKTLMAGFT 44
Query: 141 CFAEAGGQH----------------VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVR 184
G + M + LG+ + E +S V
Sbjct: 45 TVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVV 104
Query: 185 TTDD-----CIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239
+ +++K A G + T + D A +
Sbjct: 105 DSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKV 164
Query: 240 HM--HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 297
H + ++NN + + ++V+ +G ++AG
Sbjct: 165 AAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAG 224
Query: 298 VKVSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 356
++ + ++ GTD ++ +
Sbjct: 225 IREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHG-DNAKQFAYMVE------ 277
Query: 357 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
+ ++ +TI A + +IG
Sbjct: 278 ---------WGMTPLEAIQASTIKTATLFGIE-NIG 303
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 58.9 bits (140), Expect = 3e-10
Identities = 39/344 (11%), Positives = 72/344 (20%), Gaps = 65/344 (18%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G ++ HVH I ++ + L + + ++ G T
Sbjct: 1 GLIDLHVHVV-----AIEFNLPRVATL-----------PNVLVTLRAVPIMRAMLRRGFT 44
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASW------------------- 181
+AGG L L S + +
Sbjct: 45 TVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVR 104
Query: 182 ------------AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 229
VR K + + + +
Sbjct: 105 VGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAE 164
Query: 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289
R H + + ++ T+
Sbjct: 165 AQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDAL 224
Query: 290 IGLLSRAGVKVSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 348
+ G+ A G I+ M A + + GTD R DE +
Sbjct: 225 ASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQR-LQSDEFRIL 283
Query: 349 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
+ L V+ ATI A+ + + +G
Sbjct: 284 A----------------EVLSPAEVIASATIVSAEVLGMQDKLG 311
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (123), Expect = 5e-08
Identities = 32/332 (9%), Positives = 77/332 (23%), Gaps = 55/332 (16%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
GF++ ++ V M + SG T
Sbjct: 1 GFIDVQLN--------GCGGVQFNDTAEAVSVETLEIMQKA------------NEKSGCT 40
Query: 141 CF-AEAGGQHVSEMAKAVELLGLR-----ACLVQSTMDCGEGLPASWAVRTTDDCIQSQK 194
+ M + V ++ + ++ + +
Sbjct: 41 NYLPTLITTSDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDA 100
Query: 195 ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM--------HVAEI 246
L AD ++ + L + + +
Sbjct: 101 ALVDFLCENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITF 160
Query: 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 306
M + E + A + V++ I R
Sbjct: 161 ATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTD 220
Query: 307 AMRMLGF------APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 360
A G K + + + S + +++++ + +L+
Sbjct: 221 ATAPAGANIEQFIFAGKTIYYRNGLCVDENG-TLSGSSLTMIEGV--RNLVEHCG----- 272
Query: 361 GTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
+ + VLRMAT+ A+++ + +G
Sbjct: 273 -------IALDEVLRMATLYPARAIGVEKRLG 297
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILL 79
L +A IVT DK + RN + V D RI+ + S + +D +I++
Sbjct: 6 FALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIET---SIPAEYHYLDGTGKIVM 62
Query: 80 PGFVNTHVH 88
+
Sbjct: 63 LEVGKSADL 71
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 46.1 bits (109), Expect = 4e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 333 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392
A N M + + A + + A E+ L ++
Sbjct: 11 ATLNPAMDGIGAVENAVIAVRNG--------RIAFAGPESDLPDDLSTADETTDCGGRWI 62
Query: 393 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
+LEAGK AD + D + Y + + + + GQ V
Sbjct: 63 TLEAGKSADFAIWDIERPAELV---------YRIGFNPLHARIFKGQKV 102
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.5 bits (84), Expect = 9e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 19 STMILHNAVIVTMDKESRVF---RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS 75
+T + NA + T++ N + V RI G +D+ S AD+ D
Sbjct: 1 ATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLST-ADETTDCGG 59
Query: 76 QILLPGFVNTHVH 88
+ + +
Sbjct: 60 RWITLEAGKSADF 72
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (106), Expect = 2e-06
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 15/97 (15%)
Query: 361 GTTDPAALPAETVLRMATINGAK----SVLWDNDIGSLEAGKKADMVVVDPFSWPMV--- 413
A ++A K L ++ E GK+ D ++++P +
Sbjct: 32 SGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMFEVGKEFDAILINPKASDSPIDL 91
Query: 414 --------PVHDRITSLVYCMRTENVVSVMCNGQWVM 442
I +Y N+ V G+ V+
Sbjct: 92 FYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVV 128
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 61 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 42.4 bits (100), Expect = 3e-06
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 394 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRG 453
++ G AD+VV DP + V D T R + SV NG V +++ G
Sbjct: 2 VQPGYYADLVVFDPAT-----VADSATFEHPTERAAGIHSVYVNGAAVWEDQSFTGQHAG 56
Query: 454 RL 455
R+
Sbjct: 57 RV 58
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 43.1 bits (101), Expect = 5e-06
Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
+T + N ++ D + + + + I+ + +ID++ + +
Sbjct: 1 TTFLFRNGALLDPDHP-DLLQGFEILIEDGFIREVSDKPIKSS-----NAHVIDVKGKTI 54
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMT 105
+P V + VD +
Sbjct: 55 MPRIVPGAHADVLVVDGNPLKSVDCLL 81
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 43.0 bits (101), Expect = 8e-06
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+ +VT V + +R+ AIG + + ID ++P
Sbjct: 2 KWIRGGTVVTAADT----YQADVLIEGERVVAIGHQLSV------NGAEEIDATGCYVIP 51
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
V + ++ P+E M +S L G ++
Sbjct: 52 IAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFE-GMEVYGEVVSVLSRGSFVVRDKQF 110
Query: 141 CFAEAGGQHV 150
GQ++
Sbjct: 111 VGQAGSGQYI 120
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 41.5 bits (97), Expect = 2e-05
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
++ +L A + + V V +I A+ + + ++DL Q
Sbjct: 6 AAGFTLLQGAHLYAPED----RGICDVLVANGKIIAVASN---IPSDIVPNCTVVDLSGQ 58
Query: 77 ILLPGFVNTHVH 88
IL P + +
Sbjct: 59 ILCPEILPGNDA 70
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (93), Expect = 4e-05
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 8/66 (12%)
Query: 23 LHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF 82
L I T + + V + IK++ + L IL P
Sbjct: 4 LTQGRIFTGHE---FLDDHAVVIADGLIKSVCP-----VAELPPEIEQRSLNGAILSPTL 55
Query: 83 VNTHVH 88
V
Sbjct: 56 AAGKVA 61
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 25/220 (11%)
Query: 153 MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWF 212
+AK + + +V +S + ++ + + +I +
Sbjct: 102 LAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVAL 161
Query: 213 GIRQIMNATDRLLLETRDMAREFKTGIHMH---VAEIPYENQVVMDTRKVDHGTVTFLD- 268
+ + D A + K EI ++ + DHG +
Sbjct: 162 ICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKDVYHSVRDHGLHLTVHA 221
Query: 269 -------KIEFLQNNLLSAHTVWVNHTE--------IGLLSRAGVKVSHCPASAMRMLGF 313
+ L + + + H I L+ + + + CP S + +
Sbjct: 222 GEDATLPNLNTLYTAINILNVERIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNV 281
Query: 314 A-----PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 348
PI+++ A + VS+ +D P +I D
Sbjct: 282 KSMDTHPIRKLYDAGVKVSVNSDD-PGMFLSNINDNYEKL 320
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Score = 36.3 bits (84), Expect = 8e-04
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 15/76 (19%)
Query: 372 TVLRMATINGAKSVLWDNDI--GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 429
+ A + + I ++ G AD+V V P+ + I +L E
Sbjct: 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVI-----ENPLAN-IRTL------E 79
Query: 430 NVVSVMCNGQWVMKNK 445
V VM G+ V K +
Sbjct: 80 EVAFVMKEGK-VYKRE 94
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Score = 36.7 bits (85), Expect = 9e-04
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 388 DNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441
+ +L G AD +V W L Y + + +VS + NG+
Sbjct: 57 KGKLVTLRVGMLADFLV-----WNC----GHPAELSYLIGVDQLVSRVVNGEET 101
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 34.7 bits (80), Expect = 0.001
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
IL ++ + R V V DRI A+G + A + ID+ +++ P
Sbjct: 4 YILSGGTVIDGT--NAPGRLADVGVRGDRIAAVGDLSAS------SARRRIDVAGKVVSP 55
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 100.0 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 100.0 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.96 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.94 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.91 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.87 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.83 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.82 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.8 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.69 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.67 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.66 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.65 | |
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.62 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.6 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 99.59 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.59 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.59 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 99.57 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.57 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.54 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.53 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.53 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.53 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.52 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.49 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.49 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.47 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.44 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.43 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.43 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.42 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.42 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.38 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.37 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.36 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.33 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.33 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.32 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.26 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.24 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.21 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.19 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.19 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.15 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.15 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 99.08 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 99.07 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.05 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 99.03 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.01 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 98.95 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.92 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 98.89 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 98.85 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 98.85 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.75 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.66 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.61 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 98.58 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.49 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.47 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.37 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 98.36 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 98.34 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.26 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 98.24 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.23 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.19 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 98.19 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 98.17 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 98.06 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 97.84 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.52 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.45 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 97.01 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.72 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 96.46 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 96.23 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 96.07 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 96.05 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 95.94 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 95.84 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 95.8 | |
| d2a3la1 | 628 | AMP deaminase (AMPD), catalytic domain {Thale cres | 95.67 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 95.48 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 93.81 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 93.56 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 91.89 | |
| d1v77a_ | 202 | Ribonuclease P protein component 3, Rnp3 {Pyrococc | 86.46 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 83.25 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 82.93 |
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=262.33 Aligned_cols=308 Identities=23% Similarity=0.363 Sum_probs=254.1
Q ss_pred ecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHH-HHHHHHHHHHHHhcCceeeeecCccCH---HHHHH
Q 012333 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGVTCFAEAGGQHV---SEMAK 155 (466)
Q Consensus 80 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~GvTtv~~~~~~~~---~~~~~ 155 (466)
|||||+|+|++++.+++...+.++.+|+.+..|+.+..+...+. +......+.++++.|+|++.+++.... ....+
T Consensus 1 PGfIdaH~Hl~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~tt~~~~~~~~~~~~~~~~~ 80 (313)
T d2uz9a2 1 PGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLAD 80 (313)
T ss_dssp ECEEEEEEEGGGGGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHH
T ss_pred CCCCcHhhChhhhhhhhccCCCCHHHHHHHhHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCeEeeecccccccchhHHHH
Confidence 99999999999999999989999999999999988777666554 344455778899999999998775443 34455
Q ss_pred HHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 012333 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (466)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (466)
+....|+|..............+. ........+....++++.+.....+.++....++..+..+++.++++.+.+++.
T Consensus 81 a~~~~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~l~~~~~~a~~~ 158 (313)
T d2uz9a2 81 ITDKFGQRAFVGKVCMDLNDTFPE--YKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTR 158 (313)
T ss_dssp HHHHHTCEEEEECEECSCCSSSTT--SCCCHHHHHHHHHHHHHHHHHHTCSSEEEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcccccceeccCCcccch--hhhhHHHHHHHHHHHHHHhhcccccceeEEEeccccccccHHHHHHHHHHhhcc
Confidence 677889998876665543322221 223455667777788888777778899999999999999999999999999999
Q ss_pred CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCc
Q 012333 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFA 314 (466)
Q Consensus 236 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~ 314 (466)
++++++|+.+...+.................++..+.++.+..+.|+.++++++++++++.|+.+++||.+++.. .+.+
T Consensus 159 g~~~~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~e~~~l~~~g~~~~~~P~~~~~~~~~~~ 238 (313)
T d2uz9a2 159 DLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFL 238 (313)
T ss_dssp TCEEEEEESCSHHHHHHHHHHSTTSSSHHHHHHHTTCCSTTEEEEECTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCCC
T ss_pred ccceeeehhcchhHHHHHHHhhcccCChHHHHHHcCCcCCcceEEeeeecchhHHHHHhhhcccccccchhhhhcccccc
Confidence 999999999988887777766666777888999999999999999999999999999999999999999999888 6789
Q ss_pred cHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 315 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 315 ~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
+++++++.|+++++|||..+ ++..+++.+|+.+..+.+..... ...+.++|++|+|+++|.|+|++||+++++||
T Consensus 239 ~v~~l~~~Gv~valGTD~~~-~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~e~l~~AT~ngA~aLg~~~~iGS 313 (313)
T d2uz9a2 239 NVLEVLKHEVKIGLGTDVAG-GYSYSMLDAIRRAVMVSNILLIN---KVNEKSLTLKEVFRLATLGGSQALGLDGEIGN 313 (313)
T ss_dssp CHHHHHHTTCEEEECCCTTT-SCCCCHHHHHHHHHHHHHHHHHT---TSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred chhhhhccCceEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHhhc---CCCCCCCCHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 99999999999999999854 35679999999887765432111 23345699999999999999999999998986
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.2e-33 Score=258.29 Aligned_cols=304 Identities=23% Similarity=0.292 Sum_probs=247.1
Q ss_pred ecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHH-HHHHHHHHHhcCceeeeecCccCH---HHHHH
Q 012333 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS-TLLCGIELIHSGVTCFAEAGGQHV---SEMAK 155 (466)
Q Consensus 80 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~GvTtv~~~~~~~~---~~~~~ 155 (466)
|||||+|+|+.++.+++...+.++.+|+....|+.+..+.+++.+.. ....+.+++++|||++.++..... ....+
T Consensus 1 PG~vdaH~H~~~~~~rg~~~~~~l~~wl~~~~~p~~~~~~~~d~~~~~~~~~~~e~l~~GtTtv~d~~~~~~~~~~~~~~ 80 (310)
T d2i9ua2 1 PGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFN 80 (310)
T ss_dssp ECEEEEEEEGGGGGGTTCCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHH
T ss_pred CCCEehhhChhhhhhhhccCCCCHHHHHHHhHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCcceeeeeccchhhhHHHHH
Confidence 99999999999999999999999999999999988777666665444 445678899999999999765443 34567
Q ss_pred HHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 012333 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (466)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (466)
+..+.|+|........+... ..+........+....+.++++... ...+...++++..+..+++.++.+.+.++++
T Consensus 81 a~~~~gir~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~e~~~~~~~~a~~~ 156 (310)
T d2i9ua2 81 MLIKSGIGAYVGKVNMDYNC---PDYLTENYITSLNDTEEIILKYKDK-SNIVKPIITPRFVPSCSNELMDGLGKLSYKY 156 (310)
T ss_dssp HHHHHTCEEEEECEECCSSC---CTTSCCCHHHHHHHHHHHHHHHTTT-CSSEEECBEECCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHhCccccccceeccCCc---cccchhhHHHHHHHHHHHHHHhhcc-ccccceeecccCCCccCHHHHHHHHHHhhcc
Confidence 78889999988777765432 1222334555566667777776654 3567887899999999999999999999999
Q ss_pred CCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCC-CeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCC
Q 012333 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN-NLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 313 (466)
Q Consensus 236 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~ 313 (466)
++++++|+.++..+.......++......+.+...+.+.. +.++.|+.++++++++++++.|+.+++||.+++++ .+.
T Consensus 157 ~~~~~~H~~E~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~i~~la~~g~~vv~cP~sn~~l~~g~ 236 (310)
T d2i9ua2 157 RLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGM 236 (310)
T ss_dssp TCCEEEEESCCHHHHHHHHHHCTTCSSHHHHHHHTTCSSSSCEEEEECCSCCHHHHHHHHHTTCEEEECHHHHHHTTCCC
T ss_pred ccceeehhccchHHHHHHHHHhcccccHHHHHHhcCCccCCceeeeeeeeechhHHHHHHhcCCEEEEeecccccccCCc
Confidence 9999999999998888888877777667788888888765 47789999999999999999999999999999987 678
Q ss_pred ccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 314 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 314 ~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
+|++++++.|++|++|||..+.+ +.+++.+|+.+...++...... ......++++|+|+++|.++|+++| ++||
T Consensus 237 ~pv~~l~~~Gv~v~lGTD~~~~~-~~dm~~~m~~a~~~~~~~~~~~--~~~~~~l~~~e~l~~aT~~gA~alG---riGS 310 (310)
T d2i9ua2 237 MPVRKYLNLGINVVLGSDISAGH-TCSLFKVIAYAIQNSKIKWQES--GKKDMFLSTSEAFYMATKKGGSFFG---KVGS 310 (310)
T ss_dssp CCHHHHHHTTCEEEECCCBTTBC-CSCHHHHHHHHHHHHHHHHHHT--TSCSCCCCHHHHHHHHTHHHHTTTS---SCSS
T ss_pred ccccchhccCceEEEecCCCCCC-CCCHHHHHHHHHHHHHHhhccc--cCCCCCCCHHHHHHHHHHHHHHHhc---CCCC
Confidence 99999999999999999987654 5799999999887765322111 1233459999999999999999998 4675
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-33 Score=253.76 Aligned_cols=278 Identities=30% Similarity=0.498 Sum_probs=237.9
Q ss_pred cccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHHh
Q 012333 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160 (466)
Q Consensus 81 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~ 160 (466)
||||+|+|+.++.+++...+.++.+|+....|+.+..+++++.+........+++++||||+.|+. .......++..+.
T Consensus 1 GLVnaH~Hl~~~~~rg~~~~~~l~~wl~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~-~~~~~~~~a~~~~ 79 (281)
T d1p1ma2 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMY-FHEEWIAKAVRDF 79 (281)
T ss_dssp CEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEE-SSHHHHHHHHHHH
T ss_pred CcEehhhCHhHHHHHhccCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhCCeEEEeeec-cCcHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999975 4567788899999
Q ss_pred CCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccc
Q 012333 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 240 (466)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 240 (466)
|++........+.... ....+++..+.++++... ...+...+.++..+.++++.+.++.++|++++++++
T Consensus 80 g~r~~~~~~~~~~~~~---------~~~~~~e~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~ 149 (281)
T d1p1ma2 80 GMRALLTRGLVDSNGD---------DGGRLEENLKLYNEWNGF-EGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVT 149 (281)
T ss_dssp CCEEEEEEEECCBTTB---------CTTHHHHHHHHHHHHTTG-GGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEeeeeeecCcc---------ccccHHHHHHHHHHhcCc-cCceEEEEecccchhhhhhhhHHHHHHHhccCcccc
Confidence 9999887776653211 112344555566666442 357888899999999999999999999999999999
Q ss_pred eeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCCccHHHH
Q 012333 241 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEM 319 (466)
Q Consensus 241 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~~~~~~~ 319 (466)
+|+.+...+. .....+...++++++.++.|+.++++++++++++.|+.+++||.++++. .+.+|+.++
T Consensus 150 iH~~e~~~e~-----------~~~~~l~~~g~l~~~~~~~H~~~~~~~di~~la~~~~~vv~cP~sn~~lg~~~~~~~~~ 218 (281)
T d1p1ma2 150 IHLYETSKEE-----------YDLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRM 218 (281)
T ss_dssp EEESCSTTCC-----------CCTHHHHTTTTTTSCEEEEECTTCCGGGTTTTTTSSEEEEECHHHHHHTTCCCCCHHHH
T ss_pred ccccCCcccc-----------hhHHHHHHcCCCCccccccceeeecHHHHHHHHhcCCccccccchhhhhcccchhHHHH
Confidence 9998865432 2455677888899999999999999999999999999999999999887 678999999
Q ss_pred HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 320 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 320 ~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
+++|+++++|||+.+.+...+++.+|+.+..+.+.+ .+..++++++++++|.++|++|||+
T Consensus 219 ~~~Gv~v~LGTD~~~s~~~~d~~~em~~a~~~~~~~--------~~~~~~~~~~l~~aT~~gA~aLGl~ 279 (281)
T d1p1ma2 219 IEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRNLDVNTCLKMVTYDGAQAMGFK 279 (281)
T ss_dssp HHTTCEEEECCCCTTTTSCCCHHHHHHHHHHHHHTT--------CTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred HhCCCeEEEECCCCCCCCCcCHHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 999999999999987777889999999998877642 3345999999999999999999994
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.96 E-value=3.1e-28 Score=228.10 Aligned_cols=311 Identities=27% Similarity=0.376 Sum_probs=209.1
Q ss_pred ecccccccCCccccccccc--CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCcc--------C
Q 012333 80 PGFVNTHVHTSQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------H 149 (466)
Q Consensus 80 PG~ID~H~H~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~--------~ 149 (466)
|||||+|+|+.++.+++.. .+.++.+|+....++.+..+++++.+......+.+++++||||++|.+.. .
T Consensus 1 PGlInaH~Hl~~s~~rg~~~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~ 80 (336)
T d2paja2 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDS 80 (336)
T ss_dssp ECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCH
T ss_pred CCCEehhhChhhhccccccccCCCCHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEecccccccccchhH
Confidence 9999999999999888754 46778999999999999999998888888889999999999999997532 1
Q ss_pred HHHHHHHHHHhCCeEEeecccccCCCCCCc----ccccCChHHHHHHHHHHHHHhccCCCCC--eEEEEeecccccCCHH
Q 012333 150 VSEMAKAVELLGLRACLVQSTMDCGEGLPA----SWAVRTTDDCIQSQKELYAKHHHAADGR--IRIWFGIRQIMNATDR 223 (466)
Q Consensus 150 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~ 223 (466)
.....+.....|++................ .+.......................... .............+++
T Consensus 81 ~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (336)
T d2paja2 81 SAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPR 160 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHH
T ss_pred HHHHHHHHHHhCceeEeecceeccCcccccccchhhhhhhHHHHHHHHHHHHHHhhhhcccccceeeecccccCcccCHH
Confidence 345577888999998776655543322111 1222233333344444444443332222 3333334445567899
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEEC
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~ 303 (466)
.+....+.+++.+.++++|+.+............ +..........+.+.......|+.+.++++++.+++.++.+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~l~~~~~~~~~~ 238 (336)
T d2paja2 161 EMRETAAVARRLGLRMHSHLSETVGYQDSAYSMY--GKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHC 238 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEECC---------------CCCHHHHHHHTTCCSTTEEEESCCSCCHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHhhhhccCCceeeeccccchhhHHHHHhc--CCccccccccccccccccccccceecchHHHHHHhhccccceec
Confidence 9999999999999999999988766555444333 33477788888888999999999999999999999999999999
Q ss_pred ccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhccccccc--------CCCCCCCCCCHHHHH
Q 012333 304 PASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFA--------NGTTDPAALPAETVL 374 (466)
Q Consensus 304 p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ls~~~al 374 (466)
|..+.+. .+.++++.+++.|+++++|||+.++++..+++.+|+.+....+...... .......++|++|+|
T Consensus 239 p~~~~~~~~~~~~~~~l~~~Gv~valGTD~~~s~~~~d~~~emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal 318 (336)
T d2paja2 239 PQSNGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVI 318 (336)
T ss_dssp HHHHHCC-----CCTTHHHHTCCEEECCCHHHHCSCCSHHHHHHHHHHHHHHTC-------------------CCHHHHH
T ss_pred cchhhccCccccchhhHHhcCCeEEEEcCCCCCCCcccHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHH
Confidence 9999887 6778999999999999999998766667899999999988776432111 111234679999999
Q ss_pred HHHhHHHHHHcCCCCcccc
Q 012333 375 RMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 375 ~~~T~~~A~~lgl~~~~G~ 393 (466)
+++|.|+|++||++ ++|+
T Consensus 319 ~~aT~~gA~aLgld-~iGk 336 (336)
T d2paja2 319 HWGTAGGARVMGLD-EVGK 336 (336)
T ss_dssp HHHTHHHHHHHTCT-TSSC
T ss_pred HHHHHHHHHHhCcc-ccCC
Confidence 99999999999995 5553
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.94 E-value=1.1e-25 Score=207.88 Aligned_cols=281 Identities=20% Similarity=0.229 Sum_probs=217.4
Q ss_pred ecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHHHHHHHHH
Q 012333 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL 159 (466)
Q Consensus 80 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~ 159 (466)
|||||+|+|+.++.+++.. .++.+|+....+.... . +.+........+++++|+||+.|+.. ....+..+...
T Consensus 1 PGlIdaH~Hl~~s~~~~~~--~~~~~~l~~~~~~~~~-~---~~~~~a~~~~~~~l~~G~Ttv~d~~~-~~~~~~~~~~~ 73 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQA--LPYFQWIPEVVIRGRH-L---RGVAAAQAGADTLTRLGAGGVGDIVW-APEVMDALLAR 73 (308)
T ss_dssp SCCCEEEEESSCCHHHHHH--CHHHHTSHHHHHHHTT-C---CHHHHHHHHHHHHHHTTCCCEEEEEC-SHHHHHHHHTC
T ss_pred CCccchhhChhhhCccccC--CCHHHHHHHHHhcccc-c---cHHHHHHHHHHHHHHcCCeEEEehhc-CHHHHHHHHHH
Confidence 9999999999888777643 3567787655444322 1 23445556678899999999999864 44555666777
Q ss_pred hCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCcc
Q 012333 160 LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239 (466)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 239 (466)
.+++........... ....+.......+.++.++......+...+..+..+.++.+.+.+....++..+.++
T Consensus 74 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (308)
T d2imra2 74 EDLSGTLYFEVLNPF--------PDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPL 145 (308)
T ss_dssp TTCCEEEEEEECBCC--------GGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCB
T ss_pred hCcCeEEEeeecCCC--------CCCHHHHHHHHHHHHHHHhccCCCceEEeeecccccccchHHHHHHhhhccccCccc
Confidence 788776654443211 112345556667777777777778888888889888999999999999999999999
Q ss_pred ceeccCCcchhHHHHhhcCC------------------------CCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHh
Q 012333 240 HMHVAEIPYENQVVMDTRKV------------------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 295 (466)
Q Consensus 240 ~~H~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 295 (466)
..|+.+.............. ...+.+.++..+.++.+..+.|+.++++++++++++
T Consensus 146 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~g~l~~~~~~~h~~~~~~~~~~~~~~ 225 (308)
T d2imra2 146 QIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVAR 225 (308)
T ss_dssp EEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHHHTCGGGCCEEEECCSCCHHHHHHHHH
T ss_pred eeeeecccchhhhhhhhccchhhhhhhhhhHHHhhhhhhcccccCCCHHHHHHHCCCCCCCeeeeecccchhhhhhhhhh
Confidence 99998876665554443321 223466788888888999999999999999999999
Q ss_pred cCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 296 AGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 296 ~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.|..+..||.++... .+..+++++.++|+++++|||+++.++..+++.+|+.+..+.+ ++++.|+|
T Consensus 226 ~g~~~~~~p~~~~~~~~~~~~~~~l~~aGv~valGTD~~~~~~~~~~~~e~~~a~~~~~-------------g~tp~e~l 292 (308)
T d2imra2 226 AGCAVVTCPRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQLYP-------------GLDPRVLV 292 (308)
T ss_dssp HTCCEEECHHHHHHTTCCCCCHHHHHHTTCCEEECCCCHHHHSCSCTHHHHHHHHHHCT-------------TSCHHHHH
T ss_pred cCCccccccccccccccccchHHHHHHCCCcEEEECCCCCCCCchhHHHHHHHHHHHcC-------------CCCHHHHH
Confidence 999999999999877 6788999999999999999998765566789999998876643 49999999
Q ss_pred HHHhHHHHHHcCCC
Q 012333 375 RMATINGAKSVLWD 388 (466)
Q Consensus 375 ~~~T~~~A~~lgl~ 388 (466)
+++|.|+|++||+.
T Consensus 293 ~~aT~~gA~~LGl~ 306 (308)
T d2imra2 293 RAAVKGGQRVVGGR 306 (308)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999984
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.91 E-value=4.7e-23 Score=191.10 Aligned_cols=307 Identities=20% Similarity=0.297 Sum_probs=220.5
Q ss_pred ecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHH-HHHHHHHHHHHhcCceeeeecCccCHHH---HHH
Q 012333 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSY-ISTLLCGIELIHSGVTCFAEAGGQHVSE---MAK 155 (466)
Q Consensus 80 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~GvTtv~~~~~~~~~~---~~~ 155 (466)
|||||+|+|+.++.+++.. +.++.+|+..+.|+.+..+.+++.. ......++.++.+|||++.++++..... ..+
T Consensus 1 PGlID~H~Hl~~~~~~g~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~~~~~~~~~~~~ 79 (325)
T d2ooda2 1 PGFIDGHIHLPQTRVLGAY-GEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFE 79 (325)
T ss_dssp ECEEEEEEEGGGTTCTTCC-SCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHH
T ss_pred CCCcchhhCccccccccCC-CCcHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEeeccccCchhhHHHHH
Confidence 9999999999988888755 4589999999888877766665543 3445577889999999999987655433 334
Q ss_pred HHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHH-H
Q 012333 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR-E 234 (466)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~-~ 234 (466)
+....+.+........... .+...............+........ ..+............+..........+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (325)
T d2ooda2 80 EASRRNMRVIAGLTGIDRN---APAEFIDTPENFYRDSKRLIAQYHDK--GRNLYAITPRFAFGASPELLKACQRLKHEH 154 (325)
T ss_dssp HHHHHTCCEEECCEECCSS---SCTTTCCCHHHHHHHHHHHHHHHTTB--TTEEEEEEECBGGGCCHHHHHHHHHHHHHC
T ss_pred HHHhhcccceeeeeccCCC---CCcccccCHHHHHHHHHHHHHhhccc--cceeeeeecccccccCHHHHHHHHhhHhhc
Confidence 5566677766555444321 11122233444444444444443332 4455556666666777776655555444 4
Q ss_pred cCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc-cCC
Q 012333 235 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 313 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-~~~ 313 (466)
.+..++.|+.+...+........+........+........+....|+.+++.+++..+...+..+..+|...... .+.
T Consensus 155 ~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (325)
T d2ooda2 155 PDCWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFLGSGL 234 (325)
T ss_dssp TTSEEEEECSCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCC
T ss_pred cCCceeeehhccHHHHHHHHHhcccCcchHHHHHhcCcccCceeeeeeeeechhhhhhhhccccccccccchhhcccccc
Confidence 5788999999988888777777776667788888888888899999999999999999999999999999988776 556
Q ss_pred ccHHHH--HHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCC----------CCCCCCCHHHHHHHHhHHH
Q 012333 314 APIKEM--LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT----------TDPAALPAETVLRMATING 381 (466)
Q Consensus 314 ~~~~~~--~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ls~~~al~~~T~~~ 381 (466)
.+...+ .+.|+.++++||..+. ...+++..++.+..+........... ....++|+.|+|+++|.||
T Consensus 235 ~~~~~~~~~~~gv~~~~gtD~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~eal~~AT~ng 313 (325)
T d2ooda2 235 FRLGRATDPEHRVKMSFGTDVGGG-NRFSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGG 313 (325)
T ss_dssp CCHHHHTCTTSCCEEEECCCBTTB-SCCCHHHHHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHH
T ss_pred CcHHHHHHhhcCCceEeecCcccC-CCccHHHHHHHHHHHHHhhcccccccccchhhhhhccccCCCCHHHHHHHHHHHH
Confidence 677665 4679999999998754 35689999988766543211111111 0124699999999999999
Q ss_pred HHHcCCCCcccc
Q 012333 382 AKSVLWDNDIGS 393 (466)
Q Consensus 382 A~~lgl~~~~G~ 393 (466)
|++||+++++||
T Consensus 314 A~aLG~~d~iGS 325 (325)
T d2ooda2 314 AEGLYIDDKLGN 325 (325)
T ss_dssp HHHTTCTTTSSS
T ss_pred HHHhCCCcccCc
Confidence 999999999997
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1e-21 Score=181.34 Aligned_cols=290 Identities=16% Similarity=0.160 Sum_probs=179.3
Q ss_pred cccccccCCccccccccc---CCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccC---HHHH-
Q 012333 81 GFVNTHVHTSQQLAKGIA---DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEM- 153 (466)
Q Consensus 81 G~ID~H~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~---~~~~- 153 (466)
.|||+|+|+..+...+.. ....+.+|+.. ++.....++.++.+......+..++++|||++.+++... ....
T Consensus 1 ~FID~H~Hl~~~~~~~~~~~~~~g~l~e~i~~-~~~~~~~~t~ed~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~ 79 (320)
T d1ra0a2 1 PFVEPHIHLDTTQTAGQPNWNQSGTLFEGIER-WAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALK 79 (320)
T ss_dssp CEEEEEECTTTTTCTTSSSCCSSCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHH
T ss_pred CCeecCcCcchhcccCCCCCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEEeccccccchHHHHH
Confidence 399999999776655432 34456778644 344566788888888888889999999999999865321 1111
Q ss_pred --HHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHH
Q 012333 154 --AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 231 (466)
Q Consensus 154 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 231 (466)
................... ..+.. ...... ...++....+...+............+.+.+..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (320)
T d1ra0a2 80 AMLEVKQEVAPWIDLQIVAFP-QEGIL------SYPNGE----ALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 148 (320)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC-TTCSS------SSTTHH----HHHHHHHHTTCSEECCCGGGSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccccc-ccccc------CcHHHH----HHHHHHHHhcccccccCCCCCCCccccHHHHHHHHHH
Confidence 1111222222211111111 00100 111111 2222222222222221111111222356778889999
Q ss_pred HHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEe-------ecCChhhHHHHHhcCCeEEECc
Q 012333 232 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT-------VWVNHTEIGLLSRAGVKVSHCP 304 (466)
Q Consensus 232 a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~-------~~~~~~~~~~~~~~g~~~~~~p 304 (466)
|++.++++.+|+.+........... ......... ...+..+.|+ ..+..+++..+.+.|+.++.+|
T Consensus 149 A~~~g~~~~~h~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 221 (320)
T d1ra0a2 149 AQKYDRLIDVHCDEIDDEQSRFVET------VAALAHHEG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANP 221 (320)
T ss_dssp HHHHTCEEEEEECCSSCTTCCHHHH------HHHHHHHHT-CGGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECH
T ss_pred HHHcCCCeeeeecccchhHHHhhhh------HHHHHHHhh-cccccccccceeccccchhhhHHHHHHhhhcCcEEEecc
Confidence 9999999999987665433221110 111111111 2223344444 3444677888999999999999
Q ss_pred cchhhc----------cCCccHHHHHHcCCcEEEccCCCCC----CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 305 ASAMRM----------LGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 305 ~~~~~~----------~~~~~~~~~~~~gi~~~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
.+++.. .+..+.+++.+.|+.++++||+... ....++++.++.+....+. ..++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~gtd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~s~ 291 (320)
T d1ra0a2 222 LVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQL----------MGYGQI 291 (320)
T ss_dssp HHHHHHTTTTCCSSCCCCCCCHHHHHHTTCCEEECCBCSSBTTBSCCCCCHHHHHHHHHHHTTC----------CSHHHH
T ss_pred chhhhhcccccccccccccCchhhHhhcCceEeecCCcCCCCCCCCCChhHHHHHHHHHHHhcc----------CCCCCH
Confidence 987654 3567999999999999999997642 2346889999887665321 224899
Q ss_pred HHHHHHHhHHHHHHcCCCCcccccccCCccC
Q 012333 371 ETVLRMATINGAKSVLWDNDIGSLEAGKKAD 401 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl~~~~G~i~~G~~AD 401 (466)
.++|+++|.|||++||+++ |+|+|||+||
T Consensus 292 ~eal~~aT~ngA~aLgl~~--Gsi~~Gk~AD 320 (320)
T d1ra0a2 292 NDGLNLITHHSARTLNLQD--YGIAAGNSAN 320 (320)
T ss_dssp HGGGGGGTHHHHHHTTCSS--CSSCTTSBCC
T ss_pred HHHHHHHHHHHHHHhCCCC--CccCCCCCcC
Confidence 9999999999999999975 9999999998
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=2.7e-19 Score=163.20 Aligned_cols=240 Identities=18% Similarity=0.140 Sum_probs=155.2
Q ss_pred CChhHHHHHHHHHHHHHHhcCceeeeecCccC--HHHHHH------HHH-HhCCeEEeecccccCCCCCCcccccCChHH
Q 012333 118 MTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--VSEMAK------AVE-LLGLRACLVQSTMDCGEGLPASWAVRTTDD 188 (466)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~--~~~~~~------~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
.++.+.+........+++..|+|++.+.+... ...... ... ........... .+ ...+.........
T Consensus 49 ~~~~~l~~~~~~~~~~~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 124 (300)
T d2bb0a2 49 ASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVDLVSTFM---GA-HAIPPEYQNDPDD 124 (300)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSHHHHHHHHHHHHHHHHHSSSEEEEEEE---EE-SSCCGGGTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCceeeecccccccchhHHHHHHHhhhhHHHhhccccccccc---cc-ccchhhhhhcHHH
Confidence 34555566666677889999999997754322 111111 111 11222111110 01 1112222223334
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHh
Q 012333 189 CIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLD 268 (466)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (466)
..+...+.+.......... ...........+.+.+.++.+.+++.+.++..|+......... ....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~------------~~~~ 190 (300)
T d2bb0a2 125 FLDQMLSLLPEIKEQELAS--FADIFTETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGA------------ELAG 190 (300)
T ss_dssp HHHHHHTTHHHHHHTTCCS--EEEEBBCTTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHH------------HHHH
T ss_pred HHHHHHHHHHHhhhccccc--ccccccccccCCHHHHHHHHHHHHhhhhcccccccchhhhHHH------------HHHH
Confidence 4444444443333322222 2233444556678888999999999999999998654332211 1111
Q ss_pred hhccCCCCeeEEEeecCChhhHHHHHhcCCeEEECccchhhc--cCCccHHHHHHcCCcEEEccCCCC-CCCCCCHHHHH
Q 012333 269 KIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEM 345 (466)
Q Consensus 269 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~--~~~~~~~~~~~~gi~~~~gsD~~~-~~~~~~~~~~~ 345 (466)
.. ....+.|+.++.++.++.+.+.+..+..||.++.++ ....+++.+++.|+++++|||+.+ ..+..+++.++
T Consensus 191 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~Gv~v~lgTD~~~~~~~~~~l~~~~ 266 (300)
T d2bb0a2 191 KL----KAVSADHLVGTSDEGIKKLAEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIM 266 (300)
T ss_dssp HT----TCSEEEECTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHH
T ss_pred Hh----CCceEEEeeeccHHHHHHHHhcCcceeecchhhhhhhccccccHHHHHHCCCEEEEEeCCCCCCCchhhHHHHH
Confidence 11 224688999999999999999999999999998766 445789999999999999999754 33456899998
Q ss_pred HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 346 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
+.+.... +||+.|+|+++|.|||++||+++++|+
T Consensus 267 ~~a~~~~--------------gl~~~eal~~aT~~~A~~lG~~~~~G~ 300 (300)
T d2bb0a2 267 SIAALHL--------------KMTAEEIWHAVTVNAAYAIGKGEEAGQ 300 (300)
T ss_dssp HHHHHHS--------------CCCHHHHHHHTTHHHHHHTTCTTTSSC
T ss_pred HHHHHHc--------------CCCHHHHHHHHHHHHHHHhCcchhhCc
Confidence 8764321 499999999999999999999999985
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.82 E-value=4.3e-19 Score=161.02 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=111.2
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCC
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~ 298 (466)
........+........+..+.+|+......... ...... ....+.|+.++++++++++++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 217 (301)
T d2q09a2 154 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLGGS------------TLAANF----GALSVDHLEYLDPEGIQALAHRGV 217 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCSHH------------HHHHHT----TCSEEEECTTCCHHHHHHHHHHTC
T ss_pred ccchhhHHHHHHHHHHhcccceecccccchhHHH------------HHHHhc----CCceEeeeecCcHHHHHHHHHcCC
Confidence 3455556667777888889998888654332211 111111 234688999999999999999999
Q ss_pred eEEECccchhhc--cCCccHHHHHHcCCcEEEccCCCCC-CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 012333 299 KVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375 (466)
Q Consensus 299 ~~~~~p~~~~~~--~~~~~~~~~~~~gi~~~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 375 (466)
.+..||.++..+ ...++++++.++|+++++|||+.+. ....+++.+++.+.... +||+.|+|+
T Consensus 218 ~~~~~~~s~~~l~~~~~~~~~~l~~aGv~v~lGTD~~~~~~~~~~l~~~~~~~~~~~--------------glt~~eal~ 283 (301)
T d2q09a2 218 VATLLPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLF--------------GLTPVEAMA 283 (301)
T ss_dssp EEEECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHHHHHHHHH--------------CCCHHHHHH
T ss_pred CcccCccHHhhhcccccCcHHHHHHCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHc--------------CCCHHHHHH
Confidence 999999998776 3467999999999999999997543 23457888888764322 499999999
Q ss_pred HHhHHHHHHcCCCCcccc
Q 012333 376 MATINGAKSVLWDNDIGS 393 (466)
Q Consensus 376 ~~T~~~A~~lgl~~~~G~ 393 (466)
++|.|||++||+++++|+
T Consensus 284 ~aT~~~A~~lG~~~~iG~ 301 (301)
T d2q09a2 284 GVTRHAARALGEQEQLGQ 301 (301)
T ss_dssp HTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHhCcccccCc
Confidence 999999999999998885
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.80 E-value=4.7e-18 Score=154.71 Aligned_cols=148 Identities=17% Similarity=0.225 Sum_probs=114.8
Q ss_pred ccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHh
Q 012333 216 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 295 (466)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 295 (466)
.......+.+..+++.+...+.++..|+.+....... ...... ....+.|+.+..++++..+.+
T Consensus 151 ~~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 214 (301)
T d2puza2 151 EGIAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGA------------ELAASY----NALSADHLEYLDETGAKALAK 214 (301)
T ss_dssp STTSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHH------------HHHHHT----TCSEEEECTTCCHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHCCCceeeecccccchhHH------------HHHhhh----ccceeeeeecchHHHHHHHHh
Confidence 3345677888899999999999999998765433221 111111 124577888899999999999
Q ss_pred cCCeEEECccchhhc--cCCccHHHHHHcCCcEEEccCCCCC-CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 012333 296 AGVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 372 (466)
Q Consensus 296 ~g~~~~~~p~~~~~~--~~~~~~~~~~~~gi~~~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 372 (466)
.+..+..+|..+.+. ...++++.++++|+++++|||+.+. .+..++..+++.+.... ++|+.|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~l~~~~~~~~~~~--------------gl~~~e 280 (301)
T d2puza2 215 AGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLF--------------RMTVEE 280 (301)
T ss_dssp HTCEEEECHHHHHHHTCCCCCCHHHHHHHTCCEEECCCCCSSSCCBCCHHHHHHHHHHHH--------------CCCHHH
T ss_pred cCCeeeeccchhhhhcccccchHHHHHHCCCeEEEEeCCCCCCCccchHHHHHHHHHHHc--------------CCCHHH
Confidence 999999999888655 4568999999999999999997543 33467888877654322 499999
Q ss_pred HHHHHhHHHHHHcCCCCcccc
Q 012333 373 VLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 373 al~~~T~~~A~~lgl~~~~G~ 393 (466)
||+++|.|||++||+++++||
T Consensus 281 al~~aT~~~A~~LGl~~~~GS 301 (301)
T d2puza2 281 CLTATTRNAAKALGLLAETGT 301 (301)
T ss_dssp HHHHTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHHHhCCCcCcCc
Confidence 999999999999999999996
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.69 E-value=9.6e-17 Score=146.27 Aligned_cols=295 Identities=15% Similarity=0.069 Sum_probs=129.1
Q ss_pred ecccccccCCcccccccccCCCCchHhhhhccccccCCCChhHHHHHHHHHHHHHHhcCceeeeecCccCHHH-HHHHHH
Q 012333 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSE-MAKAVE 158 (466)
Q Consensus 80 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~-~~~~~~ 158 (466)
|||||+|+|+++...+..........|. ..........+.++.+......+.+++++||||+++.++..... ......
T Consensus 1 PGlID~H~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~~~~~~~~~~ 79 (324)
T d2p9ba2 1 PGLINAHTHLFSQGKPLNPKLATPKGQR-MVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQI 79 (324)
T ss_dssp ECEEEEEECSCC------------------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSSHHHHHHHHH
T ss_pred CCeeccccCccccCccccchhcccccch-hhhhhhhccCCHHHHHHHHHHHHHHHHhCCceEEeccCCCcchhHHHHHHh
Confidence 9999999999766544432222222221 11122233455566677777788999999999999986543221 112222
Q ss_pred Hh----CCeEEeecccccCCCCC--CcccccC-ChHHHHHHHHHHHHHhccCCCCCeEEEE----------eecccccCC
Q 012333 159 LL----GLRACLVQSTMDCGEGL--PASWAVR-TTDDCIQSQKELYAKHHHAADGRIRIWF----------GIRQIMNAT 221 (466)
Q Consensus 159 ~~----g~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~~~ 221 (466)
.. +..............+. ....... ..........+.... +........ ........+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (324)
T d2p9ba2 80 DAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEARTAVAQNLKA----GVNAIKIAATGGVTDAQEIGEAGSPQMS 155 (324)
T ss_dssp HTTSSCCCEEECCCSCEECCCSSCCCCEECCSCCHHHHHHHHHHHHHT----TCSCEEEECSCCTTSCCCC------CCC
T ss_pred hhhhccccccccccccccCCcccccccccccchhHHHHHHHHHHHHhh----ccchhhhhcccccccccccccccchhcc
Confidence 21 12222211111111111 1111111 111222212222111 111111100 111112234
Q ss_pred HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcC-------CCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHH
Q 012333 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK-------VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS 294 (466)
Q Consensus 222 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 294 (466)
..............+.....|................ ........+...+.........|........+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (324)
T d2p9ba2 156 VEQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNALRGYSALIPTLSAGLPLTLLG 235 (324)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTCSEEEECCCCCHHHHHHHHCCTTSTTSCCEEECCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCccccccccchhhhHHHHhhhhhhhhhhhhhhhHHHHHHHcCccccccceeeecccccchHHHhh
Confidence 4555566666677777777776443222111111000 000011112222222222233333332222222221
Q ss_pred hc--CCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCC-CCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 295 RA--GVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 295 ~~--g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
.. +.....++...... ....+++.+.+.|+++++|||.+.. ...++++.+++..... . |+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~GtD~~~~~~~~~~l~~el~~~~~~--~------------Gls~ 301 (324)
T d2p9ba2 236 QDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVAY--A------------GFSP 301 (324)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTSCTTCHHHHHHHHHHH--H------------CCCH
T ss_pred hcccCcccccchhhhhchhhhHHHHHHHHHcCCeEEEEeCCCCCcChhhHHHHHHHHHHHh--c------------CCCH
Confidence 11 11111111111111 3345788999999999999997643 3345777877654321 1 4999
Q ss_pred HHHHHHHhHHHHHHcCCCCcccc
Q 012333 371 ETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
.|+|+++|.|||++||+++++||
T Consensus 302 ~eaL~~aT~n~A~~lgl~d~~GS 324 (324)
T d2p9ba2 302 AEALHAATAVNASILGVDAETGS 324 (324)
T ss_dssp HHHHHHHTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHHHHHhCCCcCcCc
Confidence 99999999999999999999996
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.67 E-value=1.7e-16 Score=146.30 Aligned_cols=182 Identities=12% Similarity=0.137 Sum_probs=109.7
Q ss_pred CCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhh--cC--------CCCchH-------H
Q 012333 203 AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT--RK--------VDHGTV-------T 265 (466)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~--~~--------~~~~~~-------~ 265 (466)
.+-..++++......+..++..+.+.++.++..+..+.+|+.+........... .+ ...... .
T Consensus 90 ~G~~~~k~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~av~r 169 (335)
T d1gkpa2 90 DGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTAR 169 (335)
T ss_dssp TTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHH
T ss_pred hhccccccccccCCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchhhhhHHHHHHH
Confidence 344556676776666778899999999999999999999996543221111110 00 011111 1
Q ss_pred HHhhhccCCCCeeEEEeecCCh----hhHHHHHhcCCeEE--ECccchhh--------------ccCCc---------cH
Q 012333 266 FLDKIEFLQNNLLSAHTVWVNH----TEIGLLSRAGVKVS--HCPASAMR--------------MLGFA---------PI 316 (466)
Q Consensus 266 ~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~g~~~~--~~p~~~~~--------------~~~~~---------~~ 316 (466)
.+......+.+ .|-.+++. +.++.+++.|..+. +||+.... ..-.+ .+
T Consensus 170 ~~~la~~~~~~---~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~~~~~k~~PPlRs~~d~~~L 246 (335)
T d1gkpa2 170 FATFLETTGAT---GYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVL 246 (335)
T ss_dssp HHHHHHHHTCE---EEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHH
T ss_pred HHHHHHHhCcc---cchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCchhcceecccCCCCHHHHHHH
Confidence 11122222333 34444443 44566677776654 55553320 01123 34
Q ss_pred HHHHHcCCcEEEccCCCCCCCC---------------C---CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 012333 317 KEMLHADICVSLGTDGAPSNNR---------------M---SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 378 (466)
Q Consensus 317 ~~~~~~gi~~~~gsD~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 378 (466)
++.+..|...+++|||.|+... + ...-++.+...+.+ ..+|++++++++|
T Consensus 247 ~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~------------g~lsl~~~v~~~S 314 (335)
T d1gkpa2 247 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSR------------GRLDIHRFVDAAS 314 (335)
T ss_dssp HHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTS------------SSCCHHHHHHHHT
T ss_pred HHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHc------------CCCCHHHHHHHHH
Confidence 5678899999999999886410 0 01111111111222 2499999999999
Q ss_pred HHHHHHcCCCCcccccccCCc
Q 012333 379 INGAKSVLWDNDIGSLEAGKK 399 (466)
Q Consensus 379 ~~~A~~lgl~~~~G~i~~G~~ 399 (466)
.|||+++||.+++|+|++|++
T Consensus 315 ~nPAri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 315 TKAAKLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHHHHHTTCTTTSSSCCTTSB
T ss_pred HHHHHHhCCCCCCCeecCCCC
Confidence 999999999989999999986
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=3.2e-16 Score=144.03 Aligned_cols=178 Identities=11% Similarity=0.085 Sum_probs=104.4
Q ss_pred CCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhh--cCCCC--------c-------hHHH
Q 012333 204 ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT--RKVDH--------G-------TVTF 266 (466)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~--~~~~~--------~-------~~~~ 266 (466)
+...+++++.....+..+++.+.++++.++..+..+.+|+.+........... .+... . ....
T Consensus 94 g~~~~ki~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~ai~r~ 173 (334)
T d1kcxa2 94 GVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRA 173 (334)
T ss_dssp CCCEEEEESCSTTTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHH
T ss_pred cCceeeeeeccCCCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCCCCHHHHHHHHHHH
Confidence 33456666665555667888899999999999999999997643322111100 11110 0 0112
Q ss_pred HhhhccCCCCeeEEEeecCC-hhhHHHHHhcCCeEE--ECccchh---------------hc------c----CCccHHH
Q 012333 267 LDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVKVS--HCPASAM---------------RM------L----GFAPIKE 318 (466)
Q Consensus 267 ~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~g~~~~--~~p~~~~---------------~~------~----~~~~~~~ 318 (466)
+...+..+.+..+.|...-. -+.++.+++.|..+. .||.... .. + ....+++
T Consensus 174 ~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~~~~~~~pPlr~~~~d~eaL~~ 253 (334)
T d1kcxa2 174 IAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTS 253 (334)
T ss_dssp HHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHH
T ss_pred HHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHhcceEeeeccCchhhhHHHHHH
Confidence 22223345566666654321 244566677777655 4543220 00 0 1124556
Q ss_pred HHHcCCcEEEccCCCCCCC---------------CCCHHHHH---HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHH
Q 012333 319 MLHADICVSLGTDGAPSNN---------------RMSIVDEM---YLASLINKGREVFANGTTDPAALPAETVLRMATIN 380 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~---------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~ 380 (466)
.+..|...+++|||.|+.. ++..++.+ .+...+. ...+|++++++++|.|
T Consensus 254 ~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~------------~g~isl~~~v~~~s~n 321 (334)
T d1kcxa2 254 LLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVA------------TGKMDENQFVAVTSTN 321 (334)
T ss_dssp HHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTT------------TTSSCHHHHHHHHTHH
T ss_pred HhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHH------------cCCCCHHHHHHHHHHH
Confidence 6788999999999988641 11111111 1111122 2249999999999999
Q ss_pred HHHHcCCCCcccc
Q 012333 381 GAKSVLWDNDIGS 393 (466)
Q Consensus 381 ~A~~lgl~~~~G~ 393 (466)
||++|||++++|+
T Consensus 322 PA~i~gL~p~KGr 334 (334)
T d1kcxa2 322 AAKIFNLYPRKGR 334 (334)
T ss_dssp HHHHHTCTTTSSC
T ss_pred HHHHhCCCCCCCC
Confidence 9999999988885
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.65 E-value=5.4e-17 Score=122.25 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=60.7
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEE-CCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~-~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~ 91 (466)
+.+++|+|++|+|+|+..+++.+++|+|+ ||||.+|++..+.. .+ .+.++||++|++|+|||||+|+|+..
T Consensus 3 ~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~--~~-~~~~viD~~Gk~v~PGlid~H~Hl~~ 74 (118)
T d2p9ba1 3 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETS--IP-AEYHYLDGTGKIVMLEVGKSADLLVL 74 (118)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCC--CC-TTCEEEECTTCEEECCTTSBCCEEEE
T ss_pred CccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEccccccc--cc-ceeEEEeccCcEEEeeecceeEEEEe
Confidence 45789999999999988889999999995 79999999865432 12 36789999999999999999999864
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.62 E-value=2e-15 Score=138.62 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=99.2
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh--hcCCCCc---------h------HHHHh
Q 012333 206 GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDHG---------T------VTFLD 268 (466)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~~---------~------~~~~~ 268 (466)
..++.+.........+++.+.++++.++..+..+.+|+.+.......... ..+.... . ...+.
T Consensus 96 ~~~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~r~~~ 175 (334)
T d2ftwa2 96 NSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIV 175 (334)
T ss_dssp CEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHH
T ss_pred cccceeeccccccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCcccccccCcHHHHHHHHHHHHH
Confidence 34555554444445677889999999999999999999764332221111 1111100 0 11122
Q ss_pred hhccCCCCeeEEEeecC-ChhhHHHHHhcCCeEE--ECccchh-----------h----c------c----CCccHHHHH
Q 012333 269 KIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKVS--HCPASAM-----------R----M------L----GFAPIKEML 320 (466)
Q Consensus 269 ~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~~--~~p~~~~-----------~----~------~----~~~~~~~~~ 320 (466)
.....+.+..+.|...- +-+.++.+++.|..+. +||..-. + . + ....++..+
T Consensus 176 la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~~~~~~~PPlR~~~~d~~~L~~~l 255 (334)
T d2ftwa2 176 IADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYL 255 (334)
T ss_dssp HHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHH
T ss_pred HHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhccceEeeccccccHhhhhhHHHHh
Confidence 22223444545554321 1134566677777765 4444221 0 0 0 012345567
Q ss_pred HcCCcEEEccCCCCCCCC---------------CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 321 HADICVSLGTDGAPSNNR---------------MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 321 ~~gi~~~~gsD~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
..|...+++|||.|+... +..++.+.... ... ......+|++++++++|.|||++|
T Consensus 256 ~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll-~~~--------~v~~g~lsl~~~v~~~s~nPAki~ 326 (334)
T d2ftwa2 256 ARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIV-WEN--------GVNTGKLTWCQFVRATSSERARIF 326 (334)
T ss_dssp HHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHH-HHH--------HTTTTSSCHHHHHHHHTHHHHHHT
T ss_pred hCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHH-HHH--------HHHcCCCCHHHHHHHHhHHHHHHh
Confidence 889999999999886410 11111111111 110 012224999999999999999999
Q ss_pred CCCCcccc
Q 012333 386 LWDNDIGS 393 (466)
Q Consensus 386 gl~~~~G~ 393 (466)
||.+++|+
T Consensus 327 gL~p~KGr 334 (334)
T d2ftwa2 327 NIYPRKGR 334 (334)
T ss_dssp TCTTTSSC
T ss_pred CCCCCCCC
Confidence 99888885
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.60 E-value=7.4e-16 Score=139.36 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=94.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCC-CC-chHHHHhhhccCCCCeeEEEeecCChhhHHHHHh
Q 012333 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV-DH-GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 295 (466)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 295 (466)
..............++..+.....|................. .. ...................|.....+.......+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (303)
T d3be7a2 143 KQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAK 222 (303)
T ss_dssp BCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSEEEECTTCCHHHHHHHHHTTCEEECCCSTHHHHHTTTTT
T ss_pred cchhhHHHHHHHHHHHHhCcchhhhhhhhhhHHHHHHHhhhhhhhhccchhhhhhhcccceeEEEecccchhhhhhhhhh
Confidence 344566777778888888888877765543322221110000 00 0000000000111223455666655555555555
Q ss_pred cCCeEEECccchhhc-cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 296 AGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 296 ~g~~~~~~p~~~~~~-~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.+.....++..+... ....+++.+.++|+++++|||++.. +..++..+++... . .|+|+.|||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGv~v~lGTD~~~~-~~~~~~~el~~~~--~-------------~Gls~~eaL 286 (303)
T d3be7a2 223 AGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIF-DHGDNAKQFAYMV--E-------------WGMTPLEAI 286 (303)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTB-CTTCGGGHHHHHH--H-------------TTCCHHHHH
T ss_pred ccCcHHHHhHHHHHhhhhHHHHHHHHHCCCeEEEEeCCCCc-ccHHHHHHHHHHH--H-------------cCCCHHHHH
Confidence 565555566555433 4567889999999999999998644 3345556665432 1 159999999
Q ss_pred HHHhHHHHHHcCCCCccc
Q 012333 375 RMATINGAKSVLWDNDIG 392 (466)
Q Consensus 375 ~~~T~~~A~~lgl~~~~G 392 (466)
+++|.|||++||++ ++|
T Consensus 287 ~~aT~n~A~~lGl~-D~G 303 (303)
T d3be7a2 287 QASTIKTATLFGIE-NIG 303 (303)
T ss_dssp HTTTHHHHHHHTCS-SCS
T ss_pred HHHHHHHHHHhCCc-ccC
Confidence 99999999999996 456
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.59 E-value=1.2e-16 Score=124.67 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=102.0
Q ss_pred HHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCC
Q 012333 319 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 398 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~ 398 (466)
+++++..+++|+|...+++.- ..+.... ....+.++...++|.++|+.+++.+..|+|++||
T Consensus 4 li~n~~av~~g~~G~a~~~~r------------v~a~d~r------~~~~~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~ 65 (139)
T d2paja1 4 LIRNAAAIMTGGRGTADDPSR------------VPGPDIR------IVGDTIDAIGALAPRPGETIVDATDCVIYVAVGY 65 (139)
T ss_dssp EEECBSEEBCCCCSSSSSCSB------------CCCCCEE------EETTEEEEESSCCCCTTCEEEECBTCEEECSTTS
T ss_pred HHhchhhhhhCCCCCCCCccc------------ccchhhH------hhcccHHHHHhhhhhccchhcCCCCccceeccCC
Confidence 457788888888876543110 0000000 0112344555688999999999998899999999
Q ss_pred ccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHHHHHHHhh
Q 012333 399 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 399 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~~ 464 (466)
.|||+++|.+...+.|.+||+..++|......|+.||++|+++++||+++++|++++.++..+..-
T Consensus 66 ~ADli~~d~~~p~~~p~~dp~~~lV~~~~~~~V~~v~V~G~~vv~dg~l~~iD~~~i~~~a~~~~~ 131 (139)
T d2paja1 66 AADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKELGGEARRVVR 131 (139)
T ss_dssp BCCEEEEECCSGGGTTCSSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCCHHHHHHHHHHHHH
T ss_pred cccEEEEcCCCcccCCCCCHHHHHHHhhCcCcceeEEEcCEEEEECCEeccCCHHHHHHHHHHHHH
Confidence 999999999988888999999999999999999999999999999999999999999988876543
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.2e-15 Score=108.38 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcccc
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~~~ 93 (466)
..|+|++||++ ...+.+++|+|++|+|.+|++..+. | ++.++||++|++|+|||||.|+|.....
T Consensus 2 ~al~n~rI~dg---~~~~~~~~i~i~~g~I~~Ig~~~~~----p-~~~~viDl~G~~l~PGlid~hvH~~~~~ 66 (85)
T d1yrra1 2 YALTQGRIFTG---HEFLDDHAVVIADGLIKSVCPVAEL----P-PEIEQRSLNGAILSPTLAAGKVANLTAF 66 (85)
T ss_dssp EEEESSEEECS---SCEESSEEEEEETTEEEEEEEGGGS----C-TTCCEEECTTCEEEESCCTTSBCCEEEE
T ss_pred eEEEeeEEECC---CCcEeccEEEEeccEEEEEcccccc----c-ceeEEEecCCcEEEcccEecceeecccc
Confidence 46899999964 3466788999999999999986653 3 3778999999999999999999986543
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.59 E-value=2.8e-14 Score=129.14 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 312 GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 312 ~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
...+++.+.++|+++++|||++.. +..+++.+++... . .|||+.|+|+++|.|||++||+++++
T Consensus 246 ~~~~~~~l~~~Gv~v~lGTD~~~~-~~~~~~~el~~~~--~-------------~Gls~~eaL~~aT~~~A~~LGl~d~i 309 (310)
T d2qs8a2 246 ISDTFRKAYEKGVKIAFGTDAGVQ-KHGTNWKEFVYMV--E-------------NGMPAMKAIQSATMETAKLLRIEDKL 309 (310)
T ss_dssp HHHHHHHHHHHTCCBCCCCCBTTB-CTTCTTHHHHHHH--H-------------TTCCHHHHHHHTTHHHHHHTTCTTTS
T ss_pred hhHHHHHHHHCCCeEEEecCCCCC-CccHHHHHHHHHH--H-------------cCCCHHHHHHHHHHHHHHHhCcCCCc
Confidence 346789999999999999998654 3346667766542 1 15999999999999999999999887
Q ss_pred c
Q 012333 392 G 392 (466)
Q Consensus 392 G 392 (466)
|
T Consensus 310 G 310 (310)
T d2qs8a2 310 G 310 (310)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=2.5e-17 Score=124.48 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=85.9
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECCee
Q 012333 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 447 (466)
Q Consensus 368 ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 447 (466)
.+.++++.++|..+|..+|. ..+|+|++|+.|||+++|.+...+.|.+||++.+++.. +.+|..|||+|++|+++|++
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~-~~~GrIe~G~~ADivviDl~~p~~~p~~dp~~~lV~~~-~~~V~~V~V~Gk~Vv~dG~~ 103 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGK-LVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAF-SGEVFATMVAGKWIYFDGEY 103 (123)
T ss_dssp TEEEEEEESSCCCSEECTTE-EEEESCCTTSBCCEEEEECCSGGGCSGGGHHHHHHHTC-CSCCSEEEETTEEEEETTBC
T ss_pred ccHHHHHhhhhccChhhcCC-ccccccCCCCCcCEEEEeCCCCcccchhhhHHHHHhcc-CCCccEEEECCEEEEECCeE
Confidence 57888999999999999998 46899999999999999999888889999999998865 46899999999999999999
Q ss_pred eeccHHHHHHHHHHHhh
Q 012333 448 LLLMRGRLFQLQDKLLM 464 (466)
Q Consensus 448 ~~~~~~~~~~~~~~~~~ 464 (466)
+++++++++++..+..-
T Consensus 104 ~~iD~~ei~~~~~~~a~ 120 (123)
T d1p1ma1 104 PTIDSEEVKRELARIEK 120 (123)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999887653
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.57 E-value=1.1e-14 Score=133.72 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=104.6
Q ss_pred cCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh--hcCCCC--------ch-------H
Q 012333 202 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDH--------GT-------V 264 (466)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~--------~~-------~ 264 (466)
..+-..++++.........+.+.+.++++.++..+..+.+|+.+.......... ..+... .. .
T Consensus 91 ~~g~~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~ 170 (332)
T d1ynya2 91 SEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATG 170 (332)
T ss_dssp TSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHH
T ss_pred hhcccceeeeeccccccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccchhhHHHHHHH
Confidence 334455666555555556678889999999999999999999764321111111 111000 00 1
Q ss_pred HHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECccchhh--------------ccCCc---------cHHH
Q 012333 265 TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCPASAMR--------------MLGFA---------PIKE 318 (466)
Q Consensus 265 ~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p~~~~~--------------~~~~~---------~~~~ 318 (466)
..+......+.+..+.|...- +-+.++.+++.|.. ..+||..-.. ....+ .+++
T Consensus 171 r~~~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~PPLRs~~dr~aL~~ 250 (332)
T d1ynya2 171 RAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWS 250 (332)
T ss_dssp HHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSSGGGGGCCSSCCCCTTHHHHHHH
T ss_pred HHHHhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhccCceeEecCccccHHHHHHHHH
Confidence 112222223344444443321 12445666677654 5678774321 01122 3566
Q ss_pred HHHcCCcEEEccCCCCCCCCC-------CHH---------HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHH
Q 012333 319 MLHADICVSLGTDGAPSNNRM-------SIV---------DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGA 382 (466)
Q Consensus 319 ~~~~gi~~~~gsD~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A 382 (466)
.+..|...+++|||.|+.... +++ +.+ ...+... ......+|++++++++|.|||
T Consensus 251 al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~-l~~~~~~--------~v~~g~lsl~~~v~~~s~nPA 321 (332)
T d1ynya2 251 ALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDR-LTILYSE--------GVRQGRISLNQFVDISSTKAA 321 (332)
T ss_dssp HHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTH-HHHHHHH--------TTTTTSSCHHHHHHHHTHHHH
T ss_pred HHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHH-HHHHHHH--------HHHcCCCCHHHHHHHHhHHHH
Confidence 788899999999999864210 111 111 1111111 112335999999999999999
Q ss_pred HHcCCCCcccc
Q 012333 383 KSVLWDNDIGS 393 (466)
Q Consensus 383 ~~lgl~~~~G~ 393 (466)
++|||.+++|+
T Consensus 322 ki~GL~p~KGt 332 (332)
T d1ynya2 322 KLFGMFPRKGT 332 (332)
T ss_dssp HHTTCTTTSSS
T ss_pred HHhCCCCCCCC
Confidence 99999999996
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.54 E-value=1.3e-14 Score=132.96 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=104.3
Q ss_pred HhccCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh--hcCC--------CCch-----
Q 012333 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKV--------DHGT----- 263 (466)
Q Consensus 199 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~--------~~~~----- 263 (466)
.+.+.+-..+++++........+...+.++++.+.+.+..+.+|+.+.......... ..+. ....
T Consensus 87 ~~~~~Gv~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~ 166 (330)
T d1nfga2 87 VLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAE 166 (330)
T ss_dssp TGGGGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHH
T ss_pred hhhhhcccceeeeccccccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhcccccChHHHHH
Confidence 344444455666665555555678889999999999999999999763322111010 0010 0001
Q ss_pred --HHHHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCeE--EECccchhh--------------ccCCc---------c
Q 012333 264 --VTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKV--SHCPASAMR--------------MLGFA---------P 315 (466)
Q Consensus 264 --~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~~--~~~p~~~~~--------------~~~~~---------~ 315 (466)
...+...+..+.+..+.|...- +-+.++++++.|..+ .+||+.-.. ..-.+ .
T Consensus 167 av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~~~~~~k~~PPLR~~~d~~a 246 (330)
T d1nfga2 167 ATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDV 246 (330)
T ss_dssp HHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccccCceeeecCcCCcHHHHHH
Confidence 1112222233444444443321 113455566677654 466664321 01123 4
Q ss_pred HHHHHHcCCcEEEccCCCCCCC-------------------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 316 IKEMLHADICVSLGTDGAPSNN-------------------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 316 ~~~~~~~gi~~~~gsD~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
+++.+..|...+++|||.|+.. ++...-.+.+ ..+.++ ++|+++++++
T Consensus 247 L~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~-~~v~~~------------~l~l~~~v~~ 313 (330)
T d1nfga2 247 LWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEG------------RISLTQFVEL 313 (330)
T ss_dssp HHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTT------------SSCHHHHHHH
T ss_pred HhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHH-HHHHcC------------CCCHHHHHHH
Confidence 5567889999999999988531 1111111111 123322 4999999999
Q ss_pred HhHHHHHHcCCCCcccc
Q 012333 377 ATINGAKSVLWDNDIGS 393 (466)
Q Consensus 377 ~T~~~A~~lgl~~~~G~ 393 (466)
+|.|||++|||.+++|+
T Consensus 314 ~S~nPAki~gL~p~KGt 330 (330)
T d1nfga2 314 VATRPAKVFGMFPQKGT 330 (330)
T ss_dssp HTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHhCCCCCCCC
Confidence 99999999999999996
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=6.1e-15 Score=109.34 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=53.5
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~ 91 (466)
+..+||+|++|++++ .....+|+|++|||++|++..+.. ..++.++||++|++|+|||||+|.|...
T Consensus 7 ~~~llikna~i~~~~----~~~~~dI~I~~g~I~~I~~~~~~~---~~~~~~vID~~G~~v~PG~ID~H~h~~~ 73 (105)
T d1onwa1 7 AGFTLLQGAHLYAPE----DRGICDVLVANGKIIAVASNIPSD---IVPNCTVVDLSGQILCPEILPGNDADLL 73 (105)
T ss_dssp GCCEEEESCEEESSS----EEEECEEEEETTEEEEEETTCCTT---SSSSCEEEECTTCEEEESCCTTSBCCEE
T ss_pred CCCEEEECcEEEcCC----CCeeeeEEEECCEEEEeccCcccc---cCCCCeEEcCCCCEEeCCEeecccCcce
Confidence 456899999999753 235679999999999999865432 1136789999999999999999998643
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.53 E-value=3.1e-15 Score=135.87 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=49.9
Q ss_pred CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 312 GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 312 ~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
...+++.+.++|+++++|||++... ....+.+++.. . .++|+.|+|+++|.|||++||+++++
T Consensus 248 ~~~~~~~l~~aGv~v~~GTD~~~~~-~~~~~~el~~~---~-------------~gls~~eaL~~ATi~~A~aLg~~d~i 310 (311)
T d2r8ca2 248 GLHSIEIMKRAGVKMGFGTDLLGEA-QRLQSDEFRIL---A-------------EVLSPAEVIASATIVSAEVLGMQDKL 310 (311)
T ss_dssp HHHHHHHHHHTTCEECCCCCCCGGG-GGGTTHHHHHH---T-------------TTSCHHHHHHHTTHHHHHHTTCTTTS
T ss_pred hhHHHHHHHHCCCeEEEEeCCCCCc-hHHHHHHHHHH---H-------------cCCCHHHHHHHHHHHHHHHHCCCcCC
Confidence 3467899999999999999986432 23344555432 1 15999999999999999999999887
Q ss_pred c
Q 012333 392 G 392 (466)
Q Consensus 392 G 392 (466)
|
T Consensus 311 G 311 (311)
T d2r8ca2 311 G 311 (311)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.53 E-value=1.5e-14 Score=134.66 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=100.6
Q ss_pred CCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHh--hcCCCC--------c-------hHH
Q 012333 203 AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDH--------G-------TVT 265 (466)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~--------~-------~~~ 265 (466)
.+-..+++++.... ...+.+.+.++++.++..|..+.+|+.+.......... ..+... . ...
T Consensus 105 ~Gv~~~k~f~~~~~-~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~g~~~~~~~~~~rP~~aE~~av~r 183 (384)
T d2fvka2 105 YGVSSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNR 183 (384)
T ss_dssp HCCCEEEEESSSTT-TBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHH
T ss_pred Ccccccceeccccc-cccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhhcCCCChhhcccccccchhhHHHHH
Confidence 33445555444333 34677788899999999999999999653322211111 111110 0 111
Q ss_pred HHhhhccCCCCeeEEEeecC-ChhhHHHHHhcCCe--EEECccchhh---------------------------------
Q 012333 266 FLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--VSHCPASAMR--------------------------------- 309 (466)
Q Consensus 266 ~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~g~~--~~~~p~~~~~--------------------------------- 309 (466)
.+...+..+.+..+.|...- +-+.++.+++.|.. ..+||+....
T Consensus 184 ~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (384)
T d2fvka2 184 AITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNP 263 (384)
T ss_dssp HHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGSSSSTTTCT
T ss_pred HHHHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhcccccccccccccccccccccccccccc
Confidence 23333344555555554321 12345666666654 5578854310
Q ss_pred --------c---------cCCccHHHHHHcCCcEEEccCCCCCCCCC----------------------------CHHHH
Q 012333 310 --------M---------LGFAPIKEMLHADICVSLGTDGAPSNNRM----------------------------SIVDE 344 (466)
Q Consensus 310 --------~---------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~----------------------------~~~~~ 344 (466)
. .....++..++.|...+++|||.|+.... ...+.
T Consensus 264 d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~~~~~~~~~~df~~ap~G~~gle~ 343 (384)
T d2fvka2 264 DDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCT 343 (384)
T ss_dssp TCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTT
T ss_pred cccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCCCHHHhcccccccccccccccccCccccCCCCCccHHH
Confidence 0 01124455678899999999998863211 11111
Q ss_pred HHHHHHHhcccccccCCCCCCCC-CCHHHHHHHHhHHHHHHcCCCCcccc
Q 012333 345 MYLASLINKGREVFANGTTDPAA-LPAETVLRMATINGAKSVLWDNDIGS 393 (466)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~-ls~~~al~~~T~~~A~~lgl~~~~G~ 393 (466)
+.. .+.+.+ ....+ +|++++++++|.||||+|||.++||+
T Consensus 344 ~lp-ll~~~~--------v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 344 RMP-LLYDYG--------YLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp HHH-HHHHHT--------TTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred HHH-HHHHHH--------HhcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 111 111110 11112 58999999999999999999988985
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.52 E-value=8.7e-15 Score=115.32 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=57.3
Q ss_pred CcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhh-----hhccCCCeEEeCCCcEEeecccccccCC
Q 012333 15 LGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 15 ~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~-----~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
.....|++|+|+.|++.. . +..+||.|+||||++|++...+.. .....++++||++|++|+||+||+|+|+
T Consensus 61 ~~~~lDlvI~n~~Ivd~~---G-i~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf 136 (181)
T d1ejxc1 61 AADCVDLVLTNALIVDHW---G-IVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLA 136 (181)
T ss_dssp GGGSCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBC
T ss_pred ccccccEEEEccEEcCCC---C-cEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEE
Confidence 345689999999999743 2 366899999999999998653210 0123478999999999999999999999
Q ss_pred cc
Q 012333 90 SQ 91 (466)
Q Consensus 90 ~~ 91 (466)
..
T Consensus 137 ~~ 138 (181)
T d1ejxc1 137 DL 138 (181)
T ss_dssp CE
T ss_pred ee
Confidence 53
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.49 E-value=6.8e-14 Score=128.20 Aligned_cols=159 Identities=16% Similarity=0.050 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCC----------ch-H------HHHhhhccCCCCeeEEE
Q 012333 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH----------GT-V------TFLDKIEFLQNNLLSAH 281 (466)
Q Consensus 219 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~----------~~-~------~~~~~~~~~~~~~~~~H 281 (466)
..++..+.++++.+++.+..+.+|+.+..............+. .. . ..+......+. -.|
T Consensus 106 ~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~r~~~la~~~~~---~~h 182 (325)
T d1gkra2 106 AVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGC---RLI 182 (325)
T ss_dssp BCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHCC---EEE
T ss_pred cccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccccccCchHHHHHHHHHHHHHhhhcCc---cee
Confidence 4567788899999999999999998764322211111111010 00 0 11111122223 345
Q ss_pred eecCCh----hhHHHHHhcCCe--EEECccchhh-----------ccC---------CccHHHHHHcCCcEEEccCCCCC
Q 012333 282 TVWVNH----TEIGLLSRAGVK--VSHCPASAMR-----------MLG---------FAPIKEMLHADICVSLGTDGAPS 335 (466)
Q Consensus 282 ~~~~~~----~~~~~~~~~g~~--~~~~p~~~~~-----------~~~---------~~~~~~~~~~gi~~~~gsD~~~~ 335 (466)
..+++. +.++.+++.|.. +.+||+.... ..- ...+++.+..|...+++|||.|+
T Consensus 183 i~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~~~~~~k~~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh 262 (325)
T d1gkra2 183 VLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGH 262 (325)
T ss_dssp ECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECC
T ss_pred ccccccHHHHHhhhhhhhcCCceEEeecccccccchhhhhccCcccccchhhhhhhhhHHHHHHHhcCcceEEecCCCCC
Confidence 555553 335555666655 5677764321 011 12455678889999999999876
Q ss_pred CCCC------CH------------HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 336 NNRM------SI------------VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 336 ~~~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
.... ++ .-++.+...+.+ ..+|++++++.+|.|||+++||++++|
T Consensus 263 ~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~------------g~lsl~~~v~~~s~nPAki~gl~p~KG 325 (325)
T d1gkra2 263 PVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNK------------GRLSLERLVEVMCEKPAKLFGIYPQKG 325 (325)
T ss_dssp CGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGG------------TSSCHHHHHHHHTHHHHHHHTCTTTSS
T ss_pred CHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHc------------CCCCHHHHHHHHhHHHHHHhCCCCCCC
Confidence 4211 11 111111111222 249999999999999999999988887
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.49 E-value=2.8e-14 Score=109.40 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=52.7
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
+|++|+|++|+++++ ...+||+|+||||++|++... +++++||++|++|+||+||.|+|+.
T Consensus 1 mDllikn~~v~~~~~----~~~~di~I~dg~I~~ig~~~~-------~~~~~iDa~G~~v~Pg~i~~~~~~~ 61 (127)
T d1nfga1 1 MDIIIKNGTIVTADG----ISRADLGIKDGKITQIGGALG-------PAERTIDAAGRYVFPIAVGSDADIV 61 (127)
T ss_dssp CCEEEEEEEEEETTE----EEEEEEEEETTEEEEESSCCC-------CCSEEEECTTCEEEECSTTSBCCEE
T ss_pred CcEEEECCEEECCCC----CEEEEEEEECCEEEEeeCCCC-------CceEEEEeeceEEeeecccccccce
Confidence 589999999997532 356799999999999998643 4779999999999999999999984
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.47 E-value=3.5e-14 Score=105.34 Aligned_cols=64 Identities=13% Similarity=0.302 Sum_probs=52.4
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
+++|+|++|+++.+ .....+.+|+|++|+|++|++.... .+++++||++|++|+|||||.|.|-
T Consensus 2 ~~l~~n~~v~d~~~-~~~~~~~~I~I~~g~I~~i~~~~~~-----~~~~~vID~~G~~v~PGlid~h~~h 65 (102)
T d2r8ca1 2 TFLFRNGALLDPDH-PDLLQGFEILIEDGFIREVSDKPIK-----SSNAHVIDVKGKTIMPRIVPGAHAD 65 (102)
T ss_dssp EEEEEEEEECCTTS-SSCEEEEEEEEESSBEEEEESSCCC-----CSSCEEEECTTCEEEESCCTTSBCC
T ss_pred eEEEECeEEECCCC-CCcccCcEEEEECCEEEEccccCCC-----CCCCEEEeCCCCEEECceeeheeee
Confidence 58999999996543 4556778999999999999975432 2478999999999999999988753
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.44 E-value=4.1e-17 Score=123.81 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=75.9
Q ss_pred HcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCcc
Q 012333 321 HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 400 (466)
Q Consensus 321 ~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~A 400 (466)
+.|..++++||++..+..+..+..+..+ ... ......+++.++++++|.+||+.+++++++|+|++|+.|
T Consensus 9 n~G~~ltl~sdgp~~g~~m~~l~~i~~a------~~~----~~~~~il~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~a 78 (113)
T d2bb0a1 9 NIGQLLTMESSGPRAGKSMQDLHVIEDA------VVG----IHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSA 78 (113)
T ss_dssp EEEEECCCCCSSCCCGGGGTCCCCEEEE------EEE----EETTEEEEEEETTTTTTCEEEEEEECTTCEEECSTTSBC
T ss_pred hcCCeEecCCCCccccchhhhHHHhhhh------hhh----hccccccCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcc
Confidence 4577788899987665333322222111 100 112234788899999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 401 DMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 401 Dlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
||+|||.+++. .+.|......+..||++|++||+
T Consensus 79 d~~~~~~~~~~---------~~~y~~~~~~v~~vi~~G~iv~~ 112 (113)
T d2bb0a1 79 DLVIWQAPNYM---------YIPYHYGVNHVHQVMKNGTIVVN 112 (113)
T ss_dssp CEEEESSSSTT---------HHHHSCSSCCEEEEEETTEEEEE
T ss_pred cEEEecCCchh---------hchhhcCCCChhEEEECCEEEEe
Confidence 99999998332 33344556789999999999996
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.43 E-value=6.2e-14 Score=113.25 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=54.7
Q ss_pred ccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEE---eecccccccCCc
Q 012333 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL---LPGFVNTHVHTS 90 (466)
Q Consensus 17 ~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v---~PG~ID~H~H~~ 90 (466)
+|+|+||+|++|+|+++ ...++|+|+||||++|++..... .++++||++|++| +|||||+|+|+.
T Consensus 1 pm~dllikn~~v~~~~~----~~~~di~i~~g~I~~ig~~~~~~-----~~~~viDa~G~~V~p~~pg~~d~Hih~~ 68 (156)
T d2fvka1 1 PIYDLIIKNGIICTASD----IYAAEIAVNNGKVQLIAASIDPS-----LGSEVIDAEGAFITPILPGVSDADLVIW 68 (156)
T ss_dssp CCEEEEEESCEEECSSC----EEECEEEEETTEEEEEESCCCGG-----GEEEEEECTTCEEEECCTTTSBCCEEEE
T ss_pred CCccEEEECCEEECCCC----CEEEEEEEECCEEEEecCCCCCC-----CCCEEEECCCCEEeeecccccccceEEE
Confidence 48899999999997543 35679999999999999865421 3678999999997 699999999985
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.43 E-value=1.1e-13 Score=106.64 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=50.3
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
.++|+||+|+++++ ...+||+|+||+|++|++.... +++++||++|++|+||+||.|+|+.
T Consensus 1 k~likn~~i~~~~~----~~~~di~I~~g~I~~ig~~~~~------~~~~viDa~g~~v~Pg~i~~~~~~~ 61 (127)
T d1ynya1 1 KKWIRGGTVVTAAD----TYQADVLIEGERVVAIGHQLSV------NGAEEIDATGCYVIPIAVGSDADIV 61 (127)
T ss_dssp CEEEESCEEECSSC----EEECEEEEETTEEEEEECC----------CCEEEECTTSEEEECSTTSBCCEE
T ss_pred CEEEECcEEECCCC----CEEEeEEEECCEEEEecCCCCC------CCCEEEEhhhceeecccccccchhh
Confidence 37999999997543 2467999999999999986542 4679999999999999999999985
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.42 E-value=1.7e-13 Score=118.74 Aligned_cols=180 Identities=19% Similarity=0.169 Sum_probs=106.1
Q ss_pred EeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC------
Q 012333 212 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV------ 285 (466)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~------ 285 (466)
+..|..+..++..++..+..|.+++++|.+|.+..-.... ..+.+..++ .| ..|..|.
T Consensus 88 lKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gf-----------ve~T~~a~~---gR--tiH~~HtEGaGGG 151 (390)
T d4ubpc2 88 LKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGF-----------LEDTLRAIN---GR--VIHSFHVEGAGGG 151 (390)
T ss_dssp EEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCC-----------HHHHHHHHT---TC--CEEETTTTSTTSS
T ss_pred eecccccccCHHHHHHHHHHhhccCceEEEecCCccccee-----------hhhHHHHhC---Cc--eeecccCCCCCCC
Confidence 6778999999999999999999999999999754322111 111111111 11 2222221
Q ss_pred -ChhhHHHHHhcCCeE-EECccch---------------------------------hhccCCccHHHHHHcCCcEEEcc
Q 012333 286 -NHTEIGLLSRAGVKV-SHCPASA---------------------------------MRMLGFAPIKEMLHADICVSLGT 330 (466)
Q Consensus 286 -~~~~~~~~~~~g~~~-~~~p~~~---------------------------------~~~~~~~~~~~~~~~gi~~~~gs 330 (466)
.|+.++..-..++.. ++.|+.- .|...+..-.-|.|.|..-.++|
T Consensus 152 HaPDii~~~g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sS 231 (390)
T d4ubpc2 152 HAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMST 231 (390)
T ss_dssp STTTGGGGGGSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCC
T ss_pred CCchhHHhcCCCcccCCCCCCCCCCccCchhhhcCeEEeeccCCCCChhhHHHHhhcccchhhhhHHHhhhcCceeeecc
Confidence 122233222222221 1222110 01112223345789999999999
Q ss_pred CCCCCCCCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcC
Q 012333 331 DGAPSNNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 407 (466)
Q Consensus 331 D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~ 407 (466)
|+...+.-...+ ...+.+..+.+-++.................+...|.|||...|+++.+|||++||.||.+++..
T Consensus 232 DsQaMGRvgEvi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~ 309 (390)
T d4ubpc2 232 DALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHD 309 (390)
T ss_dssp CBTTSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHH
T ss_pred CcccccccchHHHhHHHHHHHHHHhccCCCCccccCCCchhhhcccccccChhHhcCcccccCcccCCcccCCccccC
Confidence 998776544443 34444444333332222211122345677889999999999999999999999999999555443
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.42 E-value=7.5e-14 Score=101.51 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=55.1
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCcc
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~~ 91 (466)
.++|+||+|+++.+ ..+..+.+|+|++|+|++|++.... +.+++++||++|++|+|||+|.|+|...
T Consensus 2 ktlI~~g~liDg~~-~~~~~~~~I~I~~~~I~~V~~~~~~----~~~~~~vID~~G~~v~PGL~~g~~~d~~ 68 (96)
T d2qs8a1 2 KTLIHAGKLIDGKS-DQVQSRISIVIDGNIISDIKKGFIS----SNDFEDYIDLRDHTVLPSIESGKLADLI 68 (96)
T ss_dssp CEEEEEEEECCSSC-SSCEEEEEEEEETTEEEEEEESCCC----CTTSSEEEEEEEEEEEESCCTTSBCCEE
T ss_pred eEEEECeEEEECCC-CccccCceEEEECCEEEEEcccccC----CCCCCEEEECCCCEeccCccccCcccEE
Confidence 58999999997544 4567888999999999999875322 2247799999999999999999999643
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.38 E-value=5.5e-11 Score=109.01 Aligned_cols=281 Identities=14% Similarity=0.074 Sum_probs=148.0
Q ss_pred CcEEee--cccccccCCcccccccccCCCCchHhhhhccccccCCC-ChhHHHHHHHHHHHHHHhcCceeeeecC----c
Q 012333 75 SQILLP--GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAG----G 147 (466)
Q Consensus 75 G~~v~P--G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~GvTtv~~~~----~ 147 (466)
|.+-.+ ||||+|+|++....... +...... ............+.++.++|||+++++. +
T Consensus 8 g~i~~~~~G~~d~H~Hl~~~~~~~~--------------~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~ 73 (331)
T d1i0da_ 8 GPITISEAGFTLTHEHICGSSAGFL--------------RAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIG 73 (331)
T ss_dssp EEEEHHHHCSEEEEECSEECCTTHH--------------HHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGT
T ss_pred CCCCHHHCCCEeeeeCcccCccccc--------------ccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 444444 99999999964221100 0001111 1223334445567788899999999875 2
Q ss_pred cCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhcc-CCCCCeEEEEeec-ccccCCHHHH
Q 012333 148 QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHH-AADGRIRIWFGIR-QIMNATDRLL 225 (466)
Q Consensus 148 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~l 225 (466)
.....+.+..+..+.+......+... ..........+............... .+......-.... .......+.+
T Consensus 74 ~d~~~l~~~~~~~~~~~~~~~g~h~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (331)
T d1i0da_ 74 RDVSLLAEVSRAADVHIVAATGLWFD---PPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKATPFQELVL 150 (331)
T ss_dssp CCHHHHHHHHHHHTCEEECEEECCSC---CCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEEEEecC---cCcccCccCHHHHHHHHHHhhhhhhccccCccceeeccccccccHHHHHHH
Confidence 44566677778888887665554321 11111122222222222222222111 1111111111111 1111123456
Q ss_pred HHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeec-CChhhHHHHHhcCCeEE--E
Q 012333 226 LETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVS--H 302 (466)
Q Consensus 226 ~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~g~~~~--~ 302 (466)
++.++.+++.+.++++|+......... ....+...+....+..+.|+.. ...+.++.+++.|..+. .
T Consensus 151 ~~~~~~a~~~g~pv~~h~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~ 220 (331)
T d1i0da_ 151 KAAARASLATGVPVTTHTAASQRDGEQ----------QAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDH 220 (331)
T ss_dssp HHHHHHHHHHCCCEEEECCGGGTHHHH----------HHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHhCCeEEeeccchhhhhhh----------hhhhhhhcccCCcceEEEecCCcchHHHHHHHHhcCCceeecc
Confidence 778889999999999998654332221 2233444445555667778763 44577888888887765 4
Q ss_pred Cccchhhc-----------c-----CCccHHHHHHcCC--cEEEccCCCCCCCCCCHH-H-HHH----------HHHHHh
Q 012333 303 CPASAMRM-----------L-----GFAPIKEMLHADI--CVSLGTDGAPSNNRMSIV-D-EMY----------LASLIN 352 (466)
Q Consensus 303 ~p~~~~~~-----------~-----~~~~~~~~~~~gi--~~~~gsD~~~~~~~~~~~-~-~~~----------~~~~~~ 352 (466)
+|...... . .....+++++.|. .+.++||+++..+....- . ... ...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~~~~~~~~~~g~~g~~~~l~~~~~ 300 (331)
T d1i0da_ 221 IPHSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWLFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIP 300 (331)
T ss_dssp TTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHHHHHCTTGGGHHHHTHHH
T ss_pred eeeeccchhhhccccCCccCCChhhhHHHHHHHHHhcCCCCEEECCCCCCcccccccCCCccccccCCCcHHHHHHHHHH
Confidence 44422100 0 0123456788887 468999997532211100 0 000 000010
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcc
Q 012333 353 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 391 (466)
Q Consensus 353 ~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~ 391 (466)
. ....|+|++++.+++|.||||+|||++++
T Consensus 301 ~---------~~~~gis~e~i~~i~~~NParlf~l~~k~ 330 (331)
T d1i0da_ 301 F---------LREKGVPQETLAGITVTNPARFLSPTLRA 330 (331)
T ss_dssp H---------HHHTTCCHHHHHHHHTHHHHHHHSCCCCC
T ss_pred H---------HHHcCCCHHHHHHHHHHHHHHHcCCCCCC
Confidence 0 01135999999999999999999998753
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.37 E-value=2.4e-13 Score=104.65 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=51.5
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
|.+||+|++|+++++ . ..+||+|+||+|++|++..+. +++++||++|++|+||+||.|.|+.
T Consensus 1 M~~likn~~v~~~~~--~--~~~Di~I~~g~I~~Ig~~~~~------~~~~vida~g~~v~P~~v~~~~~~~ 62 (128)
T d1k1da1 1 MTKIIKNGTIVTATD--T--YEAHLLIKDGKIAMIGQNLEE------KGAEVIDAKGCYVFPIVVGSDADLV 62 (128)
T ss_dssp CCEEEEEEEEECSSC--E--EEEEEEECSSBEEEEESSCCC------SSCCCEECTTCEEEECSTTSBCCEE
T ss_pred CCEEEECcEEECCCC--C--EEeeEEEECCEEEEEcCCCCC------CceEEeeeCCCeEeeeecccccceE
Confidence 468999999997542 2 357999999999999986532 4778999999999999998888864
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.36 E-value=7e-13 Score=85.41 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=45.8
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEee
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~P 80 (466)
++|++|+||+|+++. +.....++|+|++|||++|++.... ++.++||++|++|+|
T Consensus 1 P~DllIkn~~i~d~~--~~~~~~~di~I~~g~I~~Ig~~~~~------~~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 1 PFDYILSGGTVIDGT--NAPGRLADVGVRGDRIAAVGDLSAS------SARRRIDVAGKVVSP 55 (55)
T ss_dssp CBSEEEESSEECCSS--SCCCEECEEEEETTEEEEEECCTTS------CBSCEEECTTCEEEE
T ss_pred CCcEEEECCEEECCC--CCceeEEEEEEECCEEEEEccCCCC------CCCEEEECCCCEECC
Confidence 479999999999654 3445678999999999999975432 477899999999999
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.33 E-value=2.7e-12 Score=112.75 Aligned_cols=233 Identities=10% Similarity=-0.037 Sum_probs=108.4
Q ss_pred HHHhcCceeeeecCccC---HHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCCCCCeE
Q 012333 133 ELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR 209 (466)
Q Consensus 133 ~~~~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (466)
.++++||||+++++... .....+..................+.. ....................+... ..+.
T Consensus 23 ~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 97 (267)
T d2icsa2 23 IGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIV-AQDELADLSKVQASLVKKAIQELP----DFVV 97 (267)
T ss_dssp HTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTS-SSCTTSSGGGCCHHHHHHHHHHCT----TTEE
T ss_pred HHhCCeeEEEECCCCCChhHHHHHHHHHHhhhcchhhcccccccccc-cccccCChhhcCHHHHHHHHhhhh----hhhh
Confidence 36889999999987543 344455555555544332222111110 000100000111122233333322 2333
Q ss_pred EEEeec---ccccCCHHHHH-HHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC
Q 012333 210 IWFGIR---QIMNATDRLLL-ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (466)
Q Consensus 210 ~~~~~~---~~~~~~~~~l~-~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 285 (466)
...... .........+. .....+...+..+..|......................... .........+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 173 (267)
T d2icsa2 98 GIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCF----NGKENGILDQATDK 173 (267)
T ss_dssp EEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHCCTTCEEESTT----CCSTTSSEETTTTE
T ss_pred hhhhhhcccccccCCcHHHHHHHHHHHHhcccceeeecccchhHHHHHHhhhhccchhHHHh----hhhccccccccccc
Confidence 322221 11222223333 33344556688899998776554433332211110000000 00001112222222
Q ss_pred ChhhHHHHHhcCCeEEECccchhhccCCccHHH-HHHcCCcEEEccCCCCC----CCCCCHHHHHHHHHHHhcccccccC
Q 012333 286 NHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKE-MLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFAN 360 (466)
Q Consensus 286 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~-~~~~gi~~~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (466)
..+........+......+.... ........ ....++...+++|..+. .+..++..+++.+. ..
T Consensus 174 ~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~------- 242 (267)
T d2icsa2 174 IKDFAWQAYNKGVVFDIGHGTDS--FNFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLR--VV------- 242 (267)
T ss_dssp ECHHHHHHHHTTCEEECCCTTTS--CCHHHHHHHHHTTCCCSBCCCCBCHHHHHSSSCCCHHHHHHHHH--HH-------
T ss_pred hHHHHHHHHhcCCeeeccCcchh--hhHHHHHHhhhhcccceeccceeecCCCCcchHHHHHHHHHHHH--Hc-------
Confidence 34555666667776655543221 11122233 33445566666665521 12345666666542 21
Q ss_pred CCCCCCCCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 361 GTTDPAALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 361 ~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
|||+.|+|+++|.|||++|||++ +|
T Consensus 243 ------Gls~~eal~~aT~npA~~lgl~d-rG 267 (267)
T d2icsa2 243 ------GYDWPEIIEKVTKAPAENFHLTQ-KG 267 (267)
T ss_dssp ------TCCHHHHHHTTTHHHHHHTTCTT-SS
T ss_pred ------CCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 49999999999999999999965 56
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.33 E-value=3.3e-12 Score=110.54 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=103.9
Q ss_pred EeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC------
Q 012333 212 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV------ 285 (466)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~------ 285 (466)
+.+|..+..++..++..+..|.++++++.+|.+....... ..+.+..++ .| ..|..|.
T Consensus 87 lKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gf-----------ve~T~~a~~---gR--tiH~~HtEGaGGG 150 (389)
T d1e9yb2 87 FKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGC-----------VEDTMAAIA---GR--TMHTFHTEGAGGG 150 (389)
T ss_dssp EEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCC-----------HHHHHHHHT---TC--CEEETTTTSTTSC
T ss_pred eeccccccCCHHHHHHHHHHHHhhCceEEecCCCcccccc-----------hhhHHHHhC---CC--cceeeecCCCCCC
Confidence 6779999999999999999999999999999865322111 111122221 11 1222221
Q ss_pred -ChhhHHHHHhcCCeE-EECccch---------------------------------hhccCCccHHHHHHcCCcEEEcc
Q 012333 286 -NHTEIGLLSRAGVKV-SHCPASA---------------------------------MRMLGFAPIKEMLHADICVSLGT 330 (466)
Q Consensus 286 -~~~~~~~~~~~g~~~-~~~p~~~---------------------------------~~~~~~~~~~~~~~~gi~~~~gs 330 (466)
.|+.++..-..++.. ++.|+-- .|...+..-.-|.|.|..-.++|
T Consensus 151 HAPDii~~~~~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sS 230 (389)
T d1e9yb2 151 HAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSS 230 (389)
T ss_dssp STTTGGGGGGSTTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECC
T ss_pred CccHHHHHccCCCccCCCCCCCCCcccccHHHhhchhhhhccCCCCCchhHHHHhhcccchhhhhHHHhhccCceeeecc
Confidence 133333333333332 2222211 01111223345789999999999
Q ss_pred CCCCCCCCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCcccccccCCccC
Q 012333 331 DGAPSNNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 401 (466)
Q Consensus 331 D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~AD 401 (466)
|+...+.-...+ ...+.+..+...++............-....+.++|.|||...|+++.+|||++||.|+
T Consensus 231 DsqaMGRvgEvi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~ 302 (389)
T d1e9yb2 231 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHH 302 (389)
T ss_dssp CTTSSCCTTSHHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcCCccCCCcchHHHHhhhhhcccChHHhcCchhccCccccccccc
Confidence 999876544443 44444444333333222221222335577889999999999999999999999999764
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.32 E-value=1.2e-12 Score=100.31 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=53.4
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecc---cccccCCc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF---VNTHVHTS 90 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~---ID~H~H~~ 90 (466)
|+|++|+||+|++.+ . ...+||+|+||||++|++.... .++.++||++|++|+||+ .|+|.|+.
T Consensus 1 M~dllIkn~~iv~~~---~-~~~~Di~I~dgkI~~i~~~~~~-----~~a~~~iDa~g~~v~P~~~vG~DAD~~l~ 67 (126)
T d1gkra1 1 MFDVIVKNCRLVSSD---G-ITEADILVKDGKVAAISADTSD-----VEASRTIDAGGKFVMPTLQVGSDADLLIL 67 (126)
T ss_dssp CEEEEEEEEEEEETT---E-EEEEEEEEETTEEEEEESCCTT-----CCEEEEEECTTCEEEESCCTTSBCCEEEE
T ss_pred CccEEEECcEEECCC---C-CEEEeEEEECCEEEEEcCcCCc-----ccceEEeehhhcccccceeecccchhhee
Confidence 789999999999642 2 3457999999999999986542 136689999999999998 99999974
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.26 E-value=1.8e-11 Score=111.18 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=86.2
Q ss_pred cccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhc----------CCCCch---HHHHhhhccCCCCeeEEEee
Q 012333 217 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR----------KVDHGT---VTFLDKIEFLQNNLLSAHTV 283 (466)
Q Consensus 217 ~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~H~~ 283 (466)
....+...+.++++.+...+..+.+|+.............. ...... ...+...+..+.+..+.|..
T Consensus 100 ~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~~~~~~~~~~~~~~rp~~~E~~ai~r~~~la~~~~~~~~i~HiS 179 (310)
T d1xrta2 100 SPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHVS 179 (310)
T ss_dssp SCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------CHHHHHHHHHHHHHHHCCEEEESCCC
T ss_pred CCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhhhhhhhcccccCccccchHHHHHHHHHHHHHHhhcCCeeeccccc
Confidence 34467888999999999999999999865332111111000 000000 11112222233444444443
Q ss_pred cCC-hhhHHHHHhcCCe--EEECccchhhc--------------------cCCccHHHHHHcCCcEEEccCCCCCCCCCC
Q 012333 284 WVN-HTEIGLLSRAGVK--VSHCPASAMRM--------------------LGFAPIKEMLHADICVSLGTDGAPSNNRMS 340 (466)
Q Consensus 284 ~~~-~~~~~~~~~~g~~--~~~~p~~~~~~--------------------~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~ 340 (466)
.-. -+.++.+++.|.. +.+||...... .....+++.+..|...+++|||.|+....+
T Consensus 180 t~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~~~~~~k~~PplR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K 259 (310)
T d1xrta2 180 TKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK 259 (310)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECGGGGC----------------------CCHHHHHHHHHHTCSCEECCCBCCCCC---
T ss_pred hHHHHHHHHHHHHcCCceecchHHHHhhccccccccccchhhhcccCCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHc
Confidence 211 1345555566654 56888754211 112345567788999999999998742111
Q ss_pred --HH------------HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 341 --IV------------DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 341 --~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
.+ -++.+ ..+.+ ..++++++++.+|.||||++||
T Consensus 260 ~~~~~~~~G~~g~e~~lp~l~-~~v~~------------g~l~l~~~v~~~s~npAki~gL 307 (310)
T d1xrta2 260 ELVEFAMPGIIGLQTALPSAL-ELYRK------------GIISLKKLIEMFTINPARIIGV 307 (310)
T ss_dssp --------CCCCGGGHHHHHH-HHHHT------------TSSCHHHHHHHHTHHHHHHHTC
T ss_pred cCcccCCCCceeHHHHHHHHH-HHHHc------------CCCCHHHHHHHHHHHHHHHhCC
Confidence 01 01111 11222 2499999999999999999999
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.24 E-value=1.7e-12 Score=98.60 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=49.7
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCC
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~ 89 (466)
++||+||+|++.++ ..++||+|+||||++|++....+ +++++||++|++|+||..++|.|.
T Consensus 1 pllIkng~iv~~~~----~~~~Di~I~~gkI~~Ig~~l~~~-----~~~~viDa~G~~v~~g~d~~~~d~ 61 (123)
T d1gkpa1 1 PLLIKNGEIITADS----RYKADIYAEGETITRIGQNLEAP-----PGTEVIDATGKYVFPGADLVVYDP 61 (123)
T ss_dssp CEEEESCEEEETTE----EEECEEEESSSBCCEEESCCCCC-----TTCEEEECTTSEEEECCCEEEEET
T ss_pred CEEEECcEEECCCC----CEEeeEEEECCEEEEeecCCCCC-----cchhhhhhccceEecCcceEEEec
Confidence 48999999997542 35789999999999999865431 367999999999999997666665
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.21 E-value=2.9e-12 Score=83.89 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=46.0
Q ss_pred ccccCCccCEEEEcCCCCCCCC-cCCcccceecccCCCCeeEEEEccEEEEECCeeeeccHHHHHH
Q 012333 393 SLEAGKKADMVVVDPFSWPMVP-VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 457 (466)
Q Consensus 393 ~i~~G~~ADlvv~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 457 (466)
+|++|++|||||||++...... +.++. ..+..|..|||||++++++|++++..+|++++
T Consensus 1 ri~~G~~ADlvvfDp~~i~d~~~~~~~~------~~~~Gi~~v~VnG~~v~~~g~~~~~~~G~~lr 60 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPATVADSATFEHPT------ERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLN 60 (61)
T ss_dssp SCCTTSBCCEEEECTTTCBCCCCSSSTT------CCCBSEEEEEETTEEEEETTEECSCCCCCBCC
T ss_pred CCCCCcCCCEEEECHHHccCcccccccc------cccceeEEEEECCEEEEECCEECCCCCCEEee
Confidence 4899999999999999554322 22221 23468999999999999999999988888764
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.19 E-value=5.6e-13 Score=94.24 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=52.1
Q ss_pred HHHHHHhHHHHHHcCCCCc--ccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEECC
Q 012333 372 TVLRMATINGAKSVLWDND--IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 445 (466)
Q Consensus 372 ~al~~~T~~~A~~lgl~~~--~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 445 (466)
++++.+|++||++++++++ .|+|++|++|||++++.| |++|. +.+ .++..||++|+++.++|
T Consensus 32 ~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgn-----PL~dI-~~l------~~i~~Vik~G~v~k~e~ 95 (95)
T d3be7a1 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIEN-----PLANI-RTL------EEVAFVMKEGKVYKREG 95 (95)
T ss_dssp EEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSC-----TTTCG-GGT------TSCCEEEETTEEEEECC
T ss_pred HHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCC-----chhhh-HHh------cCCCEEEECCEEEcCCC
Confidence 5688899999999999887 499999999999999999 66652 222 68999999999777664
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.15 E-value=1.2e-12 Score=97.08 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=59.9
Q ss_pred HhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCC--cCCcccceecccCCCCeeEEEEccEEEE
Q 012333 377 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP--VHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 377 ~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
+|..+|+++++.+++|+|++||.||++++|.+.....| .++++..+++..+++.|+.|||+|+.||
T Consensus 42 at~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~~~~~d~L~~li~~gd~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 42 DKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRYVCGNEIF 109 (109)
T ss_dssp GGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGGSCHHHHHHHHHHHCCGGGEEEEEETTEEEC
T ss_pred HHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhhhhhhhHHHHheeeCCCCceeEEEECCEECC
Confidence 58899999999999999999999999999988655555 5688899999999999999999999997
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.9e-12 Score=114.00 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=51.6
Q ss_pred CccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 313 FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 313 ~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
..+...+++.|+.+.++||..+.+ ..+++.+++.+... . +||+.++|+++|.||||+|||++++|
T Consensus 233 ~~~~~~~~~~g~~~~~gtd~~~g~-~~~l~~~~~~~v~~--~------------gls~~~al~~aT~n~A~~LGldd~iG 297 (297)
T d1yrra2 233 IFAGKTIYYRNGLCVDENGTLSGS-SLTMIEGVRNLVEH--C------------GIALDEVLRMATLYPARAIGVEKRLG 297 (297)
T ss_dssp EETTEEEEECSSCEECTTCCEEEB-CCCHHHHHHHHHHH--H------------CCCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred cCCcceEEEeCCEEEecCCCCccc-hhhHHHHHHHHHHH--h------------CCCHHHHHHHHHHHHHHHhCCCcCcC
Confidence 456677788999999999986543 35678887654321 1 49999999999999999999999887
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=5.3e-09 Score=93.63 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=129.4
Q ss_pred HHHHHHHhcCceeeeecC----ccCHHHHHHHHHHhCCeEEeecccccCCCCCCcccccCChHHHHHHHHHHHHHhccCC
Q 012333 129 LCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAA 204 (466)
Q Consensus 129 ~~~~~~~~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (466)
..+..+.+.||++++++. +.....+.+..+..+.+++...++.... ..+........+...+...+.+.+.....
T Consensus 37 ~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~~-~~p~~~~~~~~~~~~~~~~~~i~~~~~~~ 115 (291)
T d1bf6a_ 37 QEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDA-FFPEHVATRSVQELAQEMVDEIEQGIDGT 115 (291)
T ss_dssp HHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCGG-GCCTHHHHSCHHHHHHHHHHHHHTCSTTS
T ss_pred HHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCcc-cCCcccCcCCHHHHHHHHHHHHHHHHhcc
Confidence 345667889999998754 2356667777888898877665544211 11222222233333333333333322222
Q ss_pred CCCeEEE--EeecccccCC---HHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeE
Q 012333 205 DGRIRIW--FGIRQIMNAT---DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLS 279 (466)
Q Consensus 205 ~~~i~~~--~~~~~~~~~~---~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (466)
...+... .+... +..+ .+.++..+++|+++++++.+|+........ ....+...+.-..+.++
T Consensus 116 ~~~~~~IGe~g~d~-~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~~~~~e-----------~~~~l~~~~~~~~~~~~ 183 (291)
T d1bf6a_ 116 ELKAGIIAEIGTSE-GKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLE-----------QLALLQAHGVDLSRVTV 183 (291)
T ss_dssp SCCEEEEEEEECBT-TBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSHHH-----------HHHHHHHTTCCGGGEEE
T ss_pred CceEEEEEeecccc-CCCCHHHHHHHHHHHHHHHHhCCCeEEeccchhhhHH-----------HHHHHHHhCCCccccee
Confidence 2222211 12222 1222 345788899999999999999854321111 23344444444455677
Q ss_pred EEe-ecCChhhHHHHHhcCCeEEECccchhhc----cCCccHHHHHHcC--CcEEEccCCCCCC-------CCCCHHHHH
Q 012333 280 AHT-VWVNHTEIGLLSRAGVKVSHCPASAMRM----LGFAPIKEMLHAD--ICVSLGTDGAPSN-------NRMSIVDEM 345 (466)
Q Consensus 280 ~H~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~----~~~~~~~~~~~~g--i~~~~gsD~~~~~-------~~~~~~~~~ 345 (466)
.|+ ..-+.+.++.+.+.|..+.+.-...... .....++++++.+ -++.++||++-.. .....+-..
T Consensus 184 ~H~~f~~~~e~~~~~~~~G~~i~~~g~~~~~~~~~~~~~~~~~~lv~~~p~drilleTD~p~~~p~~~~g~~~~~~~~~~ 263 (291)
T d1bf6a_ 184 GHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTT 263 (291)
T ss_dssp CCCCSSCCHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCCTTHHHHT
T ss_pred cccCCCCCHHHHHHHHhcCeeEEecccccccCCcHHHhHHHHHHHHHhCCchhEEEecCCCCccccccCCCCCchhHHHH
Confidence 788 5567788999999999987652211100 1123467777776 3589999986321 111111111
Q ss_pred HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 346 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
....+.. .|+|.+++-+..+.||++++
T Consensus 264 ~~~~l~~-------------~g~s~e~i~~i~~~Np~rlf 290 (291)
T d1bf6a_ 264 FIPQLRQ-------------SGFSQADVDVMLRENPSQFF 290 (291)
T ss_dssp HHHHHHH-------------TTCCHHHHHHHHTHHHHHHC
T ss_pred HHHHHHH-------------cCCCHHHHHHHHHHHHHHHc
Confidence 1111111 15999999999999999987
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.07 E-value=2.2e-09 Score=98.61 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC--ChhhHHHHHhcCCeEEE
Q 012333 225 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 225 l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~g~~~~~ 302 (466)
...+++.|++.|+++.+|+.+.... .....+.+.+..++. ..+.||..+ +++.++.+++.++.+.+
T Consensus 203 ~~~~f~~ar~~gl~it~HaGE~~~~-----------~~~~~i~~ai~~l~~-~RIgHGv~~~~d~~l~~~l~~~~I~lei 270 (357)
T d2amxa1 203 HKDVYHSVRDHGLHLTVHAGEDATL-----------PNLNTLYTAINILNV-ERIGHGIRVSESDELIELVKKKDILLEV 270 (357)
T ss_dssp GHHHHHHHHHTTCEEEEEESCCTTC-----------SSSHHHHHHHHTSCC-SEEEECGGGGGCHHHHHHHHHHTCEEEE
T ss_pred hHHHHHHHHhcCCcccccccccCCC-----------CChHHHHHHHHccCC-cccccchheecCHHHHHHHHHhCceEEE
Confidence 5678899999999999999884321 012233344444443 348999998 67889999999999999
Q ss_pred Cccchhhcc-----CCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 012333 303 CPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 377 (466)
Q Consensus 303 ~p~~~~~~~-----~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 377 (466)
||.+++... ...|++++++.|++++++||.+.... .++..+...+.... ++|.++.. .+
T Consensus 271 CPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f~-t~ls~ey~~~~~~~--------------~ls~~el~-~l 334 (357)
T d2amxa1 271 CPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFL-SNINDNYEKLYIHL--------------NFTLEEFM-IM 334 (357)
T ss_dssp CHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHHT-CCHHHHHHHHHHHH--------------CCCHHHHH-HH
T ss_pred CCcchhhhccCCCcccCHHHHHHHCCCeEEEeCCCchhhC-CCHHHHHHHHHHHc--------------CCCHHHHH-HH
Confidence 999997662 34589999999999999999864221 24666655443221 48998855 56
Q ss_pred hHHHHHHcCCC
Q 012333 378 TINGAKSVLWD 388 (466)
Q Consensus 378 T~~~A~~lgl~ 388 (466)
+.|+-+...++
T Consensus 335 ~~nsi~~sF~~ 345 (357)
T d2amxa1 335 NNWAFEKSFVS 345 (357)
T ss_dssp HHHHHHHCCSC
T ss_pred HHHHHHHhCCC
Confidence 77777766553
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.05 E-value=2.4e-09 Score=98.19 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHHHHHhccCCCCCeEEEEeeccccc--CCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 183 VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMN--ATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
...+.+.+....+++++..+.|...+. .+..+.+. .+.+++.++.+.+.++|..+..|....
T Consensus 100 ~~at~~ei~~M~~ll~eal~~GA~G~S--tgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~r~~ 163 (358)
T d1m7ja3 100 REATADEIQAMQALADDALASGAIGIS--TGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDE 163 (358)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCCEEE--EETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCS
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCcccc--cCCcccccccCCHHHHHHHHHHHHhcCCeeeeeeccc
Confidence 345667777778888777666544443 55555544 578899999999999999999998653
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=99.03 E-value=3.5e-10 Score=87.51 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=56.2
Q ss_pred cccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh-------hhhccCCCeEEeCCCcEEeecccccccC
Q 012333 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVH 88 (466)
Q Consensus 16 ~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~-------~~~~~~~~~~iD~~G~~v~PG~ID~H~H 88 (466)
....|++|.|+.|++. .-+.++||.|+||+|+.||+...+. ...-+.++++|.++|+++.||-||.|.|
T Consensus 64 ~~~~d~vitn~~i~d~----~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvH 139 (180)
T d4ubpc1 64 ENVLDLLLTNALILDY----TGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKF 139 (180)
T ss_dssp TTBCSEEEEEEEEEET----TEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGG
T ss_pred CCcceEEEeeEEEecC----CCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhh
Confidence 3467999999988853 2346789999999999999876542 1222357799999999999999999999
Q ss_pred C
Q 012333 89 T 89 (466)
Q Consensus 89 ~ 89 (466)
+
T Consensus 140 F 140 (180)
T d4ubpc1 140 F 140 (180)
T ss_dssp T
T ss_pred c
Confidence 8
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=2.2e-10 Score=88.87 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=51.1
Q ss_pred eEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecc-cccccCCc
Q 012333 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF-VNTHVHTS 90 (466)
Q Consensus 20 ~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~-ID~H~H~~ 90 (466)
.+||+||+|++.+ .. ..+||+|+||+|++|+.....+ .++++||++|++|+||. .|+|.|+.
T Consensus 2 k~lIkng~iv~~~--~~--~~~DilIedG~I~~Ig~~l~~~-----~~a~vIDa~G~~v~~~~G~dAdl~i~ 64 (142)
T d1kcxa1 2 RLLIRGGRIINDD--QS--FYADVYLEDGLIKQIGENLIVP-----GGVKTIEANGRMVIIAVGSDADVVIW 64 (142)
T ss_dssp CEEEESCEEECSS--CE--EECEEEEETTEEEEEESSCCSC-----SSCEEEECTTCEEECCTTSBCCEEEE
T ss_pred cEEEECCEEECCC--Cc--EEeeEEEECCEEeEEeccCCCC-----ccceeechhhcceeecccccceEEEE
Confidence 4899999999743 22 3569999999999999765421 36799999999999997 99999985
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1e-09 Score=97.54 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 367 ALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 367 ~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
++|++++++++|+|||++|||++ +|
T Consensus 260 gls~~~al~~aT~npAr~lGL~~-kG 284 (284)
T d1onwa2 260 DFSISDALRPLTSSVAGFLNLTG-KG 284 (284)
T ss_dssp CCCHHHHHGGGTHHHHHHTTCTT-CS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 49999999999999999999954 66
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.92 E-value=2.1e-09 Score=83.12 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCCcccceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhh-------hhhccCCCeEEeCCCcEEeecc---
Q 012333 13 GSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGF--- 82 (466)
Q Consensus 13 ~~~~~~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~-------~~~~~~~~~~iD~~G~~v~PG~--- 82 (466)
.......|++|.|+.|++.. -+.++||.|+||+|+.||+...+. ...-+..+++|.++|+++.||-
T Consensus 60 ~~~~~~~D~vitna~iid~~----Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlV 135 (180)
T d1e9yb1 60 NPSKEELDLIITNALIVDYT----GIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLV 135 (180)
T ss_dssp SCCTTCCSEEEEEEEEEETT----EEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEE
T ss_pred CCCccccceEEEeeEEeccC----CeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceE
Confidence 33344689999999999632 356789999999999999876531 1223346899999999999996
Q ss_pred -cccccCC
Q 012333 83 -VNTHVHT 89 (466)
Q Consensus 83 -ID~H~H~ 89 (466)
||+|.|+
T Consensus 136 lwd~h~hg 143 (180)
T d1e9yb1 136 LWSPAFFG 143 (180)
T ss_dssp EECTTTTT
T ss_pred EEchhhcC
Confidence 9999997
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=8.6e-08 Score=87.70 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC--ChhhHHHHHhcCCeEE
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVS 301 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~g~~~~ 301 (466)
...++++.+++.|+++.+|+.+.... ......+..++. ..|.||..+ .++.++++++.++.+.
T Consensus 193 ~~~~~f~~ar~~gl~~t~HaGE~~~~--------------~~i~~ai~~l~~-~RIGHG~~l~~d~~l~~~~~~~~I~lE 257 (349)
T d1a4ma_ 193 GHVEAYEGAVKNGIHRTVHAGEVGSP--------------EVVREAVDILKT-ERVGHGYHTIEDEALYNRLLKENMHFE 257 (349)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSSCH--------------HHHHHHHHTSCC-SEEEECGGGGGSHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCceeeccCCCCCh--------------HHHHHHHHHhCC-cccCCceecccCHHHHHHhhhcCceEE
Confidence 46678889999999999999886432 222222222332 359999998 5688999999999999
Q ss_pred ECccchhhc-----cCCccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 012333 302 HCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 376 (466)
Q Consensus 302 ~~p~~~~~~-----~~~~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 376 (466)
+||.+|... ....|++.+++.|++++++||.+.... .++..+...+.. . .+++.+++. .
T Consensus 258 vCptSN~~~~~~~~~~~HP~~~~~~~gv~v~i~TDDp~~f~-t~Ls~Ey~~a~~--~------------~~l~~~~l~-~ 321 (349)
T d1a4ma_ 258 VCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFK-STLDTDYQMTKK--D------------MGFTEEEFK-R 321 (349)
T ss_dssp ECHHHHHHSSSSCTTSCCHHHHHHHTTCCEEECCBCTTTTT-CCHHHHHHHHHH--T------------TTCCHHHHH-H
T ss_pred EcccccccccccCchhhHHHHHHHHCCCeEEEeCCCccccC-CCHHHHHHHHHH--H------------hCcCHHHHH-H
Confidence 999999765 234689999999999999999976543 367777655432 1 148888855 5
Q ss_pred HhHHHHHHcCCC
Q 012333 377 ATINGAKSVLWD 388 (466)
Q Consensus 377 ~T~~~A~~lgl~ 388 (466)
+..|+-+.-.++
T Consensus 322 l~~nsi~~sf~~ 333 (349)
T d1a4ma_ 322 LNINAAKSSFLP 333 (349)
T ss_dssp HHHHHHHTSSCC
T ss_pred HHHHHHHHhCCC
Confidence 556776666653
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.85 E-value=2.2e-09 Score=83.78 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=51.0
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeec-ccccccCCcc
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG-FVNTHVHTSQ 91 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG-~ID~H~H~~~ 91 (466)
..+||+||+|++.+ . ...+||+|+||+|..|+.+... ..++++||++|++|+|+ ..|+|+|+..
T Consensus 2 ~~iLIkng~iv~~~---~-~~~~DIlI~~G~I~~I~~~i~~-----~~~~~iida~gk~v~i~~G~dad~~i~d 66 (150)
T d2ftwa1 2 GTILIKNGTVVNDD---R-YFKSDVLVENGIIKEISKNIEP-----KEGIKVVDATDKLLLIDVGCDGDIVIWD 66 (150)
T ss_dssp CCEEEESCEEECSS---C-EEECEEEEETTEEEEEESCCCC-----CSSCCEEECTTCEEECSTTSBCCEEEEE
T ss_pred CCEEEECCEEECCC---C-cEEeeEEEECCEEEEEeccCCC-----CCccEEEecccceeeeecCccCceEEEe
Confidence 46999999999632 2 3457999999999999986542 13679999999988665 5999999853
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=98.85 E-value=6.4e-09 Score=90.00 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=95.4
Q ss_pred EeecccccCCHHHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecC------
Q 012333 212 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV------ 285 (466)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~------ 285 (466)
+..|..+..++..++..+..|.++++++.+|.+..-.... ..+.+..++ .| ..|..|.
T Consensus 87 lKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gf-----------vedT~~a~~---gR--tiH~~H~EGaGGG 150 (385)
T d1ejxc2 87 LKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGF-----------VEDTLAAIG---GR--TIHTFHTEGAGGG 150 (385)
T ss_dssp EEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCC-----------HHHHHHHHT---TC--CEEESSTTSTTSS
T ss_pred ecCCcccccChHHHHHHHHhHhhcCceEEEeccccccccc-----------chhhHHHhC---CC--ceeeeecccCCCC
Confidence 6678889999999999999999999999999865322111 111122221 11 1222221
Q ss_pred -ChhhHHHHHhcCCe-EEECccch---------------------------------hhccCCccHHHHHHcCCcEEEcc
Q 012333 286 -NHTEIGLLSRAGVK-VSHCPASA---------------------------------MRMLGFAPIKEMLHADICVSLGT 330 (466)
Q Consensus 286 -~~~~~~~~~~~g~~-~~~~p~~~---------------------------------~~~~~~~~~~~~~~~gi~~~~gs 330 (466)
.|+.++.....++. .++.|+-- .|...+..-.-|.|.|..-.++|
T Consensus 151 HAPDii~~~~~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sS 230 (385)
T d1ejxc2 151 HAPDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSS 230 (385)
T ss_dssp STTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEEC
T ss_pred ccchhhHhhccCcccCCCCCCCCCCccCchHhhCCceeecccCCCCChhHHhhhhccccchhhhhHHHhhccCceeeecc
Confidence 12333333322322 22333211 01111223345789999999999
Q ss_pred CCCCCCCCCCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 331 DGAPSNNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 331 D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
|+...+.-...+ ...+.+..+..-++............-....+.++|.|||...|+++.+|..
T Consensus 231 DsQaMGRvGEvi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMF 295 (385)
T d1ejxc2 231 DSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMF 295 (385)
T ss_dssp CTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCG
T ss_pred cccccCcCCcchhhhHHHHHHHHHhhccCCCCCCCCcchHHHhhhhhhccChHHHcCccceeccc
Confidence 999776544433 4444444443333322221112234567788999999999999999877743
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.75 E-value=7.6e-09 Score=76.94 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=47.2
Q ss_pred cceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecc
Q 012333 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF 82 (466)
Q Consensus 18 ~~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ 82 (466)
|++++|+||+|+++. .......||+|++|+|++|++.... +.+++||++|++++||+
T Consensus 1 m~~~likng~viDp~--~g~~~~~DllI~~GkI~~I~~~i~~------~~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 1 MLKLIVKNGYVIDPS--QNLEGEFDILVENGKIKKIDKNILV------PEAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CCEEEEESCEEEEGG--GTEEEECEEEEETTEEEEEESSCCC------SSEEEEECTTSEEEECC
T ss_pred CceeEEeCeEEECCC--CCccceeeEEEECCEEEEeecCCCc------ccceEEehhccccccee
Confidence 678999999999643 4455677999999999999975432 46689999999999998
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.61 E-value=1e-09 Score=80.35 Aligned_cols=65 Identities=25% Similarity=0.199 Sum_probs=53.4
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEE
Q 012333 368 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 441 (466)
Q Consensus 368 ls~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 441 (466)
+.+++.+...|.++++.+.+.++.++|++||.|||+|||.+. +..+.|......++.||++||+|
T Consensus 38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~---------~~~l~Y~~g~~~~~~v~~~G~~v 102 (103)
T d2puza1 38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIER---------PAELVYRIGFNPLHARIFKGQKV 102 (103)
T ss_dssp EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSS---------TTHHHHCBSCCCEEEEEETTEEC
T ss_pred cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCC---------HHHHHHhhcCCChhEEEECCEEc
Confidence 334445556677899999999999999999999999999862 34667777788999999999986
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=8.3e-08 Score=87.84 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhH---HHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC-hhhHHHHHhcC-
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQ---VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG- 297 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~g- 297 (466)
..+....+..+..+..+..|+........ ...+.. .....+......+. ..|..+++ .+.++.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~eae~~----~~~~~~~l~~~~~~---~~Hi~HiSt~~~v~~ir~~~~ 189 (343)
T d2eg6a1 117 DAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFI----ESVMEPLRQRLTAL---KVVFEHITTKDAADYVRDGNE 189 (343)
T ss_dssp GGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHHH----HHTHHHHHHHCTTC---CEEECSCCSHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHhCchhhhcCccccccccccchhhhhH----HHHHHHHHhhccCc---eEEEEecchhHHHHHHHhcCC
Confidence 34556677778888888888754321100 000000 00111122222223 34555554 56677777665
Q ss_pred -CeEEECccchhh-------------ccCCccHH----------HHHHcCCcEEEccCCCCCC-------------CCCC
Q 012333 298 -VKVSHCPASAMR-------------MLGFAPIK----------EMLHADICVSLGTDGAPSN-------------NRMS 340 (466)
Q Consensus 298 -~~~~~~p~~~~~-------------~~~~~~~~----------~~~~~gi~~~~gsD~~~~~-------------~~~~ 340 (466)
+.+.+||+.... ..-.+|++ .+++.++.++++|||+|+. ....
T Consensus 190 ~vt~EvtPHhL~L~~~d~~~~~~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~~~~~~~g~~g~e 269 (343)
T d2eg6a1 190 RLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAP 269 (343)
T ss_dssp TEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSTTBCCCCCCTT
T ss_pred CcceeecCcHHHhhhhhhhcCCCccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCcccccccccccccccCChH
Confidence 556788874421 01123333 3344567789999999874 1112
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCccccc
Q 012333 341 IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 394 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~G~i 394 (466)
..-.+....+.. .++++++++++|.|||+++||..++|.|
T Consensus 270 ~~l~l~l~~~~~--------------~~~L~~lv~~~S~nPaki~gL~~~kg~I 309 (343)
T d2eg6a1 270 TALGSYATVFEE--------------MNALQHFEAFCSVNGPQFYGLPVNDTFI 309 (343)
T ss_dssp THHHHHHHHHHH--------------TTCGGGHHHHHHTHHHHHHTCCCCCSEE
T ss_pred HHHHHHHHHHHh--------------cCCHHHHHHHHhHhHHHHhCCCCCCCeE
Confidence 222222222221 2689999999999999999998777754
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.5e-05 Score=68.93 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+++.+++|+++++++.+|+-...... .+.+..... .+..+.|+..-+.+.++++.+.|..+.+
T Consensus 114 ~~f~~ql~lA~~~~~Pv~IH~r~a~~~~-------------~~~l~~~~~--~~~~i~H~f~g~~~~~~~~l~~g~~~si 178 (259)
T d1zzma1 114 WLLDEQLKLAKRYDLPVILHSRRTHDKL-------------AMHLKRHDL--PRTGVVHGFSGSLQQAERFVQLGYKIGV 178 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCHHHH-------------HHHHHHHCC--TTCEEETTCCSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHH-------------HHhhhcccc--ccceeeecccCCHHHHHHHHHcCCCccc
Confidence 4567789999999999999996643321 222222221 2245789998899999999999999988
Q ss_pred CccchhhccCCccHHHHHHc-CC-cEEEccCCCCCCC------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHA-DI-CVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 374 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~-gi-~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 374 (466)
.+..... ....++.+++. .. ++.+-||+|.... ...+..-......+.... +++.+++.
T Consensus 179 ~~~~~~~--~~~~~~~~v~~iPldriL~ETD~P~~~~~~~~~~~~~P~~~~~~~~~iA~i~-----------~~~~~ev~ 245 (259)
T d1zzma1 179 GGTITYP--RASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELR-----------REPADEIA 245 (259)
T ss_dssp CGGGGCT--TTCSHHHHHHHSCGGGEEECCCBTSSCCTTCTTSCCCGGGHHHHHHHHHHHC-----------SSCHHHHH
T ss_pred ccccccc--chHHHHHHHHhhccceEEEecCCCCcCCCcCCCCCCchHHHHHHHHHHHHHh-----------CCCHHHHH
Confidence 8654321 12234444433 21 4788999863211 011221111222122111 48999999
Q ss_pred HHHhHHHHHHcCC
Q 012333 375 RMATINGAKSVLW 387 (466)
Q Consensus 375 ~~~T~~~A~~lgl 387 (466)
+..+.|.-+++++
T Consensus 246 ~~~~~N~~rlf~l 258 (259)
T d1zzma1 246 QALLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999987
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.47 E-value=2.3e-07 Score=67.54 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=57.9
Q ss_pred ceEEEEccEEEeecCCc---ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 19 STMILHNAVIVTMDKES---RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~---~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
++.+++|++|.|+++.. ..++++.|.|++|+|++||+..+.+.... .+++++|++|+++.+..-..+-+.-
T Consensus 1 a~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~-~aa~viDl~Grlv~i~~Gk~AD~~i 74 (103)
T d2puza1 1 ATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLS-TADETTDCGGRWITLEAGKSADFAI 74 (103)
T ss_dssp CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGS-CCSEEEECTTCEEECCTTSBCCEEE
T ss_pred CcEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhh-chHhhcCCCCCEEEeeccceeeEEE
Confidence 47899999999987643 36789999999999999999877654332 2678999999999999888887763
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=6.8e-06 Score=71.12 Aligned_cols=139 Identities=13% Similarity=0.012 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+.+.+++|.++++|+.+|+-....+ ..+.+..... .....+.|+..-+.+.++.+.+.|..+.+
T Consensus 108 ~~f~~ql~lA~~~~lPviiH~r~a~~~-------------~~~il~~~~~-~~~~~v~H~f~g~~~~~~~~~~~g~~~s~ 173 (260)
T d1xwya1 108 RAFVAQLRIAADLNMPVFMHCRDAHER-------------FMTLLEPWLD-KLPGAVLHCFTGTREEMQACVAHGIYIGI 173 (260)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHGGGGG-GSSCEEECSCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCceEeeeccchhH-------------HHHHHHHhhc-cCcccchhhhhccHHHHHHhhhhcccccc
Confidence 346777899999999999999764322 2233333221 12245789999999999999999999988
Q ss_pred CccchhhccCCccHHHHHHc-CC-cEEEccCCCCCCCC-C---------CHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 012333 303 CPASAMRMLGFAPIKEMLHA-DI-CVSLGTDGAPSNNR-M---------SIVDEMYLASLINKGREVFANGTTDPAALPA 370 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~-gi-~~~~gsD~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 370 (466)
.+..... .....++++++. .. .+.+-||+|-..+. . .+..-...+..+...+ +++.
T Consensus 174 ~g~~~~~-~~~~~~~~~~~~iPldrlllETD~P~~~p~~~~~~~~~~~NeP~~l~~v~~~lA~~~-----------g~~~ 241 (260)
T d1xwya1 174 TGWVCDE-RRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWR-----------GEDA 241 (260)
T ss_dssp CGGGGCT-TTSHHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHHHHHHHHHH-----------TCCH
T ss_pred Cccccch-hhHHHHHHHHHhhhhhheeeecCCCCCCCccccccccCCCCChHHHHHHHHHHHHHh-----------CcCH
Confidence 8654322 111234444433 22 57888998732211 0 0111111111122111 4999
Q ss_pred HHHHHHHhHHHHHHcCC
Q 012333 371 ETVLRMATINGAKSVLW 387 (466)
Q Consensus 371 ~~al~~~T~~~A~~lgl 387 (466)
+++.+..+.|.-+++|+
T Consensus 242 ~ev~~~~~~N~~~~f~l 258 (260)
T d1xwya1 242 AWLAATTDANVKTLFGI 258 (260)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999999997
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=98.36 E-value=1e-07 Score=67.71 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHcCCCCcccccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 383 KSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 383 ~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
....+..+.|+|++||.|||+|||.+. +..+.|......+..||++|++|.
T Consensus 52 ~~~d~~gr~~tlevGk~ADlviwd~~~---------~~~L~Y~~G~n~i~~vi~~G~~V~ 102 (103)
T d2q09a1 52 HWQDMKGKLVTLRVGMLADFLVWNCGH---------PAELSYLIGVDQLVSRVVNGEETL 102 (103)
T ss_dssp TSEECTTCEEECCTTSBCCEEEESSSC---------TTHHHHSCSCCCEEEEEETTEECC
T ss_pred hhhhcccceEEecCCCccCEEEEcCCC---------HHHhhhhcCCCCceEEEECCEEee
Confidence 445577899999999999999999872 345667777789999999999873
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.34 E-value=3.5e-08 Score=75.43 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHHHHHcCCCCcccccccCCccCEEEEcCCCCCCC------------------CcCCcccceecccCCCCe
Q 012333 370 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV------------------PVHDRITSLVYCMRTENV 431 (466)
Q Consensus 370 ~~~al~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~------------------~~~~~~~~~~~~~~~~~v 431 (466)
..+.|+.. .-.|+.+.+++++|.++|||.|||||+|++..... ..++.+..+++..+.+.|
T Consensus 48 ~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~tp~~~~r~~~~~~~~~~~~~~~~l~e~Lf~l~~lGDDR~I 126 (140)
T d2ooda1 48 PYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGDDRCV 126 (140)
T ss_dssp EHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCCGGGE
T ss_pred CHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCCChHHHhhhhhcccccccchhhhhHHHHHHHHhhccCCCce
Confidence 44445443 44689999999999999999999999998743211 011235567778889999
Q ss_pred eEEEEccEEEEEC
Q 012333 432 VSVMCNGQWVMKN 444 (466)
Q Consensus 432 ~~v~v~G~~v~~~ 444 (466)
..|||.|+.||+.
T Consensus 127 ~~t~V~G~~v~~r 139 (140)
T d2ooda1 127 DETWVMGKRLYKK 139 (140)
T ss_dssp EEEEETTEEEEEC
T ss_pred EEEEECCEEEeec
Confidence 9999999999984
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.26 E-value=1.3e-07 Score=70.00 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=44.1
Q ss_pred hHHHHHHcCCCC--cccccccCCccCEEEEcCC-CCCCC--CcC-----CcccceecccCCCCeeEEEEccEEEEEC
Q 012333 378 TINGAKSVLWDN--DIGSLEAGKKADMVVVDPF-SWPMV--PVH-----DRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 378 T~~~A~~lgl~~--~~G~i~~G~~ADlvv~d~~-~~~~~--~~~-----~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
+.++|+.+.... ..|.|++|++|||+|||++ .|+.. .+. +|+....+ .++|..||++|++||+|
T Consensus 39 ~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~~~~Sk~~nspf~g~~l---~G~v~~T~~~G~~v~~d 112 (112)
T d1xrta1 39 LVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVL---KGKVIYTIKDGKMVYKD 112 (112)
T ss_dssp CCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTTTTCEE---EEEEEEEEETTEEEEEC
T ss_pred CcccceEEehhcccccceeecccceEEEEecCCccEEECHHHccCcCCCceecCCEE---eeEEEEEEECCEEEEeC
Confidence 447788874432 3689999999999999997 44322 111 23322212 35899999999999986
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=2.6e-07 Score=71.17 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=53.8
Q ss_pred HHHHHcCCCCcccccccCCccCEEEEcCC-CCCCC--Cc-----CCcccceecccCCCCeeEEEEccEEEEECCeeeecc
Q 012333 380 NGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMV--PV-----HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 451 (466)
Q Consensus 380 ~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~--~~-----~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~ 451 (466)
++|+.+....+++.+++|.+|||+|+|++ .|+.. .+ .+|+..+.+ ..+|..||++|++||++|++....
T Consensus 39 ~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~~~~sk~~~tpf~G~~~---~G~v~~Ti~rG~~v~~~g~~~~~~ 115 (142)
T d1kcxa1 39 GGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGMEC---HGSPLVVISQGKIVFEDGNISVSK 115 (142)
T ss_dssp SSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCEE---EEEEEEEEETTEEEEETTEECCCT
T ss_pred ccceeechhhcceeecccccceEEEEeccceEEEcchhccccCCccCCcCCEE---EEEEEEEEECCEEEEECCEEeEcC
Confidence 57889988888999999999999999997 33222 11 223332222 258999999999999999986543
Q ss_pred -HHHHH
Q 012333 452 -RGRLF 456 (466)
Q Consensus 452 -~~~~~ 456 (466)
.|+++
T Consensus 116 g~G~fl 121 (142)
T d1kcxa1 116 GMGRFI 121 (142)
T ss_dssp TCCCBC
T ss_pred CCCeEe
Confidence 45544
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=7e-05 Score=64.84 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEEC
Q 012333 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303 (466)
Q Consensus 224 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~ 303 (466)
.+.+.+++|.+++.|+.+|+-...... .+++...... ....+.|+..-+.+.++.+.+.|..+.+.
T Consensus 112 ~f~~ql~lA~~~~lPv~iH~r~a~~~~-------------~~il~~~~~~-~~~~v~H~FsG~~~~a~~~l~~g~~~s~~ 177 (265)
T d1yixa1 112 SFIHHIQIGRELNKPVIVHTRDARADT-------------LAILREEKVT-DCGGVLHCFTEDRETAGKLLDLGFYISFS 177 (265)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESCHHHH-------------HHHHHHTTGG-GTCEEETTCCSCHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHHhCCCcccchhhHHHHH-------------HHHHHhhccc-CcceEEEeecCChHHHHHHHHcCCeecCc
Confidence 467788999999999999997653321 2222222211 22458899998999999999999999888
Q ss_pred ccchhhccCCccHHHHHHc-CC-cEEEccCCCCCCC------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 012333 304 PASAMRMLGFAPIKEMLHA-DI-CVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 375 (466)
Q Consensus 304 p~~~~~~~~~~~~~~~~~~-gi-~~~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 375 (466)
+...... ...++++++. .. .+.+-||+|-..+ .-.+..-...+..+...+ +++.+++.+
T Consensus 178 g~~~~~~--~~~l~~~v~~iPldrlLlETD~P~~~p~~~~~~~n~P~~i~~~~~~iA~i~-----------~~~~~ev~~ 244 (265)
T d1yixa1 178 GIVTFRN--AEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLK-----------GVAVEELAQ 244 (265)
T ss_dssp GGGGSTT--CHHHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHHHH-----------TSCHHHHHH
T ss_pred cccccch--hHHHHHHHHhcchhceEeecCCcccCccccCCCCCCcHHHHHHHHHHHHHH-----------CcCHHHHHH
Confidence 6544321 1233444432 21 4788999873211 001111111111111111 499999999
Q ss_pred HHhHHHHHHcCCCC-ccccc
Q 012333 376 MATINGAKSVLWDN-DIGSL 394 (466)
Q Consensus 376 ~~T~~~A~~lgl~~-~~G~i 394 (466)
..+.|.-+++|++. +.++|
T Consensus 245 ~~~~Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 245 VTTDNFARLFHIDASRLQSI 264 (265)
T ss_dssp HHHHHHHHHTTCCGGGGCCC
T ss_pred HHHHHHHHHhCCCHHHhccc
Confidence 99999999999963 34443
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.19 E-value=8.6e-06 Score=71.51 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCccc
Q 012333 367 ALPAETVLRMATINGAKSVLWDNDIG 392 (466)
Q Consensus 367 ~ls~~~al~~~T~~~A~~lgl~~~~G 392 (466)
|||+++||+++|.|||++|||++ +|
T Consensus 264 Gls~~eal~~aT~n~A~~lgl~d-rG 288 (288)
T d1o12a2 264 GCSITELAKVSSYNSCVELGLDD-RG 288 (288)
T ss_dssp CCCHHHHHHHHTHHHHHHTTCTT-SS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 49999999999999999999964 56
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.19 E-value=4e-07 Score=70.77 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHcCCCCcccccccCCccCEEEEcCC-CCCCCC--c-----CCcccceecccCCCCeeEEEEccEEEEECCeeeec
Q 012333 379 INGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVP--V-----HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450 (466)
Q Consensus 379 ~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-~~~~~~--~-----~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 450 (466)
.++|+++...++++.|.+|.+|||+++|++ .|...+ + .+|+..+.+ ..+|..||++|++||++|+++..
T Consensus 39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~~~~sk~~~spfeG~~~---~G~v~~TivrG~iV~~~g~~~~~ 115 (150)
T d2ftwa1 39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKV---TGIAVTTIVAGNIVWSDNKLSCV 115 (150)
T ss_dssp CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTTTTCEE---EEEEEEEEETTEEEEETTEECCC
T ss_pred CCccEEEecccceeeeecCccCceEEEecCceEEEeccccccccccccCcCCEE---EEEEeEEEECCEEEEECCEEeec
Confidence 378999999889999999999999999997 332221 1 223332222 25799999999999999998644
Q ss_pred c-HHHHH
Q 012333 451 M-RGRLF 456 (466)
Q Consensus 451 ~-~~~~~ 456 (466)
. .|+++
T Consensus 116 ~g~Grfl 122 (150)
T d2ftwa1 116 KGSGRFV 122 (150)
T ss_dssp TTCCCBC
T ss_pred CCCceEc
Confidence 3 45544
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.6e-07 Score=68.97 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=46.1
Q ss_pred CCcccccccCCccCEEEEcCCCCC-----------CCCcCCcccceecccCCCCeeEEEEccEEEE
Q 012333 388 DNDIGSLEAGKKADMVVVDPFSWP-----------MVPVHDRITSLVYCMRTENVVSVMCNGQWVM 442 (466)
Q Consensus 388 ~~~~G~i~~G~~ADlvv~d~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 442 (466)
.++.|.+++||.||++++|.+... ..+.++.+.++++..++++|..|||+|+.|.
T Consensus 63 ~~~~g~FevGkeaD~ivID~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~gddr~I~~v~V~G~~Vv 128 (131)
T d2uz9a1 63 HHEFFMFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVV 128 (131)
T ss_dssp TTCEEECCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCCGGGEEEEEETTEEEE
T ss_pred hccccccccCccccEEEEECCCccchhhhhccccccCcHHHHHHHHhhcCCCCcEeEEEECCEEeC
Confidence 467999999999999999987421 1256677888999999999999999999884
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=98.06 E-value=2.2e-05 Score=67.79 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCChhhHHHHHhcCCeEEE
Q 012333 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (466)
Q Consensus 223 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~ 302 (466)
+.+++.+++|+++++|+.+|+-....+ ..+.+.....- ....+.|+..-+.+.++.+.+.|..+.+
T Consensus 112 ~vF~~ql~lA~~~~lPviiH~r~a~~~-------------~~~il~~~~~~-~~~~i~H~fsG~~~~~~~~l~~g~~is~ 177 (260)
T d1j6oa_ 112 RVFVEQIELAGKLNLPLVVHIRDAYSE-------------AYEILRTESLP-EKRGVIHAFSSDYEWAKKFIDLGFLLGI 177 (260)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHSCCC-SSCEEETTCCSCHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHhcCcceEEeeccchHH-------------HHHHHHhhcCC-CCCeeeeccccCHHHHHHHHhCCCceee
Confidence 457788999999999999999664322 22333333222 2246889999999999999999999988
Q ss_pred CccchhhccCCccHHHHHHc-C-CcEEEccCCCCCCC--------CCCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 012333 303 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN--------RMSIVDEMYLASLINKGREVFANGTTDPAALPAET 372 (466)
Q Consensus 303 ~p~~~~~~~~~~~~~~~~~~-g-i~~~~gsD~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 372 (466)
.+...+.. ...++.+++. + -.+.+-||+|-..+ ........ +..+...+ +++.++
T Consensus 178 ~g~~~~~~--~~~~~~~v~~iPldrlllETD~P~l~p~~~~~~~n~P~~l~~v--~~~iA~~~-----------~~~~~e 242 (260)
T d1j6oa_ 178 GGPVTYPK--NEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYV--VETISQVL-----------GVPEAK 242 (260)
T ss_dssp CGGGGCTT--CHHHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHH--HHHHHHHH-----------TSCHHH
T ss_pred ccccccch--HHHHHHHHHhcccceEEEecCCCCCCCcccCCCCCChHHHHHH--HHHHHHHh-----------CcCHHH
Confidence 86443321 1123333322 2 24778899863211 01112211 11111111 499999
Q ss_pred HHHHHhHHHHHHcC
Q 012333 373 VLRMATINGAKSVL 386 (466)
Q Consensus 373 al~~~T~~~A~~lg 386 (466)
+.+..+.|.-++++
T Consensus 243 v~~~~~~N~~rlF~ 256 (260)
T d1j6oa_ 243 VDEATTENARRIFL 256 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888775
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=97.84 E-value=9.8e-06 Score=61.09 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=39.0
Q ss_pred cccccCCccCEEEEcCC-CCCCCC--cC-----CcccceecccCCCCeeEEEEccEEEEECCeeeec
Q 012333 392 GSLEAGKKADMVVVDPF-SWPMVP--VH-----DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 450 (466)
Q Consensus 392 G~i~~G~~ADlvv~d~~-~~~~~~--~~-----~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 450 (466)
..|++|.+|||+++|++ .|+..+ +. +|+.-+. -..+|..||++|++||+++++...
T Consensus 54 P~~~vG~DAD~~l~Dp~~~~~v~~~~~~sk~~~tpf~G~~---~~G~v~~Ti~rG~~v~~~ge~~~~ 117 (126)
T d1gkra1 54 PTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGMP---VTGAPVLTMVRGTVVAEKGEVLVE 117 (126)
T ss_dssp ESCCTTSBCCEEEEESCCCEECCGGGCSSSCCCCTTTTCE---ECCEEEEEEETTEEEEETTEECSC
T ss_pred cceeecccchhheeccccceeccHHHHHhhhcccccCCcE---EEeEEEEEEECCEEEEECCEEEec
Confidence 34999999999999998 332221 11 2222211 135899999999999999998754
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.52 E-value=6e-05 Score=53.20 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=45.9
Q ss_pred ceEEEEccEEEeecCC---cceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEe
Q 012333 19 STMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~---~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~ 79 (466)
.|.+.+|+++-|+++. -..++++.|.|++|+|.+|++..+.+..+ +....|++|+++.
T Consensus 2 cd~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~~---~~~~~d~~gr~~t 62 (103)
T d2q09a1 2 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPY---PAHWQDMKGKLVT 62 (103)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--C---CTTSEECTTCEEE
T ss_pred cceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCccc---cchhhhcccceEE
Confidence 5789999999998764 35779999999999999999988765322 3467899998654
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00014 Score=45.53 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=39.8
Q ss_pred EEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeecccccccCCc
Q 012333 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (466)
Q Consensus 21 ~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~ID~H~H~~ 90 (466)
|+|.+..|+++ -... ..++|.+++|+|..|-..+.. . ..++||||+|.|.|-.
T Consensus 1 M~iE~VLIVDP--idGE-yTGdvEf~e~kI~~I~k~ect-------------p-~~ilMP~f~dg~~a~~ 53 (76)
T d1o12a1 1 MIVEKVLIVDP--IDGE-FTGDVEIEEGKIVKVEKRECI-------------P-RGVLMPRIAEGTRADL 53 (76)
T ss_dssp CEEEEEEEEET--TTEE-EEEEEEEETTEEEEEEECCSC-------------C-SSEEEECCSTTSBCCE
T ss_pred CceeeEEEEcC--CCCc-EeeeEEecCcEEEEEEEeccC-------------C-CeEEcccccCCccccE
Confidence 57888999964 1222 567999999999999875421 1 2599999999999953
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.01 E-value=0.00031 Score=49.29 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=38.1
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeec
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG 81 (466)
+|++|+|++.++ + ++ .+|.|.+|||++|+...+. ++.+++|++|..=+-|
T Consensus 2 ~d~~i~~~~~~~--g--~~---~diai~~~ki~a~~~~~~~------~a~~~~~L~~~~y~sG 51 (101)
T d2icsa1 2 YDLLIKNGQTVN--G--MP---VEIAIKEKKIAAVAATISG------SAKETIHLEPGTYVSA 51 (101)
T ss_dssp EEEEEEEEECTT--S--CE---EEEEEETTEEEEEESCCCC------CEEEEEECCTTCEEEE
T ss_pred ccEEEEcceecC--C--Ce---EEEEeccCeeeeecccccc------cchheEecCCceeeee
Confidence 699999999994 2 23 2999999999999975432 4778999998533333
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.72 E-value=0.00015 Score=50.87 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=39.3
Q ss_pred hHHHHHHcCCCCc---ccccccCCccCEEEEcCC--CCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 378 TINGAKSVLWDND---IGSLEAGKKADMVVVDPF--SWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 378 T~~~A~~lgl~~~---~G~i~~G~~ADlvv~d~~--~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
|..+++.+.|.+. .|+|++|++||+.||+-. .+.+. |.....+-.-+...+..++++|+ +|+
T Consensus 34 ~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~~~---Ds~G~~~~g~~~L~P~~tI~~G~-vyd 100 (101)
T d2icsa1 34 SGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKTLT---DSNGLTRVAKEQIRPIKTIIGGQ-IYD 100 (101)
T ss_dssp CCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEEEE---CTTSCEEEEEEEEEEEEEEETTE-EEE
T ss_pred cccchheEecCCceeeeeEecCCCeeeEEEEEEecCceEEE---eCCCCEEEeeEEEeEEEEEECCE-Eec
Confidence 3478888888653 699999999999999875 12111 11100000011246899999999 675
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=96.46 E-value=0.00052 Score=51.33 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=39.8
Q ss_pred cccCCccCEEEEcCC-CCCCC--C-----cCCcccceecccCCCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 394 LEAGKKADMVVVDPF-SWPMV--P-----VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 394 i~~G~~ADlvv~d~~-~~~~~--~-----~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
+.+|.+|||+++|++ .++.. . -.+|+..+.. ...|..||++|++||++|++.+.. .|+++
T Consensus 52 g~i~~~~~~~i~dP~~~~tIt~~~~~s~~~~tpyeG~~~---~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l 120 (127)
T d1nfga1 52 IAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHKV---KGVPKTVLLRGKVIVDEGSYVGEPTDGKFL 120 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGGGSCSSCSCCTTTTCEE---EEEEEEEEETTEEEEETTEECCCTTSCCBC
T ss_pred ecccccccceeeccccceEEehHHhccccCcCCCcCCEE---eeEEEEEEECCEEEEECCEEeecCCCCeEc
Confidence 478899999999987 22211 1 1122222211 258999999999999999987544 45554
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0015 Score=45.74 Aligned_cols=52 Identities=13% Similarity=0.353 Sum_probs=38.4
Q ss_pred EEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeeccc
Q 012333 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFV 83 (466)
Q Consensus 22 lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~I 83 (466)
.|+|+++-.-+ . +. +|.|+||+|.+|.+..+.. + ...+.+|++|.+++|-+|
T Consensus 4 ~I~NarL~gr~---G-L~--~I~I~~G~i~~I~pq~~~~---~-~~~d~lDa~GgL~~p~~i 55 (103)
T d1ra0a1 4 TIINARLPGEE---G-LW--QIHLQDGKISAIDAQSGVM---P-ITENSLDAEQGLVIPLII 55 (103)
T ss_dssp EEEEEBCTTCC---S-EE--EEEEETTEEEEEEEESSCC---C-CCTTEEECTTCEEESEEE
T ss_pred eEEEEEeCCCC---c-EE--EEEecCCEEeeeecCCccc---c-CCCcceeccCCcccCcEE
Confidence 58888887433 2 23 8999999999999765421 1 255799999999999554
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=96.07 E-value=0.0061 Score=38.04 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.3
Q ss_pred ccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEEC
Q 012333 393 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 444 (466)
Q Consensus 393 ~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 444 (466)
.+..|+.||||++|.+ .+|..|++.|.+||+.
T Consensus 44 ~f~dg~~a~~Vlld~~--------------------l~v~~tv~~g~~v~~~ 75 (76)
T d1o12a1 44 RIAEGTRADLVLLDED--------------------LNVVMTIKEGEVVFRS 75 (76)
T ss_dssp CCSTTSBCCEEEECTT--------------------CCEEEEEETTEEEEEC
T ss_pred cccCCccccEEEEcCC--------------------ceEEEEEeeccEEEec
Confidence 4789999999999998 7999999999999974
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.05 E-value=0.0032 Score=47.02 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=38.5
Q ss_pred cccCCccCEEEEcCC-CCCCC--C-----cCCcccceecccCCCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 394 LEAGKKADMVVVDPF-SWPMV--P-----VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 394 i~~G~~ADlvv~d~~-~~~~~--~-----~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
+.+|.+||++++|++ .+... . ..+|+.-+. -...|..||++|++||++++++... .|+++
T Consensus 53 ~~v~~~~~~~~~dp~~~~~i~~~~~~s~~~~tpf~G~~---~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv 121 (128)
T d1k1da1 53 IVVGSDADLVIFDPNIERVISAETHHMAVDYNAFEGMK---VTGEPVSVLCRGEFVVRDKQFVGKPGYGQYL 121 (128)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTTTCCSSSSCCTTTTCE---EEEEEEEEEETTEEEEETTEECCCTTCSCBC
T ss_pred eecccccceEEeeccccEEEeccccccccceeeecCcE---EEEEEEEEEECCEEEEECCEEEecCCCCeEe
Confidence 477999999999986 22111 1 112222211 1246899999999999999987443 45544
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=95.94 E-value=0.13 Score=42.82 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=35.7
Q ss_pred HHHHHHc-C-CcEEEccCCCCCCCC--CCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 012333 316 IKEMLHA-D-ICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 388 (466)
Q Consensus 316 ~~~~~~~-g-i~~~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 388 (466)
++.+++. | -++.+|||+|..... .+....+... .+. ++|.++.=+.+..|+++++|++
T Consensus 210 l~~~i~~~g~dRilfGSD~P~~~~~~~~~~~~~~~~~---~~~------------~l~~~~~~~il~~NA~rlfg~d 271 (271)
T d2ffia1 210 LCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQF---EAL------------GCSAQLRQALLLDTARALFGFE 271 (271)
T ss_dssp HHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHHH---HHH------------CCCHHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHhCCCcEEEeCCCCCCcccCCCCHHHHHHHH---Hhc------------CCCHHHHHHHHhHHHHHHhCcC
Confidence 4445544 3 469999999743221 2232322221 111 3888888889999999999984
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=95.84 E-value=0.16 Score=44.24 Aligned_cols=27 Identities=4% Similarity=-0.133 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 220 ATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 220 ~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
.+...+..+.+.|.++|+++.+|....
T Consensus 142 ~~d~~~~pi~~~~~e~~lpv~iH~~~~ 168 (325)
T d2dvta1 142 YDLPQYRPFWGEVEKLDVPFYLHPRNP 168 (325)
T ss_dssp TTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred ccCcccchHHHHHhhCCceEEEecCCC
Confidence 455678889999999999999998654
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=95.80 E-value=0.0013 Score=48.65 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=37.3
Q ss_pred cccCCccCEEEEcCCC-CCCCC-------cCCcccceecccCCCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 394 LEAGKKADMVVVDPFS-WPMVP-------VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 394 i~~G~~ADlvv~d~~~-~~~~~-------~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
+-|| ||+|+||++. ++..+ -.+|+..+ .-...+..|+++|++|+++|++++.. .|+++
T Consensus 50 v~~g--~d~~~~d~~~~~tis~~~~~s~~~~tpfeG~---~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l 116 (123)
T d1gkpa1 50 VFPG--ADLVVYDPQYRGTISVKTQHVNNDYNGFEGF---EIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLL 116 (123)
T ss_dssp EEEC--CCEEEEETTCCEECCGGGCCSSSSCCTTTTC---EESCEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred EecC--cceEEEecccccccchhhhhccccccccccc---EEeeEEEEEEECCEEEEECCEEEecCCCCeEe
Confidence 5677 6999999872 22111 11222222 12368999999999999999997654 44443
|
| >d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: AMP deaminase (AMPD), catalytic domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.67 E-value=0.013 Score=55.45 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=80.4
Q ss_pred cCCccceeccCCcchhHHHHhhcCCCCchHHHHhhhccCCCCeeEEEeecCC--hhhHHHHHhcCCeEEECccchhhc--
Q 012333 235 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM-- 310 (466)
Q Consensus 235 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~g~~~~~~p~~~~~~-- 310 (466)
.++.+..|+.+....... ...+ +.. ..|.||..+. +....+++..++.+.+||.++..+
T Consensus 441 ~~~~lrpH~GE~~~~~~l--------------~~al-L~a--drIgHGv~l~~~p~L~~l~~~~qI~le~cPlSN~~l~~ 503 (628)
T d2a3la1 441 TTITLRPHSGEAGDIDHL--------------AATF-LTC--HSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFL 503 (628)
T ss_dssp CCCEECCCCSSSSCTHHH--------------HHHH-HHC--SSCSCCGGGGGCHHHHHHHHHHTCCEEECHHHHTTTTC
T ss_pred CCeeeecccCCCCCHHHH--------------HHHH-hcc--ccccceeEccCCHHHHHHHHhcCceEEECCCchhhccc
Confidence 467788999886543221 1111 111 2377998875 445788888999999999999755
Q ss_pred -cCCccHHHHHHcCCcEEEccCCCCCCC-CCC-HHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 012333 311 -LGFAPIKEMLHADICVSLGTDGAPSNN-RMS-IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 387 (466)
Q Consensus 311 -~~~~~~~~~~~~gi~~~~gsD~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl 387 (466)
-...|+..+++.|++|+++||.+.... ... +.++...+.... +|+..++..++ .|....-|+
T Consensus 504 ~~~~hP~~~~~~~Gl~VsLsTDDPl~f~~t~epL~eEY~~aa~~~--------------~Ls~~dl~elA-rNSV~~S~f 568 (628)
T d2a3la1 504 DYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVW--------------KLSACDLCEIA-RNSVYQSGF 568 (628)
T ss_dssp CSTTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHH--------------TCCHHHHHHHH-HHHHHHSCC
T ss_pred ChhhCcHHHHHHCCCeEEEcCCCccccCCCcchHHHHHHHHHHHh--------------CCCHHHHHHHH-HHHHHHhCC
Confidence 234699999999999999999874221 122 445544443322 38888887655 466666665
Q ss_pred C
Q 012333 388 D 388 (466)
Q Consensus 388 ~ 388 (466)
+
T Consensus 569 ~ 569 (628)
T d2a3la1 569 S 569 (628)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=95.48 E-value=0.012 Score=43.60 Aligned_cols=61 Identities=23% Similarity=0.430 Sum_probs=40.3
Q ss_pred ccccCCccCEEEEcCCC-CCC--CC-----cCCcccceecccCCCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 393 SLEAGKKADMVVVDPFS-WPM--VP-----VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 393 ~i~~G~~ADlvv~d~~~-~~~--~~-----~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
-+.+|.+|||+++|++. ++. .. ..+|+..+.. ...+..|+++|++|+++|++.... .|+++
T Consensus 51 Pg~i~~~~~~~i~dp~~~~tI~~~~~~s~~~~tpfeG~~~---~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fi 120 (127)
T d1ynya1 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEV---YGEVVSVLSRGSFVVRDKQFVGQAGSGQYI 120 (127)
T ss_dssp ECSTTSBCCEEEEEEEEEEEECTTTCCSSSSCCTTTTEEE---EEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred cccccccchhhhhccccceEEeehhhhhccCcCCcCCCEE---eeEEEEEEECCEEEEECCEEeecCCCceEe
Confidence 46789999999999861 111 11 1223332221 247999999999999999987654 45443
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=93.81 E-value=0.049 Score=37.93 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=30.2
Q ss_pred cccccCCccCEEEEcCCCCCCCCcCCcccceecccCCCCeeEEEEccEEEEE
Q 012333 392 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 443 (466)
Q Consensus 392 G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 443 (466)
.-|++|+.||++.++.| |.++. ..+ .++..|+++|+ +|+
T Consensus 57 PGL~~g~~~d~~~~~~~-----P~~di-~~~------~~v~~v~~~G~-~~~ 95 (96)
T d2qs8a1 57 PSIESGKLADLIAVKGN-----PIEDI-SVL------ENVDVVIKDGL-LYE 95 (96)
T ss_dssp ESCCTTSBCCEEEESSC-----TTTCG-GGG------GGEEEEEETTE-EEE
T ss_pred cCccccCcccEEEEcCC-----hhHHh-Hhh------cCccEEEECCE-EeC
Confidence 44999999999999999 65553 222 57999999998 454
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=93.56 E-value=0.038 Score=41.30 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=32.1
Q ss_pred ceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcE
Q 012333 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77 (466)
Q Consensus 36 ~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~ 77 (466)
...+++-++|+||+|+++|+..++...+| +.+++|.++++
T Consensus 29 ~~~~DG~llie~G~I~a~G~~~~l~~~~p--ga~v~d~~d~l 68 (140)
T d2ooda1 29 RFHQDGLMVVTDGVIKAFGPYEKIAAAHP--GVEITHIKDRI 68 (140)
T ss_dssp EEEEEEEEEEESSBEEEEEEHHHHHHHST--TCEEEEEEEEE
T ss_pred EEecCcEEEEeCCEEEEecCHHHHhhcCC--CceEEecCCce
Confidence 34578899999999999999887776654 67888887764
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=91.89 E-value=0.22 Score=34.02 Aligned_cols=62 Identities=11% Similarity=0.322 Sum_probs=46.9
Q ss_pred ceEEEEccEEEeecCCcceeeceEEEEECCEEEEEcCCchhhhhhccCCCeEEeCCCcEEeeccc---ccccCC
Q 012333 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFV---NTHVHT 89 (466)
Q Consensus 19 ~~~lI~n~~i~~~d~~~~~~~~~~v~I~~G~I~~Ig~~~~~~~~~~~~~~~~iD~~G~~v~PG~I---D~H~H~ 89 (466)
.|++|+--.+++... +. +...++.|++|+|.+|+.... .+++++..++++++|++- ++|.++
T Consensus 2 ~d~~~~pk~yL~~~~-g~-li~a~l~v~~G~i~ai~~~t~-------~~A~il~l~d~illG~I~~Gk~ADlvl 66 (95)
T d3be7a1 2 EDFLIKSKGYLDIQT-GE-IIKADLLIRNGKIAEIGKINT-------KDATVISIPDLILIPQIKEGFDADIVG 66 (95)
T ss_dssp CCEEEEEEEEECTTT-CC-EECCEEEEETTEEEEEECCCC-------SSSEEEEEEEEEEEESCCTTSBCCEEE
T ss_pred CceEecCcceecccc-ch-hhhhhhhhhcCcHHHHHhhcc-------ChHHhcCCCCccccceeccCceeeEEE
Confidence 367888777875332 33 456799999999999997432 477899999998888886 777776
|
| >d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: PHP domain-like family: RNase P subunit p30 domain: Ribonuclease P protein component 3, Rnp3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.46 E-value=0.54 Score=37.34 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=58.3
Q ss_pred CChhhHHHHHhcCCeEEECccchhhc------cCC----ccHHHHHHcCCcEEEccCCCCCCCCCCHHHHHHHHHHHhcc
Q 012333 285 VNHTEIGLLSRAGVKVSHCPASAMRM------LGF----APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 354 (466)
Q Consensus 285 ~~~~~~~~~~~~g~~~~~~p~~~~~~------~~~----~~~~~~~~~gi~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~ 354 (466)
++...++.+++.|+.+.++-....+. ... ..++.....|+++.++||......-.++.+.+..+...
T Consensus 106 ~~hvlak~A~e~gV~lEI~~s~ll~~~~~~R~~~i~~~~~~l~l~kky~~piVisSdAh~~~dlr~p~dv~~L~~~~--- 182 (202)
T d1v77a_ 106 IDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVI--- 182 (202)
T ss_dssp CCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHT---
T ss_pred ccHHHHHHHHHCCeEEEEEchhhhccCcccHHHHHHHHHHHHHHHHhcCCcEEEecCCCChhhcCCHHHHHHHHHHc---
Confidence 45667889999999998885544322 111 12333456799999999986543333455554444332
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 012333 355 REVFANGTTDPAALPAETVLRMATINGAKSV 385 (466)
Q Consensus 355 ~~~~~~~~~~~~~ls~~~al~~~T~~~A~~l 385 (466)
||+.+++..++|.+|.+++
T Consensus 183 ------------Gl~~~~ak~als~~P~~il 201 (202)
T d1v77a_ 183 ------------GMEIPQAKASISMYPEIIL 201 (202)
T ss_dssp ------------TCCHHHHHHTTTHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHHHh
Confidence 5999999999999999876
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=83.25 E-value=2 Score=36.90 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=24.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCccceeccCC
Q 012333 218 MNATDRLLLETRDMAREFKTGIHMHVAEI 246 (466)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 246 (466)
...+...+..+.+.|.++++++.+|....
T Consensus 151 ~~~~d~~~~p~~~~~~e~~~pv~iH~~~~ 179 (331)
T d2hbva1 151 KDLDDATLEAFLTHCANEDIPILVHPWDM 179 (331)
T ss_dssp BCTTSHHHHHHHHHHHHTTCCEEEECCSC
T ss_pred cccccchhhHHHHHHhccCCceEEecCCC
Confidence 45566788999999999999999998643
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=82.93 E-value=1.5 Score=33.02 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=37.7
Q ss_pred ccC-CccCEEEEcCCCCCCC-----------CcCCcc--cceecccCCCCeeEEEEccEEEEECCeeeecc-HHHHH
Q 012333 395 EAG-KKADMVVVDPFSWPMV-----------PVHDRI--TSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 456 (466)
Q Consensus 395 ~~G-~~ADlvv~d~~~~~~~-----------~~~~~~--~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 456 (466)
-+| -+||+.++++...... ...... ..+........+..|+++|++|+++|++.+.. .|+++
T Consensus 57 ~pg~~d~Hih~~~~~~~~~~~~~~~~tIs~~~~~~~~~~t~~eg~~~~G~~~~ti~rG~~v~~~g~~~~~~g~G~fi 133 (156)
T d2fvka1 57 LPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 133 (156)
T ss_dssp CTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGCSSSSCCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBC
T ss_pred cccccccceEEEeeccccccccccceEEehhhcccccccccceeEEEccceEEEEECCEEEEECCEEEecCCCCccc
Confidence 467 7999999998721110 000000 00111112358999999999999999987554 55554
|