Citrus Sinensis ID: 012353
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | 2.2.26 [Sep-21-2011] | |||||||
| P54873 | 461 | Hydroxymethylglutaryl-CoA | yes | no | 0.987 | 0.995 | 0.815 | 0.0 | |
| P54872 | 482 | Hydroxymethylglutaryl-CoA | yes | no | 0.941 | 0.908 | 0.504 | 1e-131 | |
| P54961 | 453 | Hydroxymethylglutaryl-CoA | N/A | no | 0.952 | 0.977 | 0.515 | 1e-130 | |
| Q5R7Z9 | 520 | Hydroxymethylglutaryl-CoA | yes | no | 0.963 | 0.861 | 0.506 | 1e-130 | |
| Q01581 | 520 | Hydroxymethylglutaryl-CoA | yes | no | 0.963 | 0.861 | 0.506 | 1e-129 | |
| P54868 | 508 | Hydroxymethylglutaryl-CoA | no | no | 0.961 | 0.879 | 0.498 | 1e-128 | |
| P54869 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.963 | 0.881 | 0.504 | 1e-128 | |
| P22791 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.961 | 0.879 | 0.503 | 1e-128 | |
| Q8JZK9 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.961 | 0.859 | 0.503 | 1e-127 | |
| P17425 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.963 | 0.861 | 0.5 | 1e-127 |
| >sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/467 (81%), Positives = 426/467 (91%), Gaps = 8/467 (1%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS A
Sbjct: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+L EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGG
Sbjct: 61 VTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESK
Sbjct: 121 TAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
LR SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EK+EGK+FS+++
Sbjct: 181 LRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSIND 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
ADY VFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+L+ DESYQSRDLEK
Sbjct: 241 ADYIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKP YDAKVQP+TLIPK+VGNMYTASLYAA ASLIH KH++L GKRVV+FSYGSG
Sbjct: 301 VSQQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
TATMFSL+L++ PFS+SNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAKDFV
Sbjct: 361 STATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFV 420
Query: 421 TSKDS--SLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
T+K+ LLAPGTYYL EVDS+YRRFY KK E+GS+ANGH
Sbjct: 421 TTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKG------EDGSVANGH 461
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Devoided of acetoacetyl-CoA thiolase (AACT) activity. Required for the development of both tapetosomes and elaioplasts in tapetal cells and for pollen viability during pollen tube elongation. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1EC: 0 |
| >sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/446 (50%), Positives = 304/446 (68%), Gaps = 8/446 (1%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
+N+GI +++YFP T V QE LE DG S+GKYT+GLGQ MAFC + ED+ S+SL AV
Sbjct: 5 ENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAVN 64
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K GNT I+G+D+ NACYGGT+
Sbjct: 65 NLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTS 124
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
AL N + W+ESS WDGR +VV D AVY +GPARPTGGA V ML+GP+AP+ FES LR
Sbjct: 125 ALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGLR 184
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
G HM + YDFYKP++ SEYP VDGKLS +CY A+D CY +EK GK FSL D
Sbjct: 185 GVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQVD 244
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
+ +FHSPYNKLVQKSF R+L+NDF+ N + A+ E + + +++Y LEK
Sbjct: 245 FALFHSPYNKLVQKSFGRMLYNDFLNNPNDSRYASLE---AYKNVKPEDTYFDSVLEKAL 301
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLT 362
+ K Y KV P+TL+ KQ+GN Y S Y+ L SL+ K ++L GKRV+ FSYGSGL
Sbjct: 302 SAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLA 361
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTS 422
A+ FS K+ + +++I+ +++ +L R PE F E + L E R+ K++V S
Sbjct: 362 ASAFSFKVEK-----PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPS 416
Query: 423 KDSSLLAPGTYYLTEVDSMYRRFYAK 448
+++ + PG++YL+ VD+ R Y +
Sbjct: 417 DETTNMFPGSFYLSSVDNAGIRKYDR 442
|
Condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54961|HMCS1_BLAGE Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/454 (51%), Positives = 311/454 (68%), Gaps = 11/454 (2%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+VGI+A+++ FP V Q LE +D S GKYT+GLGQ M FC++ ED+ S+ LT V+
Sbjct: 5 DVGIVALELIFPSQYVDQVDLEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVVSR 64
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
L+E++ I QIGRLEVG+ET++DKSKS+KT LMQ+F+ NTDIEGVD+ NACYGGT+A
Sbjct: 65 LMERWSIPYSQIGRLEVGTETLLDKSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGTSA 122
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRG 183
LFN ++WVESSSWDGRY LVV D AVYA+G ARPTGGA AV MLVG +AP+ F+ +R
Sbjct: 123 LFNAISWVESSSWDGRYALVVAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDRGVRS 182
Query: 184 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY 243
SHM HAYDFYKP+L+S YP VDGKLS CYL ALD CY+ CSK +K G++F + D
Sbjct: 183 SHMQHAYDFYKPDLSSLYPTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIERLDA 242
Query: 244 FVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSG---DESYQSRDLEK 300
+FH+PY KLVQKS ARL+ NDF+R + +E K L G +++Y R++EK
Sbjct: 243 VLFHAPYCKLVQKSLARLVLNDFVRAS---EEERTTKYSSLEALKGVKLEDTYFDREVEK 299
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHS-ELDGKRVVLFSYGS 359
+K +++ K +PS L+ QVGNMYT SLY L SL+ +K + EL GKRV LFSYGS
Sbjct: 300 AVMTYSKNMFEEKTKPSLLLANQVGNMYTPSLYGGLVSLLVSKSAQELAGKRVALFSYGS 359
Query: 360 GLTATMFSLKL-SEGHHPFSLSNILSVM-NVAGKLKSRHEFPPENFVEVMKLMEHRYGAK 417
GL ++MFSL++ S+ SL ++S + ++ +L RH+ PE F + M+ EH +
Sbjct: 360 GLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREHNHHKA 419
Query: 418 DFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 451
+ +L PGT+YL VDS+YRR Y + P
Sbjct: 420 PYTPEGSIDVLFPGTWYLESVDSLYRRSYKQVPG 453
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Blattella germanica (taxid: 6973) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q5R7Z9|HMCS1_PONAB Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/456 (50%), Positives = 311/456 (68%), Gaps = 8/456 (1%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG + GKYTIGLGQ M FC++ ED+ S+ +T V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 NLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LR
Sbjct: 135 AVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFS 237
G+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIRAQWQKEGNDKDFT 254
Query: 238 LSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRD 297
L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD
Sbjct: 255 LNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRD 314
Query: 298 LEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN-KHSELDGKRVVLFS 356
+EK + + L+ K + S L+ Q GNMYT+S+Y +LAS++ +L GKR+ +FS
Sbjct: 315 VEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFS 374
Query: 357 YGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRY 414
YGSGL AT++SLK+++ P S + + S+ ++ +L SR P+ F E MKL E +
Sbjct: 375 YGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTH 434
Query: 415 GAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+++ L GT+YL VD +RR YA++P
Sbjct: 435 HLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/456 (50%), Positives = 310/456 (67%), Gaps = 8/456 (1%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 NLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LR
Sbjct: 135 AVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFS 237
G+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFT 254
Query: 238 LSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRD 297
L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD
Sbjct: 255 LNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRD 314
Query: 298 LEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN-KHSELDGKRVVLFS 356
+EK + + L+ K + S L+ Q GNMYT+S+Y +LAS++ +L GKR+ +FS
Sbjct: 315 VEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFS 374
Query: 357 YGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRY 414
YGSGL AT++SLK+++ P S + + S+ ++ +L SR P+ F E MKL E +
Sbjct: 375 YGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTH 434
Query: 415 GAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+++ L GT+YL VD +RR YA++P
Sbjct: 435 HLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/457 (49%), Positives = 305/457 (66%), Gaps = 10/457 (2%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGILA+++YFP V Q LE ++ GKYT+GLGQ M FCS ED+ S+ LT V
Sbjct: 52 KDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQ 111
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA
Sbjct: 112 RLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTA 171
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+LFN NW+ESSSWDGRY +VVC D AVY G ARPTGGA AV ML+GP AP+A E LR
Sbjct: 172 SLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGLR 231
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ------F 236
G+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY K + + KQ F
Sbjct: 232 GTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQN-QWKQAGSDRPF 290
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L + Y +FH+P+ K+VQKS ARL+FNDF+ +S + + L F L +++Y ++
Sbjct: 291 TLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNK 350
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLI-HNKHSELDGKRVVLF 355
DL+K + ++ ++D K + S + GNMYT+SLY LASL+ H+ EL G R+ F
Sbjct: 351 DLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAF 410
Query: 356 SYGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL A+ FS ++S+ P S + L S ++ +L SR PE F E+M E
Sbjct: 411 SYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQF 470
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
Y +F D++ L PGT+YL VD +RR YA++P
Sbjct: 471 YHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 507
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54869|HMCS2_MOUSE Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/456 (50%), Positives = 307/456 (67%), Gaps = 8/456 (1%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGILA+++YFP V Q LE + GKYT+GLGQ M FCS ED+ S+ LT V
Sbjct: 52 KDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQ 111
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA
Sbjct: 112 RLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTA 171
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+LFN NW+ESS WDGRY LVVC D AVY G ARPTGGA AV ML+GP AP+ E LR
Sbjct: 172 SLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLEQGLR 231
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEGKQ-FS 237
G+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY K + +++++ Q F+
Sbjct: 232 GTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNNQPFT 291
Query: 238 LSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRD 297
L + Y +FH+P+ K+VQKS ARL+FNDF+ ++S + L F L +E+Y ++D
Sbjct: 292 LDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETYTNKD 351
Query: 298 LEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLI-HNKHSELDGKRVVLFS 356
++K + + +++ K + S + GNMYT+SLY LASL+ H+ EL G R+ FS
Sbjct: 352 VDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFS 411
Query: 357 YGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHRY 414
YGSGL A+ FS ++S+ P S L ++ SV ++ +L SR PE F E+M E Y
Sbjct: 412 YGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFY 471
Query: 415 GAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+F D+S L PGT+YL VD M+RR YA+ P
Sbjct: 472 HKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARCP 507
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P22791|HMCS2_RAT Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/457 (50%), Positives = 302/457 (66%), Gaps = 10/457 (2%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGILA+++YFP V Q LE + GKYT+GLGQ M FCS ED+ S+ LT V
Sbjct: 52 KDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQ 111
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA
Sbjct: 112 RLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTA 171
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+LFN NW+ESS WDGRY LVVC D AVY G RPTGGA AV ML+GP AP+ E LR
Sbjct: 172 SLFNAANWMESSYWDGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLEQGLR 231
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ------F 236
G+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY K + + KQ F
Sbjct: 232 GTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQN-QWKQAGNNQPF 290
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L + Y +FH+P+ K+VQKS ARL+FNDF+ ++S + L F L +E+Y ++
Sbjct: 291 TLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETYTNK 350
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLI-HNKHSELDGKRVVLF 355
D++K + + +++ K + S + GNMYT+SLY LASL+ H+ EL G R+ F
Sbjct: 351 DVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAF 410
Query: 356 SYGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL A+ FS ++S+ P S L SV ++ +L SR PE F E+M E
Sbjct: 411 SYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQF 470
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
Y +F D+S L PGT+YL VD M+RR YA++P
Sbjct: 471 YHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARRP 507
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/457 (50%), Positives = 314/457 (68%), Gaps = 10/457 (2%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E++ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 KLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNWVESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+AP+ F+ LR
Sbjct: 135 AVFNAVNWVESSSWDGRYALVVAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDRGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEG--KQF 236
G+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY K + ++++K EG K F
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGKDKDF 253
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+ NDF+ + + + L F + +++Y R
Sbjct: 254 TLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 313
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT+S+Y +LAS++ +L GKRV +F
Sbjct: 314 DVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRVGVF 373
Query: 356 SYGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S + + S+ ++ +L SR P+ F E MKL E
Sbjct: 374 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDT 433
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+ +++ L GT+YL VD +RR YA++P
Sbjct: 434 HHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRP 470
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P17425|HMCS1_RAT Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/458 (50%), Positives = 314/458 (68%), Gaps = 10/458 (2%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E+ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 KLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+APV F+ LR
Sbjct: 135 AVFNAVNWIESSSWDGRYALVVAGDIAIYASGNARPTGGVGAVALLIGPNAPVIFDRGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEG--KQF 236
G+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY K + ++++K EG K F
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGKDKDF 253
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+ NDF+ + + + L F + +++Y R
Sbjct: 254 TLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 313
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT+S+Y +LAS++ +L GKR+ +F
Sbjct: 314 DVEKAFMKASAELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 373
Query: 356 SYGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S + + S+ ++ +L SR P+ F E MKL E
Sbjct: 374 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDT 433
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 451
+ +++ L GT+YL VD +RR YA++P+
Sbjct: 434 HHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRPS 471
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| 164604966 | 464 | hydroxymethylglutaryl-CoA synthase [Heve | 0.997 | 1.0 | 0.883 | 0.0 | |
| 42795470 | 464 | HMG-CoA synthase 2 [Hevea brasiliensis] | 0.997 | 1.0 | 0.881 | 0.0 | |
| 255537251 | 464 | hydroxymethylglutaryl-CoA synthase, puta | 0.997 | 1.0 | 0.877 | 0.0 | |
| 225426749 | 464 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.997 | 1.0 | 0.879 | 0.0 | |
| 16417956 | 464 | hydroxymethylglutaryl coenzyme A synthas | 0.997 | 1.0 | 0.879 | 0.0 | |
| 14916100 | 464 | hydroxymethylglutaryl coenzyme A synthas | 0.997 | 1.0 | 0.875 | 0.0 | |
| 164604964 | 465 | hydroxymethylglutaryl-CoA synthase [Heve | 0.997 | 0.997 | 0.877 | 0.0 | |
| 343466153 | 465 | hydroxymethylglutaryl-CoA synthase [Sira | 1.0 | 1.0 | 0.868 | 0.0 | |
| 378587536 | 467 | 3-hydroxy-3-methylglutaryl-CoA synthase | 0.993 | 0.989 | 0.861 | 0.0 | |
| 356563228 | 460 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.989 | 1.0 | 0.862 | 0.0 |
| >gi|164604966|dbj|BAF98279.1| hydroxymethylglutaryl-CoA synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/465 (88%), Positives = 441/465 (94%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILAMDIYFPPT VQQEALEAHDGASKGKYTIGLGQ+CM FC+EVEDVISMSLTA
Sbjct: 1 MAKNVGILAMDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMPFCTEVEDVISMSLTA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LL+KY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG
Sbjct: 61 VTSLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ ML+GP+AP+AFESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPEAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK C+KYEKLEGKQFS+S+
Sbjct: 181 FRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKLEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFARL+FNDF+RNASS+D+AAKEKL PFSTLSGDESYQ+RDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFARLVFNDFVRNASSIDDAAKEKLAPFSTLSGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKVQP+TLIPKQVGNMYTASLYAA ASL+HNKH+EL GKRV+LFSYGSG
Sbjct: 301 VSQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHTELAGKRVILFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI +VMNVAGKLK+RHEFPPE F +MKLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIATVMNVAGKLKTRHEFPPEKFAVIMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD S+LAPGTYYLTEVD+MYRRFYA+K T ENG LANGH
Sbjct: 421 TSKDCSILAPGTYYLTEVDTMYRRFYAQKAVGDT-VENGLLANGH 464
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42795470|gb|AAS46245.1| HMG-CoA synthase 2 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/465 (88%), Positives = 440/465 (94%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILAMDIYFPPT VQQEALEAHDGASKGKYTIGLGQ+CMAFC+EVEDVISMSLTA
Sbjct: 1 MAKNVGILAMDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS NACYGG
Sbjct: 61 VTSLLEKYNIDPNQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSANACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ ML+GP+AP+AFESK
Sbjct: 121 TAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPEAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK C+KYEKLEGKQFS+S+
Sbjct: 181 FRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKLEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFARL+FNDF+RNASS+D+AAKEKL PFSTLSGDESYQ+RDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFARLVFNDFVRNASSIDDAAKEKLAPFSTLSGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKVQP+TLIPKQVGNMYTASLYAA ASL+HNKH+EL GKRV+LFSYGSG
Sbjct: 301 VSQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHTELAGKRVILFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI +VMNVAGKLK+RHEFPPE F +MKLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIATVMNVAGKLKTRHEFPPEKFAVIMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD S+LAPGTYYLTEVD+MYRRFYA+K T ENG LANGH
Sbjct: 421 TSKDCSILAPGTYYLTEVDTMYRRFYAQKAVGDT-VENGLLANGH 464
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537251|ref|XP_002509692.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] gi|223549591|gb|EEF51079.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/465 (87%), Positives = 439/465 (94%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILA+DIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+CM FC+EVEDVISMSLTA
Sbjct: 1 MAKNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMGFCTEVEDVISMSLTA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LL+ Y IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK GNTDIEGVDS+NACYGG
Sbjct: 61 VTSLLDNYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSSNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ ML+GPDAP+AFESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK C+KYEK EGKQFS+S+
Sbjct: 181 YRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFARL+FNDF+RNASS+DEAAKEKL PFSTL+GDESYQ+RDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFARLVFNDFVRNASSIDEAAKEKLAPFSTLTGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKVQP+TLIPKQVGNMYTASLYAA ASL+HNK+S+L GKRV+LFSYGSG
Sbjct: 301 VSQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKNSKLAGKRVILFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI +VMNV KLKSRHEF PE FVE MKLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIATVMNVTDKLKSRHEFSPEKFVETMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TS+D SLLAPGTYYLTEVD+MYRRFYAKK D T CENG +A+GH
Sbjct: 421 TSQDCSLLAPGTYYLTEVDTMYRRFYAKKLVDNT-CENGLIADGH 464
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426749|ref|XP_002282434.1| PREDICTED: hydroxymethylglutaryl-CoA synthase [Vitis vinifera] gi|297742614|emb|CBI34763.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/465 (87%), Positives = 438/465 (94%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
M KNVGILAMDIYFPPTCVQQEALE HDGASKGKYTIGLGQ+CMAFCSEVEDVISMSLT
Sbjct: 1 MTKNVGILAMDIYFPPTCVQQEALEVHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTV 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LLEKY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE+ GN DIEGVDS+NACYGG
Sbjct: 61 VTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ MLVGPDAP+AFESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LCSKYEKLEGKQFS+++
Sbjct: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKLLCSKYEKLEGKQFSIAD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
ADYFVFHSPYNKLVQKSFARL+FND +RNASSVDEA K+KL PFS+LSGDESYQ+RDLEK
Sbjct: 241 ADYFVFHSPYNKLVQKSFARLVFNDVVRNASSVDEAGKQKLEPFSSLSGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
SQQ+AKPLYDAKVQPSTL+PKQVGNMYTASLYAA S++HNKHSEL GKRVV+FSYGSG
Sbjct: 301 ASQQVAKPLYDAKVQPSTLLPKQVGNMYTASLYAAFVSVLHNKHSELSGKRVVMFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFS +L +G HPFSLSNI +VM+VAGKLK+RHEFPPE FVE++KLMEHRYGAKDFV
Sbjct: 361 LTATMFSFQLRDGQHPFSLSNIATVMDVAGKLKARHEFPPEKFVEILKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD SLL PGT+YLTEVDSMYRRFY+KK T CENGSLANGH
Sbjct: 421 TSKDCSLLPPGTHYLTEVDSMYRRFYSKKAGSCT-CENGSLANGH 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16417956|gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/465 (87%), Positives = 438/465 (94%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILA+DIYFPPT VQQEALEAHDGASKGKYTIGLGQ+CMAFC+EVEDVISMSLTA
Sbjct: 1 MAKNVGILAVDIYFPPTFVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LL+KY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG
Sbjct: 61 VTSLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ +LVGPDAP+AFESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAILVGPDAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK C+KYEK EGKQFS+S+
Sbjct: 181 FRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFARL+FNDF+RNASS+DE AKEKL PFS LSGDESYQ+RDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFARLVFNDFVRNASSIDETAKEKLAPFSNLSGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKV+P+TLIPKQVGNMYTASLYAA ASL+H+KH+EL GKRV LFSYGSG
Sbjct: 301 VSQQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAGKRVTLFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI SVMNVAGKLK+RHE PPE FV++MKLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVDIMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD SLLA GTYYLTEVDS+YRRFYA+K T ENG LANGH
Sbjct: 421 TSKDCSLLASGTYYLTEVDSLYRRFYAQKAVGNT-VENGLLANGH 464
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14916100|gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/465 (87%), Positives = 435/465 (93%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILA+DIYFPPT VQQEALEAHDGASKGKYTIGLGQ+CMAFC+EVEDVISMSLTA
Sbjct: 1 MAKNVGILAVDIYFPPTFVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LL+KY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG
Sbjct: 61 VTSLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ +LVGPDAP+AFESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAILVGPDAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK C+KYEK EGKQFS+S+
Sbjct: 181 FRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFARL+FNDF+RNA S+DE AKEKL PFS LSGDESYQ+RDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFARLVFNDFVRNARSIDETAKEKLAPFSNLSGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKV+P+TLIPKQVGNMYTASLYAA ASL+H+KH+EL GKRV LFSYGSG
Sbjct: 301 VSQQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAGKRVTLFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI SVMNVAGKLK+RHE PPE FV +MKLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVNIMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
SKD SLLA GTYYLTEVDS+YRRFYA+K T ENG LANGH
Sbjct: 421 RSKDCSLLASGTYYLTEVDSLYRRFYAQKAVGNT-VENGLLANGH 464
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164604964|dbj|BAF98278.1| hydroxymethylglutaryl-CoA synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/465 (87%), Positives = 437/465 (93%), Gaps = 1/465 (0%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILA+DIYFPPT VQQEALEAHDGASKGKYTIGLGQ+CMAFC+EVEDVISMSLTA
Sbjct: 1 MAKNVGILAVDIYFPPTFVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LL+KY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG
Sbjct: 61 VTSLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ +LVGPDAP+AFESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAILVGPDAPIAFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK C+KYEK EGKQFS+S+
Sbjct: 181 FRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFA L+FNDF+RNASS+DE AKEKL PFS LSGDESYQ+RDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFACLVFNDFVRNASSIDETAKEKLAPFSNLSGDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKV+P+TLIPKQVGNMYTASLYAA ASL+H+KH+EL GKRV LFSYGSG
Sbjct: 301 VSQQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAGKRVTLFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI SVMNVAGKLK+RHE PPE FV++MKLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVDIMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD SLLA GTYYLTEVDS+YRRFYA+K T ENG LANGH
Sbjct: 421 TSKDCSLLASGTYYLTEVDSLYRRFYAQKAVGNT-VENGLLANGH 464
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|343466153|gb|AEM42970.1| hydroxymethylglutaryl-CoA synthase [Siraitia grosvenorii] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/465 (86%), Positives = 430/465 (92%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILA+DIYFPPT VQQEALEAHDGASKGKYTIGLGQ+CMAFC+EVEDVISMSLT
Sbjct: 1 MAKNVGILAVDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTV 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+LLEKY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK GNTDIEGVDSTNACYGG
Sbjct: 61 VTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAAL NCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ ML+GPDAP+AFES+
Sbjct: 121 TAALLNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESR 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
+RGSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC KYEKLEGKQFS+S+
Sbjct: 181 VRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKQLCHKYEKLEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
ADYFVFHSPYNKLVQKSFARLLFNDF RNASS+DE AKEKL PFSTLSGDESYQSRDLEK
Sbjct: 241 ADYFVFHSPYNKLVQKSFARLLFNDFKRNASSIDEVAKEKLAPFSTLSGDESYQSRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
+SQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAA SL+HNKH+ L G RV+LFSYGSG
Sbjct: 301 ISQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAAFISLLHNKHNTLSGNRVILFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
TATMFSLKL+EG HPFSLSNI +++NV KLKSRHE PE F+E+MKLMEHRYGAKDFV
Sbjct: 361 STATMFSLKLNEGQHPFSLSNIAAILNVDKKLKSRHELVPEKFIEIMKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD SLL+PGTYYLTEVDS+YRRFYAK ENG +ANGH
Sbjct: 421 TSKDCSLLSPGTYYLTEVDSLYRRFYAKNDGKSARFENGVVANGH 465
|
Source: Siraitia grosvenorii Species: Siraitia grosvenorii Genus: Siraitia Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|378587536|gb|AFC34137.1| 3-hydroxy-3-methylglutaryl-CoA synthase [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/463 (86%), Positives = 432/463 (93%), Gaps = 1/463 (0%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
KNVGILA++IYFPPTCVQQEALEAHDG SKGKYTIGLGQ+C+AFC+EVEDVISMSLTAVT
Sbjct: 6 KNVGILAVEIYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCLAFCTEVEDVISMSLTAVT 65
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
+LLEKY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE+ GNTDIEGVDSTNACYGGTA
Sbjct: 66 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEETGNTDIEGVDSTNACYGGTA 125
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
AL NCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA+ ML+GPDAP+AFESK+R
Sbjct: 126 ALLNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKIR 185
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
GSHMSH YDFY+PNLASEYPVVDGKLSQTCYLMA+D+CY LC+KYEK EGKQFS+++AD
Sbjct: 186 GSHMSHVYDFYRPNLASEYPVVDGKLSQTCYLMAVDSCYNRLCNKYEKFEGKQFSVNDAD 245
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
YFVFHSPYNKLVQKSFARLLFNDF+RNASS++EAAKEKL PFSTL+GDESYQSRDLEK +
Sbjct: 246 YFVFHSPYNKLVQKSFARLLFNDFLRNASSINEAAKEKLAPFSTLTGDESYQSRDLEKAT 305
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLT 362
QQ+AK LYDAKVQP+TL+PKQVGNMYTASLYAA ASLIH KHS L G+R+V+FSYGSGLT
Sbjct: 306 QQVAKALYDAKVQPTTLVPKQVGNMYTASLYAAFASLIHKKHSSLVGQRIVMFSYGSGLT 365
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTS 422
ATMFS ++ E HPFSLSNI +VMNV KLKSRHEFPPE FVE MK+MEHRYGAKDFVTS
Sbjct: 366 ATMFSFRVRECQHPFSLSNIAAVMNVDKKLKSRHEFPPEKFVETMKVMEHRYGAKDFVTS 425
Query: 423 KDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
KD SLLAPGTYYLTEVDSMYRRFYAKK A T CENGSL NGH
Sbjct: 426 KDCSLLAPGTYYLTEVDSMYRRFYAKK-ASTTACENGSLTNGH 467
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563228|ref|XP_003549866.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/465 (86%), Positives = 433/465 (93%), Gaps = 5/465 (1%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILA+DIYFPPTC+QQE LEAHDGASKGKYTIGLGQ+CMAFC+EVEDVISMSLT
Sbjct: 1 MAKNVGILAIDIYFPPTCIQQELLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTV 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
V++LLEKY IDPKQIGRLEVGSETVIDKSKSIKTF+MQIFEK+GNTDIEGVDSTNACYGG
Sbjct: 61 VSSLLEKYAIDPKQIGRLEVGSETVIDKSKSIKTFIMQIFEKYGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAV ML+GPDAP++FESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPISFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
LRGSHM+HAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CY L KYEK EGKQFS+S+
Sbjct: 181 LRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKQEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
A+YFVFHSPYNKLVQKSFARL+FNDF++NAS VDEAAKEKL PF+TLSGDESYQSRDLEK
Sbjct: 241 AEYFVFHSPYNKLVQKSFARLVFNDFLKNASFVDEAAKEKLEPFATLSGDESYQSRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
SQQ+AKP YDAKVQP+TLIPKQVGNMYTASLYAA SLIHNKHS LDGKRV+LFSYGSG
Sbjct: 301 ASQQVAKPQYDAKVQPTTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LT+TMFSL L EG HPFSLSNI +M+VAGKLKSRHEFPPE FVE MKLMEHRYG K+FV
Sbjct: 361 LTSTMFSLLLREGQHPFSLSNIDKMMDVAGKLKSRHEFPPEKFVETMKLMEHRYGGKEFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
TSKD+SLL+PGT+YLTEVDSMYRRFYAKK + ENG + NGH
Sbjct: 421 TSKDTSLLSPGTFYLTEVDSMYRRFYAKKTS-----ENGLVTNGH 460
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| TAIR|locus:2137015 | 461 | HMGS "HYDROXYMETHYLGLUTARYL-CO | 0.987 | 0.995 | 0.796 | 1.6e-205 | |
| DICTYBASE|DDB_G0288461 | 482 | hgsA "hydroxymethylglutaryl-Co | 0.937 | 0.904 | 0.497 | 4.4e-116 | |
| UNIPROTKB|Q01581 | 520 | HMGCS1 "Hydroxymethylglutaryl- | 0.963 | 0.861 | 0.5 | 1.9e-115 | |
| UNIPROTKB|F6RJG0 | 565 | HMGCS1 "Uncharacterized protei | 0.963 | 0.792 | 0.497 | 2.4e-115 | |
| ZFIN|ZDB-GENE-040426-1042 | 519 | hmgcs1 "3-hydroxy-3-methylglut | 0.961 | 0.861 | 0.508 | 6.4e-115 | |
| UNIPROTKB|F1SMG8 | 548 | HMGCS1 "Uncharacterized protei | 0.963 | 0.817 | 0.493 | 8.2e-115 | |
| UNIPROTKB|E2QX73 | 520 | HMGCS1 "Uncharacterized protei | 0.963 | 0.861 | 0.495 | 1.3e-114 | |
| FB|FBgn0010611 | 465 | Hmgs "HMG Coenzyme A synthase" | 0.963 | 0.963 | 0.511 | 3.5e-114 | |
| MGI|MGI:107592 | 520 | Hmgcs1 "3-hydroxy-3-methylglut | 0.961 | 0.859 | 0.496 | 1.9e-113 | |
| RGD|70970 | 520 | Hmgcs1 "3-hydroxy-3-methylglut | 0.963 | 0.861 | 0.493 | 3.2e-113 |
| TAIR|locus:2137015 HMGS "HYDROXYMETHYLGLUTARYL-COA SYNTHASE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1988 (704.9 bits), Expect = 1.6e-205, P = 1.6e-205
Identities = 372/467 (79%), Positives = 417/467 (89%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS A
Sbjct: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNA 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
VT+L EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGG
Sbjct: 61 VTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESK
Sbjct: 121 TAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
LR SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EK+EGK+FS+++
Sbjct: 181 LRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSIND 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
ADY VFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+L+ DESYQSRDLEK
Sbjct: 241 ADYIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKP YDAKVQP+TLIPK+VGNMYT IH KH++L GKRVV+FSYGSG
Sbjct: 301 VSQQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
TATMFSL+L++ PFS+SNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAKDFV
Sbjct: 361 STATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFV 420
Query: 421 TSKDS--SLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
T+K+ LLAPGTYYL EVDS+YRRFY KK E+GS+ANGH
Sbjct: 421 TTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKG------EDGSVANGH 461
|
|
| DICTYBASE|DDB_G0288461 hgsA "hydroxymethylglutaryl-CoA synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 221/444 (49%), Positives = 298/444 (67%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
+N+GI +++YFP T V QE LE DG S+GKYT+GLGQ MAFC + ED+ S+SL AV
Sbjct: 5 ENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAVN 64
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K GNT I+G+D+ NACYGGT+
Sbjct: 65 NLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTS 124
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
AL N + W+ESS WDGR +VV D AVY +GPARPTGGA V ML+GP+AP+ FES LR
Sbjct: 125 ALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGLR 184
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
G HM + YDFYKP++ SEYP VDGKLS +CY A+D CY +EK GK FSL D
Sbjct: 185 GVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQVD 244
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
+ +FHSPYNKLVQKSF R+L+NDF+ N + A+ E + + +++Y LEK
Sbjct: 245 FALFHSPYNKLVQKSFGRMLYNDFLNNPNDSRYASLEA---YKNVKPEDTYFDSVLEKAL 301
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLT 362
+ K Y KV P+TL+ KQ+GN Y + K ++L GKRV+ FSYGSGL
Sbjct: 302 SAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLA 361
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTS 422
A+ FS K+ + P +++I+ +++ +L R PE F E + L E R+ K++V S
Sbjct: 362 ASAFSFKVEK---P--INHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPS 416
Query: 423 KDSSLLAPGTYYLTEVDSMYRRFY 446
+++ + PG++YL+ VD+ R Y
Sbjct: 417 DETTNMFPGSFYLSSVDNAGIRKY 440
|
|
| UNIPROTKB|Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 228/456 (50%), Positives = 301/456 (66%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 NLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LR
Sbjct: 135 AVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFS 237
G+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFT 254
Query: 238 LSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRD 297
L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD
Sbjct: 255 LNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRD 314
Query: 298 LEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLFS 356
+EK + + L+ K + S L+ Q GNMYT + +L GKR+ +FS
Sbjct: 315 VEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFS 374
Query: 357 YGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHRY 414
YGSGL AT++SLK+++ P S L I S+ ++ +L SR P+ F E MKL E +
Sbjct: 375 YGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTH 434
Query: 415 GAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+++ L GT+YL VD +RR YA++P
Sbjct: 435 HLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470
|
|
| UNIPROTKB|F6RJG0 HMGCS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 228/458 (49%), Positives = 308/458 (67%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V
Sbjct: 60 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQ 119
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 120 NLMERNSLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTA 179
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV ML+GP+AP+ FE LR
Sbjct: 180 AVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVAMLIGPNAPLIFERGLR 239
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEG--KQF 236
G+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY K + ++++K EG + F
Sbjct: 240 GTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIRARWQK-EGNDRDF 298
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y R
Sbjct: 299 TLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 358
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT + +L GKR+ +F
Sbjct: 359 DVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 418
Query: 356 SYGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S L I+ S+ ++ +L SR P+ F E MKL E
Sbjct: 419 SYGSGLAATLYSLKVTQDATPGSALDKIVASICDLKSRLDSRTCVAPDIFAENMKLREDT 478
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 451
+ +++ L GT+YL VD +RR YA++P+
Sbjct: 479 HHLANYIPQSSIDSLFEGTWYLVRVDEKHRRTYARRPS 516
|
|
| ZFIN|ZDB-GENE-040426-1042 hmgcs1 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 232/456 (50%), Positives = 304/456 (66%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+AM++Y P V Q LE +DG GKYT+GLGQ M FCS+ ED+ S+ LT V
Sbjct: 15 KDVGIIAMEVYVPSQYVDQAELEEYDGVGAGKYTVGLGQARMGFCSDREDINSLCLTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E+ + + +GRLEVG+ET+IDKSKS KT LMQ+FE+ GNTD+EGVD+TNACYGGTA
Sbjct: 75 RLMERNGLSYESVGRLEVGTETIIDKSKSTKTVLMQLFEESGNTDVEGVDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
ALFN VNWVESSSWDGRY LVV D AVYA G ARPTGGA AV MLVGP+AP+AFE LR
Sbjct: 135 ALFNAVNWVESSSWDGRYALVVAGDIAVYATGSARPTGGAGAVAMLVGPNAPLAFERGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEGKQ--FS 237
G+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY +K + EG + S
Sbjct: 195 GTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDQCYSVYKNKIHARWQREGTEGRCS 254
Query: 238 LSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAS-SVDEAAKEKLGPFSTLSGDESYQSR 296
L + + VFHSPY KLVQKS ARL+ NDF+ + S +++ L F + +++Y R
Sbjct: 255 LEDFGFMVFHSPYCKLVQKSLARLMLNDFLCHPSPNMESGPFSGLEAFRDVKIEDTYFDR 314
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLF 355
D+EK + + L+D K + S LI Q GNMYT + + +L G+R+ +F
Sbjct: 315 DVEKAFMKASSELFDDKTKASLLISNQNGNMYTPSVYGCLASVLAQHTPQQLAGQRIGVF 374
Query: 356 SYGSGLTATMFSLKLSEGHHPFS-LSNILSVM-NVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSG AT++S+K+++ P S L ++S + ++ +L SR + P F E MKL E
Sbjct: 375 SYGSGFAATLYSIKVTQDGTPGSALDKLVSSLCDLPARLDSRQKVSPGVFAETMKLREET 434
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449
+ +++ L PGT+YLT VD +RR YA++
Sbjct: 435 HHLANYIPQGSVDELFPGTWYLTRVDEKHRRQYARR 470
|
|
| UNIPROTKB|F1SMG8 HMGCS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 226/458 (49%), Positives = 310/458 (67%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG + G+YTIGLGQ M FC++ ED+ S+ +T V
Sbjct: 43 KDVGIVALEIYFPSQYVDQAELEKYDGVAAGRYTIGLGQAKMGFCTDREDINSLCMTVVQ 102
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+ NACYGGTA
Sbjct: 103 NLMERNSLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTINACYGGTA 162
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG A+ +L+GP+AP+ FE LR
Sbjct: 163 AVFNAVNWIESSSWDGRYALVVAGDIAVYAAGNARPTGGVGAIALLIGPNAPLIFERGLR 222
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEG--KQF 236
G+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY K + ++++K EG K F
Sbjct: 223 GTHMQHAYDFYKPDMLSEYPIVDGKLSIECYLSALDRCYSVYRKKIHARWQK-EGNDKDF 281
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + VFHSPY KLVQKS AR+L NDF+ + + + L F + +++Y R
Sbjct: 282 TLNDFGFMVFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 341
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT + EL GKR+ +F
Sbjct: 342 DVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSLYGCLASVLAQYSPQELAGKRIGMF 401
Query: 356 SYGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S L I+ S+ ++ +L SR P+ F ++MKL E
Sbjct: 402 SYGSGLAATLYSLKVTQDATPGSALDKIIASLCDLKSRLDSRTCIAPDVFNDIMKLREDT 461
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 451
+ + +++ L GT+YL VD +RR YA++P+
Sbjct: 462 HHSVNYIPQSSIDSLFEGTWYLVRVDEKHRRTYARRPS 499
|
|
| UNIPROTKB|E2QX73 HMGCS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 227/458 (49%), Positives = 308/458 (67%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCLTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
NL+E++ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 NLMERHSLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ F+ LR
Sbjct: 135 AVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFDRGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEG--KQF 236
G+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY K + ++++K EG K F
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGNDKDF 253
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y R
Sbjct: 254 TLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 313
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT + +L GKR+ +F
Sbjct: 314 DVEKAFMKASAELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 373
Query: 356 SYGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SL++++ P S L I S+ ++ +L SR P+ F E MKL E
Sbjct: 374 SYGSGLAATLYSLRVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDT 433
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 451
+ +++ L GT+YL VD +RR YA++P+
Sbjct: 434 HHLVNYIPQSSVDSLFEGTWYLVRVDEKHRRTYARRPS 471
|
|
| FB|FBgn0010611 Hmgs "HMG Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 236/461 (51%), Positives = 306/461 (66%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
+NVGI A++I FP V Q LE DGAS GKYTIGLGQ M FCS+ EDV S+ LT V+
Sbjct: 7 ENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGFCSDREDVNSLCLTVVS 66
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
LLE+ + +IGRLEVG+ET++DKSKS+K+ LMQ+F + GNTDIEG+D+TNACYGGTA
Sbjct: 67 RLLERQHVKHSEIGRLEVGTETIVDKSKSVKSVLMQLFAESGNTDIEGIDTTNACYGGTA 126
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
ALFN VNWVESSSWDGR L VC D AVYA+G ARPTGGA AV MLVGP+AP+ + LR
Sbjct: 127 ALFNAVNWVESSSWDGRLALAVCADIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLR 186
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLE---GKQ-FSL 238
+HM HAYDFYKP+L+SEYP VDGKLS CYL ALDTCY+ K+++ + KQ SL
Sbjct: 187 ATHMEHAYDFYKPDLSSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASL 246
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKE--KLGPFSTLSGDESYQSR 296
S D +FH+P+ KLVQKS RL FNDF+ SS +E K+ L F+T + + +Y R
Sbjct: 247 STFDAILFHTPFCKLVQKSVGRLSFNDFL--LSSEEERTKQFPDLERFNTATLESTYFDR 304
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYT-XXXXXXXXXXIHNKHSELDGKRVVLF 355
D+EK + ++ +K + S L+ QVGNMYT I EL GKR+ LF
Sbjct: 305 DVEKAFMTQSANIFASKTKKSLLLANQVGNMYTPSVYSGLVSLLISGPAQELVGKRIGLF 364
Query: 356 SYGSGLTATMFSLKLSEGHHPFSLSNILSVMN-VAGKLKSRHEFPPENFVEVMKLMEHRY 414
SYGSGL A+M+S+ +++ F +S ++ V L SR + PE F +M++ E
Sbjct: 365 SYGSGLAASMYSISVTQDAAAFE--KFVSQLDYVQPLLNSREKVAPEQFSALMEVREKNN 422
Query: 415 GAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTN 455
A + + S L PGTYYL +VD+++RR Y + P ++N
Sbjct: 423 HAAPYTPTGSISALFPGTYYLKDVDALHRRTYERTPT-ISN 462
|
|
| MGI|MGI:107592 Hmgcs1 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
Identities = 227/457 (49%), Positives = 305/457 (66%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E++ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 KLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNWVESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+AP+ F+ LR
Sbjct: 135 AVFNAVNWVESSSWDGRYALVVAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDRGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEGKQ--F 236
G+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY K + ++++K EGK F
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGKDKDF 253
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+ NDF+ + + + L F + +++Y R
Sbjct: 254 TLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 313
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT + +L GKRV +F
Sbjct: 314 DVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRVGVF 373
Query: 356 SYGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S L I S+ ++ +L SR P+ F E MKL E
Sbjct: 374 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDT 433
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+ +++ L GT+YL VD +RR YA++P
Sbjct: 434 HHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRP 470
|
|
| RGD|70970 Hmgcs1 "3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 226/458 (49%), Positives = 305/458 (66%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V
Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQ 74
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
L+E+ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTA
Sbjct: 75 KLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTA 134
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
A+FN VNW+ESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+APV F+ LR
Sbjct: 135 AVFNAVNWIESSSWDGRYALVVAGDIAIYASGNARPTGGVGAVALLIGPNAPVIFDRGLR 194
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEGKQ--F 236
G+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY K + ++++K EGK F
Sbjct: 195 GTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGKDKDF 253
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+ NDF+ + + + L F + +++Y R
Sbjct: 254 TLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 313
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLF 355
D+EK + + L++ K + S L+ Q GNMYT + +L GKR+ +F
Sbjct: 314 DVEKAFMKASAELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 373
Query: 356 SYGSGLTATMFSLKLSEGHHPFS-LSNIL-SVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S L I S+ ++ +L SR P+ F E MKL E
Sbjct: 374 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDT 433
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 451
+ +++ L GT+YL VD +RR YA++P+
Sbjct: 434 HHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRPS 471
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5R7Z9 | HMCS1_PONAB | 2, ., 3, ., 3, ., 1, 0 | 0.5065 | 0.9634 | 0.8615 | yes | no |
| P22791 | HMCS2_RAT | 2, ., 3, ., 3, ., 1, 0 | 0.5032 | 0.9612 | 0.8799 | yes | no |
| P54873 | HMCS_ARATH | 2, ., 3, ., 3, ., 1, 0 | 0.8158 | 0.9870 | 0.9956 | yes | no |
| P54872 | HMCSA_DICDI | 2, ., 3, ., 3, ., 1, 0 | 0.5044 | 0.9419 | 0.9087 | yes | no |
| P54874 | HMCS_SCHPO | 2, ., 3, ., 3, ., 1, 0 | 0.4668 | 0.9419 | 0.9798 | yes | no |
| Q01581 | HMCS1_HUMAN | 2, ., 3, ., 3, ., 1, 0 | 0.5065 | 0.9634 | 0.8615 | yes | no |
| P54871 | HMCS_CAEEL | 2, ., 3, ., 3, ., 1, 0 | 0.3819 | 0.9247 | 0.9307 | yes | no |
| P54839 | HMCS_YEAST | 2, ., 3, ., 3, ., 1, 0 | 0.4780 | 0.9354 | 0.8859 | yes | no |
| P54961 | HMCS1_BLAGE | 2, ., 3, ., 3, ., 1, 0 | 0.5154 | 0.9526 | 0.9779 | N/A | no |
| P54869 | HMCS2_MOUSE | 2, ., 3, ., 3, ., 1, 0 | 0.5043 | 0.9634 | 0.8818 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.3 | 0.998 |
| 3rd Layer | 2.3.3.10 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00001077001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (464 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00001656001 | SubName- Full=Chromosome undetermined scaffold_119, whole genome shotgun sequence; (242 aa) | • | • | • | • | 0.883 | ||||
 | GSVIVG00029076001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa) | • | • | • | • | 0.567 | ||||
 | GSVIVG00022848001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (388 aa) | • | • | • | 0.543 | |||||
 | GSVIVG00006002001 | SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (552 aa) | • | • | • | 0.499 | |||||
 | GSVIVG00033429001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (341 aa) | • | • | 0.481 | ||||||
 | GSVIVG00002942001 | SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (550 aa) | • | • | • | 0.473 | |||||
 | GSVIVG00036301001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (575 aa) | • | • | • | 0.458 | |||||
 | GSVIVG00035946001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (413 aa) | • | • | 0.411 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 465 | |||
| PLN02577 | 459 | PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt | 0.0 | |
| TIGR01833 | 457 | TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar | 0.0 | |
| pfam08540 | 282 | pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-c | 1e-143 | |
| COG3425 | 377 | COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt | 1e-102 | |
| pfam01154 | 171 | pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c | 6e-92 | |
| cd00827 | 324 | cd00827, init_cond_enzymes, "initiating" condensin | 3e-86 | |
| TIGR01835 | 379 | TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta | 8e-52 | |
| TIGR00748 | 345 | TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl- | 4e-15 | |
| PRK04262 | 347 | PRK04262, PRK04262, hypothetical protein; Provisio | 3e-14 | |
| COG0332 | 323 | COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] | 9e-09 |
| >gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Score = 936 bits (2421), Expect = 0.0
Identities = 389/465 (83%), Positives = 422/465 (90%), Gaps = 6/465 (1%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
M KNVGILAM++YFPPTCVQQEALEAHDG SKGKYTIGLGQ+CMAFC++VEDVISMSLT
Sbjct: 1 MPKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTV 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
V +LLEKY IDPKQIGRLEVGSETVIDKSKSIKTFLMQ+FE+ GNTDIEGVDSTNACYGG
Sbjct: 61 VKSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAAL NCVNWVESSSWDGRYGLVV DSAVYAEGPARPTGGA AV MLVGP+AP+ FESK
Sbjct: 121 TAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTGGAGAVAMLVGPNAPIVFESK 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALD+CYK C KYEKLEGKQFS+S+
Sbjct: 181 YRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISD 240
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
ADYFVFH+PYNKLVQKSFARL++NDF RNASSVDE AKEKL PF+ LS DESYQ+RDLEK
Sbjct: 241 ADYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEK 300
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360
VSQQ+AKPLYDAKVQP+TLIPKQVGNMYTASLYAALASL+HNKHSEL GKR+++FSYGSG
Sbjct: 301 VSQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSG 360
Query: 361 LTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFV 420
LTATMFSL+L EG HPFSLSNI VM+V+ KLKSRHE PE FVE +KLMEHRYGAKDFV
Sbjct: 361 LTATMFSLRLHEGQHPFSLSNIAKVMDVSEKLKSRHEVSPEKFVETLKLMEHRYGAKDFV 420
Query: 421 TSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465
SKD SLLAPGTYYLTEVDS+YRRFY +K NGS+ANGH
Sbjct: 421 PSKDVSLLAPGTYYLTEVDSLYRRFYDRKA------LNGSIANGH 459
|
Length = 459 |
| >gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Score = 735 bits (1898), Expect = 0.0
Identities = 273/457 (59%), Positives = 332/457 (72%), Gaps = 8/457 (1%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
K+VGILA++IYFP V Q LE +DG S GKYTIGLGQ M FC++ ED+ S+ LT
Sbjct: 1 WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV 60
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
V+ L+E+Y ID QIGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYGG
Sbjct: 61 VSKLMERYNIDYDQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGG 120
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TAALFN +NW+ESSSWDGRY LVV D AVYA+G ARPTGGA AV ML+GP+AP+ FE
Sbjct: 121 TAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAGAVAMLIGPNAPIVFERG 180
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ----- 235
LRGSHM HAYDFYKP+LASEYPVVDGKLS CYL ALD CYK C K EK GK
Sbjct: 181 LRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGSDRK 240
Query: 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQS 295
F+L + DY +FHSPY KLVQKS ARLL+NDF+RN SS D + E L S L +++Y
Sbjct: 241 FTLDDFDYMIFHSPYCKLVQKSLARLLYNDFLRNPSSTDTSLYEGLEALSGLKLEDTYTD 300
Query: 296 RDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHS-ELDGKRVVL 354
RDLEK + +K L+D K +PS L+P QVGNMYTASLY LASL+ +K + EL GKRV +
Sbjct: 301 RDLEKAFMKASKELFDKKTKPSLLVPTQVGNMYTASLYGCLASLLSSKSAQELAGKRVGM 360
Query: 355 FSYGSGLTATMFSLKLSEGHHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEH 412
FSYGSGL A+MFSL++S+ P S + I S+ ++ +L SRH PE F E M+L E
Sbjct: 361 FSYGSGLAASMFSLRVSQDASPGSALDKLIASLSDLKNRLDSRHCVAPEEFEETMELREQ 420
Query: 413 RYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449
+ K+F L PGT+YL VDS +RR YA+K
Sbjct: 421 AHHKKNFTPQGSIDSLFPGTWYLERVDSKHRRSYARK 457
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457 |
| >gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal | Back alignment and domain information |
|---|
Score = 412 bits (1060), Expect = e-143
Identities = 158/282 (56%), Positives = 190/282 (67%), Gaps = 7/282 (2%)
Query: 175 VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLE-- 232
+ F+ LRGSHM HAYDFYKP+L SEYPVVDGKLS CYL ALD+CYK C K EK
Sbjct: 1 IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLQCYLKALDSCYKNYCKKIEKQTKD 60
Query: 233 -GKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASS-VDEAAKEKLGPFSTLSGD 290
G +F L + DY +FHSPY KLVQKS ARLL+NDF+RN SS EKL L +
Sbjct: 61 GGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEKLEALGGLKLE 120
Query: 291 ESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLI-HNKHSELDG 349
+SY RDLEK QL+KPL+ K +PS L+P QVGNMYTASLYAALASL+ H EL G
Sbjct: 121 DSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAG 180
Query: 350 KRVVLFSYGSGLTATMFSLKLSEGHHPFSL--SNILSVMNVAGKLKSRHEFPPENFVEVM 407
KR+ +FSYGSGL A++FSL++S+ P S+ I V+++ KL SRH PE F E M
Sbjct: 181 KRIGMFSYGSGLAASLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETM 240
Query: 408 KLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449
+L E + K+F L PGTYYLT VDS+YRR YA+K
Sbjct: 241 ELREQAHHKKNFTPQGSIDSLFPGTYYLTNVDSLYRRSYARK 282
|
Length = 282 |
| >gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 308 bits (792), Expect = e-102
Identities = 126/444 (28%), Positives = 194/444 (43%), Gaps = 71/444 (15%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+GI+ + Y P ++ E L G K GLG E + ED ++M++ A N
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
L++ IDP +IG + VGSE+ D K T + + N D ACY GTAA
Sbjct: 62 ALKRADIDPSKIGAVIVGSESGPDAVKPTATIVAEALG--LNPSARAADVEFACYAGTAA 119
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFESKLR 182
L + WVES YGLV+ D+A YA G T GA AV L+G + P+ E +
Sbjct: 120 LQAAIGWVESGMIS--YGLVIGADTAQYAPGDALEYTAGAGAVAFLIGKNPPIVAEFEGT 177
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
GS+ + DF++P+ YP VDG+ S+ Y ++ K K S + D
Sbjct: 178 GSYTTDTPDFWRPDG-QPYPYVDGRFSEPAYFKHVENAAKGYMEKT------GLSPDDFD 230
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
Y VFH P K +K+ L F
Sbjct: 231 YIVFHQPNGKFPKKAAKSLGFK-------------------------------------- 252
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLT 362
+ +V+P + P+++GN YT SL LASL+ +++L G R++LFSYGSG
Sbjct: 253 --------EEQVKPGLVYPQRIGNTYTGSLLLGLASLL--DNAKLPGDRILLFSYGSGAG 302
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTS 422
+ FS+ +++G + + L+ R+ ++++ + R +
Sbjct: 303 SEAFSITVTDG-----IEERRKKLAPTVLLEQRNR---LSYIDYELYFKRRKKIRLG--- 351
Query: 423 KDSSLLAPGTYYLTEVDSMYRRFY 446
KD+ G YYL E+D +RR+
Sbjct: 352 KDNEFYDSGDYYLEEIDDHFRRYR 375
|
Length = 377 |
| >gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 6e-92
Identities = 113/171 (66%), Positives = 138/171 (80%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+VGI+A++IYFP V Q LE +DG S GKYTIGLGQ M FC++ ED+ S+ LT V
Sbjct: 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQK 60
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
L+E+ +D IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA
Sbjct: 61 LMERNNLDYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAA 120
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAP 174
LFN +NW+ESSSWDGRY LVV D A+YA+G ARPTGGA AV ML+GP+AP
Sbjct: 121 LFNALNWIESSSWDGRYALVVAGDIAIYAKGNARPTGGAGAVAMLIGPNAP 171
|
Length = 171 |
| >gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 3e-86
Identities = 127/378 (33%), Positives = 166/378 (43%), Gaps = 67/378 (17%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+VGI A+ Y P V E L G GKYT G+GQ MA EDV +M++ A
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
LE+ IDP IG L V +E+ IDK KS T+L E G T+ E D ACYGGTAA
Sbjct: 59 ALERAGIDPDDIGLLIVATESPIDKGKSAATYLA---ELLGLTNAEAFDLKQACYGGTAA 115
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAE---GPARPTGGAAAVVMLVGPDAPVAFESK 180
L N VES W RY LVV +D A Y PT G A MLV + + +
Sbjct: 116 LQLAANLVESGPW--RYALVVASDIASYLLDEGSALEPTLGDGAAAMLVSRNPGILA-AG 172
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
+ +H + + S YPV+DG + C L + +
Sbjct: 173 IVSTHSTSDPGYDF----SPYPVMDGGYPKPCKL----------------AYAIRLTAEP 212
Query: 241 ADYFVF---HSPYNKLVQKSFARLLFNDFMR-------NASSVDEAAKEKLGPFSTLSGD 290
A VF H K+V+K+ R ++ + N + EA +KLG
Sbjct: 213 AGRAVFEAAHKLIAKVVRKALDRAGLSEDIDYFVPHQPNGKKILEAVAKKLGGP------ 266
Query: 291 ESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGK 350
EK SQ ++ ++VGNMY AS+ LASL+ + G
Sbjct: 267 -------PEKASQTR------------WILLRRVGNMYAASILLGLASLLES-GKLKAGD 306
Query: 351 RVVLFSYGSGLTATMFSL 368
RV+LFSYGSG TA F L
Sbjct: 307 RVLLFSYGSGFTAEAFVL 324
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324 |
| >gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 8e-52
Identities = 118/446 (26%), Positives = 185/446 (41%), Gaps = 72/446 (16%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + P + AL G K+ IG+GQ+ MA ED+++M+ +A +
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG----VDSTNACYGG 120
L++ D ++I + G+E+ ID+SK+ ++ G ++ + ACYG
Sbjct: 61 LDRN--DKQKIDMVIFGTESGIDQSKAAAVYV------HGLLGLQPFCRSFELKQACYGA 112
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFES 179
TAAL V S R LV+ +D A Y E P PT GA AV MLV D + +
Sbjct: 113 TAALQMAKGHVALSP--DRKVLVIASDIAKYGLESPGEPTQGAGAVAMLVSADPKLLAIN 170
Query: 180 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239
+ + DF++PN S +VDG+ S YL A + + + + SL+
Sbjct: 171 EDSVLYTDDIMDFWRPN-YSTTALVDGQYSNEQYLNAFENAWN------DYAKRTGLSLA 223
Query: 240 NADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLE 299
+ F FH P+ K+ K+ +L +N DE+ +
Sbjct: 224 DFAAFCFHVPFTKMGLKALRHIL----KKNYEDEDESVQNAYL----------------- 262
Query: 300 KVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGS 359
S + ++VGN+YT SLY LASL+ N + G ++ LFSYGS
Sbjct: 263 ----------------ESIIYNREVGNLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGS 306
Query: 360 GLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDF 419
G A FS L G+ + L LK+R ++ E L E
Sbjct: 307 GAVAEFFSGTLVAGYR-----DHLKKERHLALLKNRTNL---SYAEYEALFEET-----L 353
Query: 420 VTSKDSSLLAPGTYYLTEVDSMYRRF 445
T D G + L ++ R +
Sbjct: 354 PTDGDQPGEDRGFFRLAGINDHKRIY 379
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379 |
| >gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 4e-15
Identities = 92/371 (24%), Positives = 143/371 (38%), Gaps = 66/371 (17%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
GI+ Y P ++ E + G + GL E A ED ++ + A N
Sbjct: 2 AGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNA 61
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAA 123
L++ KIDPK IG + VGSE+ ++K + E G T D+ D AC GTA
Sbjct: 62 LKRAKIDPKDIGAVYVGSES---HPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAG 118
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPA-RPTGGAAAVVMLVGPDAPVAFESKLR 182
+ C+ V S +YGL + D+A A G A T GA ++G VA +
Sbjct: 119 IQACMGLVASGM--IKYGLAIGADTAQGAPGDALEYTAGAGGAAYIIGEKNTVA-YFEGT 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLS-QTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
S+ + DF++ YP G+ + + Y + T K L +E + +
Sbjct: 176 YSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHVVTAAKGL------MEKLGLTPEDF 228
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
DY VFH P K A LG
Sbjct: 229 DYAVFHQPNGKFYLV--------------------AARMLG------------------- 249
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGL 361
+V+P L P+ +GN Y+ + L++++ G R++ SYGSG
Sbjct: 250 -------FPKEQVKPGLLTPR-IGNTYSGATPVGLSAVLDIAEP---GDRILAVSYGSGA 298
Query: 362 TATMFSLKLSE 372
+ FS+ + +
Sbjct: 299 GSDAFSIVVQD 309
|
This family of archaeal proteins shows considerable homology and identical active site residues to the bacterial hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase, modeled by TIGR01835) which is the second step in the mevalonate pathway of IPP biosynthesis. An enzyme from Pseudomonas fluorescens involved in the biosynthesis of the polyketide diacetyl-phloroglucinol is more closely related, but lacks the active site residues. In each of the genomes containing a member of this family there is no other recognized HMG-CoA synthase, although other elements of the mevalonate pathway are in evidence. The only archaeon currently sequenced which lacks a homolog in this pathway is Halobacterium, which _does_ contain a separate HMG-CoA synthase. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 345 |
| >gnl|CDD|235266 PRK04262, PRK04262, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 97/378 (25%), Positives = 149/378 (39%), Gaps = 76/378 (20%)
Query: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVT 62
VGI+ Y P ++ E + G GLG E + ED ++++ A
Sbjct: 1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAAR 60
Query: 63 NLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGT 121
N L++ IDPK+IG + VGSE+ K T + E G T D+ D AC GT
Sbjct: 61 NALKRAGIDPKEIGAVYVGSESHPYAVKPTATI---VAEALGATPDLTAADLEFACKAGT 117
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPA-RPTGGAAAVVMLVGPDAPVA-FES 179
AAL + V+S +Y L + D+A A G A T A ++G + +A E+
Sbjct: 118 AALQAAMGLVKSGM--IKYALAIGADTAQGAPGDALEYTAAAGGAAFIIGKEEVIAEIEA 175
Query: 180 KLRGSHMSHAYDFYKPNLASEYPVVDGKL-SQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238
S+ + DF++ YP G+ + Y + + K L K
Sbjct: 176 TY--SYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGL------KP 226
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDL 298
S+ DY VFH P K + AK LG F+
Sbjct: 227 SDYDYAVFHQPNGKFPLR-------------------VAK-MLG-FT------------- 252
Query: 299 EKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELD----GKRVVL 354
+V+P L P +GN Y+ S LA++ LD G R+++
Sbjct: 253 ------------KEQVKPGLLTPY-IGNTYSGSALLGLAAV-------LDVAKPGDRILV 292
Query: 355 FSYGSGLTATMFSLKLSE 372
S+GSG + FS+ +++
Sbjct: 293 VSFGSGAGSDAFSITVTD 310
|
Length = 347 |
| >gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 76/373 (20%), Positives = 110/373 (29%), Gaps = 75/373 (20%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
N IL + Y P V LE S G ++ E +++ A
Sbjct: 3 NAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARK 62
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
LE I P I + V + T S + + G D AC G A
Sbjct: 63 ALEDAGISPDDIDLIIVATSTPDHLFPSTAC---LVQARLGLGGAPAFDLQAACSGFLYA 119
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPA-RPTG-----GAAAVVMLVGPDAP--- 174
L + S + LVV ++ R T GA AVV +
Sbjct: 120 LSVADGLIRSGG--YKNVLVVGAETLSRILDWTDRDTCVLFGDGAGAVV--LEATEDDNG 175
Query: 175 -VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ---TCYLMALDTCYKCLCSKYEK 230
+ + GS Y + + G L + A+ K + E
Sbjct: 176 ILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAI---EEV 232
Query: 231 LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGD 290
LE + + D+FV H N + EA +KLG
Sbjct: 233 LEKAGLTPEDIDWFVPHQA--------------NLRII------EAIAKKLG------IP 266
Query: 291 ESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSEL-DG 349
E EKV + K GN AS+ AL + + G
Sbjct: 267 E-------EKVVVTVDK----------------YGNTSAASIPLALDEALREG--RIKPG 301
Query: 350 KRVVLFSYGSGLT 362
V+L ++G GLT
Sbjct: 302 DLVLLEAFGGGLT 314
|
Length = 323 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| KOG1393 | 462 | consensus Hydroxymethylglutaryl-CoA synthase [Lipi | 100.0 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 100.0 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 100.0 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 100.0 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 100.0 | |
| PF08540 | 282 | HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s | 100.0 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 100.0 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 100.0 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 100.0 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 100.0 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 100.0 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 100.0 | |
| PRK06840 | 339 | hypothetical protein; Validated | 100.0 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 100.0 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 100.0 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 100.0 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 100.0 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 100.0 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 100.0 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 100.0 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 100.0 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 100.0 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 100.0 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 100.0 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 100.0 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.95 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 99.91 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 99.89 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.76 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 99.76 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 99.7 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.68 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.6 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 99.54 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 99.44 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.43 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.42 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.4 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 99.32 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 99.28 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 99.27 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.27 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.26 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.24 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 99.23 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.2 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.2 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.2 | |
| PF02797 | 151 | Chal_sti_synt_C: Chalcone and stilbene synthases, | 99.19 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 99.18 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.17 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.16 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 99.14 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.13 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.13 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.12 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.09 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.09 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.08 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.07 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.07 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.07 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.05 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.03 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.02 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.02 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 99.01 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.01 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 98.99 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 98.98 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.98 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 98.97 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 98.96 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 98.94 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 98.93 | |
| PRK06158 | 384 | thiolase; Provisional | 98.92 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 98.91 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 98.91 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 98.89 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 98.89 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 98.86 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 98.86 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 98.83 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 98.82 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 98.78 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 98.75 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.74 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.74 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 98.72 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.69 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 98.68 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 98.65 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 98.65 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 98.64 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 98.64 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 98.64 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 98.63 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 98.63 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 98.61 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 98.55 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 98.55 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 98.5 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.47 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 98.46 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 98.45 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 98.43 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 98.38 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 98.37 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 98.33 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.33 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 98.3 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 98.26 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 98.25 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 98.2 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 98.0 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 97.8 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 97.58 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 97.29 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 97.27 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 96.24 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 95.86 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 95.84 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 95.15 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 94.82 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 94.13 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 94.02 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 93.32 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 92.11 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 91.78 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 91.42 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 90.89 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 90.84 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 90.44 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 90.32 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 89.77 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 89.76 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 89.56 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 89.34 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 88.48 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 88.42 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 87.9 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 86.95 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 86.51 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 86.02 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 85.84 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 85.58 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 84.98 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 84.77 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 84.52 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 84.22 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 84.19 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 83.56 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 82.87 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 82.74 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 82.52 | |
| PRK06840 | 339 | hypothetical protein; Validated | 82.31 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 81.98 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 81.33 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 81.24 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 81.11 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 80.71 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 80.46 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 80.24 |
| >KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-105 Score=766.91 Aligned_cols=444 Identities=59% Similarity=0.967 Sum_probs=414.3
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
|.+|||.+|.+|+|.++|+|+||+++.|++.+||++|+||.+|+||.+.||+.+|+.+++++++++.+|+++.|++|.||
T Consensus 9 p~dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGRLEVG 88 (462)
T KOG1393|consen 9 PKDVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGRLEVG 88 (462)
T ss_pred ccccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHhCCChhhcceEEec
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCcccc
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGG 161 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~G 161 (465)
|||-+|.+||+.+.|+++|+.+||.+++++|..||||||++||.+|.+||+++.||||.+|||++|++.|..+++|||+|
T Consensus 89 TETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~~G~aRpTGG 168 (462)
T KOG1393|consen 89 TETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYAKGNARPTGG 168 (462)
T ss_pred ceeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEecCCCCCCCCC
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh--hcCCCCCC
Q 012353 162 AAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL--EGKQFSLS 239 (465)
Q Consensus 162 dGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~~ 239 (465)
+|||||||+|++++.|+++++++||+|+||||+|+..++||+|||++|++||+.+++.||..|++++... ...+..++
T Consensus 169 AgAVAmLIgPnApi~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY~~~~kK~~~~~~~~~~~~l~ 248 (462)
T KOG1393|consen 169 AGAVAMLIGPNAPIIFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCYTVYRKKIAAQWQKSGSDNLN 248 (462)
T ss_pred cceEEEEEcCCCceEecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHHHHHHHHHHHHhccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998653 22245578
Q ss_pred CCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcc
Q 012353 240 NADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTL 319 (465)
Q Consensus 240 did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~ 319 (465)
+||+++||.|++||++|.+++|+|+||..++....+.. .+ ...+..+++|+||++||++++++++.|.+|++||+.
T Consensus 249 ~fdy~ifHsP~cKlvqKs~arl~ynDf~~~~~~~~~~~--~~--~~~~~l~~s~~dr~~ek~~~~~s~~~~~~Kt~~sl~ 324 (462)
T KOG1393|consen 249 SFDYIIFHSPYCKLVQKSLARLLYNDFLLNPSQLPESA--GL--ESTLKLDESYTDRDLEKAFIKISKPIFKKKTKPSLL 324 (462)
T ss_pred cCCeEEEeCchhhhHHHHHHHhhhhhhhhccccccccc--cc--cccccccccccchHHHHHHHHHhHHHHHhhccceeE
Confidence 99999999999999999999999999987665432211 11 147888999999999999999999999999999999
Q ss_pred cccccCccchhhHHHHHHHHHHhcC-CCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcC
Q 012353 320 IPKQVGNMYTASLYAALASLIHNKH-SELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEF 398 (465)
Q Consensus 320 ~~~~~GN~~taS~~l~L~~ll~~~~-~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l 398 (465)
+++++|||||+|+|.+|+++|...+ ....|+||++||||||+++++|++++..+.++ ..+.+++..++.+||++|+++
T Consensus 325 ~~~~~GNmYTaSly~~l~sll~~~~~d~l~Gkrig~FSYGSGlAAs~fs~~v~~da~p-~~k~~~~~~d~~~rL~~R~~~ 403 (462)
T KOG1393|consen 325 APRRNGNMYTASLYASLASLLSAVPADELAGKRIGMFSYGSGLAASMFSLRVTQDATP-LDKIIASLTDLKKRLDSRKCV 403 (462)
T ss_pred eeccCCccccHHHHHHHHHHHhccchhhhhccEEEEEeecCcchhheEEEEecCCCCc-hhhhhHhhhhHHHHhhhcccc
Confidence 9999999999999999999999732 23689999999999999999999999875444 233456678999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeecc
Q 012353 399 PPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450 (465)
Q Consensus 399 ~~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~~ 450 (465)
+|++|++.|++||+.|++.+|.|.+++++|+||||||++||++|||.|.++|
T Consensus 404 tPe~F~e~melre~~~~~~n~~p~gs~~~Lf~gtyYL~~vd~~~RRsY~~~~ 455 (462)
T KOG1393|consen 404 TPEEFTEIMELREDTHHKVNFVPQGSIESLFPGTYYLKRVDELHRRSYTLKP 455 (462)
T ss_pred CHHHHHHHHHhhhhhcccccCCCCCchhhcCCCceehhhhhHHhhhccccCC
Confidence 9999999999999999999999999999999999999999999999999998
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-100 Score=787.19 Aligned_cols=459 Identities=85% Similarity=1.326 Sum_probs=420.8
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
||++|||.++++|+|+++|++++|++.+|.+++|+++||++|+|++++++||+++||++||+++|+++|++|++||+||+
T Consensus 1 ~~~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~agid~~~Idlliv 80 (459)
T PLN02577 1 MPKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKYNIDPKQIGRLEV 80 (459)
T ss_pred CCCccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHHhhccceeEeccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCccc
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG 160 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~ 160 (465)
+|+|+++.+|++|++|+++++++|++++.+||+++||+||++||++|.+||+++.+|+++||||++|+++|..++.++|+
T Consensus 81 aTeT~~d~~ps~A~~v~~ll~~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~~~~e~t~ 160 (459)
T PLN02577 81 GSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTG 160 (459)
T ss_pred EcCCCCCCCCchHHHHHHHHHHhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccCCCCCCCC
Confidence 99999999999999998777666678999999999999999999999999999977789999999999999877789999
Q ss_pred ccceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012353 161 GAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (465)
Q Consensus 161 GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~d 240 (465)
||||+||||++++++.++....++++.+++|||||.+.++||.|||++|+++|++++++|+++++++.....+.+++++|
T Consensus 161 GdGA~A~lv~~~~~~~l~~~~~g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~~g~~~~d 240 (459)
T PLN02577 161 GAGAVAMLVGPNAPIVFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISD 240 (459)
T ss_pred CcceEEEEEccCCCceeecccccccCcccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Confidence 99999999999887777766788999999999999987889999999999999999999999999987544445788999
Q ss_pred CceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCccc
Q 012353 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLI 320 (465)
Q Consensus 241 id~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~ 320 (465)
||++||||||+||++|++++|+|+||.++...+++..++.+.++..++.++.|.||++||++..++++.|.+||+||+.+
T Consensus 241 ~d~~vfHqP~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ps~~~ 320 (459)
T PLN02577 241 ADYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKVSQQVAKPLYDAKVQPTTLI 320 (459)
T ss_pred cCEEEecCCccchhHHHHHHHhhhhhhhccccccchhhhccccccccchhhccccchHHHHHHHhhHHHHHHhhccHhHH
Confidence 99999999999999999999999988754321122234556667788899999999999999999999999999999999
Q ss_pred ccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcCCH
Q 012353 321 PKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPP 400 (465)
Q Consensus 321 ~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l~~ 400 (465)
++++|||||||+|++|+++|++....++|+||+|||||||+.+++|+++++++..++.+++++.+.+++++|++|++||+
T Consensus 321 ~~~vGN~YTaSlyl~L~SlL~~~~~~~~G~rIg~fSYGSG~~se~fs~~v~~~~~~~~~~~~~~~~~~~~~L~~R~~ls~ 400 (459)
T PLN02577 321 PKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSGLTATMFSLRLHEGQHPFSLSNIAKVMDVSEKLKSRHEVSP 400 (459)
T ss_pred HHhcCcccchHHHHHHHHHHhhccccCCCCEEEEEeecCCccceeEEEEEeCCCccccHHHHHHhccHHHHHhCCccCCH
Confidence 99999999999999999999874335699999999999999999999999995444446788888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeeccCCccccCCCCCCCCC
Q 012353 401 ENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 465 (465)
Q Consensus 401 ~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~~~~~~~~~~~~~~~~~ 465 (465)
+||+++++.|+..++..+|.|..+.+.++||+|||++|+++|||+|++++ +||+++|||
T Consensus 401 ~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~R~Y~~~~------~~~~~~~~~ 459 (459)
T PLN02577 401 EKFVETLKLMEHRYGAKDFVPSKDVSLLAPGTYYLTEVDSLYRRFYDRKA------LNGSIANGH 459 (459)
T ss_pred HHHHHHHHHHHhhccCcCCCcCCcccccCCCceEEeEEcCCcEEEEEecC------CCCccCCCC
Confidence 99999999999999999999999988899999999999999999999987 789999987
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-96 Score=754.53 Aligned_cols=446 Identities=61% Similarity=0.990 Sum_probs=406.5
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEee
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~ 83 (465)
+|||.+|++|+|+.+|++++|++.+|++++||++||++|+|+|++++||+++||++||+++|++++++|++||+||++|+
T Consensus 1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a~id~~~Id~Liv~Te 80 (454)
T TIGR01833 1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYNIDYNQIGRLEVGTE 80 (454)
T ss_pred CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHheechhheecccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCcccccc
Q 012353 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAA 163 (465)
Q Consensus 84 s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdG 163 (465)
|+++.+|+++++|+++||++|+++|++||+++||+|+++||++|.+||+++.+|+++||||++|++.|.+.+.++|+|||
T Consensus 81 S~~d~sps~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~~~~~~~t~GaG 160 (454)
T TIGR01833 81 TIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAG 160 (454)
T ss_pred CCCCCCCchHHHHHHHHHhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccccccCCCeeeccccc
Confidence 99999999999999999877778999999999999999999999999999987889999999999999888889999999
Q ss_pred eeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh-h----cCCCCC
Q 012353 164 AVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-E----GKQFSL 238 (465)
Q Consensus 164 A~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~-~----~~~~~~ 238 (465)
|+||||+++|++.++++..++|+.+++|||||...++||.|||++|+.||++++++||..|+++.... . +.+..+
T Consensus 161 AvAmLv~~~~~~~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~~~a~~~~~~~~~~~~ 240 (454)
T TIGR01833 161 AVAMLIGPNAPIVFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKFTL 240 (454)
T ss_pred eEEEEeccCccceecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCH
Confidence 99999999998778876688999999999999976779999999999999999999999998886431 1 125778
Q ss_pred CCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCc
Q 012353 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPST 318 (465)
Q Consensus 239 ~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~ 318 (465)
+|||++|||+||+||++|++++++++++...+..+.+..|+.+.++..++.+++|+||+++|.+.+++++.|.+||+||+
T Consensus 241 ~dfd~~~fH~P~~km~~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ps~ 320 (454)
T TIGR01833 241 NDFDYMVFHSPYCKLVQKSLARLLYNDFLRNPSSIDTALYEGLEALSTLKLEDTYFDRDLEKAFMKASKELFDKKTKPSL 320 (454)
T ss_pred hHcCEEeccCCcccHHHHHHHHHHHhhhhhccccccchhhcccchhhccccccccchhhHHHHHHhhhhhhHHHhhcchh
Confidence 99999999999999999999999988887544222223366677778899999999999999999999999999999999
Q ss_pred ccccccCccchhhHHHHHHHHHHhcCC-CCCCCEEEEEEeccchheeeeEEEEeCCCCCC-c-hhhHHhhccHHHHhccC
Q 012353 319 LIPKQVGNMYTASLYAALASLIHNKHS-ELDGKRVVLFSYGSGLTATMFSLKLSEGHHPF-S-LSNILSVMNVAGKLKSR 395 (465)
Q Consensus 319 ~~~~~~GN~~taS~~l~L~~ll~~~~~-~~~G~rill~syGsG~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~L~~R 395 (465)
.+++++|||||||+|++|+++|++... .+.|+||+|||||||+++++|+++++++..++ . ++......++.++|++|
T Consensus 321 ~~~~~vGN~YtaSlyl~L~Sll~~~~~~~~~g~ri~~fSYGSG~~se~fs~~v~~~~~~~~~~~~~~~~~~~~~~~L~~R 400 (454)
T TIGR01833 321 LVPNQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMFSYGSGLAASMFSLRVSQDASPGSALDKLIASLSDLKNKLDSR 400 (454)
T ss_pred HHHHhcCchhhhHHHHHHHHHHhhCCccccCCCEEEEEeccCCcceeeEEEEEeCCccccchHHHHHHHHhhHHHHHhcC
Confidence 999999999999999999999987432 56899999999999999999999999943321 1 44555556899999999
Q ss_pred CcCCHHHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeec
Q 012353 396 HEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449 (465)
Q Consensus 396 ~~l~~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~ 449 (465)
+++|++||+++++.|++.|+..+|.|.++.+.++||+|||++||++|||+|++|
T Consensus 401 ~~~s~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~R~Y~~~ 454 (454)
T TIGR01833 401 HCVAPEEFEETMELREQAHHKKNFTPQGSIDLLFPGTWYLERVDSKHRRSYARK 454 (454)
T ss_pred ccCCHHHHHHHHHhhhhhcccccccccccccccCCCcEEEeeecCCceEEeccC
Confidence 999999999999999999999999999999899999999999999999999986
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-82 Score=624.24 Aligned_cols=375 Identities=34% Similarity=0.527 Sum_probs=349.2
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEe
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T 82 (465)
|+|||.++++|+|.++|+++||++.+|.+++|+++|+++..|+|++.+||++|||++||+++|+++++||++|++|+|||
T Consensus 1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT 80 (377)
T COG3425 1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS 80 (377)
T ss_pred CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhccCCCHHHCceEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCC-CCCcccc
Q 012353 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGG 161 (465)
Q Consensus 83 ~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~-~~~~t~G 161 (465)
||++|.+|++|++|++.||+ +++++++|+++||++||+||++|.+||.+|.+ +++|||++|++.|.++ ..|+|+|
T Consensus 81 ES~~d~~K~~at~v~~~lg~--~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~--~~~LvI~sD~a~~~~~~~~E~t~G 156 (377)
T COG3425 81 ESGPDAVKPTATIVAEALGL--NPSARAADVEFACYAGTAALQAAIGWVESGMI--SYGLVIGADTAQYAPGDALEYTAG 156 (377)
T ss_pred CCCcccccchHHHHHHHhCC--CCceehhhHHHHHHHHHHHHHHHHHHHHcCCc--cceEEEeehhhccCCCcccCccCC
Confidence 99999999999999999999 89999999999999999999999999999977 8999999999999887 6799999
Q ss_pred cceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 012353 162 AAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241 (465)
Q Consensus 162 dGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~di 241 (465)
+|||||||++++++..+....++|+.|++|||||.+. .||.++|++|..+|++++..+++.|+++. +++++||
T Consensus 157 AGavA~lIg~n~~~~a~~~~~~syt~d~~DFwRp~~~-~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~------gls~~df 229 (377)
T COG3425 157 AGAVAFLIGKNPPIVAEFEGTGSYTTDTPDFWRPDGQ-PYPYVDGRFSEPAYFKHVENAAKGYMEKT------GLSPDDF 229 (377)
T ss_pred CceEEEEEccCCCeEEEecCceEEecCCCcccccCCC-cccccCceecHHHHHHHHHHHHHHHHHHh------CCChhhh
Confidence 9999999999977766666889999999999999955 89999999999999999999999999998 7889999
Q ss_pred ceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccc
Q 012353 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIP 321 (465)
Q Consensus 242 d~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~ 321 (465)
|++|||+||+||++|+++.|++ + .++|+||+.++
T Consensus 230 dy~vfH~P~~k~~~ka~k~l~~------------------------~----------------------~e~v~~~l~~~ 263 (377)
T COG3425 230 DYIVFHQPNGKFPKKAAKSLGF------------------------K----------------------EEQVKPGLVYP 263 (377)
T ss_pred CeEEecCCCCchHHHHHHHhCc------------------------c----------------------HhhcCccchhh
Confidence 9999999999999999998842 1 26889999999
Q ss_pred cccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcCCHH
Q 012353 322 KQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPE 401 (465)
Q Consensus 322 ~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l~~~ 401 (465)
+++||+||||+|++|+++|+++ . ++|+||+++|||||+.+++|++++++ +++++++...+..+|.+|+++|+.
T Consensus 264 ~~vGN~YtgS~~L~Las~L~~a-~-~~G~rIl~~SYGSGa~s~~fs~~v~~-----~~~~~~~~~~~~~~l~~R~~ls~~ 336 (377)
T COG3425 264 QRIGNTYTGSLLLGLASLLDNA-K-LPGDRILLFSYGSGAGSEAFSITVTD-----GIEERRKKLAPTVLLEQRNRLSYI 336 (377)
T ss_pred hhcCcccchhHHHHHHHHHhhc-C-CCCCEEEEEeeCCCcceeEEEEEecc-----cHHHHhhhcchHHHHHhhccCCHH
Confidence 9999999999999999999994 3 79999999999999999999999999 899999899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeee
Q 012353 402 NFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAK 448 (465)
Q Consensus 402 ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~ 448 (465)
+|+.+++.|.+.....++.+ ...+.|||..|+++ .|.|.+
T Consensus 337 dYe~~~~~~~~~~~~~~~~~------~~~~~~~l~~i~~~-~R~y~~ 376 (377)
T COG3425 337 DYELYFKRRKKIRLGKDNEF------YDSGDYYLEEIDDH-FRRYRY 376 (377)
T ss_pred HHHHHHhhhccccccccccc------ccCCceEEeeccCC-ceeEee
Confidence 99999998777665555544 45688999999995 556643
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=567.99 Aligned_cols=377 Identities=29% Similarity=0.449 Sum_probs=331.1
Q ss_pred eEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeec
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSET 84 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s 84 (465)
|||.+|++|+|+++|++++|++.+|++++|+..|+|++++++++++||+++|+++|++++|+++ ++++||+|+++|+|
T Consensus 1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a--~~~~Id~li~~t~s 78 (379)
T TIGR01835 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN--DKQKIDMVIFGTES 78 (379)
T ss_pred CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC--CHhhCCEEEEEeCC
Confidence 7999999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred CCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCC-CCCcccccc
Q 012353 85 VIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGGAA 163 (465)
Q Consensus 85 ~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~-~~~~t~GdG 163 (465)
+++.+|+++.+|+++||+ .++++++|++++|+||+.||++|.+||++|.+ ++||||++|+++|... +.++|||||
T Consensus 79 ~~~~~~s~a~~v~~~Lgl--~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~--~~aLVv~~D~a~~~~~~~~~~~~GdG 154 (379)
T TIGR01835 79 GIDQSKAAAVYVHGLLGL--QPFCRSFELKQACYGATAALQMAKGHVALSPD--RKVLVIASDIAKYGLESPGEPTQGAG 154 (379)
T ss_pred CCCCCCCHHHHHHHHhCC--CCCceEEEeccccHHHHHHHHHHHHHHHcCCC--CeEEEEEeehhhcccCCCCCccccCc
Confidence 999999999999999998 56799999999999999999999999999954 9999999999988653 568999999
Q ss_pred eeeeeecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012353 164 AVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242 (465)
Q Consensus 164 A~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did 242 (465)
|+||||++++++ .++. ..+.++.+.+|||+|.+ ..+|.++|++++.+|++.+++++++++++. +++++|||
T Consensus 155 A~A~Ll~~~~~i~~~~~-~~~~~t~~~~df~~p~~-~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~------g~~~~did 226 (379)
T TIGR01835 155 AVAMLVSADPKLLAINE-DSVLYTDDIMDFWRPNY-STTALVDGQYSNEQYLNAFENAWNDYAKRT------GLSLADFA 226 (379)
T ss_pred cEEEEEecCCCeeEEec-cceeeecCCCCccCCCC-CCceeECcHHHHHHHHHHHHHHHHHHHHHh------CCCHHHcC
Confidence 999999998764 3433 23467788899999984 668999999999999999999999999887 78999999
Q ss_pred eeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCccccc
Q 012353 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPK 322 (465)
Q Consensus 243 ~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~ 322 (465)
+++|||||.+|+.+++++++ +.+ +++. .+.+.+.+++|+.+.+
T Consensus 227 ~~i~H~p~~~~~~k~~~~~l-~~~-------------------~~~~-----------------~~~~~~~~~~s~~~~~ 269 (379)
T TIGR01835 227 AFCFHVPFTKMGLKALRHIL-KKN-------------------YEDE-----------------DESVQNAYLESIIYNR 269 (379)
T ss_pred EEEECCCCCcHHHHHHHHHH-hhc-------------------cccc-----------------HHHHHHHhhhhhhhhh
Confidence 99999999999999988873 110 2221 1223445567888889
Q ss_pred ccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcCCHHH
Q 012353 323 QVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPEN 402 (465)
Q Consensus 323 ~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l~~~e 402 (465)
++|||||||+|++|.+++++.+++++||+|+|+|||||+++++|++++++ ++++...+.++.++|++|+.+++++
T Consensus 270 ~~GN~~sas~~l~L~~~l~~~~~~~~Gd~ill~s~GsG~~ae~~~~~~~~-----~~~~~~~~~~~~~~l~~r~~~~~~~ 344 (379)
T TIGR01835 270 EVGNLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGSGAVAEFFSGTLVA-----GYRDHLKKERHLALLKNRTNLSYAE 344 (379)
T ss_pred hcCchHhHHHHHHHHHHHHhcccCCCCCEEEEEEecCCcceeeEEEEEcc-----cHHHHHhcccHHHHHhCCccCCHHH
Confidence 99999999999999999998326789999999999999999999999998 7988888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEe
Q 012353 403 FVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFY 446 (465)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y 446 (465)
|+++++.+.. ++.+.....+|+|||++|++ |+|+|
T Consensus 345 y~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~-~~r~y 379 (379)
T TIGR01835 345 YEALFEETLP--------TDGDQPGEDRGFFRLAGIND-HKRIY 379 (379)
T ss_pred HHHHHHhccC--------CCCCcccCCCCcEEEEEecc-cEeeC
Confidence 9999986543 11113345689999999999 78888
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=473.33 Aligned_cols=270 Identities=54% Similarity=0.864 Sum_probs=224.3
Q ss_pred cccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhh---cCCCCCCCCceeeccCCch
Q 012353 175 VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLE---GKQFSLSNADYFVFHSPYN 251 (465)
Q Consensus 175 ~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~did~~~~H~p~~ 251 (465)
++|++++.|+||+|+||||||+..++||+|||++|++||+++++.||+.|+++..+.. ..+..++|||+++||.||+
T Consensus 1 iv~d~~~~~~~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~~~~~~~~~~~~l~~~d~~~fH~Py~ 80 (282)
T PF08540_consen 1 IVFDRGLRGSHMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVEKLANRGNKGTSLDDFDYVCFHSPYC 80 (282)
T ss_dssp EEEETTEEEEEE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST--GGG-SEEEE--SSH
T ss_pred CcccCCCceeehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccccceEEEecCch
Confidence 3577789999999999999999899999999999999999999999999999975432 3467889999999999999
Q ss_pred HHHHHHHHHhhhhhhcccccch-hhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchh
Q 012353 252 KLVQKSFARLLFNDFMRNASSV-DEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTA 330 (465)
Q Consensus 252 km~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~ta 330 (465)
||++|++.+|+++|+...+... .+...+.+.++.+++.++++.||+++|++.+.+++.|++||+||+.+++++||||||
T Consensus 81 klv~Ka~~rl~~~D~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~dr~lek~~~~~s~~~~~~kv~psl~~~~~vGN~YTa 160 (282)
T PF08540_consen 81 KLVQKAFARLLYNDFLRNPSSEEFEEIDAELAPFRDLPLEESYFDRDLEKAFMKASKEDFERKVEPSLLYSRQVGNMYTA 160 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHCCHGGGTT--GGGHCTHHHHHHHHHHHHHHHHHHHCHHHTHHHHHHB--GGG
T ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhhhhccCCcccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCceehH
Confidence 9999999999999998766542 223345566677889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-hcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhh-------HHhhccHHHHhccCCcCCHHH
Q 012353 331 SLYAALASLIH-NKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSN-------ILSVMNVAGKLKSRHEFPPEN 402 (465)
Q Consensus 331 S~~l~L~~ll~-~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~R~~l~~~e 402 (465)
|+|++|+++|. .....+.|+||+|||||||+++++|++++++ ++++ +.+.+++.+||++|+++||+|
T Consensus 161 Sly~~L~SlL~~~~~~~l~GkrI~~FSYGSG~~s~~fs~~v~~-----~~~~~~~~~~~i~~~~dl~~rL~~R~~~s~ee 235 (282)
T PF08540_consen 161 SLYLGLASLLSSAEADDLAGKRIGMFSYGSGLASEFFSGRVQP-----GAEEGSLLNRLIAKALDLKERLDARTKLSPEE 235 (282)
T ss_dssp HHHHHHHHHHHHHHSCHHTT-EEEEEEEETTTEEEEEEEEE-T-----TGGGTSHHHHHHHHHHCHHHHHHTSEEE-HHH
T ss_pred HHHHHHHHHhhccCccccCCCEEEEEEecCCcceeEEEEEEeC-----CccccchhhhHHHhhhhHHHHHhcCcCCCHHH
Confidence 99999999993 2234568999999999999999999999999 5555 777889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeec
Q 012353 403 FVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449 (465)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~ 449 (465)
|++++++|++.|++.+|.|.++++.++||+|||++||++|||+|+||
T Consensus 236 ye~~~~~re~~~~~~~y~p~~~~~~l~~GtyyL~~VD~~~RR~Y~rk 282 (282)
T PF08540_consen 236 YEEILKLREKTYGAKDYTPSGDISSLFPGTYYLTRVDDKHRRTYARK 282 (282)
T ss_dssp HHHHHHHHHHHTTHTSBETTSTGGGSGTTSEEEEEEETTSEEEEEE-
T ss_pred HHHHHHhhhhhccccCCCCCCcccccCCCCEEEcccCCcceEEeccC
Confidence 99999999999999999999999999999999999999999999986
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A .... |
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=412.34 Aligned_cols=306 Identities=21% Similarity=0.223 Sum_probs=262.7
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
++++|.++|.|+|+..++++++++..+.+.+|+ .+||.+||.+ .++|...+||++||++||+++|++|+|||+||+
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a--~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~ 79 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIA--ADDETTSDLAVEAARKALEDAGISPDDIDLIIV 79 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeec--CCCccHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 678999999999999999999999999999998 4899999965 779999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-cccCCCC---
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-VYAEGPA--- 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~y~~~~~--- 156 (465)
+|.||++..|++|+.||+.||+ .++.+||++.+|+|+++||.+|..+|++|.+ |+||||++|+. ++.++.+
T Consensus 80 aT~tpd~~~Ps~A~~vq~~LG~---~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~dR~t 154 (323)
T COG0332 80 ATSTPDHLFPSTACLVQARLGL---GGAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTDRDT 154 (323)
T ss_pred EcCCcccCCChHHHHHHHHhCC---CCcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhhccc
Confidence 9999999999999999999997 5699999999999999999999999999987 99999999998 4555544
Q ss_pred CcccccceeeeeecCCC-CcccccccccccccCcccccccCCC---------CCCcccCCchhHHHHHHHHHHHHHHHHH
Q 012353 157 RPTGGAAAVVMLVGPDA-PVAFESKLRGSHMSHAYDFYKPNLA---------SEYPVVDGKLSQTCYLMALDTCYKCLCS 226 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~-~~~~~~~~~~~~~~~~~df~~p~~~---------~~~p~~dg~~s~~~y~~~~~~~~~~~~~ 226 (465)
..+|||||+|+||++.+ ...+-....++.+....-.+.|... ..+..++|+..++.-.+.+.+++++.++
T Consensus 155 ~vlFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~~~~L~ 234 (323)
T COG0332 155 CVLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLE 234 (323)
T ss_pred eEEEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999986 3222111222222221112333221 1244689999888888888999988888
Q ss_pred HhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhh
Q 012353 227 KYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLA 306 (465)
Q Consensus 227 ~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~ 306 (465)
+. +++.+|||||++||+|.+|.+.+.++| ++|++ |++.++
T Consensus 235 ~~------~l~~~dId~~vpHQan~ri~~~i~~~l------------------------~~~~~---------k~~~~~- 274 (323)
T COG0332 235 KA------GLTPEDIDWFVPHQANLRIIEAIAKKL------------------------GIPEE---------KVVVTV- 274 (323)
T ss_pred Hc------CCCHHHCCEEccccccHHHHHHHHHHc------------------------CCCHH---------HHhhHH-
Confidence 76 799999999999999999999999998 66654 555677
Q ss_pred hhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 307 KPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 307 ~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
.++||+++||+|++|..++++ +++++||+|+|.+||+|++|++++++|.
T Consensus 275 ---------------~~yGNtsaAsiplaL~~~~~~-g~ik~Gd~ill~~fG~Gltwg~~~~r~~ 323 (323)
T COG0332 275 ---------------DKYGNTSAASIPLALDEALRE-GRIKPGDLVLLEAFGGGLTWGAALVRWG 323 (323)
T ss_pred ---------------HHhcccccchHHHHHHHHhhh-CCCCCCCEEEEEeecCcceeeeEEEEeC
Confidence 899999999999999999999 8999999999999999999999999984
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=415.89 Aligned_cols=334 Identities=25% Similarity=0.393 Sum_probs=272.9
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhhh--hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
+++|.+++.|+|+++|+++++++.++.+++++. +|+.+|+ +++++|+..+|+++|+++||+++|+++++||.|+++
T Consensus 1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~--v~~~~~~~~~la~~Aa~~aL~~agl~~~dID~li~~ 78 (345)
T TIGR00748 1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKA--VPGLDEDTATIGVEAARNALKRAKIDPKDIGAVYVG 78 (345)
T ss_pred CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeee--cCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 479999999999999999999999999999884 5666655 668899999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCC-CCCccc
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTG 160 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~-~~~~t~ 160 (465)
|+++++..|+.+..|++.||+ .+++.++|++++|+|++.||.+|..+|++|.. ++||||++|..+..+. ..+.++
T Consensus 79 s~~~~~~~p~~a~~v~~~LGl--~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~--~~vLVv~~d~~~~~~~~~~~~~~ 154 (345)
T TIGR00748 79 SESHPYAVKPTATIVAEAIGA--TPDLTAADLEFACKAGTAGIQACMGLVASGMI--KYGLAIGADTAQGAPGDALEYTA 154 (345)
T ss_pred ecCCCccccchHHHHHHHcCC--CCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeecccCCCccCcccC
Confidence 999998889999999999998 45788999999999999999999999999966 9999999999865332 235789
Q ss_pred ccceeeeeecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhH-HHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012353 161 GAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDTCYKCLCSKYEKLEGKQFSL 238 (465)
Q Consensus 161 GdGA~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (465)
||||+|+||++.+.. .+.. . ..+..+..|+|++. +..+|...+++.. ..+++.+..+++.++++. ++++
T Consensus 155 GDGAaA~vl~~~~~~~~~~~-~-~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~------gl~~ 225 (345)
T TIGR00748 155 GAGGAAYIIGEKNTVAYFEG-T-YSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKL------GLTP 225 (345)
T ss_pred CCceEEEEEccCCcceEeec-c-cceecccccccccC-CCcCCCcCCeecChHHHHHHHHHHHHHHHHHc------CCCH
Confidence 999999999987642 2221 1 12233445777764 2334444443322 235555556667776665 7999
Q ss_pred CCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCc
Q 012353 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPST 318 (465)
Q Consensus 239 ~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~ 318 (465)
+|||+|++|||+.+|++.+.++| |++.+++.. ++
T Consensus 226 ~did~~i~Hq~~~~~~~~~~~~l------------------------gl~~ek~~~----------------------~~ 259 (345)
T TIGR00748 226 EDFDYAVFHQPNGKFYLVAARML------------------------GFPKEQVKP----------------------GL 259 (345)
T ss_pred HHcCEEEeCCCChHHHHHHHHHc------------------------CCCHHHeec----------------------cc
Confidence 99999999999999999998888 777655431 11
Q ss_pred ccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHh-hccHHHHhccCCc
Q 012353 319 LIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILS-VMNVAGKLKSRHE 397 (465)
Q Consensus 319 ~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~R~~ 397 (465)
..+++||+++||+|++|.++++. +++|++|+|++||+|++|++++++|++ .++..++ +-++.+.|++|+.
T Consensus 260 -~~~~~GNt~sAsipl~L~~~~~~---~~~Gd~vll~~~G~G~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 330 (345)
T TIGR00748 260 -LTPRIGNTYSGATPVGLSAVLDI---AEPGDRILAVSYGSGAGSDAFSIVVQD-----AIEEKRDLAPKVADYIKRKKY 330 (345)
T ss_pred -cccccCchhhhHHHHHHHHHHHh---cCCCCEEEEEEecCCcceeEEEEEEch-----hHHHHhhhhhhHHHHHhcCcc
Confidence 12799999999999999999863 689999999999999999999999998 7877763 2379999999999
Q ss_pred CCHHHHHHHH
Q 012353 398 FPPENFVEVM 407 (465)
Q Consensus 398 l~~~ey~~~~ 407 (465)
+++++|+++.
T Consensus 331 ~~~~~y~~~~ 340 (345)
T TIGR00748 331 IDYALYAKFR 340 (345)
T ss_pred CCHHHHHHHh
Confidence 9999999874
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=415.68 Aligned_cols=335 Identities=24% Similarity=0.385 Sum_probs=276.4
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhhh--hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|+|+|.+++.|+|+.+|+++++++..+.+++|+. +|+.+|+ +++++++..+|+++|++++|+++|+++++||.|++
T Consensus 1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~--~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~ 78 (347)
T PRK04262 1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKS--VPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYV 78 (347)
T ss_pred CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeee--cCCCCcCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 6799999999999999999999999999999874 6777776 66889999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCC-CCCcc
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPT 159 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~-~~~~t 159 (465)
+|+++++..|+.+.+|++.||+ .+++.++|++++|+|++.||..|..+|++|.. ++||||++|...+... ..+.+
T Consensus 79 ~s~~~~~~~p~~a~~v~~~Lgl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~--~~aLVv~~e~~~~~~~~~~~~~ 154 (347)
T PRK04262 79 GSESHPYAVKPTATIVAEALGA--TPDLTAADLEFACKAGTAALQAAMGLVKSGMI--KYALAIGADTAQGAPGDALEYT 154 (347)
T ss_pred EecCCCcccccHHHHHHHHcCC--CCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeeeccCCCCCCCCc
Confidence 9999998889999999999998 45688999999999999999999999999955 9999999999644332 23467
Q ss_pred cccceeeeeecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhH-HHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012353 160 GGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDTCYKCLCSKYEKLEGKQFS 237 (465)
Q Consensus 160 ~GdGA~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~-~~y~~~~~~~~~~~~~~~~~~~~~~~~ 237 (465)
+||||+|+||++++.. .+.. ..++..+..|+|++. +..+|.....++. ..|++.++++++.++++. +++
T Consensus 155 ~GDGA~A~ll~~~~~~~~i~~--~~~~~~d~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~------gl~ 225 (347)
T PRK04262 155 AAAGGAAFIIGKEEVIAEIEA--TYSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAKGLMEKL------GLK 225 (347)
T ss_pred CCCCcEEEEEecCcccceeec--cccccccchhhcCCC-CCcCCCcCceecchHHHHHHHHHHHHHHHHHh------CcC
Confidence 8999999999986542 2211 112334556788754 2223433233322 256778888888888876 799
Q ss_pred CCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCC
Q 012353 238 LSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPS 317 (465)
Q Consensus 238 ~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s 317 (465)
++|||+|+|||++.+|++.+.++| +++.++.+. +
T Consensus 226 ~~dId~~v~Hq~n~~~~~~~~~~L------------------------gl~~ek~~~----------------------~ 259 (347)
T PRK04262 226 PSDYDYAVFHQPNGKFPLRVAKML------------------------GFTKEQVKP----------------------G 259 (347)
T ss_pred HHHhceeecCCCchHHHHHHHHHc------------------------CCCHHHhhc----------------------c
Confidence 999999999999999999999988 777665431 1
Q ss_pred cccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHH-hhccHHHHhccCC
Q 012353 318 TLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNIL-SVMNVAGKLKSRH 396 (465)
Q Consensus 318 ~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~R~ 396 (465)
. +.+++|||+|||+|++|.+++++ +++|++|+|++||+|+++++++++|++ .+++.+ ...++.+.|++|+
T Consensus 260 ~-~~~~~GNt~sAsi~~~L~~~~~~---~~~Gd~vll~~~G~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 330 (347)
T PRK04262 260 L-LTPYIGNTYSGSALLGLAAVLDV---AKPGDRILVVSFGSGAGSDAFSITVTD-----AIEEKRDLAPTVEDYLERKK 330 (347)
T ss_pred c-hhhhhCChHHHHHHHHHHHHHHh---CCCCCEEEEEecCCCcceeeEEEEech-----hHHHhhhccccHHHHHhCCc
Confidence 1 12899999999999999999874 579999999999999999999999998 676654 2347999999999
Q ss_pred cCCHHHHHHHH
Q 012353 397 EFPPENFVEVM 407 (465)
Q Consensus 397 ~l~~~ey~~~~ 407 (465)
.+++++|+++.
T Consensus 331 ~~~~~~y~~~~ 341 (347)
T PRK04262 331 YIDYAVYAKYR 341 (347)
T ss_pred cCCHHHHHHHh
Confidence 99999998763
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=357.05 Aligned_cols=174 Identities=54% Similarity=0.864 Sum_probs=152.7
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
+|++|||++|++|+|+++|++++|++++|++++||++||||.+|+|++++||+++||++|++++|++.+++|++|++|+|
T Consensus 1 ~p~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l~v 80 (174)
T PF01154_consen 1 RPQNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRYNIDPDDIGRLIV 80 (174)
T ss_dssp --SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHHT-HHHHEEEEEE
T ss_pred CCccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHcCCCHHHccEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCccc
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG 160 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~ 160 (465)
||||++|.+|+++++||++||+.++++|+++|+++||||||+||++|.+||+++.+||+++|||++|+++|..++.|+|+
T Consensus 81 gTES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA~y~~g~~e~Tq 160 (174)
T PF01154_consen 81 GTESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIARYDLGSAEPTQ 160 (174)
T ss_dssp E-SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE--STTTTGGG-
T ss_pred eccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccccCCCCccccc
Confidence 99999999999999999999997778899999999999999999999999999999999999999999999988889999
Q ss_pred ccceeeeeecCCCC
Q 012353 161 GAAAVVMLVGPDAP 174 (465)
Q Consensus 161 GdGA~A~Ll~~~~~ 174 (465)
|+|||||||++++|
T Consensus 161 GAGAVAmLi~~nap 174 (174)
T PF01154_consen 161 GAGAVAMLIGPNAP 174 (174)
T ss_dssp EEEEEEEEEECS-S
T ss_pred cceeEEEEecCCCC
Confidence 99999999999875
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=384.81 Aligned_cols=302 Identities=18% Similarity=0.188 Sum_probs=247.5
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhhh--hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
+++|.+++.|+|+.+|+++++++..|.+++++. +|+.+|+ +++++|++.+||++||+++|+++|+++++||+||++
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~--~~~~~e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~ 80 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRR--WAAPDETLSDLAASAGDMALSDAGIERSDIALTLLA 80 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEE--EcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 589999999999999999999999999888874 5666666 557899999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-CC---CCC
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EG---PAR 157 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~~---~~~ 157 (465)
|+++++..|+.+.+|+++||+ +++.+||++++|+|++.||++|.++|+++ . ++||||++|..+.. +. ...
T Consensus 81 t~~~d~~~p~~a~~v~~~Lg~---~~~~~~di~~~C~g~~~aL~~A~~~l~~~--~-~~aLVv~~d~~s~~~~~~~~~~~ 154 (326)
T PRK05963 81 TSTPDHLLPPSAPLLAHRLGL---QNSGAIDLAGACAGFLYALVLADGFVRAQ--G-KPVLVVAANILSRRINMAERASA 154 (326)
T ss_pred CCCCCCCCCcHHHHHHHHhCC---CCCceeeccchhhHHHHHHHHHHHHHHcC--C-CeEEEEEechhhccCCccccCce
Confidence 999988899999999999997 46789999999999999999999999987 3 89999999987432 21 234
Q ss_pred cccccceeeeeecCCCC--cccccccccccccCccccc-ccCCCCC-------------CcccCCchhHHHHHHHHHHHH
Q 012353 158 PTGGAAAVVMLVGPDAP--VAFESKLRGSHMSHAYDFY-KPNLASE-------------YPVVDGKLSQTCYLMALDTCY 221 (465)
Q Consensus 158 ~t~GdGA~A~Ll~~~~~--~~~~~~~~~~~~~~~~df~-~p~~~~~-------------~p~~dg~~s~~~y~~~~~~~~ 221 (465)
.+|||||+|+||++++. ..+......++.. .+|++ .|.++.. +...+|+..++.+.+.+.+++
T Consensus 155 ~lfGDgA~A~ll~~~~~~~~~~l~~~~~t~~~-~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (326)
T PRK05963 155 VLFADAAGAVVLAPSAKANSGVLGSQLISDGS-HYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGAS 233 (326)
T ss_pred EEEeecceEEEEEecCCCCCceEEEEEEEcCC-CCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHH
Confidence 67999999999998653 1111111112111 23332 2332211 122467777777788888888
Q ss_pred HHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHH
Q 012353 222 KCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301 (465)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~ 301 (465)
++++++. |++++|||+|++||++.+|++++.++| +++.++..
T Consensus 234 ~~~L~~~------gl~~~did~~~~h~~~~~~~~~~~~~l------------------------~l~~~k~~-------- 275 (326)
T PRK05963 234 QNVLASA------AMTPQDIDRFFPHQANARIVDKVCETI------------------------GIPRAKAA-------- 275 (326)
T ss_pred HHHHHHc------CCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CCCHHHhh--------
Confidence 8888776 799999999999999999999999888 77766432
Q ss_pred HHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 302 ~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
.++ +++||+++||+|++|..++++ +++++||+|+++++|+|+++++++++|
T Consensus 276 -~~l----------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~vll~~~G~G~~~~~~ll~~ 326 (326)
T PRK05963 276 -STL----------------ETYGNSSAATIPLSLSLANLE-QPLREGERLLFAAAGAGMTGGAVVMRV 326 (326)
T ss_pred -hhH----------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEehhhhheeeEEeC
Confidence 345 899999999999999999988 788899999999999999999999986
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=374.05 Aligned_cols=308 Identities=16% Similarity=0.215 Sum_probs=249.2
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRL 78 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~l 78 (465)
|+++++|.++++|+|+++++++|+++..+.+.+++ ++|+.+|++ +.++|+..+|+++|++++|+++|+++++||.|
T Consensus 1 ~~~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~--~~~~~~~~~la~~A~~~al~~ag~~~~~Id~l 78 (325)
T PRK12879 1 MMSYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRI--AHVEEYTSDLAIKAAERALARAGLDAEDIDLI 78 (325)
T ss_pred CCCCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEE--CCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 78999999999999999999999999988777766 478888875 47899999999999999999999999999999
Q ss_pred EEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC---
Q 012353 79 EVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG--- 154 (465)
Q Consensus 79 i~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~--- 154 (465)
|++|+++++..|+.+.+|++.||+ +++.+++++++|+|++.||.+|..+|++|.. ++||||++|.++. .+.
T Consensus 79 i~~~~~~~~~~~~~a~~l~~~lg~---~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~ 153 (325)
T PRK12879 79 IVATTTPDYLFPSTASQVQARLGI---PNAAAFDINAACAGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTDR 153 (325)
T ss_pred EEEcCCCCCCCChHHHHHHHHhCC---CCCcEEEECccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcccc
Confidence 999999888899999999999997 4578999999999999999999999999965 9999999998732 222
Q ss_pred CCCcccccceeeeeecCCCC-cccccccccccccCcccccccCCCCC----------CcccCCchhHHHHHHHHHHHHHH
Q 012353 155 PARPTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASE----------YPVVDGKLSQTCYLMALDTCYKC 223 (465)
Q Consensus 155 ~~~~t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~----------~p~~dg~~s~~~y~~~~~~~~~~ 223 (465)
....+|||||+|+||++++. ..+.....++..+....+++|..++. +..++|+..+...++.+.+++++
T Consensus 154 ~~~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (325)
T PRK12879 154 TTCILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQ 233 (325)
T ss_pred CceEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHH
Confidence 22357999999999998763 12111111222211122233322221 22345655555555667778888
Q ss_pred HHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHH
Q 012353 224 LCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQ 303 (465)
Q Consensus 224 ~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~ 303 (465)
++++. ++.++|||+|++||++.++++.+.++| +++.++.+ .
T Consensus 234 ~L~~~------g~~~~did~~~~h~~~~~~~~~~~~~l------------------------g~~~~~~~---------~ 274 (325)
T PRK12879 234 VLEKA------GLTKDDIDWVIPHQANLRIIESLCEKL------------------------GIPMEKTL---------V 274 (325)
T ss_pred HHHHc------CCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCHHHhh---------h
Confidence 87775 799999999999999999999998888 77766543 2
Q ss_pred hhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 304 QLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 304 ~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
++ +++||++++|+|++|.+++++ +.+++|++|+|++||+|+++++++++|+
T Consensus 275 ~~----------------~~~Gn~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~~~~~~l~~~~ 325 (325)
T PRK12879 275 SV----------------EYYGNTSAATIPLALDLALEQ-GKIKPGDTLLLYGFGAGLTWAALLVKWG 325 (325)
T ss_pred hH----------------hhhCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhEEEEEEeC
Confidence 34 899999999999999999998 7889999999999999999999999984
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=371.08 Aligned_cols=301 Identities=20% Similarity=0.217 Sum_probs=240.1
Q ss_pred ceeEEeEEEEecCCceechHHH-HHhcCCCh---hhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCcc
Q 012353 3 KNVGILAMDIYFPPTCVQQEAL-EAHDGASK---GKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIG 76 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l-~~~~g~~~---~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id 76 (465)
++++|.++++|+|+++|+++++ .+..+.+. .++ .+||.+|+++ .++|++.+||++|+++||+++|++++|||
T Consensus 6 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~~~e~~~~la~~Aa~~aL~~a~~~~~dId 83 (353)
T PRK12880 6 DKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYIC--DENTCVSDLGKHAANTLLQGLNIDKNSLD 83 (353)
T ss_pred cccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEeC--CCCCCHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 5689999999999999999975 44443221 233 3788888854 67999999999999999999999999999
Q ss_pred EEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC-
Q 012353 77 RLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG- 154 (465)
Q Consensus 77 ~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~- 154 (465)
+||++|+|+++..|+++.+|+++||+ .+++.+||+++||+|++.||++|..|+++|. .+ ||||++|.++. .+.
T Consensus 84 ~lI~~t~t~d~~~P~~a~~v~~~Lg~--~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~--~~-~LVv~~e~~S~~~~~~ 158 (353)
T PRK12880 84 ALIVVTQSPDFFMPSTACYLHQLLNL--SSKTIAFDLGQACAGYLYGLFVAHSLIQSGL--GK-ILLICGDTLSKFIHPK 158 (353)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHhCC--CCCceEEehhhhhHHHHHHHHHHHHHHHcCC--CC-EEEEEehhhhccCCcc
Confidence 99999999999999999999999998 5688999999999999999999999999994 48 99999998743 222
Q ss_pred --CCCcccccceeeeeecCCCCc-c-cccccccccccCcccccccCCCC----------------------CCcccCCch
Q 012353 155 --PARPTGGAAAVVMLVGPDAPV-A-FESKLRGSHMSHAYDFYKPNLAS----------------------EYPVVDGKL 208 (465)
Q Consensus 155 --~~~~t~GdGA~A~Ll~~~~~~-~-~~~~~~~~~~~~~~df~~p~~~~----------------------~~p~~dg~~ 208 (465)
...++|||||+|+||++++.- . +.....+.+. .....|.++. .+-.++|+.
T Consensus 159 d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~---~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 235 (353)
T PRK12880 159 NMNLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYF---DKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGAN 235 (353)
T ss_pred cCCceeeecccceEEEEEecCCCCceEEEEecCCCC---CeEEecCCCcCCCccccccccccccccccccCceEEEcCHH
Confidence 235789999999999875421 1 1111111111 1111221110 112467888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCC
Q 012353 209 SQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLS 288 (465)
Q Consensus 209 s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~ 288 (465)
.++.+++.++.++++++++. |++.+|||+|++||++.+|++.+.++| +++
T Consensus 236 v~~~~~~~~~~~i~~~L~~~------gl~~~did~~v~HQ~~~~i~~~i~~~L------------------------gl~ 285 (353)
T PRK12880 236 IFNMALECEPKSFKEILEFS------KVDEKDIAFHLFHQSNAYLVDCIKEEL------------------------KLN 285 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCC
Confidence 88888888888999888876 799999999999999999999999998 777
Q ss_pred CCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEE
Q 012353 289 GDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSL 368 (465)
Q Consensus 289 ~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~ 368 (465)
+++... ..+ +++||++++|+|++|..++++ +++ +++|+++|+|++|+++++
T Consensus 286 ~ek~~~--------~~l----------------~~~GNtssasip~~L~~~~~~-~~~----~~ll~~~G~G~s~g~~ll 336 (353)
T PRK12880 286 DDKVPN--------FIM----------------EKYANLSACSLPALLCELDTP-KEF----KASLSAFGAGLSWGSAVL 336 (353)
T ss_pred HHHhhh--------hhH----------------HhhCCHHHHHHHHHHHHHHHc-CCc----EEEEEEEchhhhheEeEE
Confidence 765320 123 899999999999999999886 443 599999999999999999
Q ss_pred EEeC
Q 012353 369 KLSE 372 (465)
Q Consensus 369 ~~~~ 372 (465)
+|.+
T Consensus 337 ~~~~ 340 (353)
T PRK12880 337 NFKD 340 (353)
T ss_pred EECC
Confidence 9976
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=366.48 Aligned_cols=306 Identities=15% Similarity=0.149 Sum_probs=246.6
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRL 78 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~l 78 (465)
|.++++|.++++|+|+++++++++++..+.+.+++ .+|+.+|+++ . +|+..+|+++|++++|+++|+++++||+|
T Consensus 1 ~~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~-~~~~~~la~~Aa~~aL~~ag~~~~dId~l 77 (329)
T PRK07204 1 MKRYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFV--D-GETSSYMGAEAAKKAVEDAKLTLDDIDCI 77 (329)
T ss_pred CCCCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEeec--C-CCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 77889999999999999999999999999887777 4677777754 4 89999999999999999999999999999
Q ss_pred EEEeecCCCCcccHHHHHHHHhcccCCC-CceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-CCC-
Q 012353 79 EVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGP- 155 (465)
Q Consensus 79 i~~T~s~~~~~ps~a~~l~~~LGl~g~~-~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~~~- 155 (465)
|++|+++.+..|+.+.+|++.||+ .. .+.++|++++|+|++.||.+|..++++|.. ++||||++|.++.. +..
T Consensus 78 i~~~~~~~~~~p~~a~~v~~~lgl--~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~ 153 (329)
T PRK07204 78 ICASGTIQQAIPCTASLIQEQLGL--QHSGIPCFDINSTCLSFITALDTISYAIECGRY--KRVLIISSEISSVGLNWGQ 153 (329)
T ss_pred EEECCCCCCCCccHHHHHHHHhCC--CCCCceEEEccchhHHHHHHHHHHHHHHHCCCC--CEEEEEEeccccCCCCccc
Confidence 999999988889999999999997 33 478999999999999999999999999965 99999999997432 222
Q ss_pred --CCcccccceeeeeecCCCC-cccccccccccccCcccc-cccCCC--------------CCCcccCCchhHHHHHHHH
Q 012353 156 --ARPTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDF-YKPNLA--------------SEYPVVDGKLSQTCYLMAL 217 (465)
Q Consensus 156 --~~~t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df-~~p~~~--------------~~~p~~dg~~s~~~y~~~~ 217 (465)
...+|||||+|+||++++. ..+......++... .++ ..|.++ ..+..++|+..++...+.+
T Consensus 154 ~~~~~lfGDGAaA~ll~~~~~~~~il~~~~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (329)
T PRK07204 154 NESCILFGDGAAAVVITKGDHSSRILASHMETYSSG-AHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYL 232 (329)
T ss_pred CcceEEEecccEEEEEEEcCCCCcEEEEEEEEecCC-CCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHH
Confidence 2356999999999998753 11111011111110 011 001100 0012346666666666778
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchh
Q 012353 218 DTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRD 297 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~ 297 (465)
++++++++++. |++++|||+|++||++.++++.+.++| ++|.++.
T Consensus 233 ~~~i~~~L~~~------gl~~~did~~~~H~~~~~~~~~i~~~l------------------------~l~~e~~----- 277 (329)
T PRK07204 233 MKFIDKLLMDA------GYTLADIDLIVPHQASGPAMRLIRKKL------------------------GVDEERF----- 277 (329)
T ss_pred HHHHHHHHHHc------CCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CCCHHHh-----
Confidence 88888888776 799999999999999999999998888 7776543
Q ss_pred HHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 298 LEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 298 ~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
+.++ +++||++++|+|++|.+++++ +++++|++|+|+++|+|+++++.+++|
T Consensus 278 ----~~~~----------------~~~Gn~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~ll~~ 329 (329)
T PRK07204 278 ----VTIF----------------EDHGNMIAASIPVALFEAIKQ-KKVQRGNKILLLGTSAGLSIGGILLEY 329 (329)
T ss_pred ----hhhH----------------hhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheeeEEeC
Confidence 2345 899999999999999999998 788999999999999999999999875
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=363.99 Aligned_cols=304 Identities=21% Similarity=0.267 Sum_probs=243.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|.|+|.++++|+|+++|+++|+++..+.+..++ ++|+.+|++ ..++++..+|+.+|++++|+++|++|++||.||+
T Consensus 1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~~--~~~~~~~~~la~~A~~~aL~~ag~~~~dId~vi~ 78 (326)
T CHL00203 1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHL--APSSTSLTKLAAEAANKALDKAHMDPLEIDLIIL 78 (326)
T ss_pred CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEEe--CCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 578999999999999999999999998766666 578888774 4789999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC---CC
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG---PA 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~---~~ 156 (465)
+|+++.+.. ..+.++++.||+ .++.+++++++|+|++.||.+|..+|++|.. +++|||++|..+. .+. ..
T Consensus 79 ~s~~~~~~~-~~~~~v~~~Lg~---~~~~~~~v~~~Casg~~al~~A~~~i~sg~~--~~~Lvv~~e~~s~~~~~~~~~~ 152 (326)
T CHL00203 79 ATSTPDDLF-GSASQLQAEIGA---TRAVAFDITAACSGFILALVTATQFIQNGSY--KNILVVGADTLSKWIDWSDRKT 152 (326)
T ss_pred EeCCCCCCC-chHHHHHHHhCC---CCCceeeecccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhhCcCCcccCCc
Confidence 998887654 557899999996 5678899999999999999999999999966 9999999999743 222 23
Q ss_pred CcccccceeeeeecCCCCcc---cccccccccccCcccc-ccc------------CCCCCCcccCCchhHHHHHHHHHHH
Q 012353 157 RPTGGAAAVVMLVGPDAPVA---FESKLRGSHMSHAYDF-YKP------------NLASEYPVVDGKLSQTCYLMALDTC 220 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~~---~~~~~~~~~~~~~~df-~~p------------~~~~~~p~~dg~~s~~~y~~~~~~~ 220 (465)
..+|||||+|+||++.+... +.....+.+.... .+ ..| .....+..++|+..+...++.++.+
T Consensus 153 ~~~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (326)
T CHL00203 153 CILFGDGAGAAIIGASYENSILGFKLCTDGKLNSHL-QLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAV 231 (326)
T ss_pred eEEEcceeeEEEEEEcCCCCeEEEEEEEcCCCcceE-EecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHH
Confidence 46799999999999865311 1111111111100 01 111 1011122356766666666677778
Q ss_pred HHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHH
Q 012353 221 YKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k 300 (465)
++.++++. |++++|||+|++||++.++++.+.++| ++|.++..
T Consensus 232 i~~~L~~~------g~~~~did~~~~hq~~~~~~~~~~~~l------------------------gl~~~k~~------- 274 (326)
T CHL00203 232 IIKCLNAL------NISIDEVDWFILHQANKRILEAIANRL------------------------SVPNSKMI------- 274 (326)
T ss_pred HHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCHHHhh-------
Confidence 88887775 799999999999999999999999888 78776543
Q ss_pred HHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 301 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
.++ +++||+++||+|++|.+++++ +++++|++|+|+++|+|+++++++++|+
T Consensus 275 --~~l----------------~~~Gn~~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~v~~~~ 326 (326)
T CHL00203 275 --TNL----------------EKYGNTSAASIPLALDEAIQN-NKIQPGQIIVLSGFGAGLTWGAIVLKWK 326 (326)
T ss_pred --hHH----------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhhhheEEEEEeC
Confidence 345 899999999999999999998 7889999999999999999999999985
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=365.03 Aligned_cols=306 Identities=20% Similarity=0.204 Sum_probs=246.8
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc-------CCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcC
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD-------GASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPK 73 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~-------g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~ 73 (465)
.+|+|.++++|+|+++++++++++.. +.+++++ .+|+.+|++ .+++++..+|+++|++++|+++|++++
T Consensus 4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~--~~~~~~~~~la~~Aa~~aL~~ag~~~~ 81 (338)
T PRK09258 4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRW--WPEGTQLSDGAIAAGRKALAEAGIDPS 81 (338)
T ss_pred cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEec--CCCCCCHHHHHHHHHHHHHHHcCCCHH
Confidence 46999999999999999999999863 3455656 368888875 477999999999999999999999999
Q ss_pred CccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-
Q 012353 74 QIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA- 152 (465)
Q Consensus 74 ~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~- 152 (465)
+||.|+++|+++++..|+++.+|++.||+ ..++.++|++++|+|++.||.+|..+|++|.. ++||||++|.++..
T Consensus 82 ~Id~li~~s~~~~~~~p~~a~~v~~~lgl--~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~--~~~Lvv~~e~~s~~~ 157 (338)
T PRK09258 82 DIGLLINTSVCRDYLEPATACRVHHNLGL--PKSCANFDVSNACLGFLNGMLDAANMIELGQI--DYALVVSGESAREIV 157 (338)
T ss_pred HCCEEEEEcCCCCCCCChHHHHHHHHcCC--CCCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEecccchhc
Confidence 99999999999988899999999999998 45788999999999999999999999999955 99999999987321
Q ss_pred ---------CCCC---------CcccccceeeeeecCCCCcccccccccccccCcccccccC-CCCCCcccCCchhHHHH
Q 012353 153 ---------EGPA---------RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPN-LASEYPVVDGKLSQTCY 213 (465)
Q Consensus 153 ---------~~~~---------~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~-~~~~~p~~dg~~s~~~y 213 (465)
+... ..+|||||+|+||++++...-...+.+..+....+++... ....+..++++..+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (338)
T PRK09258 158 EATIDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLLGGVTRAATEHHELCQGGRDGMRTDAVGLLKEG 237 (338)
T ss_pred cchhhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceeeeeeeecCCCcccccccCccceEEcHHHHHHHH
Confidence 1111 2469999999999986531000112222221111222110 01223456888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccc
Q 012353 214 LMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESY 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 293 (465)
++.+.+++++++++. |++++|||+|++||++.++++.+.++| +++.++.+
T Consensus 238 ~~~~~~~~~~~L~~~------g~~~~did~~i~H~~~~~~~~~~~~~l------------------------gl~~~k~~ 287 (338)
T PRK09258 238 VELAVDTWEAFLAQL------GWAVEQVDRVICHQVGAAHTRAILKAL------------------------GIDPEKVF 287 (338)
T ss_pred HHHHHHHHHHHHHHc------CCCHHHCCEEecCCCCHHHHHHHHHHh------------------------CCCHHHce
Confidence 888888888888776 799999999999999999999999888 77776543
Q ss_pred cchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 294 QSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 294 ~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
.++ +++|||+++|+|++|.+++++ +++++|++|+|++||+|+++++++++|
T Consensus 288 ---------~~~----------------~~~GN~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~~~~~ 338 (338)
T PRK09258 288 ---------TTF----------------PTLGNMGPASLPITLAMAAEE-GFLKPGDRVALLGIGSGLNCSMLEVKW 338 (338)
T ss_pred ---------ehH----------------hhhCCcHHhHHHHHHHHHHHh-CCCCCCCEEEEEEechhHhhHhHeeeC
Confidence 234 799999999999999999988 788999999999999999999999886
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=364.78 Aligned_cols=305 Identities=16% Similarity=0.197 Sum_probs=241.0
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEE
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE 79 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li 79 (465)
+++++|.+++.|+|+++++++++.+..+.+++++ ++||.+|++ +.++|+..+|+++|+++||+++|++++|||+||
T Consensus 45 ~~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~~--~~~~~~~~~La~~Aa~~aL~~agi~~~dId~li 122 (379)
T PLN02326 45 GSGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRV--LSGDETLTSLAVEAAKKALEMAGVDPEDVDLVL 122 (379)
T ss_pred cCCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEee--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 3679999999999999999999999988777776 578888774 468899999999999999999999999999999
Q ss_pred EEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-cccCCCC--
Q 012353 80 VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-VYAEGPA-- 156 (465)
Q Consensus 80 ~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~y~~~~~-- 156 (465)
++|+++++. ++.+.+|+++||+ .++.++|++++|+|++.||.+|..+|++|.. ++||||++|.. .+.++.+
T Consensus 123 ~~s~~~~~~-~~~a~~v~~~LG~---~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~--~~vLVv~~e~~s~~~~~~d~~ 196 (379)
T PLN02326 123 LCTSSPDDL-FGSAPQVQAALGC---TNALAFDLTAACSGFVLGLVTAARFIRGGGY--KNVLVIGADALSRYVDWTDRG 196 (379)
T ss_pred EEeCCCCcc-CcHHHHHHHHhCC---CCCceeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhcCCCCccccC
Confidence 999988775 4678899999997 4789999999999999999999999999955 99999999997 3433322
Q ss_pred -CcccccceeeeeecCCCCc--c---cccccccccccCc----ccc-----cccC-C-------CCCC--cccCCchhHH
Q 012353 157 -RPTGGAAAVVMLVGPDAPV--A---FESKLRGSHMSHA----YDF-----YKPN-L-------ASEY--PVVDGKLSQT 211 (465)
Q Consensus 157 -~~t~GdGA~A~Ll~~~~~~--~---~~~~~~~~~~~~~----~df-----~~p~-~-------~~~~--p~~dg~~s~~ 211 (465)
..+|||||+|+||++++.. . +.....+.+.... .+. ..|. . ...+ ..++|+..+.
T Consensus 197 ~~~lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 276 (379)
T PLN02326 197 TCILFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFK 276 (379)
T ss_pred ceEEEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHH
Confidence 3579999999999986421 1 1111111111100 000 0000 0 0001 2245655555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCc
Q 012353 212 CYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDE 291 (465)
Q Consensus 212 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 291 (465)
...+.++++++.++++. |++++|||+|++||++.++++.+.++| |+++++
T Consensus 277 ~~~~~~~~~i~~~L~~~------gl~~~dId~~v~Hq~n~~~~~~~~~~L------------------------gl~~ek 326 (379)
T PLN02326 277 FAVRCVPQVIESALQKA------GLTAESIDWLLLHQANQRIIDAVAQRL------------------------GIPPEK 326 (379)
T ss_pred HHHHHHHHHHHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCHHH
Confidence 55566777777777665 799999999999999999999998888 787765
Q ss_pred cccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 292 SYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 292 ~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
+. .++ +++||+++||+|++|.+++++ +++++||+|+|++||+|++|++.+++|
T Consensus 327 ~~---------~~l----------------~~~GNt~sAsi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~ll~~ 379 (379)
T PLN02326 327 VI---------SNL----------------ANYGNTSAASIPLALDEAVRS-GKVKKGDVIATAGFGAGLTWGSAIVRW 379 (379)
T ss_pred ee---------ecH----------------hhcCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEChhheeeEEEEEC
Confidence 43 234 799999999999999999998 788999999999999999999999986
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=357.60 Aligned_cols=308 Identities=18% Similarity=0.138 Sum_probs=239.4
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRL 78 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~l 78 (465)
|||+|+|.++++|+|+..|+++++++..|.+.+++ ++|+.+|+ ++.++|+..+|+++|++++|+++|++|++||.|
T Consensus 1 ~~~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~--~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~l 78 (339)
T PRK06840 1 MEMNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKP--VPGPEDHTSDMAIAAAKPALKQAGVDPAAIDVV 78 (339)
T ss_pred CCCceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEe--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 89999999999999999999999999999888877 36777776 557889999999999999999999999999999
Q ss_pred EEEee-cCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHc-CCCCCCEEEEEEecccc-cc---
Q 012353 79 EVGSE-TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVES-SSWDGRYGLVVCTDSAV-YA--- 152 (465)
Q Consensus 79 i~~T~-s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~s-g~~~~~~aLVVasD~~~-y~--- 152 (465)
|++++ ++++..|+.+.+|++.||+ +++.++++.++|+|++.||.+|..+|++ +.. +++|||++|..+ ..
T Consensus 79 i~~~~~~~~~~~p~~a~~l~~~lGl---~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~--~~~Lvv~~~~~s~~~~~~ 153 (339)
T PRK06840 79 IYIGSEHKDYPVWSSAPKIQHEIGA---KNAWAFDIMAVCASFPIALKVAKDLLYSDPSI--ENVLLVGGYRNSDLVDYD 153 (339)
T ss_pred EEeccCCCCCCCCchHHHHHHHhCC---CCcccccccccchHHHHHHHHHHHHHhcCCCc--cEEEEEeecccccccCcC
Confidence 97765 4566689999999999997 5688999999999999999999999999 755 899999999863 21
Q ss_pred CCCCC--cccccceeeeeecCCCC-cccccccccccccCcccccccCCCCCCcc-------------cCCchhHHHHH--
Q 012353 153 EGPAR--PTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPV-------------VDGKLSQTCYL-- 214 (465)
Q Consensus 153 ~~~~~--~t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~p~-------------~dg~~s~~~y~-- 214 (465)
+.... .+|||||+|+||++++. ..+......+.......+..|.++...|. +.+...+...+
T Consensus 154 ~~~~~~~~~~GDgAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (339)
T PRK06840 154 NPRTRFMFNFAAGGSAALLKKDAGKNRILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDE 233 (339)
T ss_pred CCCeeeeccCCCceeEEEEEecCCCCceEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHh
Confidence 11222 34799999999998764 22211111111111122333333222221 12222232222
Q ss_pred ---HHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCc
Q 012353 215 ---MALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDE 291 (465)
Q Consensus 215 ---~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 291 (465)
..+.+++++++++. |++++|||++++||++.++++.+.++| +++.++
T Consensus 234 ~~~~~~~~~i~~~L~~~------gl~~~did~~~~h~~~~~~~~~~~~~L------------------------gl~~~~ 283 (339)
T PRK06840 234 VSIPNFLKVIREALRKS------GYTPKDIDYLAILHMKRSAHIALLEGL------------------------GLTEEQ 283 (339)
T ss_pred hHHHHHHHHHHHHHHHc------CCCHHHCCEEEECCcCHHHHHHHHHHc------------------------CCCHHH
Confidence 23456666666665 899999999999999999999988888 777654
Q ss_pred cccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 292 SYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 292 ~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
.+ .+ +++||++++|++++|.+++++ +++++|++|+|+++|+|+++++++++|.
T Consensus 284 ~~----------~~----------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~ill~~~G~G~s~~~~~l~~~ 336 (339)
T PRK06840 284 AI----------YL----------------DEYGHLGQLDQILSLHLALEQ-GKLKDGDLVVLVSAGTGYTWAATVIRWG 336 (339)
T ss_pred eE----------eH----------------HhccchhhhhHHHHHHHHHHc-CCCCCCCEEEEEEEehhhheeEEEEEec
Confidence 32 12 799999999999999999987 7788999999999999999999999997
Q ss_pred C
Q 012353 372 E 372 (465)
Q Consensus 372 ~ 372 (465)
+
T Consensus 337 ~ 337 (339)
T PRK06840 337 P 337 (339)
T ss_pred C
Confidence 5
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=352.65 Aligned_cols=305 Identities=19% Similarity=0.233 Sum_probs=247.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|.++|.++++|+|+++++++++++..+.+..++ +.|+.+|+ ++.+++++.+|+.+|++++|+++|+++++||.|++
T Consensus 1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~al~~agl~~~~Id~~i~ 78 (318)
T TIGR00747 1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERR--IAADDETSSTMGFEAAKRAIENAGISKDDIDLIIV 78 (318)
T ss_pred CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 569999999999999999999999988776655 36777776 55789999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-ccCCC---C
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-YAEGP---A 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-y~~~~---~ 156 (465)
+++++.+..|+.+.+|++.||+ +++++++++++|++++.||+.|..+|++|.. +++|||++|... ..+.. .
T Consensus 79 ~~~~~~~~~~~~a~~l~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~~Lvv~~e~~~~~~~~~~~~~ 153 (318)
T TIGR00747 79 ATTTPDHAFPSAACMVQAYLGI---KGIPAFDLSAACAGFIYALSVAKQYIESGKY--KTVLVVGAEKLSSTLDWTDRGT 153 (318)
T ss_pred ECCCCCCCCChHHHHHHHHhCC---CCCcEeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcCCCCe
Confidence 9999888789999999999997 4578999999999999999999999999966 999999999873 22221 2
Q ss_pred CcccccceeeeeecCCCC-cccccccccccccCcccccccCC------CCCCcccCCchhHHHHHHHHHHHHHHHHHHhh
Q 012353 157 RPTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNL------ASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE 229 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~------~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~ 229 (465)
..+|||||+|+||++++. ..+......+.......++.|.. ...+..+++...++.+++.+.+++++++++.
T Consensus 154 ~~~~GDGAaA~lL~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 232 (318)
T TIGR00747 154 CVLFGDGAGAVVLGESEDPGGIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEAN- 232 (318)
T ss_pred EEEEecceeEEEEeecCCCCcEEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 357999999999998763 21111011111111111223321 1223345677677777888888888888776
Q ss_pred hhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhh
Q 012353 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPL 309 (465)
Q Consensus 230 ~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~ 309 (465)
++.++||++|++|+++.++++++.+.| |++.++.+ .++
T Consensus 233 -----g~~~~di~~~~~h~~~~~~~~~~~~~l------------------------gi~~~k~~---------~~~---- 270 (318)
T TIGR00747 233 -----GLDPEDIDWFVPHQANLRIIEALAKRL------------------------ELDMSQVV---------KTV---- 270 (318)
T ss_pred -----CCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCHHHee---------ehH----
Confidence 789999999999999999999999888 78877654 234
Q ss_pred hhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 310 YDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 310 ~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
+++||++++|+|++|++++++ +.+.+||+|++++||+|+++++++++|
T Consensus 271 ------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~vll~~~G~G~t~~~~~l~~ 318 (318)
T TIGR00747 271 ------------HKYGNTSAASIPLALDELLRT-GRIKPGDLLLLVAFGGGLTWGAALVRF 318 (318)
T ss_pred ------------hhhCCHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeeEEEEEC
Confidence 789999999999999999998 788999999999999999999999986
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=351.80 Aligned_cols=301 Identities=21% Similarity=0.226 Sum_probs=244.5
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
+++|.++++|+|+++++++++.+..+.+.+++ ..|+.+|+ ++.++++..+|+++|++++|+++|+++++||.||++
T Consensus 1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~--~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~ 78 (320)
T cd00830 1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERR--IADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVA 78 (320)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEe--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 58999999999999999999999998887776 46777777 447789999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cC---CCCC
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AE---GPAR 157 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~---~~~~ 157 (465)
|+++.+..|+.+.+|++.||+ +++.+++++++|++++.||.+|..+|++|.. ++||||++|..+. .+ ....
T Consensus 79 ~~~~~~~~~~~~~~l~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~~ 153 (320)
T cd00830 79 TSTPDYLFPATACLVQARLGA---KNAAAFDINAACSGFLYGLSTAAGLIRSGGA--KNVLVVGAETLSRILDWTDRSTA 153 (320)
T ss_pred cCCCCCCCCcHHHHHHHHhCC---CCCcEeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCce
Confidence 999888789999999999997 4788999999999999999999999999955 9999999999742 22 2234
Q ss_pred cccccceeeeeecCCCC-cccccccccccccCcccccccCCCC-----------CCcccCCchhHHHHHHHHHHHHHHHH
Q 012353 158 PTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLAS-----------EYPVVDGKLSQTCYLMALDTCYKCLC 225 (465)
Q Consensus 158 ~t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~-----------~~p~~dg~~s~~~y~~~~~~~~~~~~ 225 (465)
.+|||||+|+||++++. ..+......+.......+..|.++. .+..++++..+..+.+.+.++++.++
T Consensus 154 ~~~GDgAaA~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 233 (320)
T cd00830 154 VLFGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEAL 233 (320)
T ss_pred EEEeccceEEEEEecCCCCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHHH
Confidence 78999999999998764 2211111112111111111122111 12335677777777788888888888
Q ss_pred HHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhh
Q 012353 226 SKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQL 305 (465)
Q Consensus 226 ~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~ 305 (465)
++. ++.++|||+|++||++.++++++.++| +++.++.+ .++
T Consensus 234 ~~~------g~~~~di~~~~~h~~~~~~~~~~~~~l------------------------gl~~~~~~---------~~~ 274 (320)
T cd00830 234 EKA------GLTPDDIDWFVPHQANLRIIEAVAKRL------------------------GLPEEKVV---------VNL 274 (320)
T ss_pred HHc------CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCHHHhh---------hhH
Confidence 876 799999999999999999999998888 77766432 344
Q ss_pred hhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeE
Q 012353 306 AKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFS 367 (465)
Q Consensus 306 ~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~ 367 (465)
+++||++++|+|++|.+++++ +++++|++|+|+++|+|+++++++
T Consensus 275 ----------------~~~Gn~~sas~~~~L~~~~~~-~~~~~G~~vll~~~G~G~~~~~~l 319 (320)
T cd00830 275 ----------------DRYGNTSAASIPLALDEAIEE-GKLKKGDLVLLLGFGAGLTWGAAL 319 (320)
T ss_pred ----------------HhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchHHhhHHhh
Confidence 799999999999999999998 788899999999999999998765
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=344.53 Aligned_cols=306 Identities=20% Similarity=0.221 Sum_probs=248.3
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
+.|+|.++++|+|+++++++++.+..+.+..++ +.|+.+|++ +.++++..+|+.+|++++|+++|+++++||.|++
T Consensus 2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~--~~~~~~~~~la~~A~~~al~~agl~~~~id~vi~ 79 (319)
T PRK09352 2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRI--AAPDETTSDLATEAAKKALEAAGIDPEDIDLIIV 79 (319)
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEEe--CCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 579999999999999999999999988777666 467777764 4688999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-CCC---C
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGP---A 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~~~---~ 156 (465)
+|+++....|+.+.+|+..||+ .++.+++++++|++++.||..|..+|++|.. ++||||++|..+.. +.. .
T Consensus 80 ~~~~~~~~~~~~~~~i~~~lG~---~~~~~~~v~~~Casg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~ 154 (319)
T PRK09352 80 ATTTPDYAFPSTACLVQARLGA---KNAAAFDLSAACSGFVYALSTADQFIRSGAY--KNVLVIGAEKLSRIVDWTDRST 154 (319)
T ss_pred EcCCCCCCCchHHHHHHHHhCC---CCCcEeeccccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCc
Confidence 9999887788999999999997 5678899999999999999999999999965 99999999987431 211 2
Q ss_pred CcccccceeeeeecCCCCcccccccccccccCcccccccCCCCC------CcccCCchhHHHHHHHHHHHHHHHHHHhhh
Q 012353 157 RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASE------YPVVDGKLSQTCYLMALDTCYKCLCSKYEK 230 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~------~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~ 230 (465)
..+|||||+|+||++++...+......+.......+..|..... +..++|+..++.+.+.+.+++++++++.
T Consensus 155 ~~~~gDGaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-- 232 (319)
T PRK09352 155 CVLFGDGAGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAA-- 232 (319)
T ss_pred eEEEeccceEEEEEEcCCCCeEEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 34799999999999875311110011111111112233543322 2235677667777788888888888876
Q ss_pred hhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhh
Q 012353 231 LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLY 310 (465)
Q Consensus 231 ~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~ 310 (465)
+++++|||+|++|+++.++++.+.+.| ++|.++.. .++
T Consensus 233 ----g~~~~di~~~~~h~~~~~~~~~~~~~l------------------------g~~~~~~~---------~~~----- 270 (319)
T PRK09352 233 ----GLTPEDIDWLVPHQANLRIIDATAKKL------------------------GLPMEKVV---------VTV----- 270 (319)
T ss_pred ----CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCHHHhh---------hhH-----
Confidence 799999999999999999999998888 77766432 234
Q ss_pred hhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 311 DAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 311 ~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
.++||++++|++++|.+++++ +.+.+|++|+++|||+|+++++++++|+
T Consensus 271 -----------~~~Gn~~~a~~~~~L~~~~~~-g~~~~Gd~vll~s~G~G~~~~~~ll~~~ 319 (319)
T PRK09352 271 -----------DKYGNTSAASIPLALDEAVRD-GRIKRGDLVLLEGFGGGLTWGAALVRWP 319 (319)
T ss_pred -----------HhhCCHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEeC
Confidence 799999999999999999998 7788999999999999999999999984
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=351.43 Aligned_cols=312 Identities=19% Similarity=0.179 Sum_probs=235.1
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCCh-------hhh--hhhhcCeEEecCCC---CCCHHHHHHHHHHHHHHHCCC
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASK-------GKY--TIGLGQECMAFCSE---VEDVISMSLTAVTNLLEKYKI 70 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~-------~k~--~~Gig~r~~av~~~---~Ed~~~la~~Aa~~aL~~agi 70 (465)
|+|+|.++++|+|+++|+++++++..+..+ .++ .+||.+|+++.++. .++..+|+++|++++|+++|+
T Consensus 1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~agi 80 (378)
T PRK06816 1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDAGF 80 (378)
T ss_pred CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 679999999999999999999998876421 244 47999999875432 358899999999999999999
Q ss_pred CcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc
Q 012353 71 DPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 71 ~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
++++||.||++|++++...|+.+.+|++.||+ +++.+++++++|+|++.||.+|..+|++|.. ++||||++|.++
T Consensus 81 ~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl---~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~--~~vLvv~~E~~s 155 (378)
T PRK06816 81 SLGDIELLACGTSQPDQLMPGHASMVHGELGA---PPIEVVSSAGVCAAGMMALKYAYLSVKAGES--RNAVATASELAS 155 (378)
T ss_pred CHHHCCEEEEEECCCCcCChHHHHHHHhhCCC---CCCceeeecCcCHHHHHHHHHHHHHHHCCCC--CEEEEEeEccch
Confidence 99999999999999887789999999999997 4578999999999999999999999999965 999999999973
Q ss_pred c-cC----------------CCC--------CcccccceeeeeecCCCCc-c--c--ccccccccccCcc----------
Q 012353 151 Y-AE----------------GPA--------RPTGGAAAVVMLVGPDAPV-A--F--ESKLRGSHMSHAY---------- 190 (465)
Q Consensus 151 y-~~----------------~~~--------~~t~GdGA~A~Ll~~~~~~-~--~--~~~~~~~~~~~~~---------- 190 (465)
. .+ .+. ..+|||||+|+||++.+.- . + .....+++..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~vl~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (378)
T PRK06816 156 RWFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGELPVCMYAGAEKN 235 (378)
T ss_pred hhhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEEEEecCCCCCceEEEEEEeeecccccCccceecCCccC
Confidence 2 11 111 1268999999999976531 1 1 1111122211110
Q ss_pred -----cccccCCCCCCcccCCchhH--------HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 191 -----DFYKPNLASEYPVVDGKLSQ--------TCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 191 -----df~~p~~~~~~p~~dg~~s~--------~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
..|++.. .+.+..+|+..+ +.+...+.++++.++++. |++++|||+|++||++.+|++++
T Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~------gl~~~DId~~v~Hq~n~~~~~~v 308 (378)
T PRK06816 236 EDGSLKGWSDYP-PEEAEAASALSLKQDVRLLNENIVVYTIKPLLELVDKR------NLDPDDIDYFLPHYSSEYFREKI 308 (378)
T ss_pred CCCCccCcccCC-HHHHHhccCchHHhHHHHHHHHhHHHHHHHHHHHHHHc------CCChhhCCEEeeCcccHHHHHHH
Confidence 1121100 011112333333 333334455555555554 89999999999999999999999
Q ss_pred HHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHH
Q 012353 258 FARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALA 337 (465)
Q Consensus 258 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~ 337 (465)
.++|--.+ .|+|+++.+. ++ .++||+++||+|++|.
T Consensus 309 ~~~l~~~~-------------------~gl~~~k~~~---------~~----------------~~~GNt~sAsipi~L~ 344 (378)
T PRK06816 309 VELLAKAG-------------------FMIPEEKWFT---------NL----------------ATVGNTGSASIYIMLD 344 (378)
T ss_pred HHHHHhcc-------------------CCCChhheEE---------ec----------------cccccccchHHHHHHH
Confidence 98871000 1677776552 44 7999999999999999
Q ss_pred HHHHhcCCCCCCCEEEEEEeccc-hheeeeEEEEe
Q 012353 338 SLIHNKHSELDGKRVVLFSYGSG-LTATMFSLKLS 371 (465)
Q Consensus 338 ~ll~~~~~~~~G~rill~syGsG-~~~~~~~~~~~ 371 (465)
+++++ +++++||+|+++++||| ++.++++++|+
T Consensus 345 ~a~~~-g~~~~Gd~vl~~~~~s~~~~~~~~~~~~~ 378 (378)
T PRK06816 345 ELLNS-GRLKPGQKILCFVPESGRFSTAFMLLTVV 378 (378)
T ss_pred HHHHc-CCCCCCCEEEEEEecccchhheeEEEEEC
Confidence 99998 88999999999999986 99999999984
|
|
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=350.95 Aligned_cols=309 Identities=17% Similarity=0.188 Sum_probs=236.2
Q ss_pred CceeEEeEEEEecCCceechHHHHHhc----CCChh-------hh--hhhhcCeEEecCCC-------------------
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHD----GASKG-------KY--TIGLGQECMAFCSE------------------- 49 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~----g~~~~-------k~--~~Gig~r~~av~~~------------------- 49 (465)
|.++.|.+|++|+|++.++|+++.+.. +.+.. ++ ++||.+|+++.+.+
T Consensus 19 ~~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r 98 (391)
T PLN03169 19 PGKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQR 98 (391)
T ss_pred CCCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHHH
Confidence 567999999999999999999998852 21222 12 37999999875321
Q ss_pred ----CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHHHH
Q 012353 50 ----VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAAL 124 (465)
Q Consensus 50 ----~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~AL 124 (465)
+|.+.+||++|+++||+++|+++++||+||++|++ ++..|+++.+|+++||+ .+.+ +++|+++||+|+++||
T Consensus 99 ~~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl--~~~~~~~~d~~~gC~g~~~aL 175 (391)
T PLN03169 99 LDIANEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGL--SPDVQRVMLYFLGCSGGVAGL 175 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCc--CCcceeeecccChhHHHHHHH
Confidence 56789999999999999999999999999999986 67799999999999998 5555 5899999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEEEeccccc--cC-----C---CCCcccccceeeeeecCCCCcccccccccccccCcccccc
Q 012353 125 FNCVNWVESSSWDGRYGLVVCTDSAVY--AE-----G---PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYK 194 (465)
Q Consensus 125 ~~A~~~l~sg~~~~~~aLVVasD~~~y--~~-----~---~~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~ 194 (465)
.+|.+|++++. .++||||++|.++. .. . ....+|||||+|+||++++....+......+... .+ +.
T Consensus 176 ~~A~~~~~~~~--~~~vLvv~~e~~s~~~~~~~~~~~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~l~~~~-~~-~i 251 (391)
T PLN03169 176 RVAKDIAENNP--GSRVLLTTSETTILGFRPPSPDRPYDLVGAALFGDGAAAVIIGADPIPVSESPFFELHTAI-QQ-FL 251 (391)
T ss_pred HHHHHHHHhCC--CCeEEEEEEEcChhhccCCCccchhhhhhhhhccCceEEEEEecCCCcccCCcceEEEeee-ee-Ec
Confidence 99999999994 49999999999743 11 1 1246899999999999865310000000000000 01 11
Q ss_pred cCCC---------CCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc--eeeccCCchHHHHHHHHHhhh
Q 012353 195 PNLA---------SEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD--YFVFHSPYNKLVQKSFARLLF 263 (465)
Q Consensus 195 p~~~---------~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did--~~~~H~p~~km~~~~~~~L~~ 263 (465)
|... ..+..+.|+...+...+.++.++++++++. |++++|+| +|++||++.+|++.+.++|
T Consensus 252 p~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L~~~------gl~~~did~~~~v~Hq~n~~il~~v~~~L-- 323 (391)
T PLN03169 252 PGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLMKKA------GLVEKDYNDLFWAVHPGGPAILNRLEKKL-- 323 (391)
T ss_pred CCCccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHHHHc------CCCCCCCCcceEEecCCCHHHHHHHHHHc--
Confidence 2110 012234567666666678888888888775 78888899 9999999999999999988
Q ss_pred hhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhc
Q 012353 264 NDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNK 343 (465)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~ 343 (465)
+++.++... ...++ +++|||+++|+|+.|..++++
T Consensus 324 ----------------------gl~~ek~~~------s~~~l----------------~~~GNtsSasip~~L~~~~~~- 358 (391)
T PLN03169 324 ----------------------KLAPEKLEC------SRRAL----------------MDYGNVSSNTIVYVLEYMREE- 358 (391)
T ss_pred ----------------------CCCHHHHHH------HHHHH----------------HHhCCchHhHHHHHHHHHHHh-
Confidence 777664320 00234 899999999999999999876
Q ss_pred CCCC---CCCEEEEEEeccchheeeeEEEE
Q 012353 344 HSEL---DGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 344 ~~~~---~G~rill~syGsG~~~~~~~~~~ 370 (465)
++++ +|++++|++||+|+++++.+++|
T Consensus 359 ~~~~~~~~gd~~ll~afG~G~s~~~~ll~~ 388 (391)
T PLN03169 359 LKKKGEEDEEWGLILAFGPGITFEGILARN 388 (391)
T ss_pred hcccCCCCCcEEEEEEEcccHhHHHHHHhh
Confidence 5544 68999999999999999999886
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=350.67 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=233.5
Q ss_pred eEEeEEEEecCCceechHHHHHhcCC--Ch----------hhh--hhhhcCeEEecCC-CC-------------------
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDGA--SK----------GKY--TIGLGQECMAFCS-EV------------------- 50 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g~--~~----------~k~--~~Gig~r~~av~~-~~------------------- 50 (465)
+.|.++++|+|++.|+|+++.+..+. +. .++ ++||.+|+++.+. ++
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIA 81 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhhH
Confidence 68999999999999999999998652 21 333 4899999988642 11
Q ss_pred -CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHH
Q 012353 51 -EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCV 128 (465)
Q Consensus 51 -Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~ 128 (465)
|++.+|+++|++++|+++|+++++||+||++|+++ +..|+++.+|+++||+ .+++.+||++ +||+|++.||++|.
T Consensus 82 ~~~~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~-~~~P~~a~~i~~~lgl--~~~~~~~dv~~~~C~~~~~al~~A~ 158 (361)
T cd00831 82 LEEARELAEEAARGALDEAGLRPSDIDHLVVNTSTG-NPTPSLDAMLINRLGL--RPDVKRYNLGGMGCSAGAIALDLAK 158 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCC-CCCCCHHHHHHHHhCC--CcccchhccccccchhHHHHHHHHH
Confidence 36899999999999999999999999999999887 6699999999999998 5579999998 89999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccccc--cCCC------CCcccccceeeeeecCCCCccc----ccccccccccCcccc----
Q 012353 129 NWVESSSWDGRYGLVVCTDSAVY--AEGP------ARPTGGAAAVVMLVGPDAPVAF----ESKLRGSHMSHAYDF---- 192 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~y--~~~~------~~~t~GdGA~A~Ll~~~~~~~~----~~~~~~~~~~~~~df---- 192 (465)
++++++. .++||||++|..+. .... ...+|||||+|+||++++.... .....++++....+.
T Consensus 159 ~~~~~~~--~~~aLvv~~e~~s~~~~~~d~~~~~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 236 (361)
T cd00831 159 DLLEANP--GARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAM 236 (361)
T ss_pred HHHHHCC--CCEEEEEEeecccceeCCCCcHHHhhhhhhccCCceEEEEEcCCCcccccccceeeecccceeeecCCCce
Confidence 9999995 49999999999743 1111 2467999999999998764210 001222222111110
Q ss_pred -cccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhccccc
Q 012353 193 -YKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAS 271 (465)
Q Consensus 193 -~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~ 271 (465)
|++.. ..+....++.....+.+.+.++++.++++.+ .+++.+|||+|++||++.++++.+.++|
T Consensus 237 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~i~~~L~~~~----~g~~~~did~~~~H~~~~~i~~~v~~~l---------- 301 (361)
T cd00831 237 GWHLGE-EGLTFVLSRDVPRLVEKNLERVLRKLLARLG----IGLFKLAFDHWCVHPGGRAVLDAVEKAL---------- 301 (361)
T ss_pred EEEEEc-ceEEEEeChhHHHHHHHHHHHHHHHHhcccc----CCCccccceEEEECCCChHHHHHHHHHc----------
Confidence 11110 1111223333445555667777776665530 1688899999999999999999998887
Q ss_pred chhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCE
Q 012353 272 SVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKR 351 (465)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~r 351 (465)
+++.++.. +|+.+.+++|||++||+|++|.+++++ +++++|++
T Consensus 302 --------------gl~~~~~~----------------------~s~~~l~~~GN~~sasi~~~L~~~~~~-g~~~~Gd~ 344 (361)
T cd00831 302 --------------GLSPEDLE----------------------ASRMVLRRYGNMSSSSVLYVLAYMEAK-GRVKRGDR 344 (361)
T ss_pred --------------CCCHHHHH----------------------HHHHHHHHhCCchhccHHHHHHHHHHh-CCCCCCCE
Confidence 77765431 122223899999999999999999998 78889999
Q ss_pred EEEEEeccchheeeeEE
Q 012353 352 VVLFSYGSGLTATMFSL 368 (465)
Q Consensus 352 ill~syGsG~~~~~~~~ 368 (465)
|+|++||+|++++++++
T Consensus 345 vll~~~G~G~s~~~~l~ 361 (361)
T cd00831 345 GLLIAFGPGFTCESAVW 361 (361)
T ss_pred EEEEEEcCCceeeeeeC
Confidence 99999999999998764
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=326.57 Aligned_cols=304 Identities=37% Similarity=0.514 Sum_probs=234.3
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEee
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~ 83 (465)
.|+|.++++|+|+++|+++++++.++.+.-...+|+.+|+++ .++++..+|+++|++++|+++|+++++||.|+++++
T Consensus 1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~--~~~~~~~~l~~~a~~~aL~~ag~~~~~Id~li~~~~ 78 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMA--GDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATE 78 (324)
T ss_pred CccEEEEEecCCceeecHHHHHHHhCCCcceeeeecceeEec--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 479999999999999999999999887632335799999866 458999999999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc---CCCCCccc
Q 012353 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA---EGPARPTG 160 (465)
Q Consensus 84 s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~---~~~~~~t~ 160 (465)
++....|+.+.+|++.||+ +++.++++.++|++++.||.+|..+|++|.. ++||||++|..... ......+|
T Consensus 79 ~~~~~~~~~~~~i~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlvv~~e~~~~~~~~~~~~~~~~ 153 (324)
T cd00827 79 SPIDKGKSAATYLAELLGL---TNAEAFDLKQACYGGTAALQLAANLVESGPW--RYALVVASDIASYLLDEGSALEPTL 153 (324)
T ss_pred CCCCCCccHHHHHHHHcCC---CCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEEHHhhhcccCCCCccccc
Confidence 9887788999999999997 4789999999999999999999999999965 99999999998542 23456889
Q ss_pred ccceeeeeecCCCC---cccccccccccccC------cccccccCC----CCCCcccCC--chhHHHHHHHHHHHHHHHH
Q 012353 161 GAAAVVMLVGPDAP---VAFESKLRGSHMSH------AYDFYKPNL----ASEYPVVDG--KLSQTCYLMALDTCYKCLC 225 (465)
Q Consensus 161 GdGA~A~Ll~~~~~---~~~~~~~~~~~~~~------~~df~~p~~----~~~~p~~dg--~~s~~~y~~~~~~~~~~~~ 225 (465)
||||+|+||++++. ..+......+.... ..++..+.+ .......++ ......+.+.+.++++..+
T Consensus 154 gdgaaA~ll~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (324)
T cd00827 154 GDGAAAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKAL 233 (324)
T ss_pred cCceEEEEEecCcccccCCceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHHHHH
Confidence 99999999998864 22221111111111 111111100 000011233 2233445566677777766
Q ss_pred HHhhhhhcCCCCCCCCceeeccCCch-HHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHh
Q 012353 226 SKYEKLEGKQFSLSNADYFVFHSPYN-KLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQ 304 (465)
Q Consensus 226 ~~~~~~~~~~~~~~did~~~~H~p~~-km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~ 304 (465)
++. +++ +||++|++||++. ++++.+.++| +++.++...++. .+
T Consensus 234 ~~~------~~~-~~i~~~~~h~~~~~~~~~~~~~~l------------------------~~~~~~~~~~~~-----~~ 277 (324)
T cd00827 234 DRA------GLS-EDIDYFVPHQPNGKKILEAVAKKL------------------------GGPPEKASQTRW-----IL 277 (324)
T ss_pred HHc------ccc-cccceeeccCchHHHHHHHHHHHc------------------------cchHhhhccchh-----hH
Confidence 665 677 9999999999999 9999998888 454433321100 12
Q ss_pred hhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeE
Q 012353 305 LAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFS 367 (465)
Q Consensus 305 ~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~ 367 (465)
+ +++||+++||+|++|.+++++ +++.+|++|+++|+|+|+++++++
T Consensus 278 ~----------------~~~Gn~~sa~~~~~L~~~~~~-~~~~~Gd~vl~~~~G~G~~~~~~~ 323 (324)
T cd00827 278 L----------------RRVGNMYAASILLGLASLLES-GKLKAGDRVLLFSYGSGFTAEAFV 323 (324)
T ss_pred H----------------HHhCchHHHHHHHHHHHHHhc-CCCCCCCEEEEEEeccchhheecc
Confidence 3 899999999999999999998 788899999999999999998875
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=330.66 Aligned_cols=309 Identities=19% Similarity=0.250 Sum_probs=225.3
Q ss_pred eeEEeEEEEecCCceechHHHHHhc-C--CChh---------hh--hhhhcCeEEecCCC--------------------
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHD-G--ASKG---------KY--TIGLGQECMAFCSE-------------------- 49 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~-g--~~~~---------k~--~~Gig~r~~av~~~-------------------- 49 (465)
.+.|.++++|+|+++|+|+++++.. . .+.+ ++ ++||.+|+++..+.
T Consensus 22 ~~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 101 (399)
T PLN03171 22 LAAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAHPEFLDHDAPSLDARL 101 (399)
T ss_pred CcEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccCccccccCCCCHHHHH
Confidence 4789999999999999999998873 2 1112 34 47999999764320
Q ss_pred ---CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHHHHH
Q 012353 50 ---VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALF 125 (465)
Q Consensus 50 ---~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~AL~ 125 (465)
.|.+.+||++|++++|+++|+++++||+||++|+|+++ .|+++.+|+++||+ ...+ +++++.+||+|+++||.
T Consensus 102 ~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~-~P~~a~~v~~~LGl--~~~~~~~~~~~~gC~g~~~aL~ 178 (399)
T PLN03171 102 DIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGL--RPSVRRTMLHLNGCFAGAAALR 178 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCC-CCchHHHHHHHhCC--CcccceeeccCCccHHHHHHHH
Confidence 04799999999999999999999999999999999986 89999999999998 4443 36788889999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccccc-cCCCC---------CcccccceeeeeecCCCCc----cccccccccccc----
Q 012353 126 NCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA---------RPTGGAAAVVMLVGPDAPV----AFESKLRGSHMS---- 187 (465)
Q Consensus 126 ~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~---------~~t~GdGA~A~Ll~~~~~~----~~~~~~~~~~~~---- 187 (465)
+|.+|++++.. ++||||++|.++. .++++ ..+|||||+|+||++++.. .++ +....+.
T Consensus 179 ~A~~li~~~~~--~~vLVv~~e~~s~~~~~~d~~~~~~~v~~~LFGDGAaA~vl~~~~~~~~~~~~~--l~~~~~~~~p~ 254 (399)
T PLN03171 179 LAKDLAENNRG--ARVLVVAAEITLLLFNGPDEGCFQTLLNQGLFGDGAAAVIVGADADAAERPLFE--IVSAAQAIIPE 254 (399)
T ss_pred HHHHHHHhCCC--CeEEEEEEeccccccCCCCcccHHhhhccccccCccEEEEEecCCCCCCCCceE--EEEeeeEEecC
Confidence 99999999954 9999999999742 22222 2589999999999986431 011 1111110
Q ss_pred --CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhh---hhcCCCCCCCCceeeccCCchHHHHHHHHHhh
Q 012353 188 --HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK---LEGKQFSLSNADYFVFHSPYNKLVQKSFARLL 262 (465)
Q Consensus 188 --~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~~did~~~~H~p~~km~~~~~~~L~ 262 (465)
+...+..+.++ ++++++.....+.+.+.++.++++... ....++..+|++++ +||++.+|++.+.++|
T Consensus 255 ~~~~~~~~~~~~g-----~~~~~~~~~vp~~i~~~l~~~l~~~l~~~~~~~~g~~~~di~~~-~Hq~~~~il~~v~~~L- 327 (399)
T PLN03171 255 SDDAINMHFTEGG-----LDGNIGTRQVPGLIGDNIERCLLDAFAPLLGGDGGAEWNDLFWA-VHPGSSAILDQVDAAL- 327 (399)
T ss_pred CchheEEEEEcCC-----ceEEECchhHHHHHHHHHHHHHHHHHHhhcccccCCCcccceEE-EcCCcHHHHHHHHHHc-
Confidence 11111112211 233444333334444444444433210 01235778899887 5999999999999988
Q ss_pred hhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHh
Q 012353 263 FNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN 342 (465)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~ 342 (465)
|++.++.... ..++ +++|||+++|+|++|..++++
T Consensus 328 -----------------------gl~~ek~~~s------~~~l----------------~~yGNtssaSip~~L~~~~~~ 362 (399)
T PLN03171 328 -----------------------GLEPEKLAAS------RRVL----------------SDYGNMFGATVIFALDELRRQ 362 (399)
T ss_pred -----------------------CCCHHHhHHH------HHHH----------------HHhCcchhhhHHHHHHHHHhh
Confidence 7877653210 0134 899999999999999999977
Q ss_pred cCC--CCCC---CEEEEEEeccchheeeeEEEEeC
Q 012353 343 KHS--ELDG---KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 343 ~~~--~~~G---~rill~syGsG~~~~~~~~~~~~ 372 (465)
++ +++| ++|+|++||+|++|++++++|..
T Consensus 363 -~~~~~~~G~~~d~vll~~fG~Glt~~~~ll~~~~ 396 (399)
T PLN03171 363 -MEEAAAAGAWPELGVMMAFGPGLTVDAMLLHASG 396 (399)
T ss_pred -HhhcCCCCCCcceEEEEEEcccHHHHHHHhhccc
Confidence 43 4677 99999999999999999999864
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=321.68 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=225.3
Q ss_pred eEEeEEEEecCCceechHHHHHhcC----C-C-h--h-hh-----hhhhcCeEEecCCC--C------------------
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDG----A-S-K--G-KY-----TIGLGQECMAFCSE--V------------------ 50 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g----~-~-~--~-k~-----~~Gig~r~~av~~~--~------------------ 50 (465)
+.|.+|++.+|++.++|+++.++.. . + + . ++ ..||..|++.+.+. +
T Consensus 17 ~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 96 (393)
T PLN03172 17 ATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQD 96 (393)
T ss_pred eEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHHH
Confidence 6799999999999999999877652 1 1 1 1 12 37999999876310 0
Q ss_pred ---CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCce-eEeecCcChhHHHHHHH
Q 012353 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVDSTNACYGGTAALFN 126 (465)
Q Consensus 51 ---Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~-~~di~~aC~gg~~AL~~ 126 (465)
+...+||++|+++||+++|+++++||+||++|+|+.+ .|+++.+|+++||+ .+.+. .++++.||+|++.||.+
T Consensus 97 ~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~-~P~~a~~l~~~LGl--~~~~~~~~~~~~gC~g~~~aL~~ 173 (393)
T PLN03172 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGL--KPSVKRFMMYQQGCFAGGTVLRL 173 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-CchHHHHHHHHhCC--CCCceEEeeeCCchHHHHHHHHH
Confidence 1246999999999999999999999999999999876 89999999999998 56664 57889999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEecccc--ccCC--C------CCcccccceeeeeecCCCCcccc-c--cccccc------cc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAV--YAEG--P------ARPTGGAAAVVMLVGPDAPVAFE-S--KLRGSH------MS 187 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~--y~~~--~------~~~t~GdGA~A~Ll~~~~~~~~~-~--~~~~~~------~~ 187 (465)
|.++++++ ++++||||++|.++ +.+. . +..+|||||+|+||++++...++ + .+.++. ++
T Consensus 174 A~~~~~~~--~~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvVl~~~~~~~~~~~~~~i~~~~~~~~~~t~ 251 (393)
T PLN03172 174 AKDLAENN--AGSRVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPDTKIERPLFEIVSAAQTILPDSD 251 (393)
T ss_pred HHHHHHcC--CCCeEEEEEEehhhhhhcccccccHHhhhccchhcCceEEEEEecCCCCcccCceeEEeeeccEEecCCc
Confidence 99999999 55999999999985 2221 1 24679999999999986431110 0 111121 11
Q ss_pred Ccccc-cccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhh
Q 012353 188 HAYDF-YKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDF 266 (465)
Q Consensus 188 ~~~df-~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~ 266 (465)
+.+.+ .+.. +..+. .. +.......+.++.+++.++++. +++..|+++|++||++.+|++.+.++|
T Consensus 252 ~~~~~~i~~~-G~~~~-l~-~~vp~~~~~~i~~~~~~~L~~~------gl~~~di~~~~~Hqgg~~Il~~v~~~L----- 317 (393)
T PLN03172 252 GAIDGHLREV-GLTFH-LL-KDVPGLISKNIEKSLVEAFAPI------GINDWNSIFWIAHPGGPAILDQVEIKL----- 317 (393)
T ss_pred ccccceEEcC-CcEEE-Ee-chHHHHHHHHHHHHHHHHhhhc------CCCccccceEEecCCcHHHHHHHHHHc-----
Confidence 11111 1111 11100 11 2222333355666666665554 778899999999999999999999998
Q ss_pred cccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHh---c
Q 012353 267 MRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN---K 343 (465)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~---~ 343 (465)
++++++. .+|..+.+++|||+|+|+++.|..+++. .
T Consensus 318 -------------------gl~~~~~----------------------~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~~ 356 (393)
T PLN03172 318 -------------------DLKEEKL----------------------RATRHVLSDYGNMSSACVLFILDEMRKKSIEE 356 (393)
T ss_pred -------------------CCCHHHH----------------------HHHHHHHHHhCccHHhHHHHHHHHHHhhhhhc
Confidence 6766542 2222233899999999999999998742 1
Q ss_pred CCCCCC---CEEEEEEeccchheeeeEEEEeC
Q 012353 344 HSELDG---KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 344 ~~~~~G---~rill~syGsG~~~~~~~~~~~~ 372 (465)
+++++| ++++|++||+|+++++++++|.+
T Consensus 357 g~~~~G~~~~~~ll~afGpG~t~~~~ll~~~~ 388 (393)
T PLN03172 357 GKGSTGEGLEWGVLFGFGPGLTVETVVLHSVP 388 (393)
T ss_pred CCCCCCCCcceEEEEEeCCcceeeeeeeEecc
Confidence 455556 88999999999999999999964
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=323.20 Aligned_cols=307 Identities=17% Similarity=0.211 Sum_probs=220.3
Q ss_pred eEEeEEEEecCCceechHHHHHhcC------CCh---hhh-----hhhhcCeEEecCCC---------------------
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDG------ASK---GKY-----TIGLGQECMAFCSE--------------------- 49 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g------~~~---~k~-----~~Gig~r~~av~~~--------------------- 49 (465)
+.|.+|++.+|+++++|+++.++.. ..+ .++ +.||.+|++.++..
T Consensus 16 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~~ 95 (389)
T PLN03168 16 ACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRHD 95 (389)
T ss_pred eEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHHH
Confidence 6799999999999999999877652 112 123 47999999876331
Q ss_pred --CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHHHHHH
Q 012353 50 --VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALFN 126 (465)
Q Consensus 50 --~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~AL~~ 126 (465)
.+.+.+||++|+++||+++|++++|||+||++|+|+. ..|+++.+|+++||+ .+.+ +++|++.||+||++||.+
T Consensus 96 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~-~~Ps~a~~l~~~LGl--~~~~~r~~d~~~gC~g~~~aL~~ 172 (389)
T PLN03168 96 IVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGV-NMPGADHALAKLLGL--KPTVKRVMMYQTGCFGGASVLRV 172 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC-CCccHHHHHHHHhCc--CCcceeeeeeCCccHHHHHHHHH
Confidence 0146899999999999999999999999999999995 489999999999998 4544 589999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccccc--cCC--------CCCcccccceeeeeecCCCCcccccccccccccCcccccccC
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAVY--AEG--------PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPN 196 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~y--~~~--------~~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~ 196 (465)
|.++++++ ++++||||++|.++. .+. ....+|||||+|+||++++.-..+.+....+... ....|+
T Consensus 173 A~~~i~~~--~~~~VLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvvl~~~~~~~~~~~~~~~~~~~--~~~~p~ 248 (389)
T PLN03168 173 AKDLAENN--KGARVLAVASEVTAVTYRAPSENHLDGLVGSALFGDGAGVYVVGSDPKPEVEKALFEVHWAG--ETILPE 248 (389)
T ss_pred HHHHHHhC--CCCEEEEEEEehhhhhccCcccccHHHHhccccccCccEEEEEecCCCCccCCcceEEEeee--eEEEcC
Confidence 99999999 459999999999843 211 1246799999999999864211011111111110 011121
Q ss_pred CCC--CCcc-cCC------chhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhc
Q 012353 197 LAS--EYPV-VDG------KLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFM 267 (465)
Q Consensus 197 ~~~--~~p~-~dg------~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~ 267 (465)
... .+.+ ..| +.......+.+..+++.++++. +....|+++|++||++.++++.+.++|
T Consensus 249 s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l~~~------~~~~~d~~~~v~Hqgg~~Il~~v~~~L------ 316 (389)
T PLN03168 249 SDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEARKCV------GSPDWNEMFWAVHPGGPAILDQVEAKL------ 316 (389)
T ss_pred CCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHHHhc------CCCccccceEEecCCcHHHHHHHHHHc------
Confidence 100 0011 111 1111222234444444444443 455567889999999999999999998
Q ss_pred ccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCC
Q 012353 268 RNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSEL 347 (465)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~ 347 (465)
+++.++...+ ...+ +++|||+|+|+++.|..++++ +++
T Consensus 317 ------------------gl~~ek~~~s------~~vl----------------~~yGNtSSaSv~~vL~~~~~~--~~~ 354 (389)
T PLN03168 317 ------------------KLTKDKMQGS------RDIL----------------SEFGNMSSASVLFVLDQIRQR--SVK 354 (389)
T ss_pred ------------------CCCHHHHHHH------HHHH----------------HHhCccHhhhHHHHHHHHHHH--Hhh
Confidence 7777653211 0123 899999999999999998764 222
Q ss_pred C--------CCEEEEEEeccchheeeeEEEEeC
Q 012353 348 D--------GKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 348 ~--------G~rill~syGsG~~~~~~~~~~~~ 372 (465)
+ |++++|++||+|+++++++++|..
T Consensus 355 ~g~~~~~~g~~~~ll~afGpG~t~~~~llr~~~ 387 (389)
T PLN03168 355 MGASTLGEGSEFGFFIGFGPGLTLEVLVLRAAA 387 (389)
T ss_pred cCCCCCCCCccEEEEEEEcchhhhhhhhheecc
Confidence 3 289999999999999999999864
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=322.94 Aligned_cols=306 Identities=17% Similarity=0.236 Sum_probs=227.2
Q ss_pred eEEeEEEEecCCceechHHHHHhcC-------CCh-h-hh-----hhhhcCeEEecCCC----C----------------
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDG-------ASK-G-KY-----TIGLGQECMAFCSE----V---------------- 50 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g-------~~~-~-k~-----~~Gig~r~~av~~~----~---------------- 50 (465)
..|.+|++.+|++.++|+++.++.. .+. . ++ ..||..|++.+.+. +
T Consensus 21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 100 (401)
T PLN03170 21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD 100 (401)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence 6799999999999999999877652 111 1 23 47999999866311 0
Q ss_pred ---CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHHHHHH
Q 012353 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALFN 126 (465)
Q Consensus 51 ---Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~AL~~ 126 (465)
+...+||++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ .+.+ +++|+++||+|++.||.+
T Consensus 101 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~-~Ps~a~~l~~~LGl--~~~~~r~~d~~~gC~G~~~aL~~ 177 (401)
T PLN03170 101 IVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKMLGL--RPSVNRLMMYQQGCFAGGTVLRV 177 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCC-CChHHHHHHHHhCc--CcccHHHHhhcChhHHHHHHHHH
Confidence 1256799999999999999999999999999999976 99999999999998 4554 589999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccccc--cCCC--------CCcccccceeeeeecCCCCccccc---ccccccccCccccc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAVY--AEGP--------ARPTGGAAAVVMLVGPDAPVAFES---KLRGSHMSHAYDFY 193 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~y--~~~~--------~~~t~GdGA~A~Ll~~~~~~~~~~---~~~~~~~~~~~df~ 193 (465)
|.++++++ ++++||||++|.++. .+.. ...+|||||+|+||++++.-.+.. .+.... ...
T Consensus 178 A~~l~~~~--~~~~vLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvVl~~~~~~~~~~~~~~l~~~~-----~~~ 250 (401)
T PLN03170 178 AKDLAENN--RGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSAS-----QTI 250 (401)
T ss_pred HHHHHHcC--CCCeEEEEEEehhhhccCCcccchhhhhhhhhhhhceeEEEEEecCCcccccCCceEEeecc-----ceE
Confidence 99999999 559999999999742 1111 136899999999999865311110 011110 011
Q ss_pred ccCCCC--CCc-ccCC------chhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhh
Q 012353 194 KPNLAS--EYP-VVDG------KLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFN 264 (465)
Q Consensus 194 ~p~~~~--~~p-~~dg------~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~ 264 (465)
.|.... .+. ..+| +.......+.+..++++++++. |+..+|+++|++||++.+|++.+.++|
T Consensus 251 ~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L~~~------gl~~~di~~~v~Hqgg~~il~~v~~~L--- 321 (401)
T PLN03170 251 LPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPL------GITDYNSIFWVAHPGGPAILDQVEAKV--- 321 (401)
T ss_pred ecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHHHhc------CCCccccCeEEecCCcHHHHHHHHHHc---
Confidence 221100 000 1122 2233344456666677766665 788899999999999999999999988
Q ss_pred hhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHH---
Q 012353 265 DFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIH--- 341 (465)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~--- 341 (465)
+++.++. .+|+.+.+++|||+|+|+++.|..+++
T Consensus 322 ---------------------gl~~~~~----------------------~~s~~~l~~~GNtsSasv~~vL~~~~~~~~ 358 (401)
T PLN03170 322 ---------------------GLEKERM----------------------RATRHVLSEYGNMSSACVLFILDEMRKRSA 358 (401)
T ss_pred ---------------------CCChHHH----------------------HHHHHHHHHhCccHHhHHHHHHHHHHHhHh
Confidence 7776542 122223389999999999999999984
Q ss_pred hcCCCCCC---CEEEEEEeccchheeeeEEEEeC
Q 012353 342 NKHSELDG---KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 342 ~~~~~~~G---~rill~syGsG~~~~~~~~~~~~ 372 (465)
+.+++++| ++++|++||+|+++++++++|.+
T Consensus 359 ~~g~~~~G~~~~~~ll~afGpG~t~~~~ll~~~~ 392 (401)
T PLN03170 359 EDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVP 392 (401)
T ss_pred hcCCCCCCCCccEEEEEEeCchHhHHhHHheecc
Confidence 22566677 89999999999999999999965
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=316.76 Aligned_cols=303 Identities=16% Similarity=0.129 Sum_probs=227.6
Q ss_pred eeEEeEEEEecCCceechHHHHHhcC------------------------CChhhh--hhhhcCeEEecCCC--------
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDG------------------------ASKGKY--TIGLGQECMAFCSE-------- 49 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g------------------------~~~~k~--~~Gig~r~~av~~~-------- 49 (465)
+|+|.++++|+|+++|+|+++++.++ .+.+++ .+||..|+++....
T Consensus 2 ~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~ 81 (372)
T PRK07515 2 NVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRMR 81 (372)
T ss_pred CcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEEEecccccCcccccC
Confidence 68999999999999999999987632 123455 47999999764210
Q ss_pred --------C--CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChh
Q 012353 50 --------V--EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYG 119 (465)
Q Consensus 50 --------~--Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~g 119 (465)
. ....+|++.|++++|+++|+++++||.|+++|+++.+..|+.+..|++.||+ . +.+++++++|+|
T Consensus 82 ~~~~~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl--~--~~~~~v~~aCas 157 (372)
T PRK07515 82 PRIPERSNDELSIQAEMGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGI--E--GFAFDMNVACSS 157 (372)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCC--C--CcEEEecchhHH
Confidence 1 1346899999999999999999999999999998888899999999999997 2 568999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEecccc-ccC---CCCCcccccceeeeeecCCCCcc--cccccccccc-cCcccc
Q 012353 120 GTAALFNCVNWVESSSWDGRYGLVVCTDSAV-YAE---GPARPTGGAAAVVMLVGPDAPVA--FESKLRGSHM-SHAYDF 192 (465)
Q Consensus 120 g~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-y~~---~~~~~t~GdGA~A~Ll~~~~~~~--~~~~~~~~~~-~~~~df 192 (465)
++.||..|..+|++|.. ++||||++|..+ +.+ .....+|||||+|+||++.+... -.....++.. .+..+.
T Consensus 158 g~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~d~~~~~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~~~~~~ 235 (372)
T PRK07515 158 ATFGIQTAANAIRSGSA--RRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATSAGGFEILGTRLFTQFSNN 235 (372)
T ss_pred HHHHHHHHHHHHHcCCC--CEEEEEeeecccccccccCCCCCEEecCccEEEEEeeccccccCCCceEEEEEeecccccc
Confidence 99999999999999965 999999999874 222 22347899999999999864210 0000111110 000011
Q ss_pred c----------ccCC---CCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHH
Q 012353 193 Y----------KPNL---ASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFA 259 (465)
Q Consensus 193 ~----------~p~~---~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~ 259 (465)
+ .+.. ...+..++|...++.+.+.+.++++.++++. |++++|||+|++||++.+|.+.+.+
T Consensus 236 ~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~------gl~~~dId~~~~Hq~~~~~~d~~~~ 309 (372)
T PRK07515 236 IRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHLAEN------GLTPADVKRFWLHQANINMNQLIGK 309 (372)
T ss_pred eecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHHH
Confidence 1 1100 0001124676666677777888888887775 7999999999999999999999887
Q ss_pred HhhhhhhcccccchhhHhhhccCCCCCC--CCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHH
Q 012353 260 RLLFNDFMRNASSVDEAAKEKLGPFSTL--SGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALA 337 (465)
Q Consensus 260 ~L~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~ 337 (465)
+++ ++ +.++. +.++ +++|||++||+|++|.
T Consensus 310 ~ll-----------------------g~~~~~~~~---------~~~~----------------~~~GNt~sasi~~~L~ 341 (372)
T PRK07515 310 KVL-----------------------GRDATPEEA---------PVIL----------------DEYANTSSAGSIIAFH 341 (372)
T ss_pred Hhc-----------------------cCCCChhhc---------eEeH----------------HhcCCchhhHHHHHHH
Confidence 742 32 22221 1123 8999999999999999
Q ss_pred HHHHhcCCCCCCCEEEEEEeccchheeeeEEE
Q 012353 338 SLIHNKHSELDGKRVVLFSYGSGLTATMFSLK 369 (465)
Q Consensus 338 ~ll~~~~~~~~G~rill~syGsG~~~~~~~~~ 369 (465)
.+++ ++++||+|+|++||+|+++++++++
T Consensus 342 ~~~~---~~~~Gd~vll~~~G~G~~~~~~ll~ 370 (372)
T PRK07515 342 KHSD---DLAAGDLGVICSFGAGYSIGSVIVR 370 (372)
T ss_pred HHhc---cCCCCCEEEEEEecccHHHHHHHhc
Confidence 9853 4689999999999999999988765
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=315.34 Aligned_cols=308 Identities=18% Similarity=0.244 Sum_probs=226.0
Q ss_pred eEEeEEEEecCCceechHHHHHhcC------CChh---hh-----hhhhcCeEEecCCC----C----------------
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDG------ASKG---KY-----TIGLGQECMAFCSE----V---------------- 50 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g------~~~~---k~-----~~Gig~r~~av~~~----~---------------- 50 (465)
+.|.+|++.+|++.++|+++.++.. ..+. ++ ..||..|++.+++. .
T Consensus 17 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 96 (391)
T PLN03173 17 ATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQD 96 (391)
T ss_pred eEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHHH
Confidence 6799999999999999999877652 1221 22 47999999876321 0
Q ss_pred ---CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHHHHHH
Q 012353 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALFN 126 (465)
Q Consensus 51 ---Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~AL~~ 126 (465)
+.+.+||++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ .+.+ ++++++.||+|++.||.+
T Consensus 97 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~-~P~~a~~l~~~LGl--~~~~~~~~~~~~gC~g~~~aL~~ 173 (391)
T PLN03173 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGL--RSSVKRFMMYQQGCFAGGTVLRL 173 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-ccHHHHHHHHHhCC--CccceeeehhcCccHHHHHHHHH
Confidence 1256999999999999999999999999999999976 89999999999998 4555 467889999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEecccc--ccCCC--------CCcccccceeeeeecCCCCccccc---cccccc------cc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAV--YAEGP--------ARPTGGAAAVVMLVGPDAPVAFES---KLRGSH------MS 187 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~--y~~~~--------~~~t~GdGA~A~Ll~~~~~~~~~~---~~~~~~------~~ 187 (465)
|.+|++++ ++++||||++|.++ +.+.. ...+|||||+|+||++++...+.. .+.++. ++
T Consensus 174 A~~~~~~~--~~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvvl~~~~~~~~~~~~~~l~~~~~~~~~~t~ 251 (391)
T PLN03173 174 AKDLAENN--KGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIIGSDPVLGVEKPLFELVSAAQTILPDSD 251 (391)
T ss_pred HHHHHHhC--CCCeEEEEEEehhhhhhCCccccchhhhhhhhhhcCceEEEEEeCCCCCCcCCcceEEEeeeeEEecCCc
Confidence 99999999 56999999999975 32221 236799999999999754321110 011111 11
Q ss_pred Ccccc-cccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhh
Q 012353 188 HAYDF-YKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDF 266 (465)
Q Consensus 188 ~~~df-~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~ 266 (465)
+.+.+ .++. +..+. .. +.......+.++.+++.++++. |++.+|+|+|++||++.++++.+.++|
T Consensus 252 ~~~~~~i~~~-G~~~~-l~-~~vp~~~~~~~~~~i~~~L~~~------gl~~~di~~~v~Hqgg~~Il~~v~~~L----- 317 (391)
T PLN03173 252 GAIDGHLREV-GLTFH-LL-KDVPGLISKNVEKSLTEAFKPL------GISDWNSLFWIAHPGGPAILDQVEAKL----- 317 (391)
T ss_pred cceeeEEEcC-ceEEE-Ee-cHHHHHHHHHHHHHHHHHHHhc------CCCccccCeEEECCCcHHHHHHHHHHc-----
Confidence 11111 1111 11100 11 2233334456677777777665 788899999999999999999999988
Q ss_pred cccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHh---c
Q 012353 267 MRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN---K 343 (465)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~---~ 343 (465)
++++++.. +|+...+++|||+|+|+++.|..++++ .
T Consensus 318 -------------------gL~~ekl~----------------------~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~~ 356 (391)
T PLN03173 318 -------------------ALKPEKLR----------------------ATRHVLSEYGNMSSACVLFILDEMRKKSAED 356 (391)
T ss_pred -------------------CCChHHHH----------------------HHHHHHHHhCcchhhHHHHHHHHHHHhhhhc
Confidence 77766432 122223899999999999999999963 1
Q ss_pred CCCC--CC-CEEEEEEeccchheeeeEEEEeC
Q 012353 344 HSEL--DG-KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 344 ~~~~--~G-~rill~syGsG~~~~~~~~~~~~ 372 (465)
+.+. +| +++++++||+|+++++++++|..
T Consensus 357 ~~~~~g~~~~~~l~~afGpG~t~e~~ll~~~~ 388 (391)
T PLN03173 357 GLKSTGEGLEWGVLFGFGPGLTVETVVLHSVA 388 (391)
T ss_pred CCCCCCCCcceEEEEEeCchHHHHHHHHhhcc
Confidence 2222 33 88999999999999999998754
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=311.27 Aligned_cols=315 Identities=17% Similarity=0.248 Sum_probs=225.2
Q ss_pred CceeEEeEEEEecCCc--eechHHHHHhc---C-CChh------hh--hhhhcCeEEecCC------C-------CCCHH
Q 012353 2 AKNVGILAMDIYFPPT--CVQQEALEAHD---G-ASKG------KY--TIGLGQECMAFCS------E-------VEDVI 54 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~------~-------~Ed~~ 54 (465)
|..|++...++|.|+. +++.+.+.+.. | .+++ |+ +.|||++ ..+|+ + .|.+.
T Consensus 95 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~-t~~p~~~~~~~~~~~~~~~~~ea~ 173 (502)
T PLN02377 95 PRPVYLVDYSCYRAPDHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGED-TYVPEAMHYIPPRPSMAAAREEAE 173 (502)
T ss_pred CCCEEEEeeeeecCCccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCc-cccCchhccCCccchHHHHHHHHH
Confidence 6789999999999875 57888776553 3 3333 22 4799984 33441 1 24588
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHHc
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVES 133 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~s 133 (465)
+++..|+++||+++|++|+|||.||+ |+|+....|++++.|+++||+ .+++.+||++ +||+||+.||.+|.+++++
T Consensus 174 ~l~~~A~~~aL~kaGi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGl--r~~v~afdL~gmGCsggl~aL~lA~~ll~~ 250 (502)
T PLN02377 174 QVMFGALDNLFANTNVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKL--RGNIRSFNLGGMGCSAGVIAVDLAKDMLQV 250 (502)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCC--CCCCeEEecccchhhHHHHHHHHHHHHHHc
Confidence 99999999999999999999999987 899998999999999999998 6689999999 7999999999999999999
Q ss_pred CCCCCCEEEEEEeccccc----cCCCC----CcccccceeeeeecCCCCcc----ccc-ccccccc--c-Ccccc-ccc-
Q 012353 134 SSWDGRYGLVVCTDSAVY----AEGPA----RPTGGAAAVVMLVGPDAPVA----FES-KLRGSHM--S-HAYDF-YKP- 195 (465)
Q Consensus 134 g~~~~~~aLVVasD~~~y----~~~~~----~~t~GdGA~A~Ll~~~~~~~----~~~-~~~~~~~--~-~~~df-~~p- 195 (465)
+ ++++||||++|..+. .+... ..+|||||+|+||++.+... +.. ++..++. . +.++. +.|
T Consensus 251 ~--~~~~aLVVstE~~S~~~~~~d~~s~lv~n~LFgDGAaAvlLs~~~~~~~~a~~~l~~iv~t~~~~d~~~~~~i~~~~ 328 (502)
T PLN02377 251 H--RNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYKLVHVVRTHRGADDKAFRCVYQEQ 328 (502)
T ss_pred C--CCCEEEEEEEeccccccCCCCCccccccceeeccccEEEEEecccccccccccccceEEEEEEEEcCCccceeeecc
Confidence 9 559999999999732 22222 36799999999999743210 000 1122221 1 12222 222
Q ss_pred --CCCC------CCcccCCchhHHHHHHHH---------------HHHHHHHHHHhhhhhcCC-CCCCCCceeeccCCch
Q 012353 196 --NLAS------EYPVVDGKLSQTCYLMAL---------------DTCYKCLCSKYEKLEGKQ-FSLSNADYFVFHSPYN 251 (465)
Q Consensus 196 --~~~~------~~p~~dg~~s~~~y~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~did~~~~H~p~~ 251 (465)
.++. +.|.+.|+. ...++..+ ...+....++. ++..+ ...+|||+||+||++.
T Consensus 329 d~~G~~g~~ls~dl~~v~g~~-l~~~i~~lg~~vl~~se~~~~~a~~~~~~~~~~~--l~~~~p~~~~didhf~iHqggr 405 (502)
T PLN02377 329 DDAGKTGVSLSKDLMAIAGEA-LKTNITTLGPLVLPISEQLLFFATLVVKKLFNKK--MKPYIPDFKLAFDHFCIHAGGR 405 (502)
T ss_pred ccCCCCCCCCCcchhhHhhHH-HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH--HhhccCCcHhhcCEEEECCCCH
Confidence 2221 112233221 11111100 01111111111 01111 3468999999999999
Q ss_pred HHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhh
Q 012353 252 KLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTAS 331 (465)
Q Consensus 252 km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS 331 (465)
++++.+.++| ++++++ +|+...++ +++|||+|+|
T Consensus 406 ~IId~v~k~L------------------------gL~~~~------~e~sr~tL----------------~r~GNTSSaS 439 (502)
T PLN02377 406 AVIDELEKNL------------------------QLLPVH------VEASRMTL----------------HRFGNTSSSS 439 (502)
T ss_pred HHHHHHHHHc------------------------CCCccc------chHHHHHH----------------HhcCCchhhH
Confidence 9999999988 666432 44555666 8999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 332 LYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 332 ~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
+|+.|..++++ +++++|++|++++||+|+++++.++++..
T Consensus 440 I~~aL~~~~~~-grik~Gd~VlliaFGsGf~~~s~v~~~~~ 479 (502)
T PLN02377 440 IWYELAYIEAK-GRMRKGNRVWQIAFGSGFKCNSAVWEALR 479 (502)
T ss_pred HHHHHHHHHHc-CCCCCCCeEEEEEEccccEeeeEEEEEec
Confidence 99999999887 88999999999999999999999999876
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=307.01 Aligned_cols=312 Identities=19% Similarity=0.254 Sum_probs=221.8
Q ss_pred CceeEEeEEEEecCCc--eechHHHHHhc---C-CChh------hh--hhhhcCeEEecCCC-------------CCCHH
Q 012353 2 AKNVGILAMDIYFPPT--CVQQEALEAHD---G-ASKG------KY--TIGLGQECMAFCSE-------------VEDVI 54 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~~-------------~Ed~~ 54 (465)
|..|++...++|-|+. +++.+.+.+.. | .+++ |+ +.|+|++.+ +|+. .+.+.
T Consensus 111 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~ty-~P~~~~~~~~~~~~~~~r~ea~ 189 (521)
T PLN02854 111 SKPVYLVDFACYKPEDERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDETY-LPRGITSRPPNLCMEEARAEAE 189 (521)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-cCccccCCCCcchHHHHHHHHH
Confidence 6789999999999875 57887766543 3 3333 22 589998864 3321 12355
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHHc
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVES 133 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~s 133 (465)
.....|+.++|+++|++|+|||.||+ ++|+++..|+++++|+++||+ ..++.+||++ +||+||+.||.+|.+++++
T Consensus 190 ~v~~~~~~~lL~kaGi~p~dID~LIv-~cS~~~p~PSlAa~I~n~LGl--r~~i~afdLsgmGCSggl~aL~lA~~lL~~ 266 (521)
T PLN02854 190 AVMFGALDSLFSKTGVKPRDIGILIV-NCSLFNPTPSLSAMIVNHYKL--RTDIKSYNLGGMGCSAGLISIDLANDLLKA 266 (521)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCCHHHHHHHHhCC--CCCceEEecccchhhhHHHHHHHHHHHHHh
Confidence 66677899999999999999999998 578888899999999999998 5689999998 8999999999999999999
Q ss_pred CCCCCCEEEEEEecccccc-----CCCC---CcccccceeeeeecCCCCc-c---ccc-ccccccc---cCccc-ccccC
Q 012353 134 SSWDGRYGLVVCTDSAVYA-----EGPA---RPTGGAAAVVMLVGPDAPV-A---FES-KLRGSHM---SHAYD-FYKPN 196 (465)
Q Consensus 134 g~~~~~~aLVVasD~~~y~-----~~~~---~~t~GdGA~A~Ll~~~~~~-~---~~~-~~~~~~~---~~~~d-f~~p~ 196 (465)
+ ++++||||++|..+.. +... ..+|||||+|+||++.+.. . +.. +...++. .+.++ .+.|.
T Consensus 267 ~--~~~~aLVVstE~~S~~~y~g~Drs~lv~~~LFgDGAAAvlLs~~~~~~~~~k~~L~~~v~t~~~ad~~~~~~i~~~~ 344 (521)
T PLN02854 267 N--PNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAVLLSNKARDRKRSKYQLVHTVRTHKGADDKNYNCVYQRE 344 (521)
T ss_pred C--CCCeEEEEEEeeeecCCCCCCchhhhcceeeeccceeEEEEecccccccccchheeeEEEEEEeeCCCccCeEEecc
Confidence 9 5599999999997521 1112 3679999999999975411 0 000 0112221 11122 22221
Q ss_pred --CCC-------CCcc-----------cCCchhHHHHH--HHHHHHHHHHHHHhhhhhcCCCCC------CCCceeeccC
Q 012353 197 --LAS-------EYPV-----------VDGKLSQTCYL--MALDTCYKCLCSKYEKLEGKQFSL------SNADYFVFHS 248 (465)
Q Consensus 197 --~~~-------~~p~-----------~dg~~s~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~------~did~~~~H~ 248 (465)
.+. +.|. +.|+..+.... ..+....++.+.+ .++++ +||||||+||
T Consensus 345 d~~G~~g~~lsk~l~~va~~~l~~~i~~~g~~Vl~~se~~~f~~~~i~~~L~~------~gl~~~~pd~~~didhf~iHq 418 (521)
T PLN02854 345 DDKGTIGVSLARELMAVAGDALKTNITTLGPLVLPLSEQFMFFVTLVRRKLLK------AKVKPYIPDFKLAFEHFCIHA 418 (521)
T ss_pred CCCCcccccccccccchhhhhhhhhhhhccccccchHHHHHHHHHHHHHHHHH------cCCCccCCcccccCcEEEECC
Confidence 110 1111 12222211110 0011222222222 35554 6899999999
Q ss_pred CchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccc
Q 012353 249 PYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMY 328 (465)
Q Consensus 249 p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~ 328 (465)
++.++++.+.++| ++++++ +|+...++ +++|||+
T Consensus 419 ggr~IId~v~k~L------------------------gL~~~~------~e~sr~tL----------------~rfGNTS 452 (521)
T PLN02854 419 GGRAVLDELQKNL------------------------QLSDWH------MEPSRMTL----------------HRFGNTS 452 (521)
T ss_pred CCHHHHHHHHHHc------------------------CCCccc------ccchHHHh----------------hhcCChH
Confidence 9999999999998 666432 33444556 8999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 329 TASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 329 taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
|+|+|+.|+.+.++ +++++||+|++++||+|++|++.+++|-.
T Consensus 453 SASI~~~L~~~~~k-Grik~GD~Vl~iaFGsGft~~sav~~~~~ 495 (521)
T PLN02854 453 SSSLWYELAYTEAK-GRVSAGDRVWQIAFGSGFKCNSAVWKALR 495 (521)
T ss_pred hhHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhhheeeEEec
Confidence 99999999999987 88999999999999999999999999976
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=303.09 Aligned_cols=311 Identities=21% Similarity=0.275 Sum_probs=221.6
Q ss_pred CCceeEEeEEEEecCCc--eechHHHHHhc------C-CChh---------hh--hhhhcCeEEecCCCC----------
Q 012353 1 MAKNVGILAMDIYFPPT--CVQQEALEAHD------G-ASKG---------KY--TIGLGQECMAFCSEV---------- 50 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~--~v~~~~l~~~~------g-~~~~---------k~--~~Gig~r~~av~~~~---------- 50 (465)
.|..|++...++|-|+. +++.+.+.+.. | .+.+ |+ ++|||+|++. +..-
T Consensus 64 ~~~~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t~~-p~~~~~~~~~~~~~ 142 (478)
T PLN02932 64 RPKPVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQETYI-PEGLQCLPLQQNLA 142 (478)
T ss_pred CCCcEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCceee-ccccccCCHHHHHH
Confidence 36789999999999875 57777766543 2 2221 22 4799999864 3221
Q ss_pred ---CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHH
Q 012353 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFN 126 (465)
Q Consensus 51 ---Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~ 126 (465)
|.+.+|+..|+++||+++|++|+|||.||++|+|+. ..|++++.|+++||+ .+++.+||++ +||+||+.||.+
T Consensus 143 ~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~-~~Pslaa~V~~~lGl--r~~i~~fdL~gmGCSggl~aL~l 219 (478)
T PLN02932 143 VSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFN-PTPSLSSILVNKFKL--RDNIKSLNLGGMGCSAGVIAIDA 219 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCC-CCCcHHHHHHHHhCC--CCCceEEEeccchhhhHHHHHHH
Confidence 248899999999999999999999999999999986 899999999999998 6689999998 899999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccccc----cCC----CCCcccccceeeeeecCCCCc------cccccccccccc---Cc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAVY----AEG----PARPTGGAAAVVMLVGPDAPV------AFESKLRGSHMS---HA 189 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~y----~~~----~~~~t~GdGA~A~Ll~~~~~~------~~~~~~~~~~~~---~~ 189 (465)
|.++++++ ++++||||++|..+. .+. -...+|||||+|+||+..+.. .+. ....++.. +.
T Consensus 220 A~~ll~~~--~~~~aLVVstE~~S~~~~~~d~r~~l~t~~LFgDGAAAvlLs~~~~~~~~~~~~L~-~~v~t~~~ad~~~ 296 (478)
T PLN02932 220 AKSLLQVH--RNTYALVVSTENITQNLYLGNNKSMLVTNCLFRIGGAAILLSNRSRDRKRAKYELV-HTVRVHTGADDRS 296 (478)
T ss_pred HHHHHHcC--CCCeEEEEEEeecccccCCCcchhhhccceeecccceEEEEecccccccCcceEEE-eeeeeeeccCCCc
Confidence 99999999 559999999999732 121 124679999999999976421 111 01122211 11
Q ss_pred cc-ccccC---CC-----C-CCccc-----------CCchh------HHHHHHHHHHHHHHHHHHhhhhhcCCCCC---C
Q 012353 190 YD-FYKPN---LA-----S-EYPVV-----------DGKLS------QTCYLMALDTCYKCLCSKYEKLEGKQFSL---S 239 (465)
Q Consensus 190 ~d-f~~p~---~~-----~-~~p~~-----------dg~~s------~~~y~~~~~~~~~~~~~~~~~~~~~~~~~---~ 239 (465)
++ .+.+. +. + +.|.+ .|... +..++..+. +.+.+.. ..+..+ +
T Consensus 297 ~~~v~~~~d~~G~~g~~Lsk~lp~~~~~al~~ni~~~~p~v~p~~e~~~~~~~~~~---~~~~k~~----~~~~~~~~~~ 369 (478)
T PLN02932 297 YECATQEEDEDGIVGVSLSKNLPMVAARTLKINIATLGPLVLPLSEKFHFFVRFVK---KKFFNPK----LKHYIPDFKL 369 (478)
T ss_pred cccceeecccCCcceeeECccchHHHHHHHhhhhhccccccccchhhhHHHHHHhH---HHHHHHH----hhcCcHhHHh
Confidence 11 12221 00 0 11111 11110 011111111 1111110 012222 5
Q ss_pred CCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcc
Q 012353 240 NADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTL 319 (465)
Q Consensus 240 did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~ 319 (465)
+||+||+||++.++++.+.++| |++.+ ++|+...++
T Consensus 370 ~id~f~iHqggr~IIdav~k~L------------------------gL~~~------~~e~s~~tL-------------- 405 (478)
T PLN02932 370 AFEHFCIHAGGRALIDEMEKNL------------------------HLTPL------DVEASRMTL-------------- 405 (478)
T ss_pred hhceEEEccCCHHHHHHHHHHc------------------------CCChH------HHHHHHHHH--------------
Confidence 8999999999999999999988 66653 355666667
Q ss_pred cccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 320 IPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 320 ~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
+++|||+|+|+|+.|+.+..+ +++++||+|++++||+|+++++.+++.-.
T Consensus 406 --~rfGNTSSaSI~~~L~~~ea~-grik~Gd~vl~iaFGsGf~~~s~vw~~~~ 455 (478)
T PLN02932 406 --HRFGNTSSSSIWYELAYTEAK-GRMKKGDRIWQIALGSGFKCNSSVWVALR 455 (478)
T ss_pred --HHhCChhhhHHHHHHHHHHHc-CCCCCCCEEEEEEEeccHHHHHHHHHHhc
Confidence 999999999999999999877 88899999999999999999998887544
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=297.19 Aligned_cols=312 Identities=17% Similarity=0.219 Sum_probs=218.0
Q ss_pred CceeEEeEEEEecCCc--eechHHHHHhc---C-CChh------hh--hhhhcCeEEecCC------C-------CCCHH
Q 012353 2 AKNVGILAMDIYFPPT--CVQQEALEAHD---G-ASKG------KY--TIGLGQECMAFCS------E-------VEDVI 54 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~------~-------~Ed~~ 54 (465)
|..|++...++|-|+. .++.+.+.+.. | .+++ |+ ++|+|++.+ +|+ + .+.+.
T Consensus 99 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~-~p~~~~~~~~~~~~~~~~~Ea~ 177 (511)
T PLN02192 99 PRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTY-LPEAVLNVPPNPCMAEARKEAE 177 (511)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-CChhhccCCCCccHHHHHHHHH
Confidence 6789999999999876 57777776553 3 3333 22 589998764 332 1 23467
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHHc
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVES 133 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~s 133 (465)
.+...|+++||+++|++|+|||.||++ +|+....|++++.|+++||+ ..++.+||++ +||+||+.||.+|.+++++
T Consensus 178 ~~~~~Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGl--r~~i~afdLsgmGCSggl~aLdlA~~lL~a 254 (511)
T PLN02192 178 TVMFGAIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKL--RGNILSYNLGGMGCSAGLISIDLAKHLLQV 254 (511)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCC--CCCceEEEcccchhhhHHHHHHHHHHHHHc
Confidence 889999999999999999999999987 56778899999999999998 5689999998 7999999999999999999
Q ss_pred CCCCCCEEEEEEecccccc--CCCCC------cccccceeeeeecCCCCc------cccccccccccc---Cccc-cccc
Q 012353 134 SSWDGRYGLVVCTDSAVYA--EGPAR------PTGGAAAVVMLVGPDAPV------AFESKLRGSHMS---HAYD-FYKP 195 (465)
Q Consensus 134 g~~~~~~aLVVasD~~~y~--~~~~~------~t~GdGA~A~Ll~~~~~~------~~~~~~~~~~~~---~~~d-f~~p 195 (465)
+ ++++||||++|..+.. .+.++ .+|||||+|+||++.+.. .+.. ...++.. ..++ .+.|
T Consensus 255 ~--~~~~aLVVstE~~S~n~y~g~drs~lv~n~LFgDGAaAvLLs~~~~~~~~~k~~L~~-~vrt~~~~dd~~~~~v~~~ 331 (511)
T PLN02192 255 H--PNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNKRSDRRRSKYQLVH-TVRTHKGADDKCFACVTQE 331 (511)
T ss_pred C--CCCeEEEEEEEeccccCCCCCCHHHHhccccccccceEEEEeccccccccccceeee-eEEEEecCChhhccceecc
Confidence 9 5599999999998522 11222 579999999999984311 1110 0111111 1111 1112
Q ss_pred CCC---------CCCcccCCch-h--H--------------HHHHHH-HHHHHHHHHHHhhhhhcCCCCCCCCceeeccC
Q 012353 196 NLA---------SEYPVVDGKL-S--Q--------------TCYLMA-LDTCYKCLCSKYEKLEGKQFSLSNADYFVFHS 248 (465)
Q Consensus 196 ~~~---------~~~p~~dg~~-s--~--------------~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~ 248 (465)
... .+.|.+-|.. . + ..++.. -++.++...+... .....+||+||+||
T Consensus 332 ed~~g~~g~~Lskdl~~vag~al~~ni~~l~p~vlp~~e~~~~~~~m~gr~vfk~~~~~~~-----p~~~~~Idhf~iHq 406 (511)
T PLN02192 332 EDSAGKIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKLKPYI-----PDFKLAFEHFCIHA 406 (511)
T ss_pred cccccceeeEecchhhhhhhhhhhhhhhhcccccCccchhhceeEEEcChHHHHHHhhhcc-----HHHHHhhceEeecc
Confidence 100 0001011100 0 0 000000 0011110011000 00114799999999
Q ss_pred CchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccc
Q 012353 249 PYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMY 328 (465)
Q Consensus 249 p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~ 328 (465)
++.++++.+.++| +++.+ ++|+...++ +++|||+
T Consensus 407 ggr~IId~v~k~L------------------------gL~~~------~~e~sr~tL----------------~rfGNTS 440 (511)
T PLN02192 407 GGRAVLDELEKNL------------------------QLSDW------HMEPSRMTL----------------YRFGNTS 440 (511)
T ss_pred CCHHHHHHHHHHc------------------------CCCch------hhhHHHHHH----------------hHcCChH
Confidence 9999999999988 66542 245556666 9999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 329 TASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 329 taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
|+|+|+.|+.+.++ +++++||+|++++||+|+++++.+++|..
T Consensus 441 SaSI~~aL~~~eak-grik~GDrVl~iaFGsGf~~~sav~~~~~ 483 (511)
T PLN02192 441 SSSLWYELAYSEAK-GRIKKGDRTWQIAFGSGFKCNSAVWKALR 483 (511)
T ss_pred HhHHHHHHHHHHHc-CCCCCCCEEEEEEEcchHhhhhhheeeec
Confidence 99999999999887 88999999999999999999999999976
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=276.52 Aligned_cols=318 Identities=17% Similarity=0.235 Sum_probs=214.7
Q ss_pred CCceeEEeEEEEecCCc--eechHHHHHhc---C-CChh------hh--hhhhcCeEEecCC------------CCCCHH
Q 012353 1 MAKNVGILAMDIYFPPT--CVQQEALEAHD---G-ASKG------KY--TIGLGQECMAFCS------------EVEDVI 54 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~------------~~Ed~~ 54 (465)
.|..|++...++|-|+. +++.+.+.+.. | .+++ |+ ++|||++.+ ++. +.....
T Consensus 56 ~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~et~-~p~~~~~~~~~~~~~~~~~e~ 134 (466)
T PLN00415 56 RSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTY-SPRCMLTSPPTPSMYEARHES 134 (466)
T ss_pred CCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCee-eCCccccCCCCCChhhhHHHH
Confidence 36789999999999865 57777765543 2 3333 22 368887643 111 233456
Q ss_pred HHHHH-HHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecC-cChhHHHHHHHHHHHHH
Q 012353 55 SMSLT-AVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN-ACYGGTAALFNCVNWVE 132 (465)
Q Consensus 55 ~la~~-Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~-aC~gg~~AL~~A~~~l~ 132 (465)
+|++. |++++|+++|++|+|||.||+ ++|+....|+.++.|+++||+ .+++.++|+++ ||+||+.||.+|.++++
T Consensus 135 em~i~~A~~~aL~~aGi~p~dID~LIv-s~T~~~~~Pslaa~l~~~LGL--r~~v~~~dL~gmGCsggv~aL~lA~~ll~ 211 (466)
T PLN00415 135 ELVIFGALNSLFKKTGIEPREVGIFIV-NCSLFNPNPSLSSMIVNRYKL--KTDVKTYNLSGMGCSAGAISVDLATNLLK 211 (466)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-ECcCCCCCchHHHHHHHHhCC--CCCceEEEeccccchHHHHHHHHHHHHHH
Confidence 77777 677889999999999999985 678877799999999999998 67999999995 99999999999999999
Q ss_pred cCCCCCCEEEEEEeccccc--cCCCC------CcccccceeeeeecCCCCc----cccc-ccccccccCcccc-----cc
Q 012353 133 SSSWDGRYGLVVCTDSAVY--AEGPA------RPTGGAAAVVMLVGPDAPV----AFES-KLRGSHMSHAYDF-----YK 194 (465)
Q Consensus 133 sg~~~~~~aLVVasD~~~y--~~~~~------~~t~GdGA~A~Ll~~~~~~----~~~~-~~~~~~~~~~~df-----~~ 194 (465)
++ ++++||||++|.++. -++++ ..+|||||+|+||+.++.. .++. ....+++.+..+- |.
T Consensus 212 a~--~~~~aLVVs~E~~S~~~~~~~dr~~lv~n~LFgDGAAAvlLs~~~~~~~~~~~~L~~~vrt~~~~~d~~~~~~~~~ 289 (466)
T PLN00415 212 AN--PNTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQDRVRSKYELTHIVRTHKGSSDKHYTCAEQK 289 (466)
T ss_pred hC--CCCEEEEEEEecccccccCCCcHhHhccceeecccceEEEEecCcccccCccceeeeEEEecCCCChhhhcceeee
Confidence 99 669999999999742 12222 3679999999999986421 1111 1222332211111 11
Q ss_pred cCCCCCCc-ccCCchhHHHHHHHHHHHHHHHHHHhh--------------h-hhcCCCCC--CC----CceeeccCCchH
Q 012353 195 PNLASEYP-VVDGKLSQTCYLMALDTCYKCLCSKYE--------------K-LEGKQFSL--SN----ADYFVFHSPYNK 252 (465)
Q Consensus 195 p~~~~~~p-~~dg~~s~~~y~~~~~~~~~~~~~~~~--------------~-~~~~~~~~--~d----id~~~~H~p~~k 252 (465)
-+ ...+. ..=.+.....--+++...+..+..... + ........ .| +++||+|+++.+
T Consensus 290 ~d-~~G~~gv~Lsk~lp~va~~~l~~ni~~l~p~vlp~~e~~~~~~~~i~~~~~~~~~~~~~pd~~~~~~hf~iHpGGra 368 (466)
T PLN00415 290 ED-SKGIVGVALSKELTVVAGDTLKTNLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPYVPDFKLCFKHFCIHAGGRA 368 (466)
T ss_pred ec-CCCcceEEEChHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhhccCCCCCCCccccceeEEecCCcHH
Confidence 11 00000 000011111111222222222211100 0 00001111 23 789999999999
Q ss_pred HHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhH
Q 012353 253 LVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASL 332 (465)
Q Consensus 253 m~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~ 332 (465)
+++.+.+.| +++++ +++||..+.+++|||+|+|+
T Consensus 369 VLdave~~L------------------------gL~~~----------------------~le~Sr~vL~r~GN~SSsSV 402 (466)
T PLN00415 369 LLDAVEKGL------------------------GLSEF----------------------DLEPSRMTLHRFGNTSSSSL 402 (466)
T ss_pred HHHHHHHHc------------------------CCCHH----------------------HHHHHHHHHHHhCCchhhhH
Confidence 999999888 55543 23445555599999999999
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 333 YAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 333 ~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
+..|..+..+ ++.++|+++++++||+|++++.+++++-.
T Consensus 403 ~yvL~~~~~~-~~~~~Gdrvl~iaFGpGf~~es~v~~~~~ 441 (466)
T PLN00415 403 WYELAYVEAK-CRVKRGDRVWQLAFGSGFKCNSIVWRALR 441 (466)
T ss_pred HHHHHHHHhh-ccCCCCCEEEEEEEcCcchhhHhHHHHhc
Confidence 9999999876 67889999999999999999999998865
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=252.48 Aligned_cols=306 Identities=17% Similarity=0.246 Sum_probs=223.5
Q ss_pred EEeEEEEecCCceechHHHHHhc----CCC-hhh----hh--hhhcCeEEecCCC---------------CCCHHHHHHH
Q 012353 6 GILAMDIYFPPTCVQQEALEAHD----GAS-KGK----YT--IGLGQECMAFCSE---------------VEDVISMSLT 59 (465)
Q Consensus 6 gI~~i~~y~P~~~v~~~~l~~~~----g~~-~~k----~~--~Gig~r~~av~~~---------------~Ed~~~la~~ 59 (465)
-|.+++.++|++.+.|.|+...+ ..+ -+. +. .+|..|+...|.+ -|.++.++++
T Consensus 3 ~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v~ 82 (356)
T COG3424 3 VIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGVD 82 (356)
T ss_pred eeeecccCCCccccchHHHHHHHHHhccccchHHHHHHHhhccccccceecccHhhccCCCChhhhhhhHHHHHHHHHHH
Confidence 58899999999999998775543 111 111 22 3455555443322 1458999999
Q ss_pred HHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHHcCCCCC
Q 012353 60 AVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVESSSWDG 138 (465)
Q Consensus 60 Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~sg~~~~ 138 (465)
|+++||+..++.|+|||+|+++|+|+.. .|++..+|+.+||+ ++++.-+-+. .||++|.+||..|.+|++++ |.
T Consensus 83 a~r~aL~~~~l~pedId~vv~vtsTG~~-~Ps~dari~~~Lgl--~p~~~Rvpv~glGCaaga~glara~~y~ra~--P~ 157 (356)
T COG3424 83 ALRRALDGSPLRPEDIDAVVTVTSTGLA-TPSLDARIVGELGL--SPDTRRVPVWGLGCAAGAAGLARARDYCRAA--PD 157 (356)
T ss_pred HHHHHhccCCCCHHHCcEEEEEeecccc-CCChhHHHHhhcCC--CCccceeeeecchhhhhhhHHHHHHHHHhhC--cc
Confidence 9999999999999999999999999975 89999999999999 7888888885 79999999999999999999 66
Q ss_pred CEEEEEEeccccc----cCCC--C---CcccccceeeeeecCCCCc----cccccccccccc---Ccccc--cccCCCCC
Q 012353 139 RYGLVVCTDSAVY----AEGP--A---RPTGGAAAVVMLVGPDAPV----AFESKLRGSHMS---HAYDF--YKPNLASE 200 (465)
Q Consensus 139 ~~aLVVasD~~~y----~~~~--~---~~t~GdGA~A~Ll~~~~~~----~~~~~~~~~~~~---~~~df--~~p~~~~~ 200 (465)
.+|||||.|.|+. .+.+ + ..+||||++|+|++.+.+. ...+.+.++.+. +..|. |--. ...
T Consensus 158 ~~vlvV~vELCSLt~~~~d~t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~~Mgwdv~-d~G 236 (356)
T COG3424 158 ANVLVVCVELCSLTYVFADDTKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSEDIMGWDVG-DQG 236 (356)
T ss_pred ceEEEEEeeeeeeeeecCCCCcccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCccccccceeec-CCc
Confidence 9999999999943 2221 1 3579999999999987541 111223444432 11111 1000 111
Q ss_pred CcccCCchhHHHHH-HHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhh
Q 012353 201 YPVVDGKLSQTCYL-MALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKE 279 (465)
Q Consensus 201 ~p~~dg~~s~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~ 279 (465)
+-.+-.+. +-.++ .-+...+..++... +++.+||+.|+.|.+++|++++..+.|
T Consensus 237 ~~~vlSrd-lp~lIe~~l~~~V~~fL~~~------~ls~~dI~~w~~HPGG~KVida~~~sL------------------ 291 (356)
T COG3424 237 LKVVLSRD-LPNLIESYLAPNVTTFLATH------GLSIEDIEAWVVHPGGPKVIDAYEESL------------------ 291 (356)
T ss_pred EEEEEcCc-hhHHHHHHhhhhHHHHHHHc------CCchhhhceeeeCCCCchHHHHHHHhc------------------
Confidence 11110000 01122 22344455555554 799999999999999999999999988
Q ss_pred ccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEecc
Q 012353 280 KLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGS 359 (465)
Q Consensus 280 ~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGs 359 (465)
|++++. + +.|+...+++|||.|||++..|...+++ . .++|.+.+++++|+
T Consensus 292 ------gls~e~------l----------------~~s~~~L~~~GNMSSatvLfVL~d~l~~-~-~~~g~~Gl~~A~GP 341 (356)
T COG3424 292 ------GLSPEA------L----------------ELSWDVLREYGNMSSATVLFVLEDTLQK-A-PKSGSRGLMFAMGP 341 (356)
T ss_pred ------CCCHHH------H----------------HHHHHHHHHhCCccchhhHHHHHHHHHh-c-CCCCcceeeeecCC
Confidence 666543 2 2233344999999999999999999998 2 57999999999999
Q ss_pred chheeeeEEEEeC
Q 012353 360 GLTATMFSLKLSE 372 (465)
Q Consensus 360 G~~~~~~~~~~~~ 372 (465)
|++.+..+++|..
T Consensus 342 Gf~sElvL~~w~~ 354 (356)
T COG3424 342 GFCSELVLLDWEG 354 (356)
T ss_pred cceeeeeeEEeec
Confidence 9999999999975
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=228.43 Aligned_cols=236 Identities=15% Similarity=0.086 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVE 132 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~ 132 (465)
..+|+.+|++++|+++|+++++||.|+++|+++....|+.+.+|+..||+ . +..++++.++|++++.||..|..+|+
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~--~-~~~~~~i~~~C~s~~~al~~A~~~i~ 83 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI--S-GGPAYSVNQACATGLTALALAVQQVQ 83 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC--C-CCCcceeccHhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999988789999999999997 3 78899999999999999999999999
Q ss_pred cCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecCCCCc-cc--c--cccccccccCcccccccCCCCCCcccCCc
Q 012353 133 SSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPV-AF--E--SKLRGSHMSHAYDFYKPNLASEYPVVDGK 207 (465)
Q Consensus 133 sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~~~~~-~~--~--~~~~~~~~~~~~df~~p~~~~~~p~~dg~ 207 (465)
+|.. ++|||+++|. .++||||+|+||++++.. .. . ....+...... +. ...
T Consensus 84 ~g~~--~~~lv~~~e~---------~~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~-----~~--~~~------ 139 (254)
T cd00327 84 NGKA--DIVLAGGSEE---------FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFD-----GA--SMV------ 139 (254)
T ss_pred CCCC--CEEEEEecce---------eeecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCC-----CC--CCC------
Confidence 9966 9999999998 689999999999986421 00 0 00111111100 00 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCC
Q 012353 208 LSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTL 287 (465)
Q Consensus 208 ~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i 287 (465)
...+.+.+.++++.++++. ++.++|+|++++|+++.++.+.+.+.+.+..
T Consensus 140 --~~~~~~~~~~~i~~~l~~a------g~~~~did~~~~h~~~~~~~~~~~~~~~~~~---------------------- 189 (254)
T cd00327 140 --PAVSGEGLARAARKALEGA------GLTPSDIDYVEAHGTGTPIGDAVELALGLDP---------------------- 189 (254)
T ss_pred --CCCChHHHHHHHHHHHHHc------CCCHHHCCEEEccCCcCccccHHHHHHHHHH----------------------
Confidence 0112345566666666665 7889999999999999999999887773211
Q ss_pred CCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCC-------CCCEEEEEEeccc
Q 012353 288 SGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSEL-------DGKRVVLFSYGSG 360 (465)
Q Consensus 288 ~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~-------~G~rill~syGsG 360 (465)
++.. . -+......++||+++||.++.|..++.. .+.. +|++++++++|.|
T Consensus 190 --~~~~-------------------~-~~~~~~~~~~G~~~~as~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~G 246 (254)
T cd00327 190 --DGVR-------------------S-PAVSATLIMTGHPLGAAGLAILDELLLM-LEHEFIPPTPREPRTVLLLGFGLG 246 (254)
T ss_pred --hCCC-------------------C-CceeccccccccchHHHHHHHHHHHHHH-HhCCCcCCCCCCcCEEEEeeEcCC
Confidence 1000 0 0111223799999999999999999876 3333 7999999999999
Q ss_pred hheeeeEE
Q 012353 361 LTATMFSL 368 (465)
Q Consensus 361 ~~~~~~~~ 368 (465)
.+++++++
T Consensus 247 g~~~~~~l 254 (254)
T cd00327 247 GTNAAVVL 254 (254)
T ss_pred CcceEEEC
Confidence 99988753
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=212.37 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHCCCC----cCCccEEEEEeecCCCC---------------------cccHHHHHHHHhcccCCCC
Q 012353 53 VISMSLTAVTNLLEKYKID----PKQIGRLEVGSETVIDK---------------------SKSIKTFLMQIFEKFGNTD 107 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~----~~~Id~li~~T~s~~~~---------------------~ps~a~~l~~~LGl~g~~~ 107 (465)
..+|++.|++++|+++|++ +++||.|+++|+++.+. .|+.+..|+..||+ +
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl----~ 86 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGI----H 86 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCC----C
Confidence 7899999999999999999 99999999999887764 67889999999997 4
Q ss_pred ceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc--cC--------------------CCCCccccccee
Q 012353 108 IEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY--AE--------------------GPARPTGGAAAV 165 (465)
Q Consensus 108 ~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y--~~--------------------~~~~~t~GdGA~ 165 (465)
.+++++.++|++++.||..|..+|++|.. +++||+++|.... .. .....++||||+
T Consensus 87 g~~~~v~~~cas~~~al~~A~~~i~~g~~--~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaa 164 (332)
T cd00825 87 GPAYDVSAACAGSLHALSLAADAVQNGKQ--DIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAG 164 (332)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEE
Confidence 56788899999999999999999999976 9999999998621 00 012356899999
Q ss_pred eeeecCCCCcc-----cccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012353 166 VMLVGPDAPVA-----FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (465)
Q Consensus 166 A~Ll~~~~~~~-----~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~d 240 (465)
|+||++.+... +...+.+..+. ..+..... + ....+.+.++++.++++. +++++|
T Consensus 165 A~vL~~~~~a~~~~~~~~~~i~~~~~~-----~~~~~~~~-~--------~~~~~~~~~~i~~al~~a------gl~~~d 224 (332)
T cd00825 165 ALVVEELEHALARGAHIYAEIVGTAAT-----IDGAGMGA-F--------APSAEGLARAAKEALAVA------GLTVWD 224 (332)
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEc-----cCCCCCCC-C--------CcCHHHHHHHHHHHHHHc------CCCHhH
Confidence 99999864310 00001111110 11110000 0 011234555666666665 799999
Q ss_pred CceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCccc
Q 012353 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLI 320 (465)
Q Consensus 241 id~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~ 320 (465)
||++++|+++.++.+.+.+++....+ +.. -.+...+
T Consensus 225 id~~~~h~~~~~~~~~~e~~~~~~~~-------------------~~~-------------------------~~~~~~~ 260 (332)
T cd00825 225 IDYLVAHGTGTPIGDVKELKLLRSEF-------------------GDK-------------------------SPAVSAT 260 (332)
T ss_pred CCEEEccCCCCCCCCHHHHHHHHHHh-------------------CCC-------------------------CceeECC
Confidence 99999999999988888776642211 000 0011122
Q ss_pred ccccCccchhhHHHHHHHHHHhcCCCC-------------------------CCCEEEEEEeccchheeeeEE
Q 012353 321 PKQVGNMYTASLYAALASLIHNKHSEL-------------------------DGKRVVLFSYGSGLTATMFSL 368 (465)
Q Consensus 321 ~~~~GN~~taS~~l~L~~ll~~~~~~~-------------------------~G~rill~syGsG~~~~~~~~ 368 (465)
..++||+++||.++.|...+.. .+.. +|++++++++|.|.+++++++
T Consensus 261 ~~~~G~~~aas~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 261 KAMTGNLSSAAVVLAVDEAVLM-LEHGFIPPSIHIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332 (332)
T ss_pred CcccccchhHhHHHHHHHHHHH-HhcCccCCCCCCCCCCcccCcccCCCCCCCCCEEEEeeecCCCeeEEEeC
Confidence 3799999999999999998765 2322 689999999999999988753
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=193.33 Aligned_cols=167 Identities=22% Similarity=0.305 Sum_probs=130.3
Q ss_pred CceeEEeEEEEecCCceechHHHHHhc----CCCh-----hhh-----hhhhcCeEEecCCC------------------
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHD----GASK-----GKY-----TIGLGQECMAFCSE------------------ 49 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~----g~~~-----~k~-----~~Gig~r~~av~~~------------------ 49 (465)
+....|.+||+.+|+++++|+++.+.. +.+. +++ ..||..|++.++.+
T Consensus 12 ~g~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~ 91 (226)
T PF00195_consen 12 PGPAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAE 91 (226)
T ss_dssp SSSEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHH
T ss_pred CCCeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHH
Confidence 356899999999999999999987752 3222 233 47999999876421
Q ss_pred -----CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHH
Q 012353 50 -----VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAA 123 (465)
Q Consensus 50 -----~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~A 123 (465)
.+....|+.+|++++|+++|++++||++||+.|+|+.. .|++..+|.++||| ++++.-+.+. .||+||+.|
T Consensus 92 R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~-~PglD~~l~~~LgL--~~~v~R~~i~~~GC~gg~~~ 168 (226)
T PF00195_consen 92 RNALYAEEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIA-APGLDARLINRLGL--RPDVQRTPIFGMGCAGGAAG 168 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSE-CS-HHHHHHHHHT----TTSEEEEEES-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcC-CCchhHHHHhcCCC--CCCcEEEEEeccchhhHHHH
Confidence 14578999999999999999999999999999999975 99999999999999 7888888886 799999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEecccc--cc-C-CCC------CcccccceeeeeecCCC
Q 012353 124 LFNCVNWVESSSWDGRYGLVVCTDSAV--YA-E-GPA------RPTGGAAAVVMLVGPDA 173 (465)
Q Consensus 124 L~~A~~~l~sg~~~~~~aLVVasD~~~--y~-~-~~~------~~t~GdGA~A~Ll~~~~ 173 (465)
|..|.++.+++ |+.+||||+.|.++ |. + ... ..+|||||+|+||+.+|
T Consensus 169 L~~A~~~~~~~--p~a~VLvv~vElcsl~~~~~~~~~~~~lv~~aLFgDGaAA~vv~~dP 226 (226)
T PF00195_consen 169 LRRAKDIARAN--PGARVLVVCVELCSLHFQAPNDDSLDNLVANALFGDGAAAVVVGADP 226 (226)
T ss_dssp HHHHHHHHHHS--TT-EEEEEEEEEGGGTHHHCCTTSHHHHHHHHHB-EEEEEEEEESS-
T ss_pred HHHHHHHHhCC--ccceEEEEEEEeeEEEEecCCcccHHHHhHHhhhcCCceEEEEccCC
Confidence 99999999999 78999999999995 32 1 111 25699999999999875
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-17 Score=164.23 Aligned_cols=303 Identities=14% Similarity=0.037 Sum_probs=192.3
Q ss_pred CCceeEEeEEEEecCCce------------echHHHHHhcCCC-hhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHH
Q 012353 1 MAKNVGILAMDIYFPPTC------------VQQEALEAHDGAS-KGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLL 65 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~------------v~~~~l~~~~g~~-~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL 65 (465)
|..+|.|.+++...|--. +++.+.....+.+ .+++ .+|+..+++ ...+....|+..|++++|
T Consensus 1 ~~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~r~~~La~~Al~~aL 77 (348)
T PRK06147 1 MMRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGAPVPLPPPW---RGPERLAEMAAPAIAEAL 77 (348)
T ss_pred CCCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEeecCcCCccc---CchHHHHHHHHHHHHHHH
Confidence 567899999999988765 2222223333332 3444 245555553 346788999999999999
Q ss_pred HHCC-CCcCCccEEEEEee-----cCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCC
Q 012353 66 EKYK-IDPKQIGRLEVGSE-----TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGR 139 (465)
Q Consensus 66 ~~ag-i~~~~Id~li~~T~-----s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~ 139 (465)
++++ +++++|+++++.++ ++.+..++.+..+++.||+ .....++++..+|.+++.||..|..+|++|.+ +
T Consensus 78 ~~a~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~--~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~--~ 153 (348)
T PRK06147 78 EGLPALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGL--RLEPGSAVIARGRVSGAVALAQARRLIAAGGC--P 153 (348)
T ss_pred HhcccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCC--CCCCCcccccccchHHHHHHHHHHHHHHcCCC--C
Confidence 9999 79999999998655 3445556778899999997 34456799999999999999999999999977 9
Q ss_pred EEEEEEeccccc-------c--------CCCCCcccccceeeeeecCCCCc-cccccccc-ccccCccccc-ccCCCCCC
Q 012353 140 YGLVVCTDSAVY-------A--------EGPARPTGGAAAVVMLVGPDAPV-AFESKLRG-SHMSHAYDFY-KPNLASEY 201 (465)
Q Consensus 140 ~aLVVasD~~~y-------~--------~~~~~~t~GdGA~A~Ll~~~~~~-~~~~~~~~-~~~~~~~df~-~p~~~~~~ 201 (465)
.+||+++|...- . +.....++|+||+++||++.+.. .-...+.+ .+..+ .+.+ ... . -
T Consensus 154 ~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~G~v~GEGA~a~vLe~~~~A~~rga~i~a~g~~~~-~~~~~~~~-~--~ 229 (348)
T PRK06147 154 RVLVAGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAAVLLGRPAGGEAPGLPLLGLGLGRE-PAPVGESE-D--L 229 (348)
T ss_pred EEEEEeeccccCHHHHHHHHHhhccCCCCCCCceeeeceEEEEEEccHhhhhcCCCceEEEEEeec-CCCcccCC-C--C
Confidence 999999997521 0 11223579999999999985421 00001111 11111 1111 110 0 0
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhcc
Q 012353 202 PVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKL 281 (465)
Q Consensus 202 p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 281 (465)
| .+| +.+.++++..+++. ++.++|||+++.|..+.+...+.....+ ... |...
T Consensus 230 p-~~g--------~gl~~ai~~AL~~a------gl~~~dId~v~ah~~gt~~~d~~e~~A~-~~~-----------f~~~ 282 (348)
T PRK06147 230 P-LRG--------DGLTQAIRAALAEA------GCGLEDMDYRIADLNGEQYRFKEAALAE-MRL-----------FRVR 282 (348)
T ss_pred C-CCh--------HHHHHHHHHHHHHc------CCCHHHCCEEEcCCCCCccchHHHHHHH-HHH-----------hhhc
Confidence 1 122 23445555555554 7899999999999987665443322110 000 0000
Q ss_pred CCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHh-cCCCCCCCEEEEEEeccc
Q 012353 282 GPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN-KHSELDGKRVVLFSYGSG 360 (465)
Q Consensus 282 ~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~-~~~~~~G~rill~syGsG 360 (465)
. ...+. ......+||+++|+-.+.++..+.. .....+|.+++++|-.-.
T Consensus 283 ~--~~~~~----------------------------~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~~~L~~s~~d~ 332 (348)
T PRK06147 283 K--EFFDL----------------------------WHPAECIGEIGAAIGPALLGVALAASRKGYGPGPNVLCHLSDDD 332 (348)
T ss_pred c--CCCce----------------------------ecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCCcEEEEecCCC
Confidence 0 00110 0112679999999988888764432 123568999999998765
Q ss_pred hheeeeEEEEe
Q 012353 361 LTATMFSLKLS 371 (465)
Q Consensus 361 ~~~~~~~~~~~ 371 (465)
-.-++++++-+
T Consensus 333 g~r~a~~l~~~ 343 (348)
T PRK06147 333 GARAALVLEYR 343 (348)
T ss_pred CceEEEEEecc
Confidence 55577777644
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=161.49 Aligned_cols=168 Identities=21% Similarity=0.311 Sum_probs=137.0
Q ss_pred CCceeEEeEEEEecCCc--eechHHHHHhcC----CChh------hh--hhhhcCeEEecCCC-------------CCCH
Q 012353 1 MAKNVGILAMDIYFPPT--CVQQEALEAHDG----ASKG------KY--TIGLGQECMAFCSE-------------VEDV 53 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~--~v~~~~l~~~~g----~~~~------k~--~~Gig~r~~av~~~-------------~Ed~ 53 (465)
.|.+|++...+.|-|+. .++.+.+.+... .+++ |+ +.|||++.+. |+. .+.+
T Consensus 5 R~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~eTy~-P~~~~~~p~~~s~~~a~~Ea 83 (290)
T PF08392_consen 5 RPRPVYLVDFACYKPPDELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDETYL-PPALHEIPPDPSLAAAREEA 83 (290)
T ss_pred CCCCEEEEeeeecCCCcccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCccccC-CcccccCCCcccHHHHHHHH
Confidence 36789999999999875 588888777542 2332 33 5899998753 321 1235
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVE 132 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~ 132 (465)
..++..|++++|+++|++|+|||.||+.+++. .+.||++++|.+++|+ ..++..+++. +||++|+.+|++|.++++
T Consensus 84 e~v~f~av~~LL~ktgv~p~dIdiLVvncs~f-~ptPSLsamIvnr~~m--r~di~~~nLsGMGCsAgliai~lA~~lL~ 160 (290)
T PF08392_consen 84 EMVIFGAVDDLLAKTGVKPSDIDILVVNCSLF-NPTPSLSAMIVNRYGM--RSDIKSYNLSGMGCSAGLIAIDLAKDLLQ 160 (290)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECcCC-CcCCcHHHHHHHHhCC--CcCeeeecccCCcchhhHHHHHHHHHHHH
Confidence 67888999999999999999999999877664 7799999999999999 7899999996 899999999999999999
Q ss_pred cCCCCCCEEEEEEecccccc--CCC------CCcccccceeeeeecCCCC
Q 012353 133 SSSWDGRYGLVVCTDSAVYA--EGP------ARPTGGAAAVVMLVGPDAP 174 (465)
Q Consensus 133 sg~~~~~~aLVVasD~~~y~--~~~------~~~t~GdGA~A~Ll~~~~~ 174 (465)
.+ |+.+||||++|+.... .++ ...+|++||+|+||+..+.
T Consensus 161 ~~--p~~~ALVVstE~~s~~~Y~G~~rsmlv~NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 161 AH--PNSYALVVSTENISANWYRGNDRSMLVSNCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred hC--CCcEEEEEEEeecccccccCCcHHHhhccccccCCceeEEeecCcc
Confidence 99 7799999999998421 222 2467999999999998864
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-17 Score=133.03 Aligned_cols=88 Identities=24% Similarity=0.331 Sum_probs=73.4
Q ss_pred cCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhh
Q 012353 233 GKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDA 312 (465)
Q Consensus 233 ~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~ 312 (465)
++|++++|||++++||++.++.+...+.+ +++.++.+. ++
T Consensus 3 ~~g~~~~did~~i~hq~~~~~~~~~~~~l------------------------gi~~~~~~~---------~~------- 42 (90)
T PF08541_consen 3 RAGLSPDDIDHFIPHQASKKILDSIAKRL------------------------GIPPERFPD---------NL------- 42 (90)
T ss_dssp HTT--GGGESEEEE-SSSHHHHHHHHHHH------------------------TS-GGGBE----------TH-------
T ss_pred cccCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CCcHHHHHH---------HH-------
Confidence 45899999999999999999999988887 788776652 34
Q ss_pred ccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 313 KVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 313 ~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
+++||++++|+|++|++++++ +++++||+|+++++|+|+++++++++|
T Consensus 43 ---------~~~Gn~~sa~~~~~L~~~~~~-g~~~~Gd~vl~~~~G~G~~~~~~~~~~ 90 (90)
T PF08541_consen 43 ---------AEYGNTGSASIPINLADALEE-GRIKPGDRVLLVGFGAGFSWGAAVLRW 90 (90)
T ss_dssp ---------HHH-B-GGGHHHHHHHHHHHT-TSSCTTEEEEEEEEETTTEEEEEEEE-
T ss_pred ---------hccCcchhhhHHHHHHHHHHc-CCCCCCCEEEEEEEEhhheeEEEEEEC
Confidence 899999999999999999999 789999999999999999999999987
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=145.86 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
++...+|+.+|+++||+++|++++|||.|++++. +. .+..+.++++.||+ +.+++.+||+++..||.+|..
T Consensus 47 EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl-~~--Q~~~As~vA~~LGI------P~fdV~~ACSTf~~AL~lAa~ 117 (327)
T TIGR02845 47 EKAERKLMEDAVNLALKKANLKKDDVDFFLAGDL-LN--QIITANFVARDLGI------PFLGLYGACSTSMETLALGAM 117 (327)
T ss_pred chhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCC-CC--cccHHHHHHHHhCC------CEEEEeccCHHHHHHHHHHHH
Confidence 4577899999999999999999999999999873 32 34578899999995 359999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc-------cc-CC-----CCCcccccceeeeeecCCC
Q 012353 130 WVESSSWDGRYGLVVCTDSAV-------YA-EG-----PARPTGGAAAVVMLVGPDA 173 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~-------y~-~~-----~~~~t~GdGA~A~Ll~~~~ 173 (465)
+|++|.+ ++||||+|+... |. ++ +.-.+|||||+|+||++..
T Consensus 118 lI~SG~a--d~VLVV~Ssh~S~AErqfr~p~eyg~q~~~ta~~tgdGAGA~vl~~~~ 172 (327)
T TIGR02845 118 LVDGGFA--DRVLAATSSHYATAERQFRYPTEYGVQKPPTAQWTVTGAGAVLLASTG 172 (327)
T ss_pred HHhCCCC--CEEEEEEecccchhhhhcccccccccCCCCeeeEEEcccEEEEEeecC
Confidence 9999977 999999998763 32 22 1234699999999999874
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-14 Score=136.84 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
++...+|+.+|++++|+++|++++|||.|++++.. ..+..+.++++.||+ +++++.++|+++..||.+|..
T Consensus 53 EkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll---~Q~~sAs~vA~~LGI------Pa~dV~gACST~~~AL~lAa~ 123 (337)
T PRK08304 53 EKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLL---NQIISANFAARELGI------PFLGLYGACSTMMESLALGSM 123 (337)
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCC---CCcchHHHHHHHhCC------cEEEEeccCHHHHHHHHHHHH
Confidence 55678999999999999999999999999999752 134678899999984 589999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc-------cccC--C----CCCcccccceeeeeecCCC
Q 012353 130 WVESSSWDGRYGLVVCTDSA-------VYAE--G----PARPTGGAAAVVMLVGPDA 173 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~-------~y~~--~----~~~~t~GdGA~A~Ll~~~~ 173 (465)
+|++|.+ ++||||+|+.. +|.. + +.-..+++||.|+||++..
T Consensus 124 lI~SG~a--d~VLVV~Ssh~s~aerqfr~P~eyg~qrp~taqwtvtGAGA~i~~~~~ 178 (337)
T PRK08304 124 LIDGGFA--DRVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAVLLSREG 178 (337)
T ss_pred HHhcCCC--CEEEEEEcchhhhhhhhccCchhccccCCCcceEEeeccEEEEEecCC
Confidence 9999977 99999999986 2321 1 2234579999999999875
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-13 Score=138.16 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCcCCccE----EEEEeecCCC--------------------------CcccHHHHHHHHhc
Q 012353 52 DVISMSLTAVTNLLEKYKIDPKQIGR----LEVGSETVID--------------------------KSKSIKTFLMQIFE 101 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~~Id~----li~~T~s~~~--------------------------~~ps~a~~l~~~LG 101 (465)
....|++.|++++|+++|+++++||. +++++.++.. ..+..+.+|+..||
T Consensus 70 ~~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 149 (406)
T cd00834 70 RFAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLG 149 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhC
Confidence 35689999999999999999876664 5666655321 12457788999999
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc--c-----------cC--------------C
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV--Y-----------AE--------------G 154 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~--y-----------~~--------------~ 154 (465)
+ +..++.+..+|++++.||..|..+|++|.+ +.|||+++|... + .. .
T Consensus 150 l----~g~~~~v~~acas~~~Al~~A~~~i~~G~~--d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~ 223 (406)
T cd00834 150 L----RGPNYTVSTACASGAHAIGDAARLIRLGRA--DVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKD 223 (406)
T ss_pred C----CCcccccchHHHHHHHHHHHHHHHHHcCCC--CEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCC
Confidence 7 235678889999999999999999999987 999999999763 0 00 0
Q ss_pred CCCcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhh
Q 012353 155 PARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE 229 (465)
Q Consensus 155 ~~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~ 229 (465)
....++||||+|+||++.+.. .+...+.+.... .|.+... .|..++ ..+.+++++.+++.
T Consensus 224 ~~g~~~geGA~a~vL~~~~~A~~~g~~~~a~i~g~~~~--~d~~~~~----~~~~~~--------~~~~~~i~~al~~a- 288 (406)
T cd00834 224 RDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGAS--SDAYHIT----APDPDG--------EGAARAMRAALADA- 288 (406)
T ss_pred CCCEeeeccEEEEEEecHHHHHHCCCeEEEEEEEEEec--ccCCCCC----CCCCCc--------HHHHHHHHHHHHHc-
Confidence 112468999999999875421 010012222111 1111100 011112 22333444444444
Q ss_pred hhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 230 KLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 230 ~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
++.++|||++.+|..++...+..
T Consensus 289 -----gi~~~dId~v~~h~tgt~~~d~~ 311 (406)
T cd00834 289 -----GLSPEDIDYINAHGTSTPLNDAA 311 (406)
T ss_pred -----CCCHHHCCEEecccccCccccHH
Confidence 78999999999999888766554
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=133.38 Aligned_cols=176 Identities=18% Similarity=0.164 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHCCCCcCCcc----EEEEEeecCCCC-------------------cccHHHHHHHHhcccCCCCcee
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIG----RLEVGSETVIDK-------------------SKSIKTFLMQIFEKFGNTDIEG 110 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id----~li~~T~s~~~~-------------------~ps~a~~l~~~LGl~g~~~~~~ 110 (465)
..|++.|++++|+++|+++++|| .|++++.++.+. .+..+..|+..||+. .++
T Consensus 88 ~~l~~~aa~~Al~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl~----g~~ 163 (424)
T smart00825 88 QRLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLR----GPS 163 (424)
T ss_pred HHHHHHHHHHHHHHcCCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCCC----CCc
Confidence 45999999999999999999998 788888765432 345677899999972 256
Q ss_pred EeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------------c-c-CC--------CCCcccccceeeee
Q 012353 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------------Y-A-EG--------PARPTGGAAAVVML 168 (465)
Q Consensus 111 ~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------------y-~-~~--------~~~~t~GdGA~A~L 168 (465)
+.+..+|++++.||..|..+|++|.+ +.|||+++|... + . .. .+..++||||+|+|
T Consensus 164 ~~v~~acasg~~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAaalV 241 (424)
T smart00825 164 VTVDTACSSSLVALHLACQSLRSGEC--DMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVVV 241 (424)
T ss_pred cccccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeecCCHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceEEEEE
Confidence 88899999999999999999999987 999999999631 0 0 00 12345799999999
Q ss_pred ecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCce
Q 012353 169 VGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY 243 (465)
Q Consensus 169 l~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~ 243 (465)
|++.... .+...+.+..... |-... ....| ++ ..+..+++..+++. |+.++|||+
T Consensus 242 Le~~e~A~~~g~~i~a~I~g~~~~~--~~~~~--~~~~~--~~--------~~~~~a~~~al~~A------gl~~~dId~ 301 (424)
T smart00825 242 LKRLSDALRDGDPILAVIRGSAVNQ--DGRSN--GLTAP--SG--------PAQARLIRQALARA------GVDPADVDY 301 (424)
T ss_pred EccHHHHHHCCCeEEEEEEEEEEeC--CCCCC--CCCCc--CH--------HHHHHHHHHHHHHh------CCCHHHccE
Confidence 9975321 0000012221110 10000 00001 11 12223444444444 789999999
Q ss_pred eeccCCchHHHH
Q 012353 244 FVFHSPYNKLVQ 255 (465)
Q Consensus 244 ~~~H~p~~km~~ 255 (465)
+..|..+++..+
T Consensus 302 i~~h~tgt~~~d 313 (424)
T smart00825 302 VEAHGTGTPLGD 313 (424)
T ss_pred EEeeCCCCCCCC
Confidence 999987776433
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-12 Score=128.16 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=91.1
Q ss_pred hhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcC
Q 012353 38 GLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNAC 117 (465)
Q Consensus 38 Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC 117 (465)
|+|+..+.- ..+.+..+|+++|++++|+++|+++++||.|++++..+....+..+..++..||+ +.+.++++.++|
T Consensus 2 G~g~t~~~~-~~~~~~~eL~~~A~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl---~~~~~~~v~~~c 77 (375)
T cd00829 2 GVGMTPFGR-RSDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGL---LGKPATRVEAAG 77 (375)
T ss_pred eeeecCccc-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecccccccccchHHHHHHHcCC---CCcceeeEeCcc
Confidence 556555432 2377899999999999999999999999999999887655456788999999997 477899999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 118 YGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 118 ~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
.++..+|..|..+|++|.+ +.|||+++|..
T Consensus 78 ~sg~~al~~Aa~~I~sG~~--~~vlv~g~e~~ 107 (375)
T cd00829 78 ASGSAAVRAAAAAIASGLA--DVVLVVGAEKM 107 (375)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEEEEEeec
Confidence 9999999999999999976 99999999964
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=127.54 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCc-ccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS-KSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~-ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+++..+|+.+|++++|+++|++|++||.|++++.++.... +..+..+...+|+ ..++++++++++|++|..|+..|
T Consensus 23 ~~~~~~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~V~~aCaSg~~Al~~A 100 (394)
T PRK09051 23 KDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGV--PQETPAFNVNRLCGSGLQAIVSA 100 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCC--CCCCceEEecccchHHHHHHHHH
Confidence 47789999999999999999999999999999998875543 3455566677787 44688999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..+|++|.+ +.|||+++|..+
T Consensus 101 ~~~I~sG~~--d~vLvvG~E~mS 121 (394)
T PRK09051 101 AQAILLGDA--DVAIGGGAESMS 121 (394)
T ss_pred HHHHHcCCC--CEEEEEeehhcc
Confidence 999999977 999999999763
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-11 Score=122.54 Aligned_cols=105 Identities=22% Similarity=0.163 Sum_probs=88.1
Q ss_pred hhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC--cccHHHHHHHHhcccCCCCceeEeecC
Q 012353 38 GLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK--SKSIKTFLMQIFEKFGNTDIEGVDSTN 115 (465)
Q Consensus 38 Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~--~ps~a~~l~~~LGl~g~~~~~~~di~~ 115 (465)
|.++..+. ...+++..+|+++|++++|+++|+++++||.|++++.++... .+..+..++..||+ +.+.++++.+
T Consensus 8 G~~~tp~~-~~~~~~~~eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl---~~~~~~~v~~ 83 (389)
T PRK06064 8 GVGQTKFG-ELWDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGL---APIPATRVEA 83 (389)
T ss_pred Ecccccce-ecCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccccccHHHHHHHHcCC---CCCCeeEEeC
Confidence 45544332 124678999999999999999999999999999988765442 36678889999997 3577899999
Q ss_pred cChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 116 ACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 116 aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
+|.+++.||..|..+|++|.+ +.|||+++|.
T Consensus 84 aCasg~~ai~~A~~~I~sG~~--~~vLv~G~e~ 114 (389)
T PRK06064 84 ACASGGAALRQAYLAVASGEA--DVVLAAGVEK 114 (389)
T ss_pred CcHHHHHHHHHHHHHHHCCCC--CEEEEEEEEe
Confidence 999999999999999999977 9999999985
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=113.99 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
++...+|+.+|++.||+++|++++|||.+++++.+. ...| ++++++.||+ + .+++.+||+++..||.+|..
T Consensus 51 EkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGdL~n-Q~ip--ssfvar~LGI---P---~~gV~gACSTg~eAL~lAa~ 121 (334)
T PRK12404 51 EKAERKLLEEACSRAIEKAKLRKEDIQFFLAGDLMN-QITP--TSFAARTLGI---P---YLGLFGACSTSMEGLALAAL 121 (334)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCC-CcCc--HHHHHHHhCC---C---ccceeecCHHHHHHHHHHHH
Confidence 455678999999999999999999999999998882 3333 4599999985 3 48999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc-------cccC--CCCCc-c---cccceeeeeecCCC
Q 012353 130 WVESSSWDGRYGLVVCTDSA-------VYAE--GPARP-T---GGAAAVVMLVGPDA 173 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~-------~y~~--~~~~~-t---~GdGA~A~Ll~~~~ 173 (465)
+|++|.+ ++|||++|-.. +|.. +.-+| | -=-||.|+||++..
T Consensus 122 ~VaSG~A--d~VLavtsSH~~~aErqfR~P~eyG~Qrp~taqwTvTgaga~~l~~~~ 176 (334)
T PRK12404 122 IVNSGGA--KYVLTGASSHNAAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAILSKTG 176 (334)
T ss_pred HHHcCCC--CEEEEEeCcccchhhhhccCcccccCcCCCcccEEEEceEEEEEecCC
Confidence 9999987 99999998764 3321 11121 1 13456688898764
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-10 Score=118.61 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCcCC-cc----EEEEEeecCC----------------------CCc--ccHHHHHHHHhcc
Q 012353 52 DVISMSLTAVTNLLEKYKIDPKQ-IG----RLEVGSETVI----------------------DKS--KSIKTFLMQIFEK 102 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~~-Id----~li~~T~s~~----------------------~~~--ps~a~~l~~~LGl 102 (465)
....|++.|++++|+++|+++++ ++ .++++|..+. ... ...+..|...||+
T Consensus 71 ~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T cd00828 71 RTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLS 150 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHhCc
Confidence 45678999999999999998755 33 2455554321 111 3567788999986
Q ss_pred cCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------c------c-C-----CC--------C
Q 012353 103 FGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y------A-E-----GP--------A 156 (465)
Q Consensus 103 ~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------y------~-~-----~~--------~ 156 (465)
...+++.+..+|++++.||..|..+|++|.+ +.+||+++|... | . . .. .
T Consensus 151 ---~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~ 225 (407)
T cd00828 151 ---SHGPIKTPVGACATALEALDLAVEAIRSGKA--DIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDETRD 225 (407)
T ss_pred ---CCCCCcCcccHHHHHHHHHHHHHHHHHcCCC--CEEEEccccccChHHHHHHHHcCCCCCCCCCCCcccCCCcCCCC
Confidence 2345688899999999999999999999987 999999999753 1 0 0 01 1
Q ss_pred CcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh
Q 012353 157 RPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL 231 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~ 231 (465)
..+.|+||+++||++.+.. .+...+.|.... .|-.. .. .+. ++ +.+.++++..+++.
T Consensus 226 G~~~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~--~d~~~---~~-~~~-~~--------~~~~~a~~~Al~~A--- 287 (407)
T cd00828 226 GFVEAEGAGVLVLERAELALARGAPIYGRVAGTAST--TDGAG---RS-VPA-GG--------KGIARAIRTALAKA--- 287 (407)
T ss_pred cEEeecceEEEEEeeHHHHHHCCCeEEEEEEEEEec--cCCCC---CC-CCC-Ch--------HHHHHHHHHHHHHc---
Confidence 2357999999999985321 010011222111 11000 00 011 12 23334445454544
Q ss_pred hcCCCCCCCCceeeccCCchHHHHHH
Q 012353 232 EGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 232 ~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
++.++|||++..|..++...+.+
T Consensus 288 ---gi~~~dId~i~~hgtgt~~~D~~ 310 (407)
T cd00828 288 ---GLSLDDLDVISAHGTSTPANDVA 310 (407)
T ss_pred ---CCCHHHcCEEecccccCccccHH
Confidence 78999999999999888765554
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=124.46 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccE----EEEEeecCCCC-------------------cccHHHHHHHHhcccCCCCce
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGR----LEVGSETVIDK-------------------SKSIKTFLMQIFEKFGNTDIE 109 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~T~s~~~~-------------------~ps~a~~l~~~LGl~g~~~~~ 109 (465)
...|++.|++++|+++|+++++++. |++++.++.+. .+..+..+...||+ ..+
T Consensus 87 ~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl----~g~ 162 (421)
T cd00833 87 QQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDL----RGP 162 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCC----CCC
Confidence 4789999999999999999888774 77777654320 13467789999997 236
Q ss_pred eEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c---------------cCCCCCcccccceeee
Q 012353 110 GVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------------AEGPARPTGGAAAVVM 167 (465)
Q Consensus 110 ~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y---------------~~~~~~~t~GdGA~A~ 167 (465)
++.+..+|++++.||..|..+|++|.+ +.+||+++|... + .......++||||+|+
T Consensus 163 ~~~v~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAaal 240 (421)
T cd00833 163 SLTVDTACSSSLVALHLACQSLRSGEC--DLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVV 240 (421)
T ss_pred ceeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeccCCHHHHHHHhhCCCCCCCCCCCCCCCCCCCeeeeceEEEE
Confidence 788899999999999999999999987 999999999742 0 0011235689999999
Q ss_pred eecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012353 168 LVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242 (465)
Q Consensus 168 Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did 242 (465)
||++.+.. .+...+.+.... .|.+... ...| + .+.+..+++..+++. |+.++|||
T Consensus 241 vL~~~~~A~~~g~~~~a~i~g~~~~--~~~~~~~--~~~p--~--------~~~~~~a~~~al~~A------gi~~~did 300 (421)
T cd00833 241 VLKRLSDALRDGDRIYAVIRGSAVN--QDGRTKG--ITAP--S--------GEAQAALIRRAYARA------GVDPSDID 300 (421)
T ss_pred EEeeHHHHHHCCCeEEEEEEEEEEc--CCCCCCC--CcCC--C--------HHHHHHHHHHHHHHh------CCCHHHCc
Confidence 99975321 000011222111 1111100 0001 1 123334555555554 78999999
Q ss_pred eeeccCCchHHHHH
Q 012353 243 YFVFHSPYNKLVQK 256 (465)
Q Consensus 243 ~~~~H~p~~km~~~ 256 (465)
++.+|..++...+.
T Consensus 301 ~i~~hgtgt~~~D~ 314 (421)
T cd00833 301 YVEAHGTGTPLGDP 314 (421)
T ss_pred EEEeeCCCCCCCCH
Confidence 99999988765543
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=113.67 Aligned_cols=228 Identities=15% Similarity=0.099 Sum_probs=134.3
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeE---EecCCC-----CCCHHHHHHHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQEC---MAFCSE-----VEDVISMSLTAVTNLLEK 67 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~---~av~~~-----~Ed~~~la~~Aa~~aL~~ 67 (465)
|.|.|.++|+..|--. +.+++.+.. |.+ + .++. .++..+. +-+.+. ......|++.|++++|++
T Consensus 11 ~~VvITG~G~vs~~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~aa~~Al~d 89 (425)
T PRK06501 11 PIVAVTGMGVVTSLGQ-GKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPESPFGASALSEALARLAAEEALAQ 89 (425)
T ss_pred cCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccccccccCHHHHHHHHHHHHHHHH
Confidence 3599999999998765 556554442 221 1 1110 1111100 000000 112356889999999999
Q ss_pred CCCCcCCcc------------------EEEEEeecC---------------CC-------CcccHHHHHHHHhcccCCCC
Q 012353 68 YKIDPKQIG------------------RLEVGSETV---------------ID-------KSKSIKTFLMQIFEKFGNTD 107 (465)
Q Consensus 68 agi~~~~Id------------------~li~~T~s~---------------~~-------~~ps~a~~l~~~LGl~g~~~ 107 (465)
+|+++.+++ .++.++... .. ..++.+..|+..||+ +
T Consensus 90 Agl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl----~ 165 (425)
T PRK06501 90 AGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAARGGRFDALHERFQFGSIADRLADRFGT----R 165 (425)
T ss_pred cCCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhcCcccCChhhhhhcccHHHHHHHHHhCC----C
Confidence 998643321 122222111 11 234688899999997 3
Q ss_pred ceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc---------------c-ccCC-----------CCCccc
Q 012353 108 IEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA---------------V-YAEG-----------PARPTG 160 (465)
Q Consensus 108 ~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~---------------~-y~~~-----------~~~~t~ 160 (465)
..++++..+|++++.||..|..+|++|.+ +.+||+++|.. . ..+. ....++
T Consensus 166 G~~~~i~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r~G~v~ 243 (425)
T PRK06501 166 GLPISLSTACASGATAIQLGVEAIRRGET--DRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDRDGFVM 243 (425)
T ss_pred CCceeecCccHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCCCCeee
Confidence 45689999999999999999999999987 99999999941 0 0111 112468
Q ss_pred ccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 012353 161 GAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ 235 (465)
Q Consensus 161 GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~ 235 (465)
|+||+|+||++.... .+...+.++... ...+... .+..++. .+..++++.+++. +
T Consensus 244 GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~-~d~~~~~-----~~~~~~~--------~~~~ai~~AL~~a------g 303 (425)
T PRK06501 244 AEGAGALVLESLESAVARGAKILGIVAGCGEK-ADSFHRT-----RSSPDGS--------PAIGAIRAALADA------G 303 (425)
T ss_pred eccEEEEEECcHHHHHHCCCeEEEEEEEEEEc-cCCCCCC-----CCCCCHH--------HHHHHHHHHHHHc------C
Confidence 999999999985321 111111122111 0111111 0111221 2334444444443 7
Q ss_pred CCCCCCceeeccCCchHHHHHH
Q 012353 236 FSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 236 ~~~~did~~~~H~p~~km~~~~ 257 (465)
+.++|||++.+|..++.....+
T Consensus 304 i~p~dId~i~~Hgtgt~~~d~~ 325 (425)
T PRK06501 304 LTPEQIDYINAHGTSTPENDKM 325 (425)
T ss_pred CCHHHcCEEEecCccCcchHHH
Confidence 8999999999999988876654
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=126.59 Aligned_cols=97 Identities=10% Similarity=0.126 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+++..+|+++|++++|+++|++++|||.|++++.++....|..+..++..||+ ..++.++++.++|.+++.||.+|.
T Consensus 18 ~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl--~~~~~~~~v~~~c~s~~~al~~A~ 95 (386)
T cd00751 18 KDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGL--PESVPATTVNRVCGSGLQAVALAA 95 (386)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCCchhhhccccHHHHHHHHHHH
Confidence 368899999999999999999999999999999887766677778889999997 345789999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~ 149 (465)
.+|++|.+ +.|||+++|..
T Consensus 96 ~~I~sG~~--~~vLv~g~e~~ 114 (386)
T cd00751 96 QSIAAGEA--DVVVAGGVESM 114 (386)
T ss_pred HHHHCCCC--CeEEEeeeecc
Confidence 99999987 99999999975
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-11 Score=124.04 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+++..+|+.+|++++|+++|++++|||.|++++.++....|..+..++..+|+ ..++.++++.++|++++.||..|..
T Consensus 18 ~~t~~~La~~A~~~Al~dAgl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl--~~~~~~~~v~~~Casg~~al~~A~~ 95 (386)
T TIGR01930 18 DVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNIARQAALLAGL--PESVPAYTVNRQCASGLQAVILAAQ 95 (386)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCceeeeecchhhHHHHHHHHHHH
Confidence 58899999999999999999999999999999887665557778889999997 3457899999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc
Q 012353 130 WVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~ 149 (465)
+|++|.+ +.|||+++|..
T Consensus 96 ~I~sG~~--~~vLv~g~e~~ 113 (386)
T TIGR01930 96 LIRAGEA--DVVVAGGVESM 113 (386)
T ss_pred HHHCCCC--CEEEEEEehhh
Confidence 9999987 99999999975
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=113.60 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccE----EEEEeecCCC-----------------Ccc---------cHHHHHHHHhcc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGR----LEVGSETVID-----------------KSK---------SIKTFLMQIFEK 102 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~T~s~~~-----------------~~p---------s~a~~l~~~LGl 102 (465)
...|++.|++++|+++|+++++||. +++++..+.. ..| ..+.+|...||+
T Consensus 71 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T TIGR03150 71 FIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGA 150 (407)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCC
Confidence 3679999999999999999988886 6677643211 011 245678888887
Q ss_pred cCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc----------------ccCC-----------C
Q 012353 103 FGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV----------------YAEG-----------P 155 (465)
Q Consensus 103 ~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~----------------y~~~-----------~ 155 (465)
. ...+.+..+|++++.||..|..+|++|.+ +.+||+++|... +... .
T Consensus 151 ~----g~~~~v~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~ 224 (407)
T TIGR03150 151 K----GPNHAVVTACATGTHAIGDAFRLIQRGDA--DVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDR 224 (407)
T ss_pred C----CcccccccHHHHHHHHHHHHHHHHhcCCC--CEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCC
Confidence 2 34566778999999999999999999977 999999999621 1000 0
Q ss_pred CCcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhh
Q 012353 156 ARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK 230 (465)
Q Consensus 156 ~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~ 230 (465)
...+.||||+|+||.+.+.. .+...+.+.... .|-+... -|..++. ....+++..+++.
T Consensus 225 ~g~~~gEGAaalvL~~~~~A~~~g~~i~a~i~g~~~~--~d~~~~~----~~~~~~~--------~~~~ai~~Al~~A-- 288 (407)
T TIGR03150 225 DGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMS--GDAYHIT----APAPEGE--------GAARAMRAALKDA-- 288 (407)
T ss_pred CcEEEeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEC--CCCCCCC----CCCCCcH--------HHHHHHHHHHHHc--
Confidence 12457999999999875421 000012222111 1111100 0111221 1223444444443
Q ss_pred hhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 231 LEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 231 ~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
+++++|||++..|-.++...+.+
T Consensus 289 ----gi~~~dId~ve~h~tgt~~~D~~ 311 (407)
T TIGR03150 289 ----GINPEDVDYINAHGTSTPLGDKA 311 (407)
T ss_pred ----CCCHhHCCEEeCcCCCCCCCCHH
Confidence 78999999999999998554443
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.3e-10 Score=113.85 Aligned_cols=94 Identities=10% Similarity=0.114 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcc---cHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSK---SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFN 126 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~p---s~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~ 126 (465)
+.+..+|+.+|++++|+++|++|++||.|++++..+....+ +....+...++ .+++++++.++|++|..|+..
T Consensus 29 ~~~~~~L~~~a~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~~----~~~p~~~V~~~CaSg~~ai~~ 104 (394)
T PRK06445 29 NIRPEELAAMLINRLIEKTGIKPEEIDDIITGCALQVGENWLYGGRHPIFLARLP----YNIPAMAVDRQCASSLTTVSI 104 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCCC----CCCcchhhhhhhHHHHHHHHH
Confidence 56799999999999999999999999999999988754323 22222333332 468899999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|...|++|.+ +.|||+++|..
T Consensus 105 A~~~I~sG~~--d~vLv~G~e~m 125 (394)
T PRK06445 105 GAMEIATGMA--DIVIAGGVEHM 125 (394)
T ss_pred HHHHHHcCCC--CEEEEeeeccc
Confidence 9999999987 99999999955
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=112.06 Aligned_cols=104 Identities=22% Similarity=0.139 Sum_probs=81.6
Q ss_pred hhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcC
Q 012353 38 GLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNAC 117 (465)
Q Consensus 38 Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC 117 (465)
|.++..+.-....++..+|++.|++++|+++|+++++||.+++++..+.... ...+...+|+ ..++++++..+|
T Consensus 7 G~~~t~~~~~~~~~~~~~La~~A~~~Al~dAGl~~~dID~~~~g~~~~~~~~---~~~~~~~lGl---~~~~~~~v~~~c 80 (391)
T PRK08256 7 GVGMTPFEKPGASWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTS---GQRALYEVGM---TGIPIVNVNNNC 80 (391)
T ss_pred eccccccccCCCCCCHHHHHHHHHHHHHHHcCCChHHCCeeEEEEEeCCcch---hHHHHHHcCC---CCCCCccccccc
Confidence 4554444321124678999999999999999999999999999877654322 2245667886 446678899999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 118 YGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 118 ~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
.+++.||..|..+|++|.+ +.|||+++|..
T Consensus 81 aSg~~ai~~A~~~I~sG~~--d~vLv~g~e~~ 110 (391)
T PRK08256 81 STGSTALFLARQAVRSGAA--DCALALGFEQM 110 (391)
T ss_pred HHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 9999999999999999987 99999887753
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-11 Score=120.91 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=89.8
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCc
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~a 116 (465)
.|+|+..+.- ..+++..+|+++|++++|+++|+++++||.||+++.++....+..+..++..||+ ++..++++.++
T Consensus 6 vG~g~t~~~~-~~~~~~~eLa~~A~~~AL~dAgi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl---~~~~~~~v~~~ 81 (385)
T PRK12578 6 IGVGNSKFGR-RDDVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGL---TGKVPLRVEAM 81 (385)
T ss_pred Eeecccceee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccCChHHHHHHHhCC---CCCCeeEEecc
Confidence 4667665432 3578899999999999999999999999999999877643233457789999997 44567999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 117 C~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|.+++.||..|...|++|.+ +.||||++|..
T Consensus 82 casg~~al~~A~~~I~sG~~--~~vLvvg~e~~ 112 (385)
T PRK12578 82 CATGLAASLTAYTAVASGLV--DMAIAVGVDKM 112 (385)
T ss_pred CHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 99999999999999999977 99999999874
|
|
| >PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-11 Score=105.45 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCcccc
Q 012353 215 MALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQ 294 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 294 (465)
+.+...+..++++. ++...|+.+|++|++++++++.+.+.| +++.+
T Consensus 40 ~~i~~~~~~~L~~~------g~~~~~~~~wavHPGG~~ILd~v~~~L------------------------~L~~~---- 85 (151)
T PF02797_consen 40 DNIPPFVEDLLARH------GLSDWDILFWAVHPGGRKILDAVEEAL------------------------GLSPE---- 85 (151)
T ss_dssp HHHHHHHHHHHHGG------TCCSGGGSEEEEE-SSHHHHHHHHHHH------------------------TS-GG----
T ss_pred HHHHHHHHHHHhhh------cccccccceeeecCChHHHHHHHHHHc------------------------CCCHH----
Confidence 45666777777665 555446668999999999999999998 66654
Q ss_pred chhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHh---cCCCC---CCCEEEEEEeccchheeeeEE
Q 012353 295 SRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN---KHSEL---DGKRVVLFSYGSGLTATMFSL 368 (465)
Q Consensus 295 d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~---~~~~~---~G~rill~syGsG~~~~~~~~ 368 (465)
++++|..+.+++|||+|++++..|..+++. .+... .++++++++||+|++.+++++
T Consensus 86 ------------------~l~~Sr~vLr~yGNmSSaTVlfVL~~~~~~~~~~g~~~~~~g~~~gv~~afGPG~t~E~~lL 147 (151)
T PF02797_consen 86 ------------------QLRASREVLREYGNMSSATVLFVLERMRRKSAEEGAPPPGEGGEWGVMLAFGPGLTIEGMLL 147 (151)
T ss_dssp ------------------GGHHHHHHHHHH-B-GGGHHHHHHHHHHHHHHHTTTSBTTTTBSEEEEEEEETTTEEEEEEE
T ss_pred ------------------HHHHHHHHHHhcCCCCCcchHHHHHHHHhhhhhhcccCCCCCCCeEEEEEECCcceEeeEEE
Confidence 344555566999999999999999999882 12222 248999999999999999999
Q ss_pred EEe
Q 012353 369 KLS 371 (465)
Q Consensus 369 ~~~ 371 (465)
+-.
T Consensus 148 r~~ 150 (151)
T PF02797_consen 148 RSV 150 (151)
T ss_dssp EE-
T ss_pred eeC
Confidence 854
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A .... |
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-11 Score=98.93 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=49.9
Q ss_pred EeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCC---CCcccccceeeeeecCCC
Q 012353 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGP---ARPTGGAAAVVMLVGPDA 173 (465)
Q Consensus 111 ~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~---~~~t~GdGA~A~Ll~~~~ 173 (465)
||++++|.|++.||++|..+|+++.. ++||||++|...- .+.. ..++|||||+|+||++++
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~--~~~Lvv~~d~~s~~~~~~~~~~~~~~gDgAaA~vl~~~~ 65 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRA--KNALVVGGDRLSRIVDRTDRQTAFIFGDGAAAVVLSRDE 65 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS---SEEEEEEEEEGGGGSHTTHHHHHTTB-EEEEEEEEEEES
T ss_pred CcccccchHHHHHHHHHHHHHhhccC--CEEEEEeeccccccccccccCcceeecchheEEEEEecC
Confidence 79999999999999999999999966 9999999999843 3322 346899999999999973
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=119.76 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+++..+|+.+|++++|+++|+++++||.|++++.++....+..+..++..+|+ ...+++++++++|++|..|+.+|.
T Consensus 22 ~~~~~~~La~~A~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl--~~~~p~~~V~~~Casg~~ai~~A~ 99 (393)
T PRK05656 22 ANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGL--PHSVPAMTLNKVCGSGLKALHLAA 99 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCC--CCCcceEEecccchhHHHHHHHHH
Confidence 367899999999999999999999999999999988654456677889999997 334789999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAVY 151 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~y 151 (465)
.+|++|.+ +.|||+++|..+.
T Consensus 100 ~~I~sG~~--d~vLv~G~E~ms~ 120 (393)
T PRK05656 100 QAIRCGDA--EVIIAGGQENMSL 120 (393)
T ss_pred HHHHcCCC--CEEEEEEEhhhcc
Confidence 99999977 9999999998743
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=120.04 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=86.6
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCc--ccHHHHHHHHhcccCCCCceeEeec
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS--KSIKTFLMQIFEKFGNTDIEGVDST 114 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~--ps~a~~l~~~LGl~g~~~~~~~di~ 114 (465)
+|+|+..+.....+++..+|+++|++++|+++|++++|||.|+++| +++... ...+..|++.||+ ....++++.
T Consensus 8 vG~g~t~~~~~~~~~s~~eL~~eAa~~Al~dAgl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl---~~~~~~~v~ 83 (386)
T PRK08313 8 LGTGQTKYVAKRQDVSMAGLVREAIDRALADAGLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGA---TGKPLIRVH 83 (386)
T ss_pred EEeecCCcCccCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-cccccccccCchHHHHHhcCC---CCCceEEEe
Confidence 4677655411135788999999999999999999999999999987 443321 1234689999997 456789999
Q ss_pred CcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 115 ~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
++|.++..+++.|..+|++|.+ ++||||++|.
T Consensus 84 ~~casg~~al~~A~~~I~sG~~--~~vLVvg~e~ 115 (386)
T PRK08313 84 TAGSVGGSTAVVAASLVQSGVY--RRVLAVAWEK 115 (386)
T ss_pred ccCHHHHHHHHHHHHHHHCCCC--CEEEEEEEEE
Confidence 9999999999999999999977 9999999985
|
|
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=112.20 Aligned_cols=177 Identities=18% Similarity=0.122 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHCCCC---cCCccEEEEEeec---------------CCCCcc---------cHHHHHHHHhcccCC
Q 012353 53 VISMSLTAVTNLLEKYKID---PKQIGRLEVGSET---------------VIDKSK---------SIKTFLMQIFEKFGN 105 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~---~~~Id~li~~T~s---------------~~~~~p---------s~a~~l~~~LGl~g~ 105 (465)
...|++.|++++|+++|++ +++|+.++.++.. +....| ..+..|...||+.
T Consensus 80 ~~~lal~Aa~eAl~dAgl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~-- 157 (410)
T PRK07103 80 SAQAALAAAREAWRDAALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIR-- 157 (410)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCC--
Confidence 4579999999999999986 4566665543321 111112 2556788899972
Q ss_pred CCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c------c-----------cCCC-----------C
Q 012353 106 TDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y-----------AEGP-----------A 156 (465)
Q Consensus 106 ~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~------y-----------~~~~-----------~ 156 (465)
.+++.+..+|++++.||..|..+|++|.+ +.|||+++|.. . + ...+ +
T Consensus 158 --G~~~tv~~acas~~~Al~~A~~~I~~G~~--d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~d 233 (410)
T PRK07103 158 --GEGFTVGGASASGQLAVIQAARLVQSGSV--DACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRD 233 (410)
T ss_pred --CCcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCC
Confidence 34577899999999999999999999987 99999998742 0 0 0000 1
Q ss_pred CcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh
Q 012353 157 RPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL 231 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~ 231 (465)
..+.|+||+|+||++.+.. .+...+.|+.... |-+.. .-| ++ ....++++..+++.
T Consensus 234 G~v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~--d~~~~----~~p--~~--------~~~~~a~~~Al~~A--- 294 (410)
T PRK07103 234 GFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRL--DANRG----PDP--SL--------EGEMRVIRAALRRA--- 294 (410)
T ss_pred CeeEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEec--CCCCC----CCC--CH--------HHHHHHHHHHHHHc---
Confidence 2357999999999975321 1111122222211 11110 011 11 11123334444443
Q ss_pred hcCCCCCCCCceeeccCCchHHHHHH
Q 012353 232 EGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 232 ~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
++.++|||++..|..++...+..
T Consensus 295 ---gi~~~dId~v~~hgtgt~~~D~~ 317 (410)
T PRK07103 295 ---GLGPEDIDYVNPHGTGSPLGDET 317 (410)
T ss_pred ---CCCHHHCCEEEccCCCCCCCCHH
Confidence 78999999999999998865544
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=118.00 Aligned_cols=98 Identities=8% Similarity=0.047 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+++..+|+.+|++++|+++|++|++||.||+++.++.......+..++..+|+ ..++++++++++|++|..||.+|.
T Consensus 22 ~~~~~~eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl--~~~~p~~~V~~~CaSg~~Al~~A~ 99 (393)
T PRK08235 22 KDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGI--PWEVQTETVNKVCASGLRAVTLAD 99 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCC--CCCcceeehhhhhhHHHHHHHHHH
Confidence 378899999999999999999999999999999887532233455567888997 457899999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
.+|++|.+ +.|||+++|..+
T Consensus 100 ~~I~sG~~--d~vLvvG~E~ms 119 (393)
T PRK08235 100 QIIRAGDA--SVIVAGGMESMS 119 (393)
T ss_pred HHHHCCCC--CEEEEEeeeccc
Confidence 99999977 999999999764
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=118.85 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+++..+|+.+|++++|+++|+++++||.|++++.++....+..+..++..+|+ ..++++++++++|.+|..||..|..
T Consensus 23 ~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl--~~~~p~~~V~~~CaSg~~Al~~A~~ 100 (404)
T PRK06205 23 DVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGL--PVTVPGMQLDRRCGSGLQAVITAAM 100 (404)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCCceeehhhhhhHHHHHHHHHHH
Confidence 68899999999999999999999999999999998877777888889999997 4468899999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
+|++|.+ +.|||+++|..+
T Consensus 101 ~I~sG~~--d~vLv~G~E~ms 119 (404)
T PRK06205 101 QVQTGAA--DVVIAGGAESMS 119 (404)
T ss_pred HHHcCCC--CEEEEeeehhhc
Confidence 9999977 999999999874
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=117.46 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCccc-HHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps-~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.++...+|+.+|++++|+++|++|++||.|++++.++....++ .+..+...+|+ +.++++++++++|++|..||.+|
T Consensus 23 ~~~~~~dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl--~~~~p~~~V~~aCaSg~~Al~~A 100 (392)
T PRK07108 23 NMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGL--PVTVPGMTVNRFCSSGLQTIALA 100 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCC--CCCCceeeecchhhHHHHHHHHH
Confidence 4677899999999999999999999999999999887766554 78888888997 45689999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVY 151 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y 151 (465)
..+|++|.+ +.+||++.|.++.
T Consensus 101 ~~~I~sG~~--d~vlagGvE~ms~ 122 (392)
T PRK07108 101 AQRVIAGEG--DVFVAGGVESISC 122 (392)
T ss_pred HHHHHCCCC--CEEEEEEEeccCC
Confidence 999999977 9999999998853
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=116.46 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=87.2
Q ss_pred hhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCc
Q 012353 38 GLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (465)
Q Consensus 38 Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~a 116 (465)
|.+...+. ..+++..+|+++|++++|+++|+++++||.|++++..+... .+..+..|++.||+ .+++++++.++
T Consensus 10 g~~~t~~~--r~~~~~~~La~~A~~~Al~dAgl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~---~~~~~~~v~~~ 84 (399)
T PRK06059 10 GAGMHPWG--KWGRDFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGW---NGAPVSSSYAA 84 (399)
T ss_pred EecccccC--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCC---CCCceecccch
Confidence 44444332 23577899999999999999999999999999887665433 34567889999996 45778999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 117 C~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|++++.||.+|..+|++|.+ +.||||++|..
T Consensus 85 Casg~~al~~A~~~I~sG~~--~~vLvvg~e~~ 115 (399)
T PRK06059 85 CASGSQALQSARAQILAGLC--DVALVVGADTT 115 (399)
T ss_pred hHHHHHHHHHHHHHHHCCCC--CEEEEEEEccc
Confidence 99999999999999999977 99999999964
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-10 Score=115.66 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCcCCccEEEEEeecCCCCcccHHHHH-HHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKY-KIDPKQIGRLEVGSETVIDKSKSIKTFL-MQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~T~s~~~~~ps~a~~l-~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+++..+|+.+|++++|+++ |+++++||.||+++.++....+.....+ ...+|+ ...+++++|+++|.+|..|+..|
T Consensus 28 ~~s~~eLa~~A~~~AL~~a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~~Gl--~~~~p~~~V~~aCaSg~~Al~~A 105 (399)
T PRK09052 28 NTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGL--PNSVGGVTVNRFCASGLQAVAMA 105 (399)
T ss_pred CCCHHHHHHHHHHHHHHhccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHHcCC--CCCCceeeecchhhHHHHHHHHH
Confidence 5789999999999999997 9999999999999888765555555554 445576 33588999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..+|++|.+ +.|||+++|..+
T Consensus 106 ~~~I~sG~~--d~vLv~G~E~mS 126 (399)
T PRK09052 106 ADRIRVGEA--DVMIAAGVESMS 126 (399)
T ss_pred HHHHHCCCC--CEEEEEEEeccc
Confidence 999999977 999999999764
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-08 Score=103.14 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=134.8
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEecCC---------C----CCC-HHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMAFCS---------E----VED-VISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~av~~---------~----~Ed-~~~la~~Aa 61 (465)
++|-|.++++..|--. +.+++.+.. |.+ + .++. ..+..+.-...+ . .-| ...+++.|+
T Consensus 4 ~~VvItG~g~~~p~g~-~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~ 82 (414)
T PRK08722 4 RRVVVTGMGMLSPVGN-TVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAG 82 (414)
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHH
Confidence 5799999999999874 666665542 221 1 1110 011001000000 0 001 235888999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC-----------------Cc--------c-cHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------KS--------K-SIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~-----------------~~--------p-s~a~~l~~~LGl~g~~~~~~~ 111 (465)
.++|+++|+++.+.+ .|+++|..+.. .. + .++.+|...+|+.| +.+
T Consensus 83 ~~Al~dAGl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~G----p~~ 158 (414)
T PRK08722 83 IQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRG----PNI 158 (414)
T ss_pred HHHHHHcCCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCC----Ccc
Confidence 999999999754333 35666653211 01 1 36778888999732 456
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------cc---------C---CCCC--------cccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------YA---------E---GPAR--------PTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y~---------~---~~~~--------~t~GdGA 164 (465)
.+..+|++++.||..|..+|++|.. +.+||+++|... |. + ...+ ...||||
T Consensus 159 ti~~aCas~~~Al~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGa 236 (414)
T PRK08722 159 AISTACTTGLHNIGHAARMIAYGDA--DAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGA 236 (414)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceE
Confidence 7789999999999999999999987 999999999741 10 0 0112 2369999
Q ss_pred eeeeecCCCCc-----ccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012353 165 VVMLVGPDAPV-----AFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238 (465)
Q Consensus 165 ~A~Ll~~~~~~-----~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (465)
+++||.+.... .+...+.+... .+...+..|. .+++ ....+++..+++. ++++
T Consensus 237 aalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~-------~~~~--------~~~~a~~~Al~~a------gi~~ 295 (414)
T PRK08722 237 GMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPS-------EDGS--------GGALAMEAAMRDA------GVTG 295 (414)
T ss_pred EEEEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC-------cchH--------HHHHHHHHHHHHc------CCCH
Confidence 99999975321 01001222211 1222222332 1232 1122333333433 7899
Q ss_pred CCCceeeccCCchHHHHHH
Q 012353 239 SNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 239 ~did~~~~H~p~~km~~~~ 257 (465)
+|||++..|..++...+.+
T Consensus 296 ~did~ie~hgtgt~~~D~~ 314 (414)
T PRK08722 296 EQIGYVNAHGTSTPAGDVA 314 (414)
T ss_pred HHcCEEEccCccCCCCCHH
Confidence 9999999999988766654
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-08 Score=102.58 Aligned_cols=223 Identities=14% Similarity=0.176 Sum_probs=131.7
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh--hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCc--
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDP-- 72 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~--~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~-- 72 (465)
++|-|.++|+..|--. .+++.+.. |.+ + ..|. ....-.... ........++..|++++|+++|+++
T Consensus 2 ~rVvITG~G~vsp~G~--~~~~~~~l~~G~sgi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~Al~dagl~~~~ 77 (381)
T PRK05952 2 MKVVVTGIGLVSALGD--LEQSWQRLLQGKSGIKLHQPFPELPPLPLGLIG--NQPSSLEDLTKTVVTAALKDAGLTPPL 77 (381)
T ss_pred CeEEEEeeEEECcccC--HHHHHHHHHcCCCCeEeCCcccccccccceeec--cccccccHHHHHHHHHHHHhcCCCCCC
Confidence 4799999999999886 55544432 221 1 0110 000000000 0011233467789999999999864
Q ss_pred CCccEEEEEeecCC--------------------CCc--------c-cHHHHHHHHhcccCCCCceeEeecCcChhHHHH
Q 012353 73 KQIGRLEVGSETVI--------------------DKS--------K-SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123 (465)
Q Consensus 73 ~~Id~li~~T~s~~--------------------~~~--------p-s~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~A 123 (465)
++++ |+++|..+. +.. | ..+..|...+|+.| +.+.+..+|++++.|
T Consensus 78 ~~~G-v~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~G----p~~ti~~aCasg~~A 152 (381)
T PRK05952 78 TDCG-VVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQG----PVLAPMAACATGLWA 152 (381)
T ss_pred CCEE-EEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCC----ccccccchhHHHHHH
Confidence 4454 455664321 101 1 24667888898733 456778999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEeccc-c------cc------CC--------CCCcccccceeeeeecCCCCc-----cc
Q 012353 124 LFNCVNWVESSSWDGRYGLVVCTDSA-V------YA------EG--------PARPTGGAAAVVMLVGPDAPV-----AF 177 (465)
Q Consensus 124 L~~A~~~l~sg~~~~~~aLVVasD~~-~------y~------~~--------~~~~t~GdGA~A~Ll~~~~~~-----~~ 177 (465)
|..|..+|++|.. +.+||.++|.. . +. .. .+....|+||+++||++.+.. .+
T Consensus 153 i~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~ls~~~~rPfd~~r~G~v~gEGaa~lvLe~~~~A~~rg~~i 230 (381)
T PRK05952 153 IAQGVELIQTGQC--QRVIAGAVEAPITPLTLAGFQQMGALAKTGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKI 230 (381)
T ss_pred HHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccEEEEEEeeHHHHHhCCCce
Confidence 9999999999977 99999999962 1 10 01 112457999999999975321 11
Q ss_pred cccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHH
Q 012353 178 ESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQK 256 (465)
Q Consensus 178 ~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~ 256 (465)
...+.|.... +...... |..+++ ...++++..+++. ++.++|||++..|...++..+.
T Consensus 231 ~a~I~g~~~~~d~~~~~~-------~~~~~~--------~~~~ai~~Al~~a------gi~p~dId~i~~hgtgt~~~D~ 289 (381)
T PRK05952 231 YGQILGFGLTCDAYHMSA-------PEPDGK--------SAIAAIQQCLARS------GLTPEDIDYIHAHGTATRLNDQ 289 (381)
T ss_pred EEEEEEEEecCCCCCCCC-------CCCCHH--------HHHHHHHHHHHHh------CCCHHHeeEEEccCCCCCCCcH
Confidence 1112222211 1111111 112222 2233444444444 7889999999999998877665
Q ss_pred H
Q 012353 257 S 257 (465)
Q Consensus 257 ~ 257 (465)
+
T Consensus 290 ~ 290 (381)
T PRK05952 290 R 290 (381)
T ss_pred H
Confidence 4
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-10 Score=114.92 Aligned_cols=96 Identities=9% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+++..+|+++|++++|+++|+++++||.|++++.++....+..+..++..+|+ ..++.++++.++|+++..||..|..
T Consensus 23 ~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~gl--~~~~~~~~v~~~Casg~~al~~A~~ 100 (393)
T PRK05790 23 DVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQNPARQAALKAGL--PVEVPALTINKVCGSGLKAVALAAQ 100 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcCC--CCCCceeeecccchHHHHHHHHHHH
Confidence 58899999999999999999999999999999876543334445556667786 3357889999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc
Q 012353 130 WVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~ 149 (465)
+|++|.+ +.|||+++|..
T Consensus 101 ~I~sG~~--d~vLv~G~e~~ 118 (393)
T PRK05790 101 AIRAGDA--DIVVAGGQESM 118 (393)
T ss_pred HHHcCCC--CEEEEEeeecc
Confidence 9999977 99999999975
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.4e-10 Score=114.44 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCc-ccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS-KSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~-ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+..+.+|+..|++++|+++|++|++||.||+++.++.... +..+......+|+ ..++++++|+++|++|+.||.+|
T Consensus 24 ~~~~~~dLa~~A~~~al~~agi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl--~~~~pa~~Vn~aCaSg~~Ai~~A 101 (402)
T PRK08242 24 HEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGL--PETVPGVQINRFCASGLEAVNLA 101 (402)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccccccHHHHHHHHcCC--CCCCCeEEEcchhhhHHHHHHHH
Confidence 46789999999999999999999999999999999875432 3455556677787 46799999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..+|++|.. +.+||+++|..+
T Consensus 102 ~~~I~sG~~--d~vLv~G~E~mS 122 (402)
T PRK08242 102 AAKVRSGWD--DLVIAGGVESMS 122 (402)
T ss_pred HHHHHcCCC--CEEEEEEEEccC
Confidence 999999977 999999999874
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-08 Score=100.64 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=131.2
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh--hhhcCeEEecCCC-------------C-CCHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT--IGLGQECMAFCSE-------------V-EDVISMSLTA 60 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~--~Gig~r~~av~~~-------------~-Ed~~~la~~A 60 (465)
++|-|.+||+..|--. +.+++.+.. |.+ + .++. .++..+.-...++ . ....-|++.|
T Consensus 2 ~~VvITG~g~vtp~G~-~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~a 80 (405)
T PRK09116 2 RRVVVTGMGGVTALGE-DWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRA 80 (405)
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHH
Confidence 6899999999999874 566554432 221 1 0010 0111111111110 0 1235689999
Q ss_pred HHHHHHHCCCCc------CCccEEEEEeecCCC-----------------Cc--------c-cHHHHHHHHhcccCCCCc
Q 012353 61 VTNLLEKYKIDP------KQIGRLEVGSETVID-----------------KS--------K-SIKTFLMQIFEKFGNTDI 108 (465)
Q Consensus 61 a~~aL~~agi~~------~~Id~li~~T~s~~~-----------------~~--------p-s~a~~l~~~LGl~g~~~~ 108 (465)
++++|+++|++. +++ .|+++|..+.. .. | ..+..|...+|+.|
T Consensus 81 a~~Al~dAGl~~~~~~~~~r~-Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G---- 155 (405)
T PRK09116 81 SELALEDAGLLGDPILTDGRM-GIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKG---- 155 (405)
T ss_pred HHHHHHHcCCCCccccCCCcE-EEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCC----
Confidence 999999999832 233 34566643210 11 2 25677888999733
Q ss_pred eeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------c------c--C-C---CCC--------ccccc
Q 012353 109 EGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y------A--E-G---PAR--------PTGGA 162 (465)
Q Consensus 109 ~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------y------~--~-~---~~~--------~t~Gd 162 (465)
+.+-+..+|++++.||..|..+|++|.. +.+||.++|... + . . . ..+ ...|+
T Consensus 156 p~~ti~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gE 233 (405)
T PRK09116 156 RVIPTSSACTSGSQGIGYAYEAIKYGYQ--TVMLAGGAEELCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGE 233 (405)
T ss_pred CcccccchhhhHHHHHHHHHHHHHcCCC--CEEEEecchhcChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeec
Confidence 4566789999999999999999999987 999999999631 1 0 0 0 112 34699
Q ss_pred ceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 012353 163 AAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQF 236 (465)
Q Consensus 163 GA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~ 236 (465)
||+++||++.... .+...+.|.... +......| ++ +.+..+++..+++. ++
T Consensus 234 Ga~~~vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p---------~~--------~~~~~ai~~AL~~A------gi 290 (405)
T PRK09116 234 GAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQP---------QA--------ETMQIAMELALKDA------GL 290 (405)
T ss_pred cEEEEEEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCC---------CH--------HHHHHHHHHHHHHh------CC
Confidence 9999999974311 111012222111 11111111 11 22334555555554 78
Q ss_pred CCCCCceeeccCCchHHHHH
Q 012353 237 SLSNADYFVFHSPYNKLVQK 256 (465)
Q Consensus 237 ~~~did~~~~H~p~~km~~~ 256 (465)
.++|||++.+|...+...+.
T Consensus 291 ~p~dId~I~~Hgtgt~~~D~ 310 (405)
T PRK09116 291 APEDIGYVNAHGTATDRGDI 310 (405)
T ss_pred CHHHcCEEECcCccCCCCCH
Confidence 99999999999987765444
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=113.99 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+.+..+|+.+|++++|+++|+++++||.|++++.++....+..+..++..+|+ ..++++++++++|++++.||.+|..
T Consensus 24 ~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl--~~~~p~~~v~~~CaSg~~al~~A~~ 101 (426)
T PRK08170 24 PFSASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIARVVALRLGC--GEKVPAWTVQRNCASGMQALDSAAA 101 (426)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCc--CCCceeeeccchhhHHHHHHHHHHH
Confidence 46889999999999999999999999999999877544445677889999997 4468899999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
+|++|.+ +.|||+++|..+
T Consensus 102 ~I~sG~~--d~vLv~G~E~ms 120 (426)
T PRK08170 102 NIALGRA--DLVLAGGVEAMS 120 (426)
T ss_pred HHHCCCC--CEEEEEEEeccc
Confidence 9999977 999999999763
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=104.75 Aligned_cols=228 Identities=14% Similarity=0.117 Sum_probs=135.5
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEe-cC--------CCC-----CCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMA-FC--------SEV-----EDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~a-v~--------~~~-----Ed~~~la~~Aa 61 (465)
++|-|.+++..+|--. +.+++.+.. |.+ + .++. .+...+... ++ ++. .....|++.|+
T Consensus 2 ~~v~ItG~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 2 RRVVVTGLGAVSPLGN-DVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CcEEEEcceEECCCcC-CHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 6799999999999764 666654432 221 0 1110 000000000 10 110 12467899999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC-----------------C--------c-ccHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------K--------S-KSIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~-----------------~--------~-ps~a~~l~~~LGl~g~~~~~~~ 111 (465)
+++|+++|++++++| .++++|..+.. . . ...+.+|...||+. -..+
T Consensus 81 ~~Al~dAGl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~----Gp~~ 156 (411)
T PRK07314 81 KQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAK----GPNH 156 (411)
T ss_pred HHHHHHcCCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCC----Cccc
Confidence 999999999998888 47777653210 0 1 12556788899873 2445
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c---------cCC-----------CCCcccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------AEG-----------PARPTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y---------~~~-----------~~~~t~GdGA 164 (465)
-+..+|++++.||..|..+|++|.+ +.|||.++|... + ... .+....||||
T Consensus 157 tv~~acaSgl~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGA 234 (411)
T PRK07314 157 SIVTACATGAHAIGDAARLIAYGDA--DVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGA 234 (411)
T ss_pred cchhhhHHHHHHHHHHHHHHhcCCC--CEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceE
Confidence 6678999999999999999999987 999999998631 0 000 0124579999
Q ss_pred eeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012353 165 VVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (465)
Q Consensus 165 ~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465)
+|+||.+.+.. .+...+.|.... .|-+... .|...+. ....+++..+++. ++.++
T Consensus 235 aavvL~~~~~A~~~g~~~~a~I~g~~~~--~d~~~~~----~~~~~~~--------~~~~a~~~Al~~a------gi~~~ 294 (411)
T PRK07314 235 GILVLEELEHAKARGAKIYAEVVGYGMT--GDAYHMT----APAPDGE--------GAARAMKLALKDA------GINPE 294 (411)
T ss_pred EEEEEeeHHHHHHCCCeEEEEEEEEEEc--CCCCCCC----CCCCCcH--------HHHHHHHHHHHHc------CCCHH
Confidence 99999875311 100012222111 1111111 1111221 1112334444443 79999
Q ss_pred CCceeeccCCchHHHHHH
Q 012353 240 NADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 240 did~~~~H~p~~km~~~~ 257 (465)
|||++..|..++...+..
T Consensus 295 dId~v~~hgtgt~~~d~~ 312 (411)
T PRK07314 295 DIDYINAHGTSTPAGDKA 312 (411)
T ss_pred HCCEEEccccCCccccHH
Confidence 999999999988766554
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=105.66 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCc-c----EEEEEeecCCC---------------------Ccc-----cHHHHHHHHhc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQI-G----RLEVGSETVID---------------------KSK-----SIKTFLMQIFE 101 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~I-d----~li~~T~s~~~---------------------~~p-----s~a~~l~~~LG 101 (465)
...|++.|++++|+++|++++++ + .++++|..+.. ..+ ..+.+|...||
T Consensus 82 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 161 (424)
T PRK06333 82 FILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYG 161 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHhC
Confidence 35689999999999999987766 2 46667654321 011 24567888898
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------------cc----CC---C------
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------------YA----EG---P------ 155 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------------y~----~~---~------ 155 (465)
+. -+++-+..+|++++.||..|..+|++|.+ +.+||+++|... +. .. .
T Consensus 162 l~----Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~ 235 (424)
T PRK06333 162 FK----GPLGAPVTACAAGVQAIGDAARLIRSGEA--DVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDR 235 (424)
T ss_pred CC----CCCccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCC
Confidence 73 34556789999999999999999999987 999999999730 10 00 0
Q ss_pred --CCcccccceeeeeecCCCC-----ccccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 156 --ARPTGGAAAVVMLVGPDAP-----VAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 156 --~~~t~GdGA~A~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
+..+.|+||+++||.+... ..+...+.|.... +...+.. |..++. .+.++++..+++
T Consensus 236 ~~~G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~-------~~~~~~--------~~~~a~~~Al~~ 300 (424)
T PRK06333 236 DRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTA-------GPEDGE--------GARRAMLIALRQ 300 (424)
T ss_pred CCCCeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCC-------CCCCcH--------HHHHHHHHHHHH
Confidence 1235799999999987421 1111112222221 1111111 112332 122333334343
Q ss_pred hhhhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 228 YEKLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 228 ~~~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
. ++.++|||++..|-.++...+.+
T Consensus 301 A------gi~p~dId~i~~hgtgt~~~D~~ 324 (424)
T PRK06333 301 A------GIPPEEVQHLNAHATSTPVGDLG 324 (424)
T ss_pred c------CCCHHHCCEEeccCCCCccchHH
Confidence 3 78999999999999988865543
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=103.44 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=89.3
Q ss_pred cHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc--------------------
Q 012353 91 SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------------------- 150 (465)
Q Consensus 91 s~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------------------- 150 (465)
..+.+|+..||+. -+++.+..+|++++.||..|..+|++|.+ +.|||+++|...
T Consensus 138 ~~a~~ia~~lgl~----Gp~~~i~~acas~~~Al~~A~~~I~~G~~--d~vlvgg~d~~~~~~~~~~~~~~~l~~~~~~P 211 (392)
T PRK09185 138 SLADFLRAYLGLS----GPAYTISTACSSSAKVFASARRLLEAGLC--DAAIVGGVDSLCRLTLNGFNSLESLSPQPCRP 211 (392)
T ss_pred HHHHHHHHHhCCC----CCcccccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeccccChHHHHHHHhccccCCCccCC
Confidence 4778899999973 25677888999999999999999999987 999999998531
Q ss_pred ccCCCCCcccccceeeeeecCCCCcccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhh
Q 012353 151 YAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE 229 (465)
Q Consensus 151 y~~~~~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~ 229 (465)
|+......+.||||+++||++.....+. +.|.-. .+.+.... |..++. ...++++..+++.
T Consensus 212 fd~~~~G~~~gEGaa~vVLe~~~~~~~~--I~g~g~~~d~~~~~~-------~~~~~~--------~~~~a~~~Al~~A- 273 (392)
T PRK09185 212 FSANRDGINIGEAAAFFLLEREDDAAVA--LLGVGESSDAHHMSA-------PHPEGL--------GAILAMQQALADA- 273 (392)
T ss_pred CcCCCCccceeceEEEEEEEEcCCCcEE--EEEEEEeCCCCCCCC-------CCCCHH--------HHHHHHHHHHHHc-
Confidence 0011123568999999999987321111 222211 11111111 111221 1223344444443
Q ss_pred hhhcCCCCCCCCceeeccCCchHHHHH
Q 012353 230 KLEGKQFSLSNADYFVFHSPYNKLVQK 256 (465)
Q Consensus 230 ~~~~~~~~~~did~~~~H~p~~km~~~ 256 (465)
++.++|||++..|..+++..+.
T Consensus 274 -----gl~~~dId~v~~hgtgt~~~D~ 295 (392)
T PRK09185 274 -----GLAPADIGYINLHGTATPLNDA 295 (392)
T ss_pred -----CCCHHHccEEEeCCCCCcCCCH
Confidence 7999999999999998875553
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=112.08 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=87.8
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC--cccHHHHHHHHhcccCCCCceeEeec
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK--SKSIKTFLMQIFEKFGNTDIEGVDST 114 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~--~ps~a~~l~~~LGl~g~~~~~~~di~ 114 (465)
+|+|+..+.- ..+++..+|+++|++++|+++|++++|||.+++++. +... .+..+..+++.||+ .+..++++.
T Consensus 14 vG~g~t~~~~-~~~~~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~-~~~~~~~~~~a~~l~~~lG~---~~~~~~~V~ 88 (392)
T PRK06065 14 IGAGLTLFRR-RLLETPQELAWEAASKALDEAGLELKDIDCVVIGSA-PDAFDGVHMKGEYLSHGSGG---IRKPVSRVY 88 (392)
T ss_pred EEecccCCcC-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecc-CCcccccccHHHHHHHHcCC---CCCCeEEEe
Confidence 5777766543 357889999999999999999999999999999863 2222 45578889999997 346788999
Q ss_pred CcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 115 ~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
++|.+|..||..|...|++|.+ +.||||++|.
T Consensus 89 ~~gasG~~al~~A~~~I~sG~a--d~vLVvg~e~ 120 (392)
T PRK06065 89 VGGATGVMTAIAGWYHVASGLC--QKVLAVAEEK 120 (392)
T ss_pred cCchhHHHHHHHHHHHHhCCCC--CEEEEEEeec
Confidence 9999999999999999999988 9999999886
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=111.44 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHH-HHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKT-FLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~-~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+.+.+|+.+|++++|++++++|++||.||+++.++....+..+. .+++.+|+ .++++++++++|++|+.||..|.
T Consensus 20 ~~~~~el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~lg~---~~~p~~~V~~~Casg~~al~~A~ 96 (393)
T cd00826 20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL---QEAPAIGMNNLCGSGLRALALAM 96 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHHHHHcCCC---CCCcEEEecchhHHHHHHHHHHH
Confidence 466799999999999999999999999999999887654445554 36777774 67889999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~ 149 (465)
.+|++|.+ +.+||+++|..
T Consensus 97 ~~I~sG~~--~~vlv~g~e~~ 115 (393)
T cd00826 97 QLIAGGDA--NCILAGGFEKM 115 (393)
T ss_pred HHHHCCCC--CEEEEEeeecc
Confidence 99999977 99999999986
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-08 Score=103.14 Aligned_cols=179 Identities=15% Similarity=0.106 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHCCCCcC-----CccEEEEEeecCCC-----------------Cc--------c-cHHHHHHHHhc
Q 012353 53 VISMSLTAVTNLLEKYKIDPK-----QIGRLEVGSETVID-----------------KS--------K-SIKTFLMQIFE 101 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~-----~Id~li~~T~s~~~-----------------~~--------p-s~a~~l~~~LG 101 (465)
...|++.|+.++|+++|+++. +...|+++|..+.. .. + ..+.+|...+|
T Consensus 93 ~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~g 172 (437)
T PLN02836 93 FIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172 (437)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHhC
Confidence 457899999999999998542 35567777653221 01 1 24567888888
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c----------cC-----------
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y----------AE----------- 153 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y----------~~----------- 153 (465)
+. -.++.+.++|++++.||..|..+|++|.+ +.+||.++|... + ..
T Consensus 173 l~----Gp~~tv~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~pfd~ 246 (437)
T PLN02836 173 FQ----GPNHAAVTACATGAHSIGDAFRMIQFGDA--DVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEASRPFDC 246 (437)
T ss_pred CC----CceeceeChhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHHhhhhhcccCCCcccccCCccc
Confidence 72 35677889999999999999999999987 899999988630 0 00
Q ss_pred CCCCcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHh
Q 012353 154 GPARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKY 228 (465)
Q Consensus 154 ~~~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~ 228 (465)
..+..+.|+||+|+||++.... .+...+.|+... .|-+.. .-|..+++ ....+++..+++.
T Consensus 247 ~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~--~d~~~~----~~p~~~~~--------~~~~a~~~Al~~A 312 (437)
T PLN02836 247 DRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMS--GDAHHI----TQPHEDGR--------GAVLAMTRALQQS 312 (437)
T ss_pred CCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeec--CCCCCC----cCCCcchH--------HHHHHHHHHHHHc
Confidence 0112457999999999975321 000012222211 111100 01212232 1222333333433
Q ss_pred hhhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 229 EKLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 229 ~~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
|+.++|||++..|-.++.+.+..
T Consensus 313 ------gi~~~dId~ve~hgtgt~~~D~~ 335 (437)
T PLN02836 313 ------GLHPNQVDYVNAHATSTPLGDAV 335 (437)
T ss_pred ------CCCHhHcCEEEccCCcCcCcCHH
Confidence 78999999999999988765544
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-08 Score=102.42 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=105.4
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEe-cC--------CC-----CCCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMA-FC--------SE-----VEDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~a-v~--------~~-----~Ed~~~la~~Aa 61 (465)
+.|-|.++|+..|--. +.+++.+.. |.+ + ..|. .+...+.-. ++ ++ -.....|++.|+
T Consensus 2 ~~v~ItG~g~vsp~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 2 KRVVVTGIGMINSLGL-NKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCEEEEeeEEECCCcC-CHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 5799999999999875 555554432 221 1 1110 000000000 10 00 012467899999
Q ss_pred HHHHHHCCCCcCCccE----EEEEeecCCC-------------------------Ccc-cHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIGR----LEVGSETVID-------------------------KSK-SIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id~----li~~T~s~~~-------------------------~~p-s~a~~l~~~LGl~g~~~~~~~ 111 (465)
+++|+++|+++++++. +++++..+.. ..+ ..+.+|...+|+. -+.+
T Consensus 81 ~~AL~dAGl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~----Gp~~ 156 (406)
T PRK08439 81 REAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLK----GPNL 156 (406)
T ss_pred HHHHHHcCCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCC----CCcc
Confidence 9999999998877653 4555432110 011 4677899999983 2456
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c------c------c---C---CC--------CCcccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y------A---E---GP--------ARPTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~------y------~---~---~~--------~~~t~GdGA 164 (465)
.+..+|++++.||..|..+|++|.+ +.+||+++|.. . + . . .. ...+.|+||
T Consensus 157 ~~~~acas~~~Al~~A~~~i~~G~~--d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa 234 (406)
T PRK08439 157 SSVTACAAGTHAIIEAVKTIMLGGA--DKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCce
Confidence 6779999999999999999999987 99999999963 0 1 0 0 00 123579999
Q ss_pred eeeeecCC
Q 012353 165 VVMLVGPD 172 (465)
Q Consensus 165 ~A~Ll~~~ 172 (465)
+++||++.
T Consensus 235 ~~lvLe~~ 242 (406)
T PRK08439 235 GALVLEEY 242 (406)
T ss_pred EEEEEccH
Confidence 99999975
|
|
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-08 Score=101.94 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHCCCC-cCCccE----EEEEeecCCCC-----------------cc---------cHHHHHHHHhc
Q 012353 53 VISMSLTAVTNLLEKYKID-PKQIGR----LEVGSETVIDK-----------------SK---------SIKTFLMQIFE 101 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~-~~~Id~----li~~T~s~~~~-----------------~p---------s~a~~l~~~LG 101 (465)
...|++.|++++|+++|++ +++++. +++++..+... .| ..+.+|...+|
T Consensus 77 ~~~l~~~aa~~Al~dAGl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~ 156 (421)
T PTZ00050 77 ATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHK 156 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHHhC
Confidence 4789999999999999998 665543 44555432210 01 24556777888
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-----------------ccCC---CC-----
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-----------------YAEG---PA----- 156 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-----------------y~~~---~~----- 156 (465)
+. -+++.+..+|++++.||..|..+|++|.+ +.+||+++|... +... ..
T Consensus 157 l~----Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~ 230 (421)
T PTZ00050 157 LK----GPSGSAVTACATGAHCIGEAFRWIKYGEA--DIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDK 230 (421)
T ss_pred CC----CcccccccHhHHHHHHHHHHHHHHHcCCC--CEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcC
Confidence 73 24567789999999999999999999987 999999998620 0000 01
Q ss_pred ---CcccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 157 ---RPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 157 ---~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
....|+||+|+||.+.... .+...+.|.... +...+..| ..++. ....+++..+++
T Consensus 231 ~~~G~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p-------~~~~~--------~~~~ai~~Al~~ 295 (421)
T PTZ00050 231 DRAGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAP-------HPDGR--------GARRCMENALKD 295 (421)
T ss_pred CCCCEeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCC-------CCChH--------HHHHHHHHHHHh
Confidence 1346999999999875321 110012222211 11111112 12232 122333444444
Q ss_pred -hhhhhcCCCCCCCCceeeccCCchHHHHH
Q 012353 228 -YEKLEGKQFSLSNADYFVFHSPYNKLVQK 256 (465)
Q Consensus 228 -~~~~~~~~~~~~did~~~~H~p~~km~~~ 256 (465)
. |+.++|||++..|..++.+.+.
T Consensus 296 ~A------gi~~~dId~ie~hgtgt~~~D~ 319 (421)
T PTZ00050 296 GA------NININDVDYVNAHATSTPIGDK 319 (421)
T ss_pred cc------CCChhhCCEEECCCccCCCCCH
Confidence 3 7899999999999988866543
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-09 Score=110.28 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC-CCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g-~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+.+..+|+.+|++++|+++|++|++||.|++|+..+.... .+...+..|++ | +.++++++++++|++|..|+..|
T Consensus 27 ~~~~~~eL~~~a~~~aL~~Agi~~~dID~vi~G~~~~~~~~--~~~~~~~~l~a-g~~~~~p~~~V~~aCaSG~~Av~~A 103 (397)
T PRK06954 27 ASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQG--QAPARQAALGA-GLPLSVGCTTVNKMCGSGMRAAMFA 103 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccc--hHHHHHHHHcC-CCCCCccEeeccccchHHHHHHHHH
Confidence 36778999999999999999999999999999987755432 22333344543 2 33589999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..+|++|.+ +.+||+++|..+
T Consensus 104 ~~~I~sG~~--d~vLv~G~E~ms 124 (397)
T PRK06954 104 HDMLVAGSV--DVIVAGGMESMT 124 (397)
T ss_pred HHHHHCCCC--CEEEEEeeeccC
Confidence 999999977 999999999874
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-08 Score=99.49 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+..+.+|+..|++.+++ |++ ++||.|++|+..+.. ...+..+...+|+ ...++++.+.++|++|+.|+..|..
T Consensus 22 ~~~~~~L~~~a~~~~~~--gi~-~~Id~vi~G~~~~~~--~~~~r~~~~~~Gl--~~~~p~~tV~~~CaSG~~Ai~~a~~ 94 (361)
T PRK06690 22 DYEVQQLAAPLLTFLSK--GME-REIDDVILGNVVGPG--GNVARLSALEAGL--GLHIPGVTIDRQCGAGLEAIRTACH 94 (361)
T ss_pred CCCHHHHHHHHHHHHHc--cch-hhcCEEEEEecCCCc--chHHHHHHHHcCC--CCCCCceehhhhhhHHHHHHHHHHH
Confidence 45689999999999865 896 899999999776542 3344457778887 4478999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
+|++|.. +.+||++.|..+
T Consensus 95 ~I~sG~~--d~~l~gG~E~ms 113 (361)
T PRK06690 95 FIQGGAG--KCYIAGGVESTS 113 (361)
T ss_pred HHHCCCC--CEEEEecccccc
Confidence 9999977 999999999763
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=102.42 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+.+..+|+..|++.+|++++++|++||.|++|+..+....+.++..+.-..|+ +..++++.|+++|.+|..||.+|.
T Consensus 22 ~~~~~~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl--~~~vp~~~V~~~CaSG~~Av~~a~ 99 (264)
T PF00108_consen 22 ADVSPEDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGL--PESVPATTVNRACASGLQAVHLAA 99 (264)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS---TTSEEEEEE-GGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhccc--ccccceeeehhhhhHHHHHHHHhh
Confidence 467899999999999999999999999999999988866666777777778888 678899999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|++|.. +.+|+++.|.++
T Consensus 100 ~~I~sG~~--dvvlagGvE~mS 119 (264)
T PF00108_consen 100 MAIASGEA--DVVLAGGVESMS 119 (264)
T ss_dssp HHHHTTS---SEEEEEEEEETT
T ss_pred hhhcCCCc--cEEEEecccccc
Confidence 99999977 999999999984
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-09 Score=109.02 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=82.9
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCc
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~a 116 (465)
+|+|+..+.- .++++..+|+.+|++++|+++|+++++||.|++++.. +..|+ ..|++.||+ +...++++..+
T Consensus 13 vG~g~t~~~~-~~~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~~--~~~~~--~~la~~lGl---~~~~~~~~~~g 84 (384)
T PRK06158 13 VGAATAGLGE-APGLSAMELLAQAAHRALADAGLTMADVDGLFTASPD--DALWG--LSVAEYLGI---RPRFVDGTMIG 84 (384)
T ss_pred EEeeecccee-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC--CCCcH--HHHHHHcCC---CCeeeccccCc
Confidence 5888776542 4578899999999999999999999999999998743 22333 579999997 45677888899
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 012353 117 CYGGTAALFNCVNWVESSSWDGRYGLVVC 145 (465)
Q Consensus 117 C~gg~~AL~~A~~~l~sg~~~~~~aLVVa 145 (465)
|.++..+|..|..+|++|.+ +.|||+.
T Consensus 85 ~~s~~~al~~A~~~I~sG~~--d~vLV~~ 111 (384)
T PRK06158 85 GSSFLAHLLPAALALEAGLC--DVALICY 111 (384)
T ss_pred cHHHHHHHHHHHHHHHcCCC--CEEEEee
Confidence 99999999999999999987 9999983
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=98.11 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=103.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CC---Ch-hhh-hhhhcCeEEecCC-------------CCCCHHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GA---SK-GKY-TIGLGQECMAFCS-------------EVEDVISMSLTAVT 62 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~---~~-~k~-~~Gig~r~~av~~-------------~~Ed~~~la~~Aa~ 62 (465)
+.|-|.+||+..|--. +.+++.+.. |. .+ ..| ..+...+.....+ .-.....|++.|++
T Consensus 2 ~rVvITG~G~vsp~G~-~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIGN-NQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCCC-CHHHHHHHHHcCCCceeECCcccccCCCCceEEEcCCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 6799999999999874 666654443 22 11 111 1111111111100 01124568999999
Q ss_pred HHHHHCCCCcCCcc----EEEEEeecCCC------------------C--------cc-cHHHHHHHHhcccCCCCceeE
Q 012353 63 NLLEKYKIDPKQIG----RLEVGSETVID------------------K--------SK-SIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 63 ~aL~~agi~~~~Id----~li~~T~s~~~------------------~--------~p-s~a~~l~~~LGl~g~~~~~~~ 111 (465)
++|+++|+++.+++ .|+++|..+.. . .+ ..+.+|...+|+.| +++
T Consensus 81 ~Al~dAGl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~G----p~~ 156 (406)
T PRK07967 81 QAIADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKG----VNY 156 (406)
T ss_pred HHHHHcCCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCC----Ccc
Confidence 99999998754322 24455532211 0 01 26677889999732 456
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------cc----------CC---CCC--------cccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------YA----------EG---PAR--------PTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------y~----------~~---~~~--------~t~GdGA 164 (465)
-+..+|++++.||..|..+|++|.. +.+||.++|... |. .. ..+ ...|+||
T Consensus 157 tvs~aCas~~~Ai~~A~~~ir~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGa 234 (406)
T PRK07967 157 SISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGG 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceE
Confidence 6789999999999999999999987 999999998631 10 00 112 2469999
Q ss_pred eeeeecCC
Q 012353 165 VVMLVGPD 172 (465)
Q Consensus 165 ~A~Ll~~~ 172 (465)
+++||++.
T Consensus 235 a~lvLe~~ 242 (406)
T PRK07967 235 GVVVVEEL 242 (406)
T ss_pred EEEEEeeH
Confidence 99999874
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8e-09 Score=106.81 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=82.9
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC--cccHHHHHHHHhcccCCCCceeEeec
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK--SKSIKTFLMQIFEKFGNTDIEGVDST 114 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~--~ps~a~~l~~~LGl~g~~~~~~~di~ 114 (465)
+|.++..+.- ..+++..+|+++|++++|+++|+++++||.|++++..+... ....+..+...+|+ ..+.++++.
T Consensus 7 vg~g~tpfgr-~~~~~~~eL~~eA~~~AL~dAgl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~gl---~~~p~~~v~ 82 (389)
T PRK07516 7 VGWAHTPFGK-LDAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPAL---RFKPATRVE 82 (389)
T ss_pred EeCCcceeee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCccccccchhHHHHHhcCC---CCCceeeec
Confidence 3555554432 35788999999999999999999999999999987643211 11122233344554 567889999
Q ss_pred CcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 115 ~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
++|++++.||..|..+|++|.+ +.|||+++|..
T Consensus 83 ~~CaSg~~Al~~A~~~I~sG~~--d~vLvvg~e~~ 115 (389)
T PRK07516 83 NACATGSAAVYAALDAIEAGRA--RIVLVVGAEKM 115 (389)
T ss_pred cccHHHHHHHHHHHHHHHCCCC--CEEEEEEehhh
Confidence 9999999999999999999987 99999999975
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-09 Score=107.84 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCc-----ccHHHHHHHHhcccCCCCceeEeecCcChhHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS-----KSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~-----ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~A 123 (465)
.+++..+|+++|++++|+++|+++++||.||+++++++... +..... ..+++ .+++++++.++|.+++.|
T Consensus 22 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~--~~~~~---~g~~~~~v~~~Casg~~a 96 (403)
T PRK06289 22 EGRDFADLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPAT--VHPAL---WGVPASRHEAACASGSVA 96 (403)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccccchHHHH--HhhcC---CCCceeecccccHHHHHH
Confidence 57889999999999999999999999999999988765322 111111 22243 245789999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 124 LFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 124 L~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|..|..+|++|.+ ++|||+++|..
T Consensus 97 l~~Aa~~I~sG~~--~~VLvvg~e~~ 120 (403)
T PRK06289 97 TLAAMADLRAGRY--DVALVVGVELM 120 (403)
T ss_pred HHHHHHHHHcCCC--CEEEEEEEEec
Confidence 9999999999987 99999998874
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-08 Score=100.30 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCcc----EEEEEeecCCC-----------------Ccc---------cHHHHHHHHhcc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIG----RLEVGSETVID-----------------KSK---------SIKTFLMQIFEK 102 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id----~li~~T~s~~~-----------------~~p---------s~a~~l~~~LGl 102 (465)
..-|++.|++++|+++|+++++++ .|+++|..+.. ..| ..+.+|...+|+
T Consensus 71 ~~~~~l~aa~eAl~dAGl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (399)
T cd00832 71 MTRLALAAADWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGM 150 (399)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCC
Confidence 356889999999999999876543 35666654321 001 245678888987
Q ss_pred cCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c------c--CC---CC--------
Q 012353 103 FGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y------A--EG---PA-------- 156 (465)
Q Consensus 103 ~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y------~--~~---~~-------- 156 (465)
.| +++-+..+|++++.||..|..+|++| . +.+||.++|... + . .. ..
T Consensus 151 ~G----p~~ti~~acaS~~~Al~~A~~~i~~G--~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~~~~p~~~~rPFd~~~~ 223 (399)
T cd00832 151 RG----PSGVVVAEQAGGLDALAQARRLVRRG--T-PLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAA 223 (399)
T ss_pred CC----CcccccchhHHHHHHHHHHHHHHHcC--C-CeEEEEeeccccCHHHHHHHHhccccCCCCCCCCCcCCCcCCCC
Confidence 32 45567899999999999999999999 6 799999998731 1 0 00 11
Q ss_pred CcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh
Q 012353 157 RPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL 231 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~ 231 (465)
..+.|+||+++||++.... .+...+.|..+. .|-.. . +. . ...+..+++..++..
T Consensus 224 G~~~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~--~d~~~---~---~~-~--------~~~~~~a~~~al~~a--- 283 (399)
T cd00832 224 GYVPGEGGAILVLEDAAAARERGARVYGEIAGYAAT--FDPPP---G---SG-R--------PPGLARAIRLALADA--- 283 (399)
T ss_pred CEeeeceEEEEEEeeHHHHHHCCCeEEEEEEeEEEc--CCCCC---C---CC-C--------HHHHHHHHHHHHHHc---
Confidence 1356999999999875321 111112222221 11000 0 00 1 122334444444443
Q ss_pred hcCCCCCCCCceeeccCCchHHHHHH
Q 012353 232 EGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 232 ~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
+++++||||+..|...++..+..
T Consensus 284 ---g~~~~~i~~v~~hgtgt~~~D~~ 306 (399)
T cd00832 284 ---GLTPEDVDVVFADAAGVPELDRA 306 (399)
T ss_pred ---CCCHHHccEEEeccCcCCCCCHH
Confidence 79999999999999887765544
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=106.46 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCccc-HHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps-~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+.+..+|+.+|++++|+++|++++|||.|++++.++....+. .+..+...+|+ ...+++++++.+|.+|..|+..|
T Consensus 67 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl--~~~~pa~~V~~~CaSG~~Ai~~A 144 (452)
T PLN02287 67 KDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGF--PETVPVRTVNRQCSSGLQAVADV 144 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCcccccchHHHHHHHHCCC--CCCcceEEEeccCchHHHHHHHH
Confidence 3678999999999999999999999999999998876554444 33456677787 44588999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~ 149 (465)
...|++|.+ +.|||++.|..
T Consensus 145 a~~I~sG~~--dvvLv~GvE~m 164 (452)
T PLN02287 145 AAAIKAGFY--DIGIGAGVESM 164 (452)
T ss_pred HHHHHcCCC--CeEEEEeEEec
Confidence 999999977 99999999876
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-07 Score=99.42 Aligned_cols=227 Identities=16% Similarity=0.184 Sum_probs=133.8
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--C---CCh-hhhh-hhh-----cC-eEEe---cCCC----CCC-HHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--G---ASK-GKYT-IGL-----GQ-ECMA---FCSE----VED-VISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g---~~~-~k~~-~Gi-----g~-r~~a---v~~~----~Ed-~~~la~~Aa 61 (465)
+.|.|.++|+.+|--. +.+++.+.. | +.+ .++. ..+ |+ +.+. +.++ .-| ..-|++.|+
T Consensus 129 ~rVvITG~G~vtp~G~-~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa 207 (540)
T PLN02787 129 RRVVVTGMGVVSPLGH-DPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207 (540)
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence 4699999999999874 666655443 2 211 1110 000 10 0000 0000 112 346889999
Q ss_pred HHHHHHCCCCcCC---cc----EEEEEeecCCC----------------Ccc---------cHHHHHHHHhcccCCCCce
Q 012353 62 TNLLEKYKIDPKQ---IG----RLEVGSETVID----------------KSK---------SIKTFLMQIFEKFGNTDIE 109 (465)
Q Consensus 62 ~~aL~~agi~~~~---Id----~li~~T~s~~~----------------~~p---------s~a~~l~~~LGl~g~~~~~ 109 (465)
+++|+++|++++. ++ .|+++|..+.. ..| ..+.+|...+|+. -+
T Consensus 208 ~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~----Gp 283 (540)
T PLN02787 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWM----GP 283 (540)
T ss_pred HHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCC----CC
Confidence 9999999997642 21 45667654321 001 2356788888873 34
Q ss_pred eEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc--c-----c------c---CC---CCC--------ccccc
Q 012353 110 GVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA--V-----Y------A---EG---PAR--------PTGGA 162 (465)
Q Consensus 110 ~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~--~-----y------~---~~---~~~--------~t~Gd 162 (465)
.+.+..||++++.||..|..+|++|.. +.+||.++|.. . + . +. ..+ .+.|+
T Consensus 284 ~~tistACASs~~Ai~~A~~~Ir~G~a--D~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GE 361 (540)
T PLN02787 284 NYSISTACATSNFCILNAANHIIRGEA--DVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGE 361 (540)
T ss_pred ccccccccccHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCccccc
Confidence 567789999999999999999999987 99999999963 1 1 0 00 112 34799
Q ss_pred ceeeeeecCCCC-----cccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 012353 163 AAVVMLVGPDAP-----VAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQF 236 (465)
Q Consensus 163 GA~A~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~ 236 (465)
||+++||++... ..+...+.|... .+.+....| ..+|+- +..+++..+++. |+
T Consensus 362 GAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p-------~p~g~g--------~~~am~~AL~~A------Gl 420 (540)
T PLN02787 362 GAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEP-------HPEGAG--------VILCIEKALAQS------GV 420 (540)
T ss_pred ceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCC-------CcCHHH--------HHHHHHHHHHHc------CC
Confidence 999999997431 111111222221 222222222 224432 222334444443 79
Q ss_pred CCCCCceeeccCCchHHHHHH
Q 012353 237 SLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 237 ~~~did~~~~H~p~~km~~~~ 257 (465)
+++||||+..|...++..+.+
T Consensus 421 ~p~dIdyInaHGTGT~~gD~~ 441 (540)
T PLN02787 421 SKEDVNYINAHATSTKAGDLK 441 (540)
T ss_pred CHHHCcEEEccCccCCCCCHH
Confidence 999999999999888765543
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=104.30 Aligned_cols=97 Identities=8% Similarity=0.017 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
+.+..+|+.+|++++|+++|+.+++||.+++++..+... .+.++..++..+|+ +..++++.+.++|.+|..|+..|.
T Consensus 24 ~~~~~eLa~~A~~~AL~~ag~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl--~~~~p~~~V~~aCaSG~~Al~~A~ 101 (391)
T PRK07661 24 TVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGL--PYTVPAITINRYCSSGLQSIAYGA 101 (391)
T ss_pred CCCHHHHHHHHHHHHHHhcCCChhHCCEEEEEeccccccccchHHHHHHHHcCC--CCCcceeehhhhhhHHHHHHHHHH
Confidence 457899999999999999988889999999997765433 36677779999997 335899999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|++|.+ +.+||+++|..+
T Consensus 102 ~~I~sG~~--d~vLv~G~E~ms 121 (391)
T PRK07661 102 ERIMLGHS--EAVIAGGAESMS 121 (391)
T ss_pred HHHHcCCC--CEEEEEEEeecc
Confidence 99999977 999999999764
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-07 Score=93.01 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHCCC--CcCCccEEEEEeecCCC-----------------Ccc---------cHHHHHHHHhcccC
Q 012353 53 VISMSLTAVTNLLEKYKI--DPKQIGRLEVGSETVID-----------------KSK---------SIKTFLMQIFEKFG 104 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi--~~~~Id~li~~T~s~~~-----------------~~p---------s~a~~l~~~LGl~g 104 (465)
...|+..|++++|+++|+ ++++++.++ ||..+.. ..| ..+.+|...+|+.|
T Consensus 4 ~~~~~~~a~~~a~~~a~~~~~~~r~Gv~~-G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~G 82 (342)
T PRK14691 4 WWRYKWITFHPSLTHADNTEKQERTATII-GAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKG 82 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEEE-ecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCCC
Confidence 456899999999999996 566776554 5543221 011 35677888888732
Q ss_pred CCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c----------cCCC---CC-------
Q 012353 105 NTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y----------AEGP---AR------- 157 (465)
Q Consensus 105 ~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y----------~~~~---~~------- 157 (465)
+.+-+..+|++++.||..|..+|++|.. +.+||.++|... + ...+ .+
T Consensus 83 ----p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~ 156 (342)
T PRK14691 83 ----PIGAPVTACAAGVQAIGDAVRMIRNNEA--DVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARD 156 (342)
T ss_pred ----CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCC
Confidence 4566789999999999999999999987 999999998631 1 0001 12
Q ss_pred -cccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhh
Q 012353 158 -PTGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK 230 (465)
Q Consensus 158 -~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~ 230 (465)
.+.||||+++||.+.... .+...+.+.... +......| ..++ .....+++..+++.
T Consensus 157 G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p-------~p~~--------~~~~~ai~~AL~~A-- 219 (342)
T PRK14691 157 GFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSG-------AEDG--------DGAYRAMKIALRQA-- 219 (342)
T ss_pred CccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCC-------CCCH--------HHHHHHHHHHHHHc--
Confidence 347999999999875321 010112222111 11111111 1122 12223444444444
Q ss_pred hhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 231 LEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 231 ~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
+++++|||++..|-.+++..+.+
T Consensus 220 ----gl~p~dIdyIeaHgtgT~~~D~~ 242 (342)
T PRK14691 220 ----GITPEQVQHLNAHATSTPVGDLG 242 (342)
T ss_pred ----CCCHHHCCEEEecCCCCcCCCHH
Confidence 78999999999999998876554
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=102.63 Aligned_cols=96 Identities=10% Similarity=0.110 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCcCCccEEEEEeecCC-CCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKY-KIDPKQIGRLEVGSETVI-DKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~T~s~~-~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+.+..+|+.+|++++|+++ |+++++||.|++++..+. ...+..+..+...+|+ ..++++.+.++|++|..|+..|
T Consensus 24 ~~~~~eL~~~A~~~AL~da~gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl---~~~p~~~v~~~caSG~~av~~A 100 (406)
T PRK07851 24 DMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGY---DFLPGTTVNRYCSSSLQTTRMA 100 (406)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEcccccccccCCHHHHHHHHcCC---CCCCeeeeeccchhHHHHHHHH
Confidence 5678999999999999997 999999999999864432 2234566789999997 3478889999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.+ +.|||+++|..+
T Consensus 101 a~~I~sG~~--d~vLv~G~e~~s 121 (406)
T PRK07851 101 FHAIKAGEG--DVFISAGVETVS 121 (406)
T ss_pred HHHHHCCCC--CEEEEeeEEecc
Confidence 999999987 999999999863
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=101.30 Aligned_cols=107 Identities=20% Similarity=0.174 Sum_probs=85.1
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCc
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~a 116 (465)
+|.+...+.- ..+.+..+|+.+|++++|+++|+++++||.|++++.............+.+.+|+ . ..+++.+.++
T Consensus 12 vG~g~tp~~~-~~~~~~~~L~~ea~~~AL~dagl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl--~-~~~~~~v~~~ 87 (398)
T PRK06157 12 LGMGCTKFGE-RWDAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRL--P-NIPVTRVENF 87 (398)
T ss_pred EEeccccccc-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchhHHHHHHcCC--C-CCCEEEEecc
Confidence 3555444321 2356789999999999999999999999999998765332222334678889997 3 4778889999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 117 C~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|.+++.||..|...|++|.+ +.|||+++|..
T Consensus 88 c~sg~~ai~~A~~~I~sG~~--d~vlv~G~e~~ 118 (398)
T PRK06157 88 CATGSEAFRGAVYAVASGAY--DIALALGVEKL 118 (398)
T ss_pred cHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 99999999999999999977 99999999975
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-07 Score=94.09 Aligned_cols=219 Identities=12% Similarity=0.043 Sum_probs=131.6
Q ss_pred CceeEEeEEEEecCCceechHHHHHhc--CCCh-----hh---hhhh-hcC---eEEecCCC----C-CCHHHHHHHHHH
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHD--GASK-----GK---YTIG-LGQ---ECMAFCSE----V-EDVISMSLTAVT 62 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~-----~k---~~~G-ig~---r~~av~~~----~-Ed~~~la~~Aa~ 62 (465)
+++|-|.+||+..|--. +.+++.+.. |.+. .. +..+ +++ +.. ++.. . .....|++.|++
T Consensus 5 ~~rVvITGiG~vsp~G~-~~e~~w~aL~~G~sg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~r~~~~a~~Aa~ 82 (398)
T PRK06519 5 PNDVVITGIGLVSSLGE-GLDAHWNALSAGRPQPNVDTETFAPYPVHPLPEIDWSQQ-IPKRGDQRQMETWQRLGTYAAG 82 (398)
T ss_pred CCCEEEEcceEECCCCC-CHHHHHHHHHcCCCCCCCCcccccCcCcccccccChhhc-CCchhhhhccCHHHHHHHHHHH
Confidence 35799999999998765 555554443 3321 00 0000 010 000 1110 1 125668999999
Q ss_pred HHHHHCCCCcC-----CccEEEEEeecCCC-----------------------------Ccc---------cHHHHHHHH
Q 012353 63 NLLEKYKIDPK-----QIGRLEVGSETVID-----------------------------KSK---------SIKTFLMQI 99 (465)
Q Consensus 63 ~aL~~agi~~~-----~Id~li~~T~s~~~-----------------------------~~p---------s~a~~l~~~ 99 (465)
++|+++|+++. +++ |+++|..+.. ..| ..+..|...
T Consensus 83 ~Al~dAGl~~~~~~~~r~G-vivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~ 161 (398)
T PRK06519 83 LALDDAGIKGNEELLSTMD-MIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGNISIV 161 (398)
T ss_pred HHHHHcCCCCCCCCccceE-EEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHHHHHH
Confidence 99999998543 333 4555544320 011 256678888
Q ss_pred hcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c------c------cCC---C--------
Q 012353 100 FEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y------AEG---P-------- 155 (465)
Q Consensus 100 LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~------y------~~~---~-------- 155 (465)
+|+.| +.+.+..+|++++.||..|..+|++|.. +.+||.++|.. . | ... +
T Consensus 162 ~gl~G----p~~ti~~acaSg~~Ai~~A~~~I~~G~~--d~~lvGG~d~~~~~~~~~~~~~~~~ls~~~~~p~~d~~~~~ 235 (398)
T PRK06519 162 HKVTG----SSRTFMGEESAGVSAIEIAFARIASGQS--DHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGED 235 (398)
T ss_pred hCCCC----ccccccCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHcCccCCCCCCchhccCccC
Confidence 99733 4567889999999999999999999977 99999999863 1 1 000 0
Q ss_pred -CCcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhh
Q 012353 156 -ARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE 229 (465)
Q Consensus 156 -~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~ 229 (465)
.-...|.||+++||++.+.. .+...+.|..+ |.. +. .+ ..+.++++..++..
T Consensus 236 r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~----d~~--------~~-~~--------~~~~~am~~AL~~A- 293 (398)
T PRK06519 236 GGGFILGSGGAFLVLESREHAEARGARPYARISGVES----DRA--------RR-AP--------GDLEASLERLLKPA- 293 (398)
T ss_pred CCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEee----cCC--------CC-Ch--------HHHHHHHHHHHHHC-
Confidence 11346999999999985421 11111223211 111 11 11 12334555555544
Q ss_pred hhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 230 KLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 230 ~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
++ ++||||+..|...+++.+.+
T Consensus 294 -----gl-~~~IdyI~ahgtgT~~~D~~ 315 (398)
T PRK06519 294 -----GG-LAAPTAVISGATGAHPATAE 315 (398)
T ss_pred -----CC-cccCCEEEeCCCCCCCccHH
Confidence 78 79999999999888766554
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-07 Score=93.11 Aligned_cols=176 Identities=11% Similarity=0.134 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHCCC---CcCCccEEEEEeecCCC-----------------Cc--------c-cHHHHHHHHhcccC
Q 012353 54 ISMSLTAVTNLLEKYKI---DPKQIGRLEVGSETVID-----------------KS--------K-SIKTFLMQIFEKFG 104 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi---~~~~Id~li~~T~s~~~-----------------~~--------p-s~a~~l~~~LGl~g 104 (465)
.-|++.|++++|+++|+ ++++++. +++|..+.. .. + ..+.+|...+|+.
T Consensus 84 ~~~~l~aa~~AledAg~~~~~~~r~Gv-~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~- 161 (418)
T PRK07910 84 QRMSTVLGRRVWENAGSPEVDTNRLMV-SIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAK- 161 (418)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccEEE-EEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCC-
Confidence 45888999999999996 4555654 455543211 00 1 2455667777762
Q ss_pred CCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c-------c------CCCCC-------
Q 012353 105 NTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y-------A------EGPAR------- 157 (465)
Q Consensus 105 ~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y-------~------~~~~~------- 157 (465)
-..+.+..+|++++.||..|..+|++|.. +.+||.++|... | . ....+
T Consensus 162 ---G~~~ti~taCaS~~~Al~~A~~~I~~G~~--d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~ 236 (418)
T PRK07910 162 ---AGVITPVSACASGSEAIAQAWRQIVLGEA--DIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRD 236 (418)
T ss_pred ---CCcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCC
Confidence 23456789999999999999999999977 999999999731 1 0 00112
Q ss_pred -cccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhh
Q 012353 158 -PTGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK 230 (465)
Q Consensus 158 -~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~ 230 (465)
...|+||+++||.+.... .+...+.|+... +.+.+..|. .+|. ...++++..+++.
T Consensus 237 G~v~gEGaa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~-------~~~~--------~~~~a~~~Al~~a-- 299 (418)
T PRK07910 237 GFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPD-------PNGE--------RAGHAMTRAIELA-- 299 (418)
T ss_pred CEeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCC-------CCHH--------HHHHHHHHHHHHh--
Confidence 347999999999875321 111112222221 111111121 1221 1223344444443
Q ss_pred hhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 231 LEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 231 ~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
+++++|||++..|..+++..+.+
T Consensus 300 ----gi~~~did~ie~hgtgt~~~D~~ 322 (418)
T PRK07910 300 ----GLTPGDIDHVNAHATGTSVGDVA 322 (418)
T ss_pred ----CCCHHHCCEEEcCCcCCCCCCHH
Confidence 78999999999999888765543
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=5e-08 Score=101.98 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+.+..+|+.+|++.+|+++|++|++||.+++|+..+.-..+.++..+...+|+ +..++++.++++|++|+.|+..|.
T Consensus 25 ~~~~~~eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl--~~~~P~~tV~~aCaSG~~Ai~~Aa 102 (428)
T PRK08963 25 HGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGM--NVHTDAYSVSRACATSFQAVANVA 102 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCC--CCCCcceeehhhhHHHHHHHHHHH
Confidence 466789999999999999999999999999999865433234456567788897 446889999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|++|.+ +.|||++.|..+
T Consensus 103 ~~I~sG~~--dvvLvgG~Esms 122 (428)
T PRK08963 103 ESIMAGTI--DIGIAGGADSSS 122 (428)
T ss_pred HHHHCCCC--CEEEEecccccC
Confidence 99999977 999999999764
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.4e-08 Score=99.12 Aligned_cols=97 Identities=8% Similarity=0.039 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+.+..+|+.+|++++|+++|+++++||.+++++..+.......+..+...+|+ +.+++++.+.++|.+++.|+..|..
T Consensus 23 ~~~~~~L~~~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~v~~~caSg~~av~~Aa~ 100 (388)
T PRK06366 23 KIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGL--PFGVTKYTVNVVCASGMLAVESAAR 100 (388)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcHHHHHHHHCCC--CCCCcceeeechhhHHHHHHHHHHH
Confidence 36789999999999999999999999999998764322123446678888997 4457888888999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
.|++|.+ +.|||++.|..+
T Consensus 101 ~I~sG~~--d~vla~G~e~ms 119 (388)
T PRK06366 101 EIMLGER--DLVIAGGMENMS 119 (388)
T ss_pred HHhcCCC--CEEEEEeeEccc
Confidence 9999977 999998889753
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=98.58 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
+.+..+|+.+|++++|+++|+++++||.+++|+..+.-. .+.++..+...+|+ +..++++.+.++|++|..|+..|.
T Consensus 23 ~~~~~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--p~~~p~~tV~~~CaSG~~Ai~~A~ 100 (401)
T PRK08131 23 SVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGL--PVTVPGQTVNRLCASGLAAVIDAA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHhcCC--CCCCceeeeechhhhHHHHHHHHH
Confidence 677899999999999999999999999999998753322 34556667788887 446889999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|++|.+ +.+||++.|..+
T Consensus 101 ~~I~sG~~--dvvlagG~Esms 120 (401)
T PRK08131 101 RAITCGEG--DLYLAGGVESMS 120 (401)
T ss_pred HHHHCCCC--CEEEEEEecCCC
Confidence 99999977 999999999764
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=97.43 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCc-ccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS-KSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~-ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
+.++.+|+.+|++.+|+++|++|++||.+++|+....... ...+-.+...+|+ ..+++++.+.++|++|..|+..|.
T Consensus 23 ~~~~~eL~~~a~~~aL~~agi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl--~~~~p~~tV~~~CaSG~~A~~~A~ 100 (387)
T PRK07850 23 GLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGL--PYHVGATTIDCQCGSAQQANHLVA 100 (387)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchHHHHHHHhCCC--CCCCceEEEecccccHHHHHHHHH
Confidence 5578999999999999999999999999999875432221 2244455666887 446899999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|++|.. +.+||++.|.++
T Consensus 101 ~~I~sG~~--dvvla~G~E~mS 120 (387)
T PRK07850 101 GLIAAGAI--DVGIACGVEAMS 120 (387)
T ss_pred HHHHCCCC--CEEEEEeEecCC
Confidence 99999977 999999999984
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=97.25 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+.+..+|+++|++.+|+++|+++++||.|++++.......+..+..+...+|+ +.+++++.+.++|.+++.|+..|..
T Consensus 22 ~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl--~~~~p~~~v~~~caSg~~av~~Aa~ 99 (394)
T PLN02644 22 SLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAALGAGL--PPSTICTTVNKVCASGMKAVMLAAQ 99 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCC--CCCCceEEEeccchHHHHHHHHHHH
Confidence 46789999999999999999999999999988654322223344457788897 4567778889999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
.|++|.+ +.|||++.|..+
T Consensus 100 ~I~sG~~--d~vlv~G~E~~s 118 (394)
T PLN02644 100 SIQLGIN--DVVVAGGMESMS 118 (394)
T ss_pred HHHcCCC--CEEEEEeEEecC
Confidence 9999977 999999988764
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=98.81 Aligned_cols=107 Identities=8% Similarity=-0.057 Sum_probs=82.8
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHH-HHHHHHhcccCCCCceeEeecC
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIK-TFLMQIFEKFGNTDIEGVDSTN 115 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a-~~l~~~LGl~g~~~~~~~di~~ 115 (465)
.|++...+.-...+.+..+|+++|++.+|+++|+++++||.+++++.+........+ ..+...||+ +..+++.+.+
T Consensus 21 vG~g~Tpfgr~~~~~~~~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lGl---~~~~~~~v~~ 97 (430)
T PRK06365 21 VAAGVTKFDKASPYMDFRERVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLGL---VPKPSKRIEG 97 (430)
T ss_pred EEeeecCccccCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEecccccccccchhhHHHHHhcCC---CCCceEEEeC
Confidence 455555433212356778999999999999999999999998877544322222222 346789997 3477888999
Q ss_pred cChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 116 ACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 116 aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
+|.++..|+..|...|++|.+ +.|||+++|.
T Consensus 98 ~~aSg~~ai~~A~~~I~sG~~--~~vLv~G~e~ 128 (430)
T PRK06365 98 GGATGGLAFQAGYEEIASGRM--DCVAVYGFET 128 (430)
T ss_pred CcHHHHHHHHHHHHHHHcCCC--CEEEEEEeee
Confidence 999999999999999999977 9999999884
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=99.22 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+.+..+|+.+|++.+|+++++++++||.+++++..+....+.++-.+.-..|+ ...++++.+.++|++|..|+..|..
T Consensus 28 ~~~~~~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~~~~~ar~~~l~aGl--~~~~p~~~V~~~CaSG~~A~~~a~~ 105 (430)
T TIGR02446 28 GIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGM--NVHTDAYSVTRACATSFQSAVNVAE 105 (430)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCccchHHHHHHHhCCC--CCCCchhhhhhhhhHHHHHHHHHHH
Confidence 56889999999999999999999999999999765432222333333333587 4478999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
.|++|.+ +.+||++.|..+
T Consensus 106 ~I~sG~~--dvvla~G~E~mS 124 (430)
T TIGR02446 106 SIMAGAI--DIGIAGGADSSS 124 (430)
T ss_pred HHHCCCC--CEEEEeeeEccc
Confidence 9999977 999999999985
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=98.32 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+..+.+|+.+|++.+|+++|++|++||.|++|+..+.......+..+...+|+ +..++++.+.++|.+|+.|+..|..
T Consensus 24 ~~~~~~L~~~a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~r~~~~~~Gl--~~~~p~~~V~~~CaSG~~Ai~~A~~ 101 (392)
T PRK06633 24 TTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTLIHAGI--PKEVPGYTINKVCGSGLKSVALAAN 101 (392)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCccccccHHHHHHHHHCCC--CCCccchhhcchhHHHHHHHHHHHH
Confidence 66799999999999999999999999999999765433334556667778887 4468999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
.|++|.+ +.+||++.|..+
T Consensus 102 ~I~sG~~--dvvla~G~E~ms 120 (392)
T PRK06633 102 SIMTGDN--EIVIAGGQENMS 120 (392)
T ss_pred HHHcCCC--CEEEEcccccCC
Confidence 9999977 999999999874
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=97.48 Aligned_cols=97 Identities=8% Similarity=0.114 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+.++.+|+..|++.+|++ +|+++++||.|++|+..+... .+..+-.+...+|+ +.+++++.|.++|++|..|+..|
T Consensus 23 ~~~~~~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--~~~vP~~tV~~aCaSG~~Ai~~A 100 (401)
T PRK09050 23 SVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGL--PVSVPGTTINRLCGSGMDAVGTA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCC--CCCCceEEEecccccHHHHHHHH
Confidence 677899999999999996 799999999999997654322 34566678889998 56799999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.. +.+||++.|.++
T Consensus 101 ~~~I~sG~~--dvvlagGvEsmS 121 (401)
T PRK09050 101 ARAIKAGEA--ELMIAGGVESMS 121 (401)
T ss_pred HHHHHCCCC--CEEEEecccccc
Confidence 999999977 999999999875
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=96.73 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+.++.+|+..|++.+|++ ++++|++||.||+|+..+... .+..+..+...+|+ +.+++++.|.++|++|+.|+.+|
T Consensus 23 ~~~~~~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl--~~~vp~~tV~~~CaSG~~Av~~A 100 (400)
T PRK13359 23 SVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGL--PHGVPGSTINRLCGSGMDAVGVA 100 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEeccchhHHHHHHHH
Confidence 457899999999999997 599999999999997764322 36678888889998 55699999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVY 151 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y 151 (465)
...|++|.. +.+|+++.|..+.
T Consensus 101 ~~~I~sG~~--divlagGvEsmS~ 122 (400)
T PRK13359 101 ARAIKSGEA--ALMIAGGVESMSR 122 (400)
T ss_pred HHHHHcCCC--CEEEEeeeeccCC
Confidence 999999977 9999999998753
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-07 Score=96.70 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCC--ccEEEEEeecCCC--CcccHHHHHHHHhccc----CCCCceeEeecCcChhH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQ--IGRLEVGSETVID--KSKSIKTFLMQIFEKF----GNTDIEGVDSTNACYGG 120 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~--Id~li~~T~s~~~--~~ps~a~~l~~~LGl~----g~~~~~~~di~~aC~gg 120 (465)
.+.+..+|+.+|++++|+++|+++++ ||.+++++..... ..+..+..+...+|+. |...++++.+.++|.+|
T Consensus 44 ~~~s~~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caSG 123 (438)
T PTZ00455 44 ENKTLEELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACASG 123 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHHH
Confidence 35678999999999999999999999 9999998764322 2344566666555541 12567888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEEecccc
Q 012353 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 121 ~~AL~~A~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|+..|...|++|.+ +.|||++.|..+
T Consensus 124 ~~Ai~~A~~~I~sG~~--dvvlv~G~E~ms 151 (438)
T PTZ00455 124 GLAVQSAWEALLAGTS--DIALVVGVEVQT 151 (438)
T ss_pred HHHHHHHHHHHHCCCC--CEEEEEEEeecc
Confidence 9999999999999977 999999999864
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=94.83 Aligned_cols=97 Identities=10% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCCC-CcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVID-KSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~~-~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+.++.+|+.+|++.+|++ +++++++||.|++|+....- ..+..+..+...+|+ ..+++++.|.++|.+|+.|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--~~~~p~~~V~~~CaSG~~Ai~~a 99 (400)
T TIGR02430 22 SVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGL--PVSVPGTTVNRLCGSGLDAIGMA 99 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEeechhhhHHHHHHHH
Confidence 667899999999999995 69999999999999765322 134567778899998 44699999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.. +.+||++.|..+
T Consensus 100 ~~~I~sG~~--d~~la~G~E~ms 120 (400)
T TIGR02430 100 ARAIKAGEA--DLLIAGGVESMS 120 (400)
T ss_pred HHHHHCCCC--CEEEEecccccc
Confidence 999999977 999999999884
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-07 Score=93.96 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
+.++.+|+.+|++.+|+++++++++||.+++++..+... .+..+....-.-|+ ..+++++.+.++|++|..|+..|.
T Consensus 23 ~~~~~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl--~~~vP~~tV~~~CaSG~~Ai~~A~ 100 (390)
T PRK06504 23 GWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKL--PESVPGTSIDRQCGSSQQALHFAA 100 (390)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEechhhHHHHHHHHHH
Confidence 667899999999999999999999999999997653221 23333222222365 457899999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEecccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|++|.+ +.+||++.|..+
T Consensus 101 ~~I~sG~~--dvvLagGvEsmS 120 (390)
T PRK06504 101 QAVMSGTM--DIVIAAGVESMT 120 (390)
T ss_pred HHHHCCCC--CEEEEeeeeecC
Confidence 99999977 999999999874
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-07 Score=93.38 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+.+..+|+..|++.+|++ +|+++++||.+++++...... .+..+..+...+|+ +..++++.+.++|++|..|+..|
T Consensus 24 ~~~~~~L~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl--~~~~p~~~V~~~caSG~~Ai~~A 101 (387)
T PRK08947 24 NVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGI--PHSVPAVTVNRLCGSSMQALHDA 101 (387)
T ss_pred CCCHHHHHHHHHHHHHHhccCcChHHhCeEEEEeccccccccccHHHHHHHHcCC--CCCCcceeeechhHHHHHHHHHH
Confidence 667899999999999997 699999999999997653322 23455567777887 44688899999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.+ +.|||++.|..+
T Consensus 102 ~~~I~sG~~--d~vlv~G~E~ms 122 (387)
T PRK08947 102 ARAIMTGDG--DVFLIGGVEHMG 122 (387)
T ss_pred HHHHHCCCC--CEEEEccccccc
Confidence 999999987 999999999764
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-07 Score=92.88 Aligned_cols=102 Identities=5% Similarity=-0.052 Sum_probs=81.3
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCc
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~a 116 (465)
+|+|+..+.. .++.+..+|+.+|++++|+++|++++|||.+++.+..+. .....+.+.||+ ...+...+.++
T Consensus 10 vG~g~t~~~~-~~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~~~----~~~~~~~~~lGl---~~~~~~~v~~g 81 (388)
T PRK08142 10 VGAYEHPTRK-APDKSVAQLHAEVAKGALADAGLSLADVDGYFCAGDAPG----LGPASMVDYLGL---KLRHVDSTETG 81 (388)
T ss_pred EEEeecccee-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCCC----ccHHHHHHhCCC---CCeeeccccCC
Confidence 5778776653 356778999999999999999999999999875322211 112458899997 33566777899
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 117 C~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
|.++..++..|...|++|.+ +.||||+.|.
T Consensus 82 g~s~~~a~~~A~~~I~sG~~--d~vLvvg~e~ 111 (388)
T PRK08142 82 GSSYLAHVGHAAQAIAAGKC--SVALITLAGR 111 (388)
T ss_pred cHHHHHHHHHHHHHHHcCCC--CEEEEEeeee
Confidence 99999999999999999988 9999999775
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.3e-07 Score=92.37 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+.+..+|+.+|++.+|+++|+++++||.+++|+..+....+..+..+.-..|+ ....+++.+.++|++|+.|+..|..
T Consensus 28 ~~~~~eL~~~a~~~al~~agl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl--~~~~p~~~V~~~CaSG~~ai~~A~~ 105 (427)
T PRK09268 28 DASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSAL--SPYTPAYDLQQACGTGLEAAILVAN 105 (427)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCccccHHHHHHHHcCC--CCCCceeeeechhhHHHHHHHHHHH
Confidence 56789999999999999999999999999999765422122334443333444 3457889999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
.|++|.. +.+||++.|..+
T Consensus 106 ~I~sG~~--d~vlvgG~E~ms 124 (427)
T PRK09268 106 KIALGQI--DSGIAGGVDTTS 124 (427)
T ss_pred HHHCCCC--CEEEEeeEEccC
Confidence 9999977 999999999764
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.1e-07 Score=91.67 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecC-CCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 51 EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETV-IDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 51 Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~-~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
.+..+|+.+|++++|+++|+++++||.|++++... ....+..+....-.+|+ ...+.++.+.++|.+++.|+..|..
T Consensus 24 ~~~~~L~~~a~~~al~dagl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl--~~~~p~~~v~~acaSg~~Av~~Aa~ 101 (382)
T PRK07801 24 VHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGL--PEEVPGVTVDRQCGSSQQAIHFAAQ 101 (382)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCC--CCCCceeeecchhhhHHHHHHHHHH
Confidence 67899999999999999999999999999985421 11112223322224565 3457788889999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc
Q 012353 130 WVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~ 149 (465)
.|++|.+ +.|||++.|..
T Consensus 102 ~I~sG~~--d~vLv~G~e~m 119 (382)
T PRK07801 102 AVMSGTQ--DLVVAGGVQNM 119 (382)
T ss_pred HHHCCCC--CEEEEcchhhh
Confidence 9999987 99999988854
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-07 Score=92.06 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+.++.+|+.+|++.+|++ +|++|++||.+++|+...... ....+..+.-..|+ ...++++.++++|++|..|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~agl~~~~Id~v~~G~~~~~~~~g~~~ar~~~~~~g~--~~~~p~~tV~~~CaSG~~Ai~~A 99 (385)
T TIGR02445 22 NTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQI--PHTSAAVTVNRLCGSSMQALHDA 99 (385)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEecccccccccchHHHHHHHHCCC--CCCcchhhhhhhhHHHHHHHHHH
Confidence 667899999999999997 599999999999997753221 22344444445566 45588899999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.. +.+||++.|.++
T Consensus 100 a~~I~sG~~--d~vlagG~E~ms 120 (385)
T TIGR02445 100 ARAIMTGDA--DVCLVGGVEHMG 120 (385)
T ss_pred HHHHHCCCC--CEEEEeeehhcc
Confidence 999999977 999999999764
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=83.50 Aligned_cols=114 Identities=23% Similarity=0.215 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCcc-----EEEEEeecCCC---------------Cc--------c-cHHHHHHHHhccc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIG-----RLEVGSETVID---------------KS--------K-SIKTFLMQIFEKF 103 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id-----~li~~T~s~~~---------------~~--------p-s~a~~l~~~LGl~ 103 (465)
..-|++.|+.+||+++|+++.+++ .|++||..+.+ .. + ..+..|+..+|+.
T Consensus 87 ~~~~~l~aa~~Al~dAg~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~ 166 (254)
T PF00109_consen 87 QSRLALAAAREALEDAGLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGLR 166 (254)
T ss_dssp HHHHHHHHHHHHHHHHTSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB-
T ss_pred hhhHHHHHhhhhcccccccccccccccceeeccccccccccccccccccccccccccccccCcccccccccchhhhcCCC
Confidence 468999999999999999885332 24567665521 11 1 2567899999983
Q ss_pred CCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c------c------cC-CC--------CCcccc
Q 012353 104 GNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y------AE-GP--------ARPTGG 161 (465)
Q Consensus 104 g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~------y------~~-~~--------~~~t~G 161 (465)
-+++-+..+|++++.||..|..+|++|.+ +.|||.++|.. . + .. .+ .....|
T Consensus 167 ----G~~~tv~~acaSgl~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~~~pf~~~~~G~v~g 240 (254)
T PF00109_consen 167 ----GPSYTVSTACASGLAALEAAYRAIRSGEA--DVALVGGVDAPLSPFILAGFSALGALSADGPCRPFDPFADGFVLG 240 (254)
T ss_dssp ----SSEEEEE-GGGHHHHHHHHHHHHHHTTSS--SEEEEEEEE--SSHHHHHHHHHTTBB-TTSGGGSTBTTB-SB-BB
T ss_pred ----Cccccccccccccccccchhccccccccc--cccccccccccccccccccccccccccccccccccCCCCCCEEEE
Confidence 24566789999999999999999999987 99999999943 1 1 11 11 124589
Q ss_pred cceeeeeecCC
Q 012353 162 AAAVVMLVGPD 172 (465)
Q Consensus 162 dGA~A~Ll~~~ 172 (465)
+||+++||.+.
T Consensus 241 EGa~~~vLe~~ 251 (254)
T PF00109_consen 241 EGAGALVLERL 251 (254)
T ss_dssp -EEEEEEEEEH
T ss_pred CceEEEEEEEh
Confidence 99999999763
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=89.52 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=78.8
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCc
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~a 116 (465)
+|+|+..+.- .++.+..+|+.+|++++|+++|++++|||.+++.+.. ..+. ..|.+.||+ ........+.++
T Consensus 9 vG~g~t~~~r-~~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~---~~~~--~~l~~~lGl--~~~~~~~~v~~g 80 (386)
T PRK07855 9 VGIGATEFSK-NSGRSELRLACEAVLAALDDAGLAPSDVDGLVTFTMD---TNPE--IAVARALGI--GELKFFSRIHYG 80 (386)
T ss_pred EEeeeccccc-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCc---cccH--HHHHHHCCC--CCCcceeeecCC
Confidence 5777665432 2456789999999999999999999999999874432 1222 568899997 332344577899
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCEEEEEEe
Q 012353 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCT 146 (465)
Q Consensus 117 C~gg~~AL~~A~~~l~sg~~~~~~aLVVas 146 (465)
|.++..+|..|...|++|.+ +.|||+++
T Consensus 81 g~sg~~~~~~A~~~I~sG~~--d~vLv~g~ 108 (386)
T PRK07855 81 GGAACATVQQAAMAVATGVA--DVVVCYRA 108 (386)
T ss_pred cHHHHHHHHHHHHHHHCCCC--CEEEEEee
Confidence 99999999999999999988 99999876
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=90.27 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=83.3
Q ss_pred hhhcCeEEecCCCCC--CHHHHHHHHHHHHHHHCCCC--cCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEe
Q 012353 37 IGLGQECMAFCSEVE--DVISMSLTAVTNLLEKYKID--PKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 37 ~Gig~r~~av~~~~E--d~~~la~~Aa~~aL~~agi~--~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~d 112 (465)
+|+||..+.-..++. +..+|+.+|++++|+++|++ +++||.|++++.... ........|++.||+ .+ .....
T Consensus 9 VGvG~t~~~~~~~~~~~s~~~L~~eA~~~Al~DAGl~~~~~dID~v~v~~~~~~-~~~~~~~~la~~lGl--~p-~~~~~ 84 (498)
T PRK08257 9 VGVGQVTERPDDPAYGLEPVDLMAAAARAAAADAGADAVLEAIDSVAVVNQLSW-RYRDPPGLLAERLGA--DP-ARTVY 84 (498)
T ss_pred EEeeecccccCCcccCCCHHHHHHHHHHHHHHhcCCCcCHHHCCEEEEeccccc-cccCHHHHHHHHcCC--CC-cceeE
Confidence 588886654212232 78999999999999999999 999999998755322 122345789999997 33 34455
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
...+|.++..+|..|...|++|.+ +.|||+++|..
T Consensus 85 ~~~GG~s~~~~v~~Aa~~IasG~a--dvVLv~G~E~~ 119 (498)
T PRK08257 85 SPVGGNSPQRLVNEAALRIAAGEA--DVALVAGAEAQ 119 (498)
T ss_pred ecCCCHHHHHHHHHHHHHHHCCCC--CEEEEeeeeec
Confidence 667888999999999999999987 99999999975
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-05 Score=95.90 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=87.7
Q ss_pred HHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------cc-------CCC--
Q 012353 92 IKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------YA-------EGP-- 155 (465)
Q Consensus 92 ~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y~-------~~~-- 155 (465)
++.+|...||+.| +++-+..||++++.||..|..+|++|.+ +.+||.++|... +. ++.
T Consensus 185 ~A~RIS~~f~L~G----ps~tVdtACsSSL~Al~~A~~~L~~G~~--D~alvGGv~~~~~p~~~~~fs~~~~lS~~g~cr 258 (2582)
T TIGR02813 185 ISGRIANRFDLGG----MNCVVDAACAGSLAAIRMALSELLEGRS--EMMITGGVCTDNSPFMYMSFSKTPAFTTNEDIQ 258 (2582)
T ss_pred HHHHHHHHhCCCC----CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecceeeCCHHHHHHHHhccCcCCCCCcc
Confidence 5778889999833 4567889999999999999999999987 999998887631 11 111
Q ss_pred ------CCcccccceeeeeecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHH
Q 012353 156 ------ARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCL 224 (465)
Q Consensus 156 ------~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~ 224 (465)
+....|+|++++||.+-... .+..-+.|+...+ |-.... ..-|..+|+ .+++++.
T Consensus 259 pFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~--DG~~~~--itaP~~~gq----------~~~i~~A 324 (2582)
T TIGR02813 259 PFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASS--DGKFKS--IYAPRPEGQ----------AKALKRA 324 (2582)
T ss_pred CCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcC--CCCCCC--CcCCCHHHH----------HHHHHHH
Confidence 12457999999999874321 1111123332221 101000 001222232 2233333
Q ss_pred HHHhhhhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 225 CSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 225 ~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
++.. |++++||+|+-.|..+++..+.+
T Consensus 325 l~~A------gi~p~~I~yIeaHGTGT~~gD~~ 351 (2582)
T TIGR02813 325 YDDA------GFAPHTCGLIEAHGTGTAAGDVA 351 (2582)
T ss_pred HHHc------CCCHHHCCEEEecCCCCCCCCHH
Confidence 3333 89999999999999888776654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-05 Score=72.63 Aligned_cols=111 Identities=18% Similarity=0.118 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVE 132 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~ 132 (465)
-..|..+|++.+|+++++.++|||.++-|--...- -.+++.++.|++ +.+-+=.||+....+|.+|..+|.
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLlnQ~---i~s~f~ar~l~i------Pf~GlygACST~~e~l~laa~~vd 121 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDIDYLFAGDLLNQI---ISSSFAARDLGI------PFLGLYGACSTMMESLALAAMLVD 121 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-SEEEEEETTCCC---CHHHHHHHHHT--------EEEB--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCeEEEehhhhhhh---HHHHHHHHhcCC------CccchhhHHHHHHHHHHHHHHHHh
Confidence 46888999999999999999999999865433322 357789999984 567788999999999999999999
Q ss_pred cCCCCCCEEEEEEeccc-------cccC--CCCC-cc---cccceeeeeecCCCC
Q 012353 133 SSSWDGRYGLVVCTDSA-------VYAE--GPAR-PT---GGAAAVVMLVGPDAP 174 (465)
Q Consensus 133 sg~~~~~~aLVVasD~~-------~y~~--~~~~-~t---~GdGA~A~Ll~~~~~ 174 (465)
+|.. ++||+.+|-.. +|.. +.-+ +| -=-||.|+||++...
T Consensus 122 gg~a--~~vla~tSSH~~tAERQfR~P~EyG~Qrp~tAqwTVTGaGa~il~~~~~ 174 (329)
T PF07451_consen 122 GGFA--DYVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAAILSKEGS 174 (329)
T ss_dssp TTS---SEEEEEEEE-CCHHHHHT---GGGT----TT--EE--EEEEEEEESS--
T ss_pred CCCc--ceEEEEeccccchhhhhccCchhccCCCCCcccEEEeceEEEEEecCCC
Confidence 9987 99999887654 3321 1111 11 234566889988753
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=85.81 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=75.6
Q ss_pred hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCC-CCc-CCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec
Q 012353 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYK-IDP-KQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST 114 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~ag-i~~-~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~ 114 (465)
+|+|+..+.-..++.+..+|+.+|++++|+++| +++ +|||.+++++.............+.+.||+. ....+-+
T Consensus 9 vG~g~t~~~~~~~~~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~---~~~~~~v- 84 (385)
T PRK06066 9 VGIGWYGFRPTTPEVSFREMMFEAASRAYKDAGNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGA---MRPTMTV- 84 (385)
T ss_pred EEeeecCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEecCcccCcccccchhHHHHcccC---CCCeEEE-
Confidence 577776654213478899999999999999999 997 7999998754211111111223466888862 2223333
Q ss_pred CcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 115 ~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
|.++..++..|...|++|.+ +.|||++.+.
T Consensus 85 --~~sg~~a~~~A~~aV~sG~~--d~vLv~g~~~ 114 (385)
T PRK06066 85 --AGDGLQGLAHAVMHINSGLA--NVVVVEAHSK 114 (385)
T ss_pred --eCcHHHHHHHHHHHHHcCCC--CEEEEEEEee
Confidence 88999999999999999988 9999999874
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-06 Score=85.17 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+-++.+|+..+.+.+|++++++|++||-||+|...+.-. .+.++-...-..|+ +..++++.|+..|.+|+.|+.+|
T Consensus 25 ~~~~~~~L~~~~~~~~l~r~~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~agl--p~~vp~~tvnr~C~Sgl~ai~~a 102 (417)
T PRK06025 25 AHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGY--DIKASGVTLDRFCGGGITSVNLA 102 (417)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCC--CCCCCeeeeccccchHHHHHHHH
Confidence 3678999999999999999999999999999998765433 35677777777788 67899999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.. +.+|+.+.|.++
T Consensus 103 a~~I~~G~~--~~~laGG~EsmS 123 (417)
T PRK06025 103 AAQIMSGME--DLVIAGGTEMMS 123 (417)
T ss_pred HHHHHcCCC--CEEEEeeeeccC
Confidence 999999966 999999999985
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=81.10 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHHHCCCC-cCCcc---EEEEEeecCCCC--------------------------cc-cHHHHHHHHh
Q 012353 52 DVISMSLTAVTNLLEKYKID-PKQIG---RLEVGSETVIDK--------------------------SK-SIKTFLMQIF 100 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~-~~~Id---~li~~T~s~~~~--------------------------~p-s~a~~l~~~L 100 (465)
....+++.|+.+||+++|++ ...++ .++++|..+... .+ ..+..|+..+
T Consensus 70 ~~~~~a~~Aa~eAl~dAgl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~ 149 (412)
T COG0304 70 RFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVF 149 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHh
Confidence 46789999999999999997 33343 123444332110 11 3566788888
Q ss_pred cccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-------cc------cC---C---CCC----
Q 012353 101 EKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-------VY------AE---G---PAR---- 157 (465)
Q Consensus 101 Gl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-------~y------~~---~---~~~---- 157 (465)
|+.| +.+.+..||+++..|+..|..+|+.|.. +.+|+.++|.. .| .. . ..+
T Consensus 150 g~~G----~~~~~~tACatg~~AIg~A~~~I~~G~a--d~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~ 223 (412)
T COG0304 150 GLKG----PNYTPVTACATGAHAIGDAVRLIRLGKA--DVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDK 223 (412)
T ss_pred CCCC----CcCChhhhHHhHHHHHHHHHHHHHcCCC--CEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCC
Confidence 8733 3456789999999999999999999977 99999999773 01 01 1 112
Q ss_pred ----cccccceeeeeecCCCC-----cccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 158 ----PTGGAAAVVMLVGPDAP-----VAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 158 ----~t~GdGA~A~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
...|.||+++||+.-.- ..+.-.+.|... .+.++.-.|. | +|.-- . .+++..++.
T Consensus 224 ~RdGfv~gEGag~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~-----p--~g~Ga----~----~am~~AL~~ 288 (412)
T COG0304 224 NRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPA-----P--DGEGA----I----RAMRAALAD 288 (412)
T ss_pred CCCCEEEecceeEEEecChhhHHhCCCceEEEEEEEEecccccccCCCC-----C--CCchH----H----HHHHHHHHH
Confidence 35799999999987541 112111333322 2334444443 2 34321 1 344444444
Q ss_pred hhhhhcCCCCCCCCceeeccCCchHHHHHHHHH
Q 012353 228 YEKLEGKQFSLSNADYFVFHSPYNKLVQKSFAR 260 (465)
Q Consensus 228 ~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~ 260 (465)
. |++++||||+..|-..++..++.-..
T Consensus 289 A------gl~~~~idYinaHgTsT~~nD~~E~~ 315 (412)
T COG0304 289 A------GLTPEDIDYINAHGTSTPANDKAESL 315 (412)
T ss_pred c------CCCHhHCCEEeCCCccCCCccHHHHH
Confidence 4 89999999999999888776665433
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=79.22 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=69.6
Q ss_pred hhhcCeEEecCCCCCCH-HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcc--cHHHHHHHHhcccCCCCceeEee
Q 012353 37 IGLGQECMAFCSEVEDV-ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSK--SIKTFLMQIFEKFGNTDIEGVDS 113 (465)
Q Consensus 37 ~Gig~r~~av~~~~Ed~-~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~p--s~a~~l~~~LGl~g~~~~~~~di 113 (465)
+|+|+..+....+..+. .+|+.+|++++|+++|++++|||.++.++. ..... .....+...+|+ .+.....-+
T Consensus 7 vG~g~t~~~~~~~~~~~~~el~~eA~~~Al~DAgl~~~dID~~~~~~~--~~~~~~~~~~~~~~~~~G~--~~~~~~~~v 82 (352)
T PRK07937 7 VGFAQAPHVRRTDGTTNGVEMLMPCFAELYAELGITKSDIGFWCSGSS--DYLAGRAFSFISAIDSIGA--VPPINESHV 82 (352)
T ss_pred EEeeccccccCCCCCCcHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcc--ccccccccchhhHHhhccC--CCCCceEEe
Confidence 57777665432222333 899999999999999999999998864432 21111 112334455675 233233333
Q ss_pred cCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Q 012353 114 TNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 114 ~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~ 148 (465)
. .+|..||..|...|++|.+ +.|||++.+.
T Consensus 83 ~---~~g~~a~~~A~~aI~sG~~--d~VLv~g~~k 112 (352)
T PRK07937 83 E---MDAAWALYEAWVKLLTGEV--DTALVYGFGK 112 (352)
T ss_pred c---CcHHHHHHHHHHHHhcCCC--CEEEEEEecc
Confidence 3 3577799999999999988 9999999874
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.9e-05 Score=73.65 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=84.9
Q ss_pred hhhhhcCeEEecCC--CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEe
Q 012353 35 YTIGLGQECMAFCS--EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 35 ~~~Gig~r~~av~~--~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~d 112 (465)
|..|+|..++--|. ++-|-.+|+.+|..++|+++++..++|+--+++-..++.....-| .-.+|+ +.++.+.
T Consensus 9 yvvgvgmtkf~kpg~~~~~dypd~a~ea~tkal~da~ikys~vqqa~vgyvfgdstcgqra---iyevgm---tgipi~n 82 (408)
T KOG1406|consen 9 YVVGVGMTKFEKPGRVADWDYPDFAKEAITKALQDAGIKYSEVQQAVVGYVFGDSTCGQRA---IYEVGM---TGIPIYN 82 (408)
T ss_pred EEEecceeeecCCCcccCCCCchHHHHHHHHHHHhcCCCHHHHHhhhheeeecCCccchHH---HHhccc---cCcceee
Confidence 45788888753322 345789999999999999999999999887776655544332222 226775 7789999
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
++|+|+.|..||.+|...|++|.. +.||..+-|.+
T Consensus 83 vnnncatgssalflakqiiesgn~--dcvlalgfekm 117 (408)
T KOG1406|consen 83 VNNNCATGSSALFLAKQIIESGNS--DCVLALGFEKM 117 (408)
T ss_pred ccCccccCchHHHHHHHHHhcCCc--ceEEeechhhh
Confidence 999999999999999999999976 99999998887
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=74.24 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHCCCCcCCcc----EEEEEeecCCCCcc-------------------cHHHHHHHHhcccCCCCceeEe
Q 012353 56 MSLTAVTNLLEKYKIDPKQIG----RLEVGSETVIDKSK-------------------SIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id----~li~~T~s~~~~~p-------------------s~a~~l~~~LGl~g~~~~~~~d 112 (465)
|..+.+.++|+++|+++..+. .|+.+....++... -+++.|...|++.| +.+.
T Consensus 94 llLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~G----Ps~~ 169 (1061)
T COG3321 94 LLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSG----PSVT 169 (1061)
T ss_pred HHHHHHHHHHHHcCCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCCC----CCcc
Confidence 889999999999999999888 46666655544322 26778899999843 5677
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-----c--ccC-------CC--------CCcccccceeeeeec
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-----V--YAE-------GP--------ARPTGGAAAVVMLVG 170 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-----~--y~~-------~~--------~~~t~GdGA~A~Ll~ 170 (465)
|..+|++.+.|+.+|+..|.+|.+ ..+|+-+.... . +.. +. +....|.|+++++|.
T Consensus 170 vdtaCSSsLvAvhlA~~sL~~Ge~--d~alaGgv~l~~~p~~~~~~~~~g~ls~~g~c~~fd~~adG~v~geG~g~vvLK 247 (1061)
T COG3321 170 VDTACSSSLVAVHLACQSLRLGEC--DLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEGAGVVVLK 247 (1061)
T ss_pred ccchhhHHHHHHHHHHHHHHcCCC--CEEEecceEeccCCcceeeeecccCcCCCCcceecccCCCCEEEeeeEEEEEEE
Confidence 899999999999999999999976 88888777664 1 111 11 123579999999998
Q ss_pred CCCCc-----ccccccccccccCc---ccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012353 171 PDAPV-----AFESKLRGSHMSHA---YDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242 (465)
Q Consensus 171 ~~~~~-----~~~~~~~~~~~~~~---~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did 242 (465)
+-... .|..-+.|+-..+. ..+..|+ + .+-...++..++. +++.+.+|+
T Consensus 248 rl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~---------~--------~aQ~~v~~~al~~------a~i~p~tv~ 304 (1061)
T COG3321 248 RLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPN---------L--------EAQADVIREALAD------AGIDPATVQ 304 (1061)
T ss_pred EhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCC---------H--------HHHHHHHHHHHHh------cCCCcccCc
Confidence 74321 11111222221110 0111111 1 1222233333333 379999999
Q ss_pred eeeccCCchHHHHHHH
Q 012353 243 YFVFHSPYNKLVQKSF 258 (465)
Q Consensus 243 ~~~~H~p~~km~~~~~ 258 (465)
|+=.|...+.+.+-+.
T Consensus 305 yvEaHgTGT~lGDpiE 320 (1061)
T COG3321 305 YVEAHGTGTPLGDPIE 320 (1061)
T ss_pred EEEecCCCCCCcCHHH
Confidence 9999999888776553
|
|
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=65.67 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCcC---Ccc----EEEEEeecCC---------------------CCcc-----cHHHHHHH
Q 012353 52 DVISMSLTAVTNLLEKYKIDPK---QIG----RLEVGSETVI---------------------DKSK-----SIKTFLMQ 98 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~---~Id----~li~~T~s~~---------------------~~~p-----s~a~~l~~ 98 (465)
+...||+.|+.++|+++++-+. +.| .|.+||.-+. +..| -.+.+|.-
T Consensus 93 ~~~~~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm 172 (440)
T KOG1394|consen 93 KFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSM 172 (440)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhh
Confidence 3578999999999999987654 223 2334443221 1122 23567888
Q ss_pred HhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c---------cCCC---CCc-
Q 012353 99 IFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------AEGP---ARP- 158 (465)
Q Consensus 99 ~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y---------~~~~---~~~- 158 (465)
++|+-| +...++.||+.+.+++-.|.++|+.|.. +..|.-++|.+. | .+.+ +||
T Consensus 173 ~~gl~G----pnhsvSTACATg~h~igda~n~Ir~Gda--DvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPf 246 (440)
T KOG1394|consen 173 KYGLRG----PNHSVSTACATGNHCIGDAFNFIRLGDA--DVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPF 246 (440)
T ss_pred hhcCcC----CchhhHhhhhhccchHHHHHHHHHhCcc--ceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCC
Confidence 888743 3345789999999999999999999955 777777778751 1 1111 233
Q ss_pred -------ccccceeeeeecCC-------CCcccccccccc-cccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHH
Q 012353 159 -------TGGAAAVVMLVGPD-------APVAFESKLRGS-HMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKC 223 (465)
Q Consensus 159 -------t~GdGA~A~Ll~~~-------~~~~~~~~~~~~-~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~ 223 (465)
..|.||+.+|++.= +++ ...+.|. .+.|.+...-|. .||.-. .. |+++
T Consensus 247 D~~RdGFVmGEGagvlvlEelEHA~~RgA~I--~AE~lGygls~Da~HiT~P~-------~dG~Ga----~~----am~r 309 (440)
T KOG1394|consen 247 DKKRDGFVMGEGAGVLVLEELEHAKKRGAPI--YAEVLGYGLSSDAYHITSPD-------PDGAGA----VL----AMER 309 (440)
T ss_pred ccCCCceeeccceeEEehHhHHHHHHcCCce--eHHhhcCcccccccccCCCC-------CCcchH----HH----HHHH
Confidence 46999999998752 222 1112332 233455444443 356432 12 3333
Q ss_pred HHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHH
Q 012353 224 LCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFA 259 (465)
Q Consensus 224 ~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~ 259 (465)
.++.. |+.++||||+-.|..++.+.+.+-.
T Consensus 310 aL~~A------gl~pe~i~YvNAHATST~~GD~aE~ 339 (440)
T KOG1394|consen 310 ALKDA------GLSPEDIDYVNAHATSTPLGDAAEA 339 (440)
T ss_pred HHHHc------CCChhhcCeeecccccCcCchHHHH
Confidence 33333 8999999999999988887776543
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=68.86 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHC--CCCcCCccEEEEEeecCCC-CcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKY--KIDPKQIGRLEVGSETVID-KSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~a--gi~~~~Id~li~~T~s~~~-~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
..++.....+..+++. ++++.+||.+++++..+.- .....+..+...+|+ ..+++++.++.+|.+|..|+..|..
T Consensus 27 ~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl--~~~~p~~~V~~~c~SG~~Av~~A~~ 104 (392)
T COG0183 27 AEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGL--PGSVPAVTVNRACASGLAAVRLAAQ 104 (392)
T ss_pred HHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCC--CCCCCceEEeccchhHHHHHHHHHH
Confidence 4444444444444432 5676678888988666552 355778889999998 4468999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEecccc
Q 012353 130 WVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~ 150 (465)
.|++|.. +.||+++.|..+
T Consensus 105 ~I~sG~~--dvvlagG~E~mS 123 (392)
T COG0183 105 AIASGEA--DVVLAGGVEKMS 123 (392)
T ss_pred HHHCCCC--CEEEEEeeeecc
Confidence 9999976 999999999874
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.012 Score=57.79 Aligned_cols=96 Identities=9% Similarity=0.085 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
.-.+.+|+..|.+.+|+++++++++++-+|++....-...-..+-..+---|| +.++.+..++.-|++|+-|+.+|..
T Consensus 27 sl~A~~Lgsvaikaalera~v~~~~v~eVi~GnVl~AnlGQapaRQaalgAGl--p~sv~~tTvNkvCaSgmKAv~laaQ 104 (396)
T KOG1390|consen 27 SLTATELGSVAIKAALERAVVPPSDVAEVIFGNVLSANLGQAPARQAALGAGL--PYSVPATTVNKVCASGMKAVILAAQ 104 (396)
T ss_pred cCchhhHHHHHHHHHHHhcCCCHHHhhhhhhccccccccCcchHHHHHhhcCC--CcceeeEeehhhhhhhHHHHHHHHH
Confidence 45688999999999999999999999999988765443332333333333455 5678889999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc
Q 012353 130 WVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~ 149 (465)
-|+.|.. +.|+..+.|.+
T Consensus 105 sI~~G~~--divVaGGmEsM 122 (396)
T KOG1390|consen 105 SIQTGHA--DIVVAGGMESM 122 (396)
T ss_pred HHhcCCc--cEEEecccchh
Confidence 9999955 77777777776
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.1 Score=49.54 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCC---------------Cccc-----HHHHHHHHhcccCCCCceeE
Q 012353 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVID---------------KSKS-----IKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~---------------~~ps-----~a~~l~~~LGl~g~~~~~~~ 111 (465)
...-|++.++..++.+. .++|.+|++|..++- .+|. +=..+...+.+.-.......
T Consensus 33 ~~~rla~~~a~~~~~~~----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~~~~t 108 (218)
T PF13723_consen 33 RLSRLALEAALECLAED----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNTGPNT 108 (218)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCCCceE
Confidence 38899999999998652 467899999877642 2341 11122333333111334556
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc---cccCCC-CCcccccceeeeeecCCCC
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA---VYAEGP-ARPTGGAAAVVMLVGPDAP 174 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~---~y~~~~-~~~t~GdGA~A~Ll~~~~~ 174 (465)
-+..+=.++-.||.-|..+++.| . +.||||+.|-. .|.... .+.....-|+|++|++...
T Consensus 109 al~a~~~sf~~aLleA~~~l~~~-~--~~VLlv~~De~~p~~y~~~~~~~~~~~~~A~al~L~~~~~ 172 (218)
T PF13723_consen 109 ALAAGEDSFEAALLEAAAQLAEG-A--EPVLLVCYDEPLPEPYQEFRPERDPPFPYALALVLSPGDS 172 (218)
T ss_pred EEecCcchHHHHHHHHHHHHHcC-C--CCEEEEEeCCCCChhhhhcccccCCCcCEEEEEEecCCCC
Confidence 66777789999999999999998 5 89999999986 233322 2344466789999998764
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.013 Score=55.94 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc-cC-CCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK-FG-NTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl-~g-~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+-+..+|.+.|++.+|+.+++.++.+|.+|++..-. +.+.+.||.+..|| .| +.+.+++.|+-=|.+|..++-++
T Consensus 25 g~~aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~a---SSsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsiVNg 101 (396)
T KOG1391|consen 25 GLSATDLGVVAAKAALKAANVGAEAVDHVIMGNVLA---SSSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSIVNG 101 (396)
T ss_pred CcchhhHHHHHHHHHHhhcCCChhhcceEEEeeeee---ccCCceEeeeccccccCCcCccCceeehhhhcccHHHHHhh
Confidence 456789999999999999999999999999875421 22334567777776 11 34677889999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVYA 152 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y~ 152 (465)
+.-|.-|.. +-||.-++|.++-.
T Consensus 102 aQ~I~vgea--~ivL~GGtEnMSq~ 124 (396)
T KOG1391|consen 102 AQEICVGEA--EIVLCGGTENMSQA 124 (396)
T ss_pred HHHhhcCcc--eEEEecCccccccC
Confidence 999999865 77777777777443
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.016 Score=56.00 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHH
Q 012353 51 EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNW 130 (465)
Q Consensus 51 Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~ 130 (465)
--+.+|+.+|...+|++..++.+.||.||+||.-..-....++-.-+-.-|. +..+++..+..+|-+.-.|+-+...+
T Consensus 64 lmphdlar~al~~ll~kt~lpke~~dyii~gtviqevktsniareaal~agf--sdktpahtvtmacissn~amttgmgl 141 (465)
T KOG1392|consen 64 LMPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVKTSNIAREAALLAGF--SDKTPAHTVTMACISSNVAMTTGMGL 141 (465)
T ss_pred hchhHHHHHHHHHHHHhccCCHHHhceeeehhhHHHHhcchHHHHHHHhcCC--CCCCccceeeeehhccchhhhcccee
Confidence 3468999999999999999999999999999976655443455444444565 56788888999999999999999999
Q ss_pred HHcCCC
Q 012353 131 VESSSW 136 (465)
Q Consensus 131 l~sg~~ 136 (465)
|++|.+
T Consensus 142 iatg~~ 147 (465)
T KOG1392|consen 142 IATGNA 147 (465)
T ss_pred EeeCCc
Confidence 999976
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.57 Score=53.69 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccE----EEEE---eecCCCC--cc------cHHHHHHHHhcccCCCCceeEe-----
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGR----LEVG---SETVIDK--SK------SIKTFLMQIFEKFGNTDIEGVD----- 112 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~---T~s~~~~--~p------s~a~~l~~~LGl~g~~~~~~~d----- 112 (465)
-+-|-.+|...++-++||+|.++.. +.++ ++|.... .| +....+-..+- |+=..+||
T Consensus 87 q~RlLLE~t~EAivDaGiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfa---NRiSytFDfqGPS 163 (2376)
T KOG1202|consen 87 QLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFA---NRISYTFDFQGPS 163 (2376)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhh---cceeEEEeccCCc
Confidence 5789999999999999999987652 2222 2222111 11 11112222332 22223444
Q ss_pred --ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-------cc-------cCCCCC--------cccccceeeee
Q 012353 113 --STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-------VY-------AEGPAR--------PTGGAAAVVML 168 (465)
Q Consensus 113 --i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-------~y-------~~~~~~--------~t~GdGA~A~L 168 (465)
+..+|++.+.||+.|.+-+++|++ ..+||-+.... .| .+++.+ .--.||.+|+|
T Consensus 164 ~s~DtacsSsl~al~~a~~~~r~gqc--d~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~avl 241 (2376)
T KOG1202|consen 164 FSVDTACSSSLMALQNAFQDIRSGQC--DAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVAVL 241 (2376)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhccCC--chhhhcccceEeccchhhHHHHhcCcCCCCcccchhccCCceeecCceEEEE
Confidence 446999999999999999999988 88988887764 11 122211 12478999999
Q ss_pred ecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeecc
Q 012353 169 VGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFH 247 (465)
Q Consensus 169 l~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H 247 (465)
|.+.... .+-..+.... .+ -|-++.. +-.|| +|+... .-+++.|.+ .|+.++++-|+=.|
T Consensus 242 lqrk~~ArRvYAtilnar-tN-TDGfKEq-GvTfP--~G~~Q~----qLi~e~Yse----------~Gl~P~sv~YvEAH 302 (2376)
T KOG1202|consen 242 LQRKSLARRVYATILNAR-TN-TDGFKEQ-GVTFP--SGDMQE----QLIRETYSE----------AGLNPESVVYVEAH 302 (2376)
T ss_pred EehhHHHHHHHHHhhccc-cC-CCchhhc-CccCC--CcHHHH----HHHHHHHHh----------cCCCcccEEEEEec
Confidence 9887431 1100010000 11 2334443 45566 465431 234444433 38999999999999
Q ss_pred CCchHHHH
Q 012353 248 SPYNKLVQ 255 (465)
Q Consensus 248 ~p~~km~~ 255 (465)
..++|..+
T Consensus 303 GtGTkVGD 310 (2376)
T KOG1202|consen 303 GTGTKVGD 310 (2376)
T ss_pred cCCCCCCC
Confidence 98887654
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.11 Score=41.80 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=40.9
Q ss_pred HHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec----CcChhHHHHHHHHHHHHHcCC-CCCC
Q 012353 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST----NACYGGTAALFNCVNWVESSS-WDGR 139 (465)
Q Consensus 65 L~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~----~aC~gg~~AL~~A~~~l~sg~-~~~~ 139 (465)
|+++|++++|||.+++...+ +.....+.+.||+ ++.....++. .+|++-..+| ...++.+. .||+
T Consensus 1 L~~~g~~~~did~~i~hq~~-----~~~~~~~~~~lgi--~~~~~~~~~~~~Gn~~sa~~~~~L---~~~~~~g~~~~Gd 70 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQAS-----KKILDSIAKRLGI--PPERFPDNLAEYGNTGSASIPINL---ADALEEGRIKPGD 70 (90)
T ss_dssp HHHTT--GGGESEEEE-SSS-----HHHHHHHHHHHTS---GGGBE-THHHH-B-GGGHHHHHH---HHHHHTTSSCTTE
T ss_pred CccccCCHHHCCEEEeCCCC-----HHHHHHHHHHcCC--cHHHHHHHHhccCcchhhhHHHHH---HHHHHcCCCCCCC
Confidence 68999999999999985533 3344458889997 4332222332 2333333344 34455442 2778
Q ss_pred EEEEEEe
Q 012353 140 YGLVVCT 146 (465)
Q Consensus 140 ~aLVVas 146 (465)
++|+++.
T Consensus 71 ~vl~~~~ 77 (90)
T PF08541_consen 71 RVLLVGF 77 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999884
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.14 Score=53.39 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHH
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLE 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~ 299 (465)
+.++++++. |++++|||++-+|++|..+.....+.+ +++.+++..+
T Consensus 320 Ai~~aL~~A------Gl~~~DID~~ei~eaFa~~~l~~~~~l------------------------g~~~~~vN~~---- 365 (417)
T PRK06025 320 AAKKVLAKA------GLTKDDIDLWEINEAFAVVAEKFIRDL------------------------DLDRDKVNVN---- 365 (417)
T ss_pred HHHHHHHHc------CCCHHHCcEEEEchHHHHHHHHHHHHc------------------------CCChhhcccc----
Confidence 445555554 799999999999999998888777776 4443322111
Q ss_pred HHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEec
Q 012353 300 KVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYG 358 (465)
Q Consensus 300 k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syG 358 (465)
--.+.+.+-+|+++...+...+..+.++ + .+.| .+.+++.|
T Consensus 366 ---------------GG~ia~GHp~GaTGa~~v~~ll~qL~~~-g-~~~G-l~~~c~~G 406 (417)
T PRK06025 366 ---------------GGAIALGHPIGATGSILIGTVLDELERR-G-LKRG-LVTMCAAG 406 (417)
T ss_pred ---------------CCHHhcCCchhHHHHHHHHHHHHHHHHh-C-CCeE-EEEEEeec
Confidence 0112234678888988888888888765 3 3445 34444443
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.2 Score=49.22 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHh-cccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIF-EKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~L-Gl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
+...-+|-..+.+..+++.+++|+.|+-|+++|...+-.. ...+.++..+ |+ +..++..-++--|++|+.|+...+
T Consensus 58 dt~pDeLl~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~g-a~e~R~a~~~ag~--P~tvpv~tvNRqCsSGLqaVadiA 134 (435)
T KOG1389|consen 58 DTRPDELLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSG-ASECRMAAFYAGF--PETVPVRTVNRQCSSGLQAVADIA 134 (435)
T ss_pred cCChHHHHHHHHHHHHhhcCCCHHHhcceeeeeccCCCcc-hHHHHHHHHHcCC--CcccchhhhhhhhhhHHHHHHHHH
Confidence 3445688888899999999999999999999998876533 5666666655 44 445666667789999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~ 149 (465)
.-|++|.+ +-.|-.+.|.+
T Consensus 135 ~~Ir~G~y--dIGla~GvESM 153 (435)
T KOG1389|consen 135 AKIRAGFY--DIGLAAGVESM 153 (435)
T ss_pred HHHhcCce--eeecccchhhh
Confidence 99999988 77777777766
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.5 Score=48.17 Aligned_cols=90 Identities=9% Similarity=-0.050 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEE-EeecCCCCcccHHHHHHHHhcccCCCCceeEeec---CcChhHHHHHHH--HHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEV-GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST---NACYGGTAALFN--CVNW 130 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~-~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~---~aC~gg~~AL~~--A~~~ 130 (465)
..+|.+++|+++|++|++||.|+. +|.+.. .....+..+.+.+|.. ....+....+ .-|-+...++.+ +...
T Consensus 236 l~~ai~~AL~~agl~~~dId~v~ah~~gt~~-~d~~e~~A~~~~f~~~-~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~ 313 (348)
T PRK06147 236 LTQAIRAALAEAGCGLEDMDYRIADLNGEQY-RFKEAALAEMRLFRVR-KEFFDLWHPAECIGEIGAAIGPALLGVALAA 313 (348)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEcCCCCCcc-chHHHHHHHHHHhhhc-cCCCceecchHhhcchHHHHHHHHHHHHHHH
Confidence 457899999999999999999884 344432 2334455567777631 1122222222 234444444444 4455
Q ss_pred HHcCCCCCCEEEEEEecc
Q 012353 131 VESSSWDGRYGLVVCTDS 148 (465)
Q Consensus 131 l~sg~~~~~~aLVVasD~ 148 (465)
++.|..|+.++||.+++-
T Consensus 314 ~~~g~~~g~~~L~~s~~d 331 (348)
T PRK06147 314 SRKGYGPGPNVLCHLSDD 331 (348)
T ss_pred HHcCcCCCCcEEEEecCC
Confidence 667777889999999764
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.68 Score=47.13 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCC-Cce-eE---eecC-cChhHHHHHH
Q 012353 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIE-GV---DSTN-ACYGGTAALF 125 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~-~~~-~~---di~~-aC~gg~~AL~ 125 (465)
.....+..+++++|+++|++++|||.+++...++ ..-..+.+.||+ .+ .+. .+ +++| ++++-..+|.
T Consensus 205 ~~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~~~-----~~~~~~~~~lgl--~~ek~~~~~~~~~~GNt~sAsipl~L~ 277 (345)
T TIGR00748 205 AYFHHVVTAAKGLMEKLGLTPEDFDYAVFHQPNG-----KFYLVAARMLGF--PKEQVKPGLLTPRIGNTYSGATPVGLS 277 (345)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHcCEEEeCCCCh-----HHHHHHHHHcCC--CHHHeeccccccccCchhhhHHHHHHH
Confidence 4677788999999999999999999999754332 233457888997 32 222 11 4443 6666666776
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccccccCCCCCcccccce--eeeeecC
Q 012353 126 NCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAA--VVMLVGP 171 (465)
Q Consensus 126 ~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA--~A~Ll~~ 171 (465)
.+...++ +|+++|+++ ||.|. .++++.-
T Consensus 278 ~~~~~~~----~Gd~vll~~--------------~G~G~s~~~~~~~~ 307 (345)
T TIGR00748 278 AVLDIAE----PGDRILAVS--------------YGSGAGSDAFSIVV 307 (345)
T ss_pred HHHHhcC----CCCEEEEEE--------------ecCCcceeEEEEEE
Confidence 6654322 678898887 67666 5666543
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.81 Score=47.47 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=22.9
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
|++++|||++-.|-.|.-......+.|
T Consensus 305 gl~~~dId~~e~~d~f~~~~~~~~e~l 331 (393)
T PRK05656 305 GWSLAELDLIEANEAFAAQSLAVGKEL 331 (393)
T ss_pred CCCHHHCCEEEecCccHHHHHHHHHHh
Confidence 799999999999999887776666666
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=1.5 Score=45.33 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhccc-C--CCC--ceeEeecCcChhHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKF-G--NTD--IEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~-g--~~~--~~~~di~~aC~gg~~AL~~A~ 128 (465)
..-...|++++|+++|++++|||.+.+. |..+...-...+.||+. . |++ ..++-.-.+|+|....+..+.
T Consensus 284 ~~~~~~a~~~al~~agl~~~did~~ei~-----d~F~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~ 358 (387)
T PRK07850 284 LDGPVQATAKVLEKAGMKIGDIDLVEIN-----EAFASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALH 358 (387)
T ss_pred cchHHHHHHHHHHHcCCCHHHcCeeeec-----ccchHHHHHHHHHcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHH
Confidence 3445789999999999999999999973 22222233344677741 0 111 111111134444444444444
Q ss_pred HHHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 129 NWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
.+ +.. .+++.|+..+ ..|..+.||||+.
T Consensus 359 qL-~~~--~~~~g~~~~c------------~~gg~g~a~~~e~ 386 (387)
T PRK07850 359 EL-ERT--DKSTALITMC------------AGGALSTGTIIER 386 (387)
T ss_pred HH-Hhc--CCCeEEEEEc------------cccCceeEEEEEe
Confidence 44 433 3477766532 2456667777764
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.76 Score=47.62 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=64.1
Q ss_pred echHHHHHhcCCChh-hhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHH
Q 012353 19 VQQEALEAHDGASKG-KYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLM 97 (465)
Q Consensus 19 v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~ 97 (465)
|..++.++..+..|- ++ .|.++.. . +.++.....+.|++++|+++|++++|||.+.+. |......-.-.
T Consensus 253 l~See~A~~l~~~pv~~I-~g~~~~~--~--~~~~~~~~~~~A~~~al~~Agl~~~DiDv~Ei~-----daFa~~~l~~l 322 (388)
T PRK06366 253 MASEKAINEYGLKPIARI-TGYESAS--L--DPLDFVEAPIPATRKLLEKQNKSIDYYDLVEHN-----EAFSIASIIVR 322 (388)
T ss_pred EecHHHHHHcCCCcCEEE-EEEEEEe--c--CHHHhcccHHHHHHHHHHHcCCCHHHcceeecc-----chhHHHHHHHH
Confidence 444555555554443 44 2444332 1 123333445789999999999999999999862 22223334455
Q ss_pred HHhcccC---CCCceeEeec--CcChhHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 012353 98 QIFEKFG---NTDIEGVDST--NACYGGTAALFNCVNWVESSSWDGRYGLVVC 145 (465)
Q Consensus 98 ~~LGl~g---~~~~~~~di~--~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVa 145 (465)
+.||+-+ |++-=.+-.+ -+|+|....+.++..+-..+ +++.|+..
T Consensus 323 e~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~~~---~~~g~~~~ 372 (388)
T PRK06366 323 DQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKTRH---MKTGLATL 372 (388)
T ss_pred HHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHHHhcC---CCeEEEEE
Confidence 6677521 1111122223 37777777777777765543 36666543
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.4 Score=45.53 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
|++++|||++-.|-+|.-+.....+.|
T Consensus 299 gi~~~did~~e~~d~f~~~~~~~~e~l 325 (386)
T cd00751 299 GLTLDDIDLIEINEAFAAQALACLKEL 325 (386)
T ss_pred CCCHHHcCEEEeechhHHHHHHHHHHh
Confidence 789999999999999987666655555
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.4 Score=45.78 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecC---------cChhHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN---------ACYGGTAALFNC 127 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~---------aC~gg~~AL~~A 127 (465)
...|++++|+++|++|+|||.+.+ .|......-...+.||+. ..-..+..+. +++|...-+..+
T Consensus 298 ~~~A~~~al~~AGl~~~DID~iei-----~dafa~~~l~~~e~lg~~--~~~~pvN~~GG~la~GHp~gasG~~~v~e~~ 370 (400)
T PRK13359 298 PAPATQKLLARLGMTLDQFDVIEL-----NEAFASQGLAVLRELGLA--DDDARVNPNGGAIALGHPLGASGARLVTTAL 370 (400)
T ss_pred HHHHHHHHHHHhCCCHHHcCcCcc-----CcHhHHHHHHHHHHcCCC--CCCCCEECCCchhhcCCchhHHHHHHHHHHH
Confidence 368999999999999999999983 222223334456778762 1112233322 333444334444
Q ss_pred HHHHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
..+ +.. ++++.|+..+ ..|..+.||||++
T Consensus 371 ~qL-~~~--~~~~g~~~~c------------~~gG~g~a~~ie~ 399 (400)
T PRK13359 371 YQL-ERT--GGRFALCTMC------------IGVGQGIAIAIER 399 (400)
T ss_pred HHH-hhc--CCCeEEEEEc------------ccCCceeEEEEEe
Confidence 443 333 3567666442 2455667777764
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.1 Score=46.53 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++|+|||.+.+ .|..+...-...+.||+
T Consensus 298 ~~~a~~~al~~Agl~~~DID~~ei-----~D~f~~~~l~~~e~lG~ 338 (400)
T TIGR02430 298 PVPATQKLLARAGLSIDQFDVIEL-----NEAFAAQALAVLRELGL 338 (400)
T ss_pred HHHHHHHHHHHhCCCHHHCCCccc-----CcHHHHHHHHHHHHcCC
Confidence 358899999999999999999983 23233334456677886
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.1 Score=46.60 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++|+|||.+.+. |......-...+.||+
T Consensus 300 ~~~a~~~al~~Agl~~~Did~~ei~-----d~f~~~~l~~~e~lg~ 340 (404)
T PRK06205 300 PVPATEKALARAGLTLDDIDLIELN-----EAFAAQVLAVLKEWGF 340 (404)
T ss_pred HHHHHHHHHHHcCCCHHHCCEeeec-----cHHHHHHHHHHHHhCc
Confidence 4689999999999999999999852 2222223334566775
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=89.56 E-value=2 Score=36.97 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC---CCCceeEeec--CcChhHHHHHHHHHHH
Q 012353 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG---NTDIEGVDST--NACYGGTAALFNCVNW 130 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g---~~~~~~~di~--~aC~gg~~AL~~A~~~ 130 (465)
=.+.|++++|+++|++++|||.+.+.- ..-...-...+.||+.. |++-=.+-+. .+|+|...-+..+..+
T Consensus 23 ~p~~A~~~al~~ag~~~~did~~Ei~E-----aFA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L 97 (123)
T PF02803_consen 23 GPVPAARKALERAGLTPDDIDVIEINE-----AFAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQL 97 (123)
T ss_dssp THHHHHHHHHHHHT--GGGESEEEE-------SBHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCccccchhhccc-----hhhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHH
Confidence 345799999999999999999998732 12233445677787610 1111122222 4777777777777776
Q ss_pred HHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 131 VESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 131 l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
-..+ +++.|+-.+ ..|..+.|+||++
T Consensus 98 ~~~~---~~~gla~~~------------~ggG~g~a~ller 123 (123)
T PF02803_consen 98 RRRG---GRYGLAAIC------------AGGGQGSAVLLER 123 (123)
T ss_dssp HHHT---TSEEEEEEE------------ETTTEEEEEEEEE
T ss_pred HHhc---hhhhhHHhc------------ccceeeEEEEEEC
Confidence 5544 366665442 2456667777753
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=89.34 E-value=1.9 Score=45.70 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
|++++|||++=+|-+|.-+.-..++.|
T Consensus 345 gl~~~DID~~Ei~daFa~~~l~~~e~l 371 (452)
T PLN02287 345 GLELDDIDLFEINEAFASQFVYCCKKL 371 (452)
T ss_pred CCCHHHCCEEEecchHHHHHHHHHHHc
Confidence 799999999999999887766666666
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=3.2 Score=43.08 Aligned_cols=27 Identities=4% Similarity=0.180 Sum_probs=24.3
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
|++++|||.+=+|-+|.-......+.|
T Consensus 302 gl~~~Did~~Ei~d~Fa~~~l~~~e~l 328 (390)
T PRK06504 302 GMKIDDIDLYEVNEAFASVPLAWLKAT 328 (390)
T ss_pred CCCHHHCCEEEecccchHHHHHHHHHh
Confidence 799999999999999998888777777
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=88.42 E-value=2.2 Score=44.41 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++++|||.+.+ .|......-...+.||+
T Consensus 299 ~~~a~~~al~~Agl~~~DId~~ei-----~D~f~~~~l~~~e~lg~ 339 (401)
T PRK09050 299 PAPATRKLLARLGLTIDQFDVIEL-----NEAFAAQGLAVLRQLGL 339 (401)
T ss_pred HHHHHHHHHHHcCCCHHHCCcccc-----CcHhHHHHHHHHHHcCC
Confidence 357999999999999999999984 22222333445677886
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=4.2 Score=41.97 Aligned_cols=38 Identities=5% Similarity=0.038 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhh
Q 012353 219 TCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLL 262 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~ 262 (465)
.+.+..+++. |++++|||++-+|-+|+.+...+.+.|.
T Consensus 261 ~a~~~al~~A------gi~~~DiD~~ei~d~ft~~~l~~le~lG 298 (385)
T PRK12578 261 LAARQAYNMA------KVTPNDIEVATVHDAFTIAEIMGYEDLG 298 (385)
T ss_pred HHHHHHHHHc------CCCHHHCCEEEecCcChHHHHHHHHHcC
Confidence 3444444444 7899999999999999999888888884
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=2.8 Score=43.51 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++++|||.+.+. +......-...+.||+
T Consensus 294 ~~~a~~~al~~agi~~~did~~ei~-----d~f~~~~~~~~e~lg~ 334 (394)
T PRK09051 294 PVPATQKALERAGLTVADLDVIEAN-----EAFAAQACAVTRELGL 334 (394)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec-----CccHHHHHHHHHHhCC
Confidence 3688999999999999999999872 2222334455677886
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.51 E-value=4.2 Score=42.70 Aligned_cols=27 Identities=7% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
|++++|||.+-.|-+|.-+.-..++.|
T Consensus 323 Gl~~~DiD~~Ei~d~Fa~~~l~~~e~l 349 (428)
T PRK08963 323 GLTLADLTLIDMHEAFAAQTLANLQMF 349 (428)
T ss_pred CCCHHHCCEEEEccccHHHHHHHHHHh
Confidence 799999999999999998777766665
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=5.5 Score=41.22 Aligned_cols=38 Identities=5% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhh
Q 012353 219 TCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLL 262 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~ 262 (465)
.+.+..+++. |++++|||.+-.|-+|+-+..-..+.|.
T Consensus 264 ~a~~~a~~~a------gl~~~did~~e~~d~f~~~~~~~~e~lg 301 (389)
T PRK07516 264 RAWQRALAQA------GVTLDDLSFVETHDCFTIAELIEYEAMG 301 (389)
T ss_pred HHHHHHHHHc------CCCHHHCCEEEEecCCCHHHHHHHHHcC
Confidence 3444454544 7899999999999999998888888774
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=85.84 E-value=3.9 Score=42.14 Aligned_cols=79 Identities=14% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--C--cChhHHHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--N--ACYGGTAALFNCVNWVE 132 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~--aC~gg~~AL~~A~~~l~ 132 (465)
...+++++|+++|++++|||.+++..-+ +.+-..+++.||+ ..+-....+. . ++++-..+|. .+++
T Consensus 282 ~~~~i~~~L~~~gl~~~dId~~v~Hq~n-----~~~~~~~~~~Lgl--~~ek~~~~l~~~GNt~sAsi~~~L~---~~~~ 351 (379)
T PLN02326 282 VPQVIESALQKAGLTAESIDWLLLHQAN-----QRIIDAVAQRLGI--PPEKVISNLANYGNTSAASIPLALD---EAVR 351 (379)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHcCC--CHHHeeecHhhcCcHHHHHHHHHHH---HHHH
Confidence 4456788899999999999998874432 2333458999998 4332222332 2 3333333333 3345
Q ss_pred cCC-CCCCEEEEEE
Q 012353 133 SSS-WDGRYGLVVC 145 (465)
Q Consensus 133 sg~-~~~~~aLVVa 145 (465)
.+. .+|+++|+++
T Consensus 352 ~g~~~~Gd~vll~~ 365 (379)
T PLN02326 352 SGKVKKGDVIATAG 365 (379)
T ss_pred cCCCCCCCEEEEEE
Confidence 543 2778898887
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=85.58 E-value=3.3 Score=41.61 Aligned_cols=81 Identities=6% Similarity=-0.036 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--CcChhHHHHHHHHHHHHHcC
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--NACYGGTAALFNCVNWVESS 134 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~aC~gg~~AL~~A~~~l~sg 134 (465)
...+.+++|+++|++++|||.+++...+. ..-..+++.||+ +.......+. ..|++...-+.++ .+++++
T Consensus 232 ~~~~i~~~L~~~gl~~~did~~~~H~~~~-----~~~~~i~~~l~l--~~e~~~~~~~~~Gn~~sas~~~~L~-~~~~~g 303 (329)
T PRK07204 232 LMKFIDKLLMDAGYTLADIDLIVPHQASG-----PAMRLIRKKLGV--DEERFVTIFEDHGNMIAASIPVALF-EAIKQK 303 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeCCCCH-----HHHHHHHHHcCC--CHHHhhhhHhhhCcHHHHHHHHHHH-HHHHcC
Confidence 44778899999999999999998744332 234578999997 3322221221 2333333323332 345555
Q ss_pred C-CCCCEEEEEE
Q 012353 135 S-WDGRYGLVVC 145 (465)
Q Consensus 135 ~-~~~~~aLVVa 145 (465)
. .+|+++|+++
T Consensus 304 ~~~~Gd~vll~~ 315 (329)
T PRK07204 304 KVQRGNKILLLG 315 (329)
T ss_pred CCCCCCEEEEEE
Confidence 3 3778888887
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=84.98 E-value=3.4 Score=41.26 Aligned_cols=79 Identities=16% Similarity=0.014 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee---cC-cChhHHHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS---TN-ACYGGTAALFNCVNWVE 132 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di---~~-aC~gg~~AL~~A~~~l~ 132 (465)
..++.+++|+++|++++|||.+++..- .+..-..+++.||+ +..-....+ +| +|++...+| ..+++
T Consensus 227 ~~~~i~~~L~~~g~~~~did~~~~h~~-----~~~~~~~~~~~lg~--~~~~~~~~~~~~Gn~~sas~~~~L---~~~~~ 296 (325)
T PRK12879 227 MPKGARQVLEKAGLTKDDIDWVIPHQA-----NLRIIESLCEKLGI--PMEKTLVSVEYYGNTSAATIPLAL---DLALE 296 (325)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHcCC--CHHHhhhhHhhhCchHHHHHHHHH---HHHHH
Confidence 346788999999999999999997532 33445678999997 322111122 22 222333333 34456
Q ss_pred cCC-CCCCEEEEEE
Q 012353 133 SSS-WDGRYGLVVC 145 (465)
Q Consensus 133 sg~-~~~~~aLVVa 145 (465)
.+. .+|+++|+++
T Consensus 297 ~g~~~~Gd~vll~~ 310 (325)
T PRK12879 297 QGKIKPGDTLLLYG 310 (325)
T ss_pred cCCCCCCCEEEEEE
Confidence 653 2778998887
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=84.77 E-value=3.5 Score=41.45 Aligned_cols=82 Identities=6% Similarity=0.010 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHHcCC
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVESSS 135 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~sg~ 135 (465)
...+.+++|+++|++++|||.+++..-+ +..-..+.+.||+ +..-....+. .|-.+...-+..-..+++.+.
T Consensus 228 ~~~~i~~~L~~~g~~~~did~~~~hq~~-----~~~~~~~~~~lgl--~~~k~~~~l~~~Gn~~sasi~~~L~~~~~~g~ 300 (326)
T CHL00203 228 VPAVIIKCLNALNISIDEVDWFILHQAN-----KRILEAIANRLSV--PNSKMITNLEKYGNTSAASIPLALDEAIQNNK 300 (326)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhCC--CHHHhhhHHHhhCcHHHHHHHHHHHHHHHhCC
Confidence 4456889999999999999999874433 3344568999998 3222122232 222222222222223345543
Q ss_pred -CCCCEEEEEE
Q 012353 136 -WDGRYGLVVC 145 (465)
Q Consensus 136 -~~~~~aLVVa 145 (465)
.+|+++|+++
T Consensus 301 ~~~Gd~vll~~ 311 (326)
T CHL00203 301 IQPGQIIVLSG 311 (326)
T ss_pred CCCCCEEEEEE
Confidence 3788898887
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=84.52 E-value=1.2 Score=37.74 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCCcCCccEEEE-EeecCCCCcccHHHHHHHHhcccC-CCCceeEeec-----CcChhHHHHHHHHHHH
Q 012353 58 LTAVTNLLEKYKIDPKQIGRLEV-GSETVIDKSKSIKTFLMQIFEKFG-NTDIEGVDST-----NACYGGTAALFNCVNW 130 (465)
Q Consensus 58 ~~Aa~~aL~~agi~~~~Id~li~-~T~s~~~~~ps~a~~l~~~LGl~g-~~~~~~~di~-----~aC~gg~~AL~~A~~~ 130 (465)
.++.+++|++++++|++||.|.. +|.++. ..+.-+..+.+.|+-.. ...+..-.++ ....+|+..|..+.-.
T Consensus 28 ~~~i~~al~~agi~~~~I~~i~~hg~Gt~~-~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~~~l~ 106 (119)
T PF02801_consen 28 ARAIRRALADAGISPEDIDYIEAHGTGTPL-GDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAKALLA 106 (119)
T ss_dssp HHHHHHHHHHHTS-GGGEEEEE----SSHH-HHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccceeeeeecccccc-chhhhhhhhhhhhcccccccccceeccccccccccccchHHHHHHHHHH
Confidence 67799999999999999999984 444432 23456667888887411 0124433333 2456667777777777
Q ss_pred HHcCC
Q 012353 131 VESSS 135 (465)
Q Consensus 131 l~sg~ 135 (465)
++.+.
T Consensus 107 l~~~~ 111 (119)
T PF02801_consen 107 LEHGT 111 (119)
T ss_dssp HHHTE
T ss_pred HhcCC
Confidence 76653
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=6.1 Score=40.53 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCC-c------eeEeecCcChhHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD-I------EGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~-~------~~~di~~aC~gg~~AL~~A 127 (465)
.-...|++++|+++|++++|||.+.+. +......-...+.||+ ... + .++-.-.|+.|........
T Consensus 258 ~~~~~a~~~al~~Agl~~~Did~~ei~-----eafa~~~~~~~e~lgl--~~~~vn~~GG~la~Ghp~GatG~~~~~~~~ 330 (361)
T PRK06690 258 TGPIFAVNKLLNEMNMKVEDIDYFEIN-----EAFASKVVACAKELQI--PYEKLNVNGGAIALGHPYGASGAMLVTRLF 330 (361)
T ss_pred hHHHHHHHHHHHHcCCCHHHcCEeeec-----chhHHHHHHHHHhcCC--CchhcccCCcHHhccCchhhhHHHHHHHHH
Confidence 345679999999999999999999762 2222334445677776 211 0 0111123666666666666
Q ss_pred HHHHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
..+-+.+ +++.|+..+ ..|-.++|+||++
T Consensus 331 ~ql~~~~---~~~g~~~~c------------~~gG~g~a~~~e~ 359 (361)
T PRK06690 331 YQAKRED---MKYGIATLG------------IGGGIGLALLFEK 359 (361)
T ss_pred HHHHHhC---CCEEEEEEc------------ccCcceeEEEEEe
Confidence 5554433 366655431 2344567777764
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=84.19 E-value=6.6 Score=40.42 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHh-----cccCCCCce-eE-eec-CcChhHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIF-----EKFGNTDIE-GV-DST-NACYGGTAALF 125 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~L-----Gl~g~~~~~-~~-di~-~aC~gg~~AL~ 125 (465)
......+.+++|+++|+.++|||.++...-+ +..--.+.++| |+. ..++. .+ +++ .+|++...+|.
T Consensus 271 ~~~~~~~i~~~L~~~gl~~~DId~~v~Hq~n-----~~~~~~v~~~l~~~~~gl~-~~k~~~~~~~~GNt~sAsipi~L~ 344 (378)
T PRK06816 271 VVYTIKPLLELVDKRNLDPDDIDYFLPHYSS-----EYFREKIVELLAKAGFMIP-EEKWFTNLATVGNTGSASIYIMLD 344 (378)
T ss_pred HHHHHHHHHHHHHHcCCChhhCCEEeeCccc-----HHHHHHHHHHHHhccCCCC-hhheEEeccccccccchHHHHHHH
Confidence 3455788899999999999999999864332 23334566666 651 12222 22 222 35555555665
Q ss_pred HHHHHHHcCC-CCCCEEEEEEeccc
Q 012353 126 NCVNWVESSS-WDGRYGLVVCTDSA 149 (465)
Q Consensus 126 ~A~~~l~sg~-~~~~~aLVVasD~~ 149 (465)
.+ ++.|. .+|+++++++.+..
T Consensus 345 ~a---~~~g~~~~Gd~vl~~~~~s~ 366 (378)
T PRK06816 345 EL---LNSGRLKPGQKILCFVPESG 366 (378)
T ss_pred HH---HHcCCCCCCCEEEEEEeccc
Confidence 44 44443 37889999887654
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=83.56 E-value=5 Score=43.01 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhh
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLL 262 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~ 262 (465)
+.+..+++. |++++|||.+=+|..|+-+....++.|.
T Consensus 297 aa~~a~~~A------Gi~~~Did~~elydcF~~~~~~~~E~LG 333 (498)
T PRK08257 297 AGRRALALA------GLGIDDIDAFDLYSCFPSAVQVAARELG 333 (498)
T ss_pred HHHHHHHHh------CCCHHHCCEEEeccCCHHHHHHHHHHcC
Confidence 444444444 7999999999999999999988888883
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=82.87 E-value=4.5 Score=40.49 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--CcChhHHHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--NACYGGTAALFNCVNWV 131 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~aC~gg~~AL~~A~~~l 131 (465)
.....++.+++|+++|++++|||.+++..-+ +..-..+.+.||+ +..-....+. ..|++...-+.+ ..++
T Consensus 226 ~~~~~~~~~~~L~~~gl~~~did~~~~h~~~-----~~~~~~~~~~l~l--~~~k~~~~l~~~Gn~~sas~~~~L-~~~~ 297 (326)
T PRK05963 226 VRMMSGASQNVLASAAMTPQDIDRFFPHQAN-----ARIVDKVCETIGI--PRAKAASTLETYGNSSAATIPLSL-SLAN 297 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEeCCCC-----HHHHHHHHHHcCC--CHHHhhhhHHhhCcHHHHHHHHHH-HHHH
Confidence 4445667889999999999999998873322 3445567889997 3322111222 234333333322 2334
Q ss_pred HcCC-CCCCEEEEEE
Q 012353 132 ESSS-WDGRYGLVVC 145 (465)
Q Consensus 132 ~sg~-~~~~~aLVVa 145 (465)
+.+. .+|+++|+++
T Consensus 298 ~~~~~~~Gd~vll~~ 312 (326)
T PRK05963 298 LEQPLREGERLLFAA 312 (326)
T ss_pred HhCCCCCCCEEEEEE
Confidence 4442 3778999888
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=82.74 E-value=3.7 Score=34.80 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHH
Q 012353 218 DTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFAR 260 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~ 260 (465)
.+++++.+++. +++++|||++..|....+..+..-..
T Consensus 28 ~~~i~~al~~a------gi~~~~I~~i~~hg~Gt~~~D~~E~~ 64 (119)
T PF02801_consen 28 ARAIRRALADA------GISPEDIDYIEAHGTGTPLGDAAEAE 64 (119)
T ss_dssp HHHHHHHHHHH------TS-GGGEEEEE----SSHHHHHHHHH
T ss_pred HHHHHHHHhhh------ccccccceeeeeeccccccchhhhhh
Confidence 33444444544 78999999999999999987765443
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=82.52 E-value=5.8 Score=39.90 Aligned_cols=83 Identities=6% Similarity=-0.024 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee--cCcChhHHHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS--TNACYGGTAALFNCVNWVE 132 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di--~~aC~gg~~AL~~A~~~l~ 132 (465)
....++.+++|+++|++++|||.+++... .+..-..+.+.||+ +..-....+ -..|++...-+.++ .+++
T Consensus 239 ~~~~~~~~~~L~~~g~~~~did~~i~H~~-----~~~~~~~~~~~lgl--~~~k~~~~~~~~GN~~sas~~~~L~-~~~~ 310 (338)
T PRK09258 239 ELAVDTWEAFLAQLGWAVEQVDRVICHQV-----GAAHTRAILKALGI--DPEKVFTTFPTLGNMGPASLPITLA-MAAE 310 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEecCCC-----CHHHHHHHHHHhCC--CHHHceehHhhhCCcHHhHHHHHHH-HHHH
Confidence 45556788999999999999999987543 23345578899998 332222222 23444444333333 2345
Q ss_pred cCC-CCCCEEEEEE
Q 012353 133 SSS-WDGRYGLVVC 145 (465)
Q Consensus 133 sg~-~~~~~aLVVa 145 (465)
.+. .+|+++|+++
T Consensus 311 ~g~~~~Gd~vll~~ 324 (338)
T PRK09258 311 EGFLKPGDRVALLG 324 (338)
T ss_pred hCCCCCCCEEEEEE
Confidence 543 2778888887
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=82.31 E-value=6.1 Score=39.86 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCC-CceeE-eecCcChhHHHHHHHHHHHHHc
Q 012353 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGV-DSTNACYGGTAALFNCVNWVES 133 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~-~~~~~-di~~aC~gg~~AL~~A~~~l~s 133 (465)
...++.+++|+++|++++|||.++.... .+.+-..+++.||+ .. +...+ ++.| |++. .-+.+-..++++
T Consensus 238 ~~~~~i~~~L~~~gl~~~did~~~~h~~-----~~~~~~~~~~~Lgl--~~~~~~~~~~~Gn-~~sa-s~~~~L~~~~~~ 308 (339)
T PRK06840 238 NFLKVIREALRKSGYTPKDIDYLAILHM-----KRSAHIALLEGLGL--TEEQAIYLDEYGH-LGQL-DQILSLHLALEQ 308 (339)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCc-----CHHHHHHHHHHcCC--CHHHeEeHHhccc-hhhh-hHHHHHHHHHHc
Confidence 3457889999999999999999876432 23334468899997 32 22211 2222 2222 222222344555
Q ss_pred CC-CCCCEEEEEE
Q 012353 134 SS-WDGRYGLVVC 145 (465)
Q Consensus 134 g~-~~~~~aLVVa 145 (465)
+. .+|+++|+++
T Consensus 309 ~~~~~Gd~ill~~ 321 (339)
T PRK06840 309 GKLKDGDLVVLVS 321 (339)
T ss_pred CCCCCCCEEEEEE
Confidence 53 2788898887
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.98 E-value=8.7 Score=39.93 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhh
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLF 263 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~ 263 (465)
+.+..+++. |++++|||.+-+|-+|.-+.-..++.|.|
T Consensus 281 aa~~a~~~A------gi~~~Didv~el~D~fa~~~l~~le~lGl 318 (403)
T PRK06289 281 AVLDAYRRA------GVGLDDLDGFEVHDCFTPSEYLAIDHIGL 318 (403)
T ss_pred HHHHHHHHc------CCCHHHCeEEeeeccchHHHHHHHHHcCC
Confidence 444444544 79999999999999999998888888843
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=81.33 E-value=6.7 Score=33.71 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
+.+.++++. +++++|+|.+=+|-+|.-..-...+.|
T Consensus 27 A~~~al~~a------g~~~~did~~Ei~EaFA~~~l~~~~~l 62 (123)
T PF02803_consen 27 AARKALERA------GLTPDDIDVIEINEAFAAQVLAFLEAL 62 (123)
T ss_dssp HHHHHHHHH------T--GGGESEEEE--SBHHHHHHHHHHH
T ss_pred HHHHHHHHh------CCCccccchhhccchhhhHHHHhhccc
Confidence 444555555 799999999999999998888877777
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=81.24 E-value=6.8 Score=39.00 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCC-CceeEeec--CcChhHHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDST--NACYGGTAALFNCVNWV 131 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~-~~~~~di~--~aC~gg~~AL~~A~~~l 131 (465)
....++.+++|+++|+++++|+.+++... .+..-..+.+.||+ +. +.. ..+. ..|.+...-+.++ .++
T Consensus 219 ~~~~~~~~~~l~~~g~~~~di~~~~~h~~-----~~~~~~~~~~~lgi--~~~k~~-~~~~~~Gn~~sas~~~~L~-~~~ 289 (318)
T TIGR00747 219 RKMGDVVEETLEANGLDPEDIDWFVPHQA-----NLRIIEALAKRLEL--DMSQVV-KTVHKYGNTSAASIPLALD-ELL 289 (318)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHcCC--CHHHee-ehHhhhCCHHHHHHHHHHH-HHH
Confidence 34566788999999999999999996432 33455678999998 32 222 2221 2343333333332 344
Q ss_pred HcCC-CCCCEEEEEE
Q 012353 132 ESSS-WDGRYGLVVC 145 (465)
Q Consensus 132 ~sg~-~~~~~aLVVa 145 (465)
+++. .+|+++|+++
T Consensus 290 ~~~~~~~Gd~vll~~ 304 (318)
T TIGR00747 290 RTGRIKPGDLLLLVA 304 (318)
T ss_pred HcCCCCCCCEEEEEE
Confidence 5542 3778999887
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=13 Score=39.21 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhh
Q 012353 219 TCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLF 263 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~ 263 (465)
.+.+.++++. |++++|||.+=+|-+|.-+.-..++.|.|
T Consensus 313 ~A~~~a~~~A------Gl~~~DiD~~Ei~daFa~~~l~~~e~lGl 351 (438)
T PTZ00455 313 AAAQKALSMA------GVKPSDLQVAEVHDCFTIAELLMYEALGI 351 (438)
T ss_pred HHHHHHHHHc------CCCHHHCcEeeecccChHHHHHHHHHcCC
Confidence 3444454554 89999999999999999988888888843
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.71 E-value=10 Score=39.31 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC---CC--CceeEeecCcChhHHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG---NT--DIEGVDSTNACYGGTAALFNCVNWV 131 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g---~~--~~~~~di~~aC~gg~~AL~~A~~~l 131 (465)
...|++++|+++|++++|||.+.+.- ..........+.||+.. |+ ...++-.-.+|+|...-+..+..+-
T Consensus 294 ~~~a~~~al~~Agl~~~dId~~e~~d-----~f~~~~l~~~e~lg~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~ 368 (394)
T PRK06445 294 PVPASKKALEKAGLSVKDIDLWEINE-----AFAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQ 368 (394)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEecc-----cchHHHHHHHHHhCCCccccCCCCCHHHcCCCccchHHHHHHHHHHHHH
Confidence 46799999999999999999998733 22233445567777620 01 1112222246777666666766664
Q ss_pred HcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 132 ESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 132 ~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
..+ +++.|+... -.|.-+.||||++
T Consensus 369 ~~~---~~~gl~~~~------------~~gg~g~a~~~e~ 393 (394)
T PRK06445 369 IKG---KDYGVATLC------------VGGGQGGAVVLER 393 (394)
T ss_pred hcC---CCEEEEEEc------------ccCChhhEEEEEc
Confidence 333 366666541 1344556777653
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=80.46 E-value=7.9 Score=38.56 Aligned_cols=77 Identities=12% Similarity=-0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCcee----Eeec-CcChhHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG----VDST-NACYGGTAALFNCVN 129 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~----~di~-~aC~gg~~AL~~A~~ 129 (465)
....++++++|+++|+.++|||.++..........+-....+...++. ..... -.++ ..++++...|..+..
T Consensus 205 ~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~G~~~aas~~~~l~~~~~ 281 (332)
T cd00825 205 EGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGD---KSPAVSATKAMTGNLSSAAVVLAVDEAVL 281 (332)
T ss_pred HHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCC---CCceeECCCcccccchhHhHHHHHHHHHH
Confidence 445578999999999999999999976544433222223333333431 11111 1333 355556666666666
Q ss_pred HHHcC
Q 012353 130 WVESS 134 (465)
Q Consensus 130 ~l~sg 134 (465)
.++.+
T Consensus 282 ~~~~~ 286 (332)
T cd00825 282 MLEHG 286 (332)
T ss_pred HHhcC
Confidence 55554
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=80.24 E-value=4.6 Score=41.28 Aligned_cols=97 Identities=10% Similarity=-0.049 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC---CCCceeE-eecC-cChhHHHHHHH
Q 012353 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG---NTDIEGV-DSTN-ACYGGTAALFN 126 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g---~~~~~~~-di~~-aC~gg~~AL~~ 126 (465)
.-.....+|++.++++.|+.++|.|.+++.+-.+-. ...++..||... .+..... .++| -|.+...+|..
T Consensus 206 ~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~~k~-----~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las 280 (377)
T COG3425 206 AYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPNGKF-----PKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLAS 280 (377)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhCeEEecCCCCch-----HHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHHH
Confidence 356777899999999999999999999987654433 233444444310 1233333 3544 55555555554
Q ss_pred HHHHHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeec
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVG 170 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~ 170 (465)
...-.. .+|+++|+++ +|-||++-..+
T Consensus 281 ~L~~a~---~~G~rIl~~S--------------YGSGa~s~~fs 307 (377)
T COG3425 281 LLDNAK---LPGDRILLFS--------------YGSGAGSEAFS 307 (377)
T ss_pred HHhhcC---CCCCEEEEEe--------------eCCCcceeEEE
Confidence 444333 2679999988 78888776554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 465 | ||||
| 2f82_A | 450 | Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo | 0.0 | ||
| 2fa3_A | 450 | Hmg-Coa Synthase From Brassica Juncea In Complex Wi | 0.0 | ||
| 2p8u_A | 478 | Crystal Structure Of Human 3-Hydroxy-3-Methylglutar | 1e-125 | ||
| 2wya_A | 460 | Crystal Structure Of Human Mitochondrial 3-Hydroxy- | 1e-125 | ||
| 1x9e_A | 383 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 1e-25 | ||
| 3v4x_A | 388 | The Biochemical And Structural Basis For Inhibition | 2e-25 | ||
| 2hdb_A | 383 | Hmg-coa Synthase From Enterococcus Faecalis. Mutati | 4e-25 | ||
| 1ysl_A | 402 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 2e-24 | ||
| 3v4n_A | 388 | The Biochemical And Structural Basis For Inhibition | 3e-24 | ||
| 1ysl_B | 384 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 3e-24 | ||
| 1xpk_C | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 3e-20 | ||
| 1xpk_D | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 3e-19 | ||
| 1xpl_B | 390 | Crystal Structure Of Staphylococcus Aureus Hmg-coa | 4e-19 | ||
| 3leh_A | 425 | The Crystal Structure Of Smu.943c From Streptococcu | 4e-19 | ||
| 1xpk_B | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 4e-19 | ||
| 1tvz_A | 388 | Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe | 5e-19 | ||
| 3sqz_A | 389 | Crystal Structure Of Hmg_coa Synthase Complexed Wit | 4e-18 |
| >pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450 | Back alignment and structure |
|
| >pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450 | Back alignment and structure |
|
| >pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478 | Back alignment and structure |
|
| >pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2) Length = 460 | Back alignment and structure |
|
| >pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis Length = 383 | Back alignment and structure |
|
| >pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By Hymeglusin Length = 388 | Back alignment and structure |
|
| >pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation Alanine 110 To Glycine Length = 383 | Back alignment and structure |
|
| >pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis With Acetoacetyl-Coa Ligand Length = 402 | Back alignment and structure |
|
| >pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By Hymeglusin Length = 388 | Back alignment and structure |
|
| >pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 | Back alignment and structure |
|
| >pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus Mutans Ua159 Length = 425 | Back alignment and structure |
|
| >pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 | Back alignment and structure |
|
| >pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450 | Back alignment and structure |
|---|
Score = 516 bits (1330), Expect = 0.0
Identities = 382/450 (84%), Positives = 419/450 (93%), Gaps = 2/450 (0%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS AV
Sbjct: 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAV 60
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
T+LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGT
Sbjct: 61 TSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGT 120
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKL 181
AAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESKL
Sbjct: 121 AALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKL 180
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
RGSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EKLEGK+FS+++A
Sbjct: 181 RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
DYFVFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+LS DESYQSRDLEKV
Sbjct: 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKV 300
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGL 361
SQQLAK YDAKVQP+TL+PKQVGNMYTASLYAA ASL+HNKHS+L GKRVV+FSYGSG
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGS 360
Query: 362 TATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVT 421
TATMFSL+L E PFSLSNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAK+FVT
Sbjct: 361 TATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVT 420
Query: 422 SKDSSL--LAPGTYYLTEVDSMYRRFYAKK 449
SK+ L LAPGTYYL EVDS+YRRFY KK
Sbjct: 421 SKEGILDLLAPGTYYLKEVDSLYRRFYGKK 450
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-169
Identities = 228/457 (49%), Positives = 306/457 (66%), Gaps = 8/457 (1%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
+ +VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V
Sbjct: 22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVV 81
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGT
Sbjct: 82 QNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGT 141
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKL 181
AA+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE L
Sbjct: 142 AAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGL 201
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK-----LEGKQF 236
RG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY C K K F
Sbjct: 202 RGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDF 261
Query: 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSR 296
+L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y R
Sbjct: 262 TLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 321
Query: 297 DLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLI-HNKHSELDGKRVVLF 355
D+EK + + L+ K + S L+ Q GNMYT+S+Y +LAS++ +L GKR+ +F
Sbjct: 322 DVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 381
Query: 356 SYGSGLTATMFSLKLSEGHHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHR 413
SYGSGL AT++SLK+++ P S + S+ ++ +L SR P+ F E MKL E
Sbjct: 382 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDT 441
Query: 414 YGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450
+ +++ L GT+YL VD +RR YA++P
Sbjct: 442 HHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 478
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396 | Back alignment and structure |
|---|
Score = 419 bits (1078), Expect = e-145
Identities = 103/453 (22%), Positives = 184/453 (40%), Gaps = 62/453 (13%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+GI ++ Y P V L K+ IG+GQ MA +D++SM A +
Sbjct: 2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKD 61
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
++ D K+IG + V +E+ +D +K+ + + + ACY T A
Sbjct: 62 IIT--DEDKKKIGMVIVATESAVDAAKAAAVQIHNLLG--IQPFARCFEMKEACYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + + SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQ------GKSLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDNA--------DETTQERL--------------------- 259
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLT 362
+ + + + VGN+YT SLY +L SL+ N G+ + LFSYGSG
Sbjct: 260 --------RSGYEDAVDYNRYVGNIYTGSLYLSLISLLEN-RDLQAGETIGLFSYGSGSV 310
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTS 422
+S L EG + L L +R E + + K R+ +F
Sbjct: 311 GEFYSATLVEG-----YKDHLDQAAHKALLNNRTEVSVDAYETFFK----RFDDVEFDEE 361
Query: 423 KDSSLLAPGTYYLTEVDSMYRRFYAKKPADVTN 455
+D+ +YL+ +++ R Y + + +
Sbjct: 362 QDAVHEDRHIFYLSNIENNVRE-YHRPELEHHH 393
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-131
Identities = 109/447 (24%), Positives = 177/447 (39%), Gaps = 64/447 (14%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
+ +GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A
Sbjct: 4 GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANA 63
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
+L K D + I + VG+E+ ID+SK+ L ++ + A YG
Sbjct: 64 AEAILTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMG--IQPFARSFEIKEAXYGA 119
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFES 179
TA L N V + + LVV D A Y PT GA AV MLV + +
Sbjct: 120 TAGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALK 177
Query: 180 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239
+ YDF++P YP+VDG LS Y+ + + + +
Sbjct: 178 EDNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVWDEHKKRT------GLDFA 230
Query: 240 NADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLE 299
+ D FH PY K+ +K+ + + EA +E++
Sbjct: 231 DYDALAFHIPYTKMGKKALLAKISDQ--------TEAEQERI------------------ 264
Query: 300 KVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGS 359
A+ + S + ++VGN+YT SLY L SL+ N + G ++ LFSYGS
Sbjct: 265 -----------LARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGS 313
Query: 360 GLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDF 419
G A F+ +L G N L L +R E + + +
Sbjct: 314 GAVAEFFTGELVAG-----YQNHLQKETHLALLDNRTELSIAEYEAMFA--------ETL 360
Query: 420 VTSKDSSLLAPGTYYLTEVDSMYRRFY 446
T D +L Y ++ +++ R +
Sbjct: 361 DTDIDQTLEDELKYSISAINNTVRSYR 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 80/497 (16%), Positives = 141/497 (28%), Gaps = 164/497 (32%)
Query: 1 MA---KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMS 57
+ K +A+D C+ + D + + L C+ E V+ M
Sbjct: 158 VLGSGKTW--VALD-----VCLSYKVQCKMDF---KIFWLNLKN-----CNSPETVLEM- 201
Query: 58 LTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIF--EKFGNT-DIEGVDST 114
+ LL Y+IDP R + S + + SI+ L ++ + + N + +
Sbjct: 202 ---LQKLL--YQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LL-- 251
Query: 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAP 174
N FN + C ++L
Sbjct: 252 NVQNAKAWNAFN----------------LSCK-------------------ILLTTRFKQ 276
Query: 175 VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLS----QTCYLMALDTCYKCLCSKYEK 230
V DF + + ++ + L+ K L + +
Sbjct: 277 VT--------------DFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQD 317
Query: 231 L--EGKQFS--------------LSNADYF--VFHSPYNKLVQKSFARL-------LFND 265
L E + L+ D + V +++ S L +F+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 266 ---FMRNASSVDEAAKEKLGPFSTLS---GDESYQSRDLEKVSQQLAKPLYDAKVQPSTL 319
F +A + P LS D D+ V +L K +L
Sbjct: 378 LSVFPPSA---------HI-PTILLSLIWFDVIKS--DVMVVVNKLHK---------YSL 416
Query: 320 IPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE------- 372
+ KQ T S+ + L +E R ++ Y T L
Sbjct: 417 VEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 373 --GHHPFSLSNILSVMNVAGKLKS-RHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLA 429
GHH L + ++ R F F+E K+ H A + S ++L
Sbjct: 476 HIGHH-------LKNIEHPERMTLFRMVFLDFRFLEQ-KI-RHDSTAWNASGSILNTLQQ 526
Query: 430 PGTY--YLTEVDSMYRR 444
Y Y+ + D Y R
Sbjct: 527 LKFYKPYICDNDPKYER 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 51/196 (26%)
Query: 191 DFYKPNLASEYPVVDGKLSQTCYLMAL--DTCYKC---------LCSKY---EKLEGKQF 236
+K +L + P T + ++ + K + Y + +
Sbjct: 410 KLHKYSLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 237 SLSNAD-YFVFHSPYN-KLVQKS-----FARLLFN-DFMRNASSVDEAAKEKLGPF-STL 287
D YF H ++ K ++ F + + F+ D A G +TL
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 288 SGDESYQSRDLEKVSQQLAK--PLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHS 345
L+ + P Y+ V N L +LI +K++
Sbjct: 525 Q--------QLKFYKPYICDNDPKYERLV-----------NAILDFLPKIEENLICSKYT 565
Query: 346 ELDGKRVVLFSYGSGL 361
+L R+ L + +
Sbjct: 566 DL--LRIALMAEDEAI 579
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Length = 374 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 53/332 (15%), Positives = 98/332 (29%), Gaps = 64/332 (19%)
Query: 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTDI 108
+ V ++ A L+ + D I + + T I I ++ + G N D+
Sbjct: 92 KKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGII----IPDVNFKLIDLLGLNKDV 147
Query: 109 EGVDSTN-ACYGGTAALFNCVNWVESSSWDGRYGLVVCTD--SAVYAEGPARPTG----- 160
E V C G ++L + ++S LVVCT+ S ++
Sbjct: 148 ERVSLNLMGCLAGLSSLRTAASLAKASP--RNRILVVCTEVCSLHFSNTDGGDQMVASSI 205
Query: 161 ---GAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL 217
G+AA ++ P + + + + PN T M
Sbjct: 206 FADGSAAYIIGCNPRIE-----ETPLYEVMCSINRSFPN--------------TENAMVW 246
Query: 218 DTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAA 277
D + EG L + V S V + ++ E
Sbjct: 247 D----------LEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEFL 296
Query: 278 KEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALA 337
G L + L + + + + + GNM +AS+ +
Sbjct: 297 IHTGGK------------SILMNIENSLG--IDPKQTKNTWDVYHAYGNMSSASVIFVMD 342
Query: 338 SLIHNKHSELDGKRVVLFSYGSGLTATMFSLK 369
+ S+ + ++G GL LK
Sbjct: 343 HA---RKSKSLPTYSISLAFGPGLAFEGCFLK 371
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A Length = 393 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 55/349 (15%), Positives = 101/349 (28%), Gaps = 79/349 (22%)
Query: 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTDI 108
VE++ ++ A ++++ +I L S + ID + ++ G +
Sbjct: 99 VEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISGID----MPGADYRLATLLGLPLTV 154
Query: 109 EGVDSTNA-CYGGTAALFNCVNWVESSSWDGRYGLVVCTD-SAVYAEGPARPT------- 159
+ + C+ G A L + E++ G LVV + + + GP
Sbjct: 155 NRLMIYSQACHMGAAMLRIAKDLAENNR--GARVLVVACEITVLSFRGPNEGDFEALAGQ 212
Query: 160 ----GGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLM 215
GA AVV VG D E + + + V G L
Sbjct: 213 AGFGDGAGAVV--VGADPLEGIEKPIYEIAAAMQETVAESQ-----GAVGGHLRAF---- 261
Query: 216 ALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRN---ASS 272
G F N + ++ + R L +
Sbjct: 262 -----------------GWTFYFLNQ---LP-----AIIADNLGRSLERALAPLGVREWN 296
Query: 273 VDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASL 332
++ + +L L K+ + + + GNM +A++
Sbjct: 297 DVFWVAHPGNW------------AIIDAIEAKLQ--LSPDKLSTARHVFTEYGNMQSATV 342
Query: 333 YAALASLIHNKHSELDGKR------VVLFSYGSGLTATMFSLKLSEGHH 375
Y + L E VL +G GL+ L+ HH
Sbjct: 343 YFVMDELRKRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSMPLHH 391
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A Length = 413 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 58/346 (16%), Positives = 109/346 (31%), Gaps = 85/346 (24%)
Query: 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTDI 108
+V ++ A ++++ I L S T D + ++ + G + +
Sbjct: 122 AMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPD----LPGADFEVAKLLGLHPSV 177
Query: 109 EGVD-STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTD-SAVYAEGPARPT------- 159
+ V + C+ G L + E++ G LV+C++ +AV GP+
Sbjct: 178 KRVGVFQHGCFAGGTVLRMAKDLAENNR--GARVLVICSETTAVTFRGPSETHLDSLVGQ 235
Query: 160 ----GGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLM 215
GA+A++ VG D E + PN SE + GK+ +
Sbjct: 236 ALFGDGASALI--VGADPIPQVEK--ACFEIVWTAQTVVPN--SEG-AIGGKVREVGLTF 288
Query: 216 ALD-----TCYKCLCSKYEK-LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRN 269
L + + + + S N ++V H
Sbjct: 289 QLKGAVPDLISANIENCMVEAFSQFKISDWNKLFWVVHPG-------------------- 328
Query: 270 ASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYT 329
++ + + KL L K+ P+ + + GNM +
Sbjct: 329 GRAILDRVEAKLN--------------------------LDPTKLIPTRHVMSEYGNMSS 362
Query: 330 ASLYAALASLIHN------KHSELDGKRVVLFSYGSGLTATMFSLK 369
A ++ L + + VLF +G GLT LK
Sbjct: 363 ACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLK 408
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Length = 382 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 47/345 (13%), Positives = 89/345 (25%), Gaps = 83/345 (24%)
Query: 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTDI 108
+ S + L+ ++ I + S T S+ +L+ + G ++
Sbjct: 81 EREAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLIN---EMGFDSTT 136
Query: 109 EGV-DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG------- 160
+ + C G AA+ ++ + L+V + P
Sbjct: 137 RQIPIAQLGCAAGGAAINRAHDFCTAYP--EANALIVACEFCSLCYQPTDLGVGSLLCNG 194
Query: 161 ----GAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMA 216
G AA V V L + +E + + T +
Sbjct: 195 LFGDGIAAAV--VRGRGGTGVR--LERNGSYLIPK-------TE-DWIMYDVKATGFHFL 242
Query: 217 LDTCYKCLCSKYEK-----LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAS 271
LD + S+ D+++ H R+L
Sbjct: 243 LDKRVPATMEPLAPALKELAGEHGWDASDLDFYIVH-AGGP-------RIL--------- 285
Query: 272 SVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTAS 331
+ L + + S + GN+ +A
Sbjct: 286 ---DDLSTFLE--------------------------VDPHAFRFSRATLTEYGNIASAV 316
Query: 332 LYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHP 376
+ AL L E +G R +L +G G+TA M
Sbjct: 317 VLDALRRLFDEGGVE-EGARGLLAGFGPGITAEMSLGCWQTADVR 360
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Length = 393 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 9e-04
Identities = 51/337 (15%), Positives = 93/337 (27%), Gaps = 72/337 (21%)
Query: 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTDI 108
E + +++ L +IG L + + T + + +++ + G + I
Sbjct: 110 YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFI-APGVDVAIVK---ELGLSPSI 165
Query: 109 EGVDSTNA-CYGGTAALFNCVNWVESSSWDGRYGLVVCTD-SAVYAEGPARPTG------ 160
V C AL N+V + LVVC + +V A
Sbjct: 166 SRVVVNFMGCAAAMNALGTATNYVRAHP--AMKALVVCIELCSVNAVFADDINDVVIHSL 223
Query: 161 ---GAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDG----KLSQTCY 213
G AA+V+ E S + V +LS+
Sbjct: 224 FGDGCAALVIGASQVQEKL-EPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLP 282
Query: 214 LMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSV 273
+ E L +S+ D + H P +++
Sbjct: 283 GYIFSGVAPVV---TEMLWDNGLQISDIDLWAIH-PGGP-------KII----------- 320
Query: 274 DEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLY 333
E + LG + S + + GNM + SL
Sbjct: 321 -EQSVRSLG--------------------------ISAELAAQSWDVLARFGNMLSVSLI 353
Query: 334 AALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370
L +++ S V F++G G+T +
Sbjct: 354 FVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDI 390
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 100.0 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 100.0 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 100.0 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 100.0 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 100.0 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 100.0 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 100.0 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 100.0 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 100.0 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 100.0 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 100.0 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 100.0 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 100.0 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 100.0 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 100.0 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 100.0 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 100.0 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 100.0 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 100.0 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 100.0 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 100.0 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 100.0 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 100.0 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 100.0 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 100.0 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 100.0 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 100.0 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 100.0 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 100.0 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 100.0 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 100.0 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 100.0 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 100.0 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 100.0 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 100.0 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.9 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.73 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.73 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.73 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 99.72 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 99.7 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.68 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 99.66 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 99.66 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 99.65 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 99.65 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.62 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 99.62 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.62 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 99.6 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.6 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.6 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 99.59 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.59 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 99.59 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 99.58 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.55 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 99.55 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 99.55 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.54 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 99.53 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.53 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.53 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 99.52 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 99.51 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 99.49 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 99.42 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 99.4 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 99.36 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 98.97 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.93 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 98.44 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.36 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 98.15 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 97.93 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 90.76 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 90.44 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 90.26 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 88.99 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 87.99 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 87.52 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 86.5 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 86.2 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 86.15 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 86.13 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 85.97 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 85.94 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 85.84 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 85.75 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 85.54 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 85.52 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 85.51 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 85.17 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 84.47 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 83.53 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 83.4 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 83.18 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 82.94 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 82.73 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 81.6 |
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-87 Score=704.05 Aligned_cols=450 Identities=50% Similarity=0.883 Sum_probs=411.1
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
||++|||.++++|+|+++|+++||++.+|++++||+.|+|+++++|++++||+++||++|+++||+++|++|++||+|||
T Consensus 2 m~~~VgI~~~g~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a~i~~~~Id~ii~ 81 (460)
T 2wya_A 2 MPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEV 81 (460)
T ss_dssp CCSSCEEEEEEEECCSEEEEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred CCCceEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 89999999999999999999999999999999999988898989999999999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCccc
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG 160 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~ 160 (465)
+|+|+++.+|+++++|+++||+.|++++.+||+++||+||++||.+|.+||++|.++++.++|+++|+..|.+++.++||
T Consensus 82 aT~t~~~~~ps~a~~v~~~l~~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~~~~~d~~~~~~~ 161 (460)
T 2wya_A 82 GTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTG 161 (460)
T ss_dssp ECSCCSCSSSCHHHHHGGGTGGGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEECCCSSTTGGGC
T ss_pred EeCCCCCCCCchHHHHHHHHhccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccccccccccccccC
Confidence 99999999999999999999986678999999999999999999999999999988677899999999999988899999
Q ss_pred ccceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh-----hcCC
Q 012353 161 GAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQ 235 (465)
Q Consensus 161 GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~-----~~~~ 235 (465)
||||+|||+++++++.+..+..++++.+.+|||+|..++++|.+||+++..+|+.+++++|+.+.+++... +..+
T Consensus 162 GdGA~A~l~~~~~~~~~~~~~~~~~~~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 241 (460)
T 2wya_A 162 GAGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRP 241 (460)
T ss_dssp EEEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cchHHhhhcccCCcceeecccccccccchhhhhccCCCCCCcccCCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998766667788889999999999988999999999999999999999999998887652 5578
Q ss_pred CCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccC
Q 012353 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQ 315 (465)
Q Consensus 236 ~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~ 315 (465)
++++|||+++|||||.+|+++++++|+++++...........++.++++.+++.++.+.+++++|......++.|..+++
T Consensus 242 ~~~~d~d~~v~Hqp~~r~~~k~~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e 321 (460)
T 2wya_A 242 FTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTK 321 (460)
T ss_dssp CCGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHSCHHHHHHHCGGGGGGTTCCGGGGGTCHHHHHHHHHHHHHHHHHHTG
T ss_pred CCHHHHhhhhhcccchHHHHHHHHHhcchhhhhcccchhhhhhhhhhhhcCCchhhhhhhhHHHHHHHHHHHHHhhcchh
Confidence 89999999999999999999999999988876544433333445556677899999999999999999999999999999
Q ss_pred CCcccccccCccchhhHHHHHHHHHHhc-CCCCCCCEEEEEEeccchheeeeEEEEeCCCCC-Cchhh-HHhhccHHHHh
Q 012353 316 PSTLIPKQVGNMYTASLYAALASLIHNK-HSELDGKRVVLFSYGSGLTATMFSLKLSEGHHP-FSLSN-ILSVMNVAGKL 392 (465)
Q Consensus 316 ~s~~~~~~~GN~~taS~~l~L~~ll~~~-~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~L 392 (465)
+++.+.+++|||||||+|++|++++++. +++++||||+|+|||||+++++|+++++++..+ ...++ +.+.+++.++|
T Consensus 322 ~~~~~~~~~GNt~sASiplaL~~ll~~~~~~~~~GdrIll~~fGSGl~s~~fs~~v~~~~~~~~~~~~~~~~~~~~~~~L 401 (460)
T 2wya_A 322 ASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRL 401 (460)
T ss_dssp GGGHHHHHHCCCGGGHHHHHHHHHHHHSCHHHHTTCEEEEEEEETTTEEEEEEEEECSCCSTTSHHHHHHHTTTTHHHHH
T ss_pred hhhhHHHhhCCcchhhHHHHHHHHHHhccccCCCCCEEEEEEecCCccceEEEEEEeCCccccchHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999862 345699999999999999999999999984331 12223 46678999999
Q ss_pred ccCCcCCHHHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeecc
Q 012353 393 KSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450 (465)
Q Consensus 393 ~~R~~l~~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~~ 450 (465)
++|+++|++||++++++|++.|+..+|.|.++.+.++||+|||++||++|||+|++||
T Consensus 402 ~~R~~~s~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~~l~~i~~~~~R~Y~~~~ 459 (460)
T 2wya_A 402 ASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 459 (460)
T ss_dssp HTSEEECHHHHHHHHHHHHHHTTCCSBCCCSCGGGSCTTCEEEEEECTTSCEEEEECC
T ss_pred hcCccCCHHHHHHHHHHHHHhccCCCCCCCCcccccCCCcEEeeecCCCceEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999997
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-84 Score=682.56 Aligned_cols=448 Identities=51% Similarity=0.877 Sum_probs=408.3
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
||+|||.+|++|+|+++|++++|++..|++++||..|+|++++.++.++|++.+||++|+++||+++|++|++||+||++
T Consensus 22 ~~~vgI~aig~y~P~~~v~~~el~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~agi~~~dId~li~~ 101 (478)
T 2p8u_A 22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVG 101 (478)
T ss_dssp HHCCEEEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCceEEEEEEEECCCeEecHHHHHHHhCCChhHhecccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 57899999999999999999999999999999998888888888888999999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCcccc
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGG 161 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~G 161 (465)
|+|+++..|+++++|++.|+++|.++++++|+++||+||+.||++|..||++|.||.++||||++|++.|.++++++|||
T Consensus 102 T~t~~~~~ps~a~~v~~~L~~lG~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia~~~~~~~~~~fG 181 (478)
T 2p8u_A 102 TETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGG 181 (478)
T ss_dssp CSCCSCSSSCHHHHHGGGTTTTTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEECCCSSTTGGGCE
T ss_pred ccCCcccCccHHHHHHHHHhhcCCCCceEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeeecccCCCCCCccc
Confidence 99999999999999998888766788999999999999999999999999999744699999999999998888899999
Q ss_pred cceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh-----hcCCC
Q 012353 162 AAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQF 236 (465)
Q Consensus 162 dGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~-----~~~~~ 236 (465)
|||+||||++++++.++....++++.+.+|||+|.++++||.+||++++.+|+.+++.+++.+.+++... .++++
T Consensus 182 dGA~A~Ll~~~~~~~l~~~~~gs~~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~l~~~~~~~~~~~g~ 261 (478)
T 2p8u_A 182 VGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDF 261 (478)
T ss_dssp EEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred ceeEEEEEecCCCceEeeccceecccchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHHHhhhccccccccCC
Confidence 9999999999987655554578888999999999988889999999999999999999998887776422 15688
Q ss_pred CCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCC
Q 012353 237 SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQP 316 (465)
Q Consensus 237 ~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~ 316 (465)
.++|||+|+|||||.+|+++++++|.+++|...+....+..|+.+.++..++.+++|+|+++||++...+++.|.+|++|
T Consensus 262 ~~~did~~v~H~~~~ki~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ek~~~~~~~~~~~~k~~~ 341 (478)
T 2p8u_A 262 TLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKA 341 (478)
T ss_dssp CGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHCTTGGGSGGGTTCGGGTTCCGGGCTTCHHHHHHHHHHTHHHHHHHTTG
T ss_pred ChHHcCEEEecCCcHHHHHHHHHHhCcccccccccccccccccccchhccCChhhcccchhHHHHHHHHhHHHHHHhHHH
Confidence 99999999999999999999999998887765544334445777777788999999999999999999999999999999
Q ss_pred CcccccccCccchhhHHHHHHHHHHhcCC--CCCCCEEEEEEeccchheeeeEEEEeCCCC-CCchhhHHhhc-cHHHHh
Q 012353 317 STLIPKQVGNMYTASLYAALASLIHNKHS--ELDGKRVVLFSYGSGLTATMFSLKLSEGHH-PFSLSNILSVM-NVAGKL 392 (465)
Q Consensus 317 s~~~~~~~GN~~taS~~l~L~~ll~~~~~--~~~G~rill~syGsG~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~L 392 (465)
++.+.+++|||||||+|++|++++++ ++ +++|++|+|+|||||++|++++++|+++.. +|.++++++.. ++.++|
T Consensus 342 ~~~~~~~~GN~~saSi~l~L~~ll~~-~~~~~~~Gdrill~s~GsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 420 (478)
T 2p8u_A 342 SLLVSNQNGNMYTSSVYGSLASVLAQ-YSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRL 420 (478)
T ss_dssp GGHHHHHHCCCGGGHHHHHHHHHHHH-SCHHHHTTCEEEEEEEETTTEEEEEEEEECSCCCTTSHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHh-CCccCCCCCEEEEEEEcchhhhEEEEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 66 679999999999999999999999998422 34499999988 999999
Q ss_pred ccCCcCCHHHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeecc
Q 012353 393 KSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450 (465)
Q Consensus 393 ~~R~~l~~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~~ 450 (465)
++|+.+||+||++++++|++.|++++|+|.++.+.++||+|||++|+++|||+|++++
T Consensus 421 ~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~r~Y~~~~ 478 (478)
T 2p8u_A 421 DSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 478 (478)
T ss_dssp HTSEECCHHHHHHHHHHHHHHTTCCSBCCCSCSTTSCTTCEEEEEECTTSCEEEEECC
T ss_pred hCCccCCHHHHHHHHHhhHhhcCCCCCCCCCCcccCCCceEEEeEEcCCCeEEEEeCC
Confidence 9999999999999999999999999999999988889999999999999999999864
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-83 Score=666.71 Aligned_cols=447 Identities=85% Similarity=1.337 Sum_probs=408.0
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
||+|||.+|++|+|+++|++++|++..|.+++||++|+|++++++++++|++.+||++|++++|+++|++|++||+||++
T Consensus 1 ~~~v~I~~ig~y~P~~~v~~~~l~~~~g~~~~~~~~g~G~~~~~~~~~~e~~~~La~~Aa~~aL~~agi~~~~Id~li~~ 80 (450)
T 2f82_A 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVG 80 (450)
T ss_dssp CCSCEEEEEEEECCSEEEEHHHHHHHTTCCTTTTTTTSCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCceEEEEEEEECCCeeccHHHHHHHhCCCHHHhhhhhCceeeeeCCCCCCHHHHHHHHHHHHHHHcCcCHHHCCEEEEE
Confidence 78999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccCCCCCcccc
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGG 161 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~G 161 (465)
|+++++..|+++.+|++.||++|+++++++|+++||+||+.||.+|..||++|.+|+++||||++|++.|.+...+++||
T Consensus 81 t~t~~~~~p~~a~~v~~~lgl~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~~~~~~~~~~fG 160 (450)
T 2f82_A 81 SETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGG 160 (450)
T ss_dssp CCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEECCSSSTTGGGCE
T ss_pred ecCCCCCCCcHHHHHHHHhCCcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeeccccCCCCCcccc
Confidence 99999999999999999999866678999999999999999999999999999766799999999999887767789999
Q ss_pred cceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 012353 162 AAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241 (465)
Q Consensus 162 dGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~di 241 (465)
|||+||||++++++.++.+..++++.+++|||+|.++++||.++|+.++++|++.++.+++.+++++...+++|++++||
T Consensus 161 DGA~A~ll~~~~~~~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl~~~di 240 (450)
T 2f82_A 161 AAAIAMLIGPDAPIVFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240 (450)
T ss_dssp EEEEEEEEESSCSEEEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGC
T ss_pred cceEEEEeccCCceEEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCCChhhc
Confidence 99999999998765444445677888889999998778899999999999999999999999998764323568999999
Q ss_pred ceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccc
Q 012353 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIP 321 (465)
Q Consensus 242 d~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~ 321 (465)
|+|++||||.+|+++++++|.+++|...+....+..|+++.++..++.+++|+||++||++.+++++.|++|+.||+.+.
T Consensus 241 d~~v~Hq~~~~i~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ek~~~~~~~~~~~~k~~~s~~~~ 320 (450)
T 2f82_A 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQLAKTYYDAKVQPTTLVP 320 (450)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHGGGTTCCHHHHHTCHHHHHHHHHHHHHHHHHHTGGGCHHH
T ss_pred CEEEecCChHHHHHHHHHHhcccccccccccccccccccccccccccccccccchhHHHHHhhhhHHHHHHhhhHHHHHH
Confidence 99999999999999999999888776655443445566666677889999999999999999999999999999999999
Q ss_pred cccCccchhhHHHHHHHHHHhcCC-CCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcCCH
Q 012353 322 KQVGNMYTASLYAALASLIHNKHS-ELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPP 400 (465)
Q Consensus 322 ~~~GN~~taS~~l~L~~ll~~~~~-~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l~~ 400 (465)
+++|||||||+|++|.+++++ ++ +++|++|+|+|||||+++++++++|.++..+|.++++++..++.++|++|+++||
T Consensus 321 ~~~GN~~saSi~l~L~~~l~~-~~~~~~Gd~ill~s~GsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 399 (450)
T 2f82_A 321 KQVGNMYTASLYAAFASLVHN-KHSDLAGKRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAP 399 (450)
T ss_dssp HHHCCCGGGHHHHHHHHHHHH-HGGGCTTCEEEEEEEETTTEEEEEEEEECCCCTTSSHHHHHHHHCHHHHHHTCEECCH
T ss_pred HhcCchHHHHHHHHHHHHHHh-CccCCCCCEEEEEeecCCcccEEEEEEEeCCCcchhHHHHHHhccHHHHHhCCccCCH
Confidence 999999999999999999998 54 7799999999999999999999999985445559999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCC--CCCCCCCcEEEEeeCCCceeEeeec
Q 012353 401 ENFVEVMKLMEHRYGAKDFVTSKD--SSLLAPGTYYLTEVDSMYRRFYAKK 449 (465)
Q Consensus 401 ~ey~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~L~~v~~~~~R~Y~~~ 449 (465)
+||+++++.|++.|++++|+|.++ .+.++||+|||++|+++|||+|++|
T Consensus 400 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~r~Y~~~ 450 (450)
T 2f82_A 400 EKFVETMKLMEHRYGAKEFVTSKEGILDLLAPGTYYLKEVDSLYRRFYGKK 450 (450)
T ss_dssp HHHHHHHHHHHHHTTCCSEECCCTTTGGGSCTTCEEEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHhHhhcCCCCCCCCCccccccCCCccEEEeEEcCCCeEEEeeC
Confidence 999999999999999999999988 6778899999999999999999975
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=570.58 Aligned_cols=382 Identities=28% Similarity=0.446 Sum_probs=334.3
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
+.|+|+|.++++|+|+++|+++++++.+|.+++|+..|+|++++++++++|++.+||++|++++|++++ +++||+||+
T Consensus 4 ~~m~v~I~~~g~y~P~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a~--~~~Id~li~ 81 (388)
T 3v4n_A 4 GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKED--KEAIDMVIV 81 (388)
T ss_dssp SSCCEEEEEEEEECCSEEEEHHHHHHHTTSCTHHHHTTTCCCEEECCCTTCCHHHHHHHHHHTTCCHHH--HHHEEEEEE
T ss_pred CceeEEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHHhCceEEEECCCCCCHHHHHHHHHHHHHHhCC--cccCCEEEE
Confidence 468999999999999999999999999999999998888999888999999999999999999999986 899999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-CCCCCcc
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPT 159 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~~~~~~t 159 (465)
+|+|+++..|+++.+|+++||+ .++++++|++++|+||+.||.+|..||++|. .++||||++|++++. +++++++
T Consensus 82 ~t~t~~~~~ps~a~~v~~~LGl--~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~--~~~vLVvg~e~~s~~~~~~~~~l 157 (388)
T 3v4n_A 82 GTESSIDESKAAAVVLHRLMGI--QPFARSFEIKEAXYGATAGLQLAKNHVALHP--DKKVLVVAADIAKYGLNSGGEPT 157 (388)
T ss_dssp ECSSCSBSSSCHHHHHHHHTTC--CSSCEEEEEESGGGHHHHHHHHHHHHHHHCT--TCEEEEEEEEEECCCTTCTTGGG
T ss_pred EeccCCCcCccHHHHHHHHcCC--CCCceEeehhhhhhHHHHHHHHHHHHHhcCC--CCEEEEEEehhhcccCCCCCCCc
Confidence 9999999999999999999998 5569999999999999999999999999995 499999999999764 4567899
Q ss_pred cccceeeeeecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012353 160 GGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238 (465)
Q Consensus 160 ~GdGA~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (465)
|||||+||||++++++ .++.. ...++.+.+|||+|. +..||.++|++++++|++.+++++++++++. |+++
T Consensus 158 fGDGA~A~ll~~~~~il~~~~~-~~~~~~~~~df~~p~-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~------g~~~ 229 (388)
T 3v4n_A 158 QGAGAVAMLVSSEPRILALKED-NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVWDEHKKRT------GLDF 229 (388)
T ss_dssp CEEEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBT-TCSSCEECHHHHHHHHHHHHHHHHHHHHHHH------CCCG
T ss_pred cccceeEEEeecCCCceEEecc-ccccchhccccccCC-CCCCceeccHhHHHHHHHHHHHHHHHHHHHh------CCCH
Confidence 9999999999998864 44432 345667889999998 4668999999999999999999999999987 7999
Q ss_pred CCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCc
Q 012353 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPST 318 (465)
Q Consensus 239 ~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~ 318 (465)
+|||+|+|||||+||++|+..+++.. ..+ ..++.+....++++
T Consensus 230 ~did~~v~Hqp~~k~~~ka~~ril~~-----------------------~~~--------------~~~~~l~~~~e~~~ 272 (388)
T 3v4n_A 230 ADYDALAFHIPYTKMGKKALLAKISD-----------------------QTE--------------AEQERILARYEESI 272 (388)
T ss_dssp GGCSEEEECCSSHHHHHHHHHHHSTT-----------------------SCH--------------HHHHHHHHHHHHHT
T ss_pred HHCCEEEeCCCcchHHHHHHHHHHhc-----------------------ccH--------------HHHHHhCCCHHHHh
Confidence 99999999999999999998887421 000 00111111222344
Q ss_pred ccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcC
Q 012353 319 LIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEF 398 (465)
Q Consensus 319 ~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l 398 (465)
.+.+++|||||||+|++|.+++++.+++++|++|+|+|||+|+++++|++++++ +++++++..++.++|++|++|
T Consensus 273 ~~~~~~GN~~sASi~l~L~~~l~~~g~~~~Gd~ill~s~GsG~~ae~~~~~v~~-----~~~~~~~~~~~~~~l~~r~~~ 347 (388)
T 3v4n_A 273 IYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVA-----GYQNHLQKETHLALLDNRTEL 347 (388)
T ss_dssp TTGGGTCCCGGGHHHHHHHHHHHHCSSCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGSCCHHHHHHHHHTCEEC
T ss_pred hHHHhcCchHHHHHHHHHHHHHHhcCcCCCCCEEEEEEecCcceeEEEEEEEcc-----CHHHHHHhhhHHHHHhCCccC
Confidence 455999999999999999999997456789999999999999999999999999 798888888999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEee
Q 012353 399 PPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYA 447 (465)
Q Consensus 399 ~~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~ 447 (465)
||++|+++++. +|+|.++.+.+.+|+|||++|++ |+|+|+
T Consensus 348 ~~~~y~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~-~~r~y~ 387 (388)
T 3v4n_A 348 SIAEYEAMFAE--------TLDTDIDQTLEDELKYSISAINN-TVRSYR 387 (388)
T ss_dssp CHHHHHHHHHC--------CCCTTSCEECCCSSTTCEEEEET-TEEEEC
T ss_pred CHHHHHHHHhc--------cCCCCCccccCCCCCEEEeeeeC-CEeecC
Confidence 99999999863 66888888777899999999999 599996
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-68 Score=551.32 Aligned_cols=387 Identities=25% Similarity=0.429 Sum_probs=343.1
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEe
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T 82 (465)
|+|+|.++++|+|+++|+++++++..|.+++||..++|++++.+++++|++.+|+++|++++|++ ++|++||.||++|
T Consensus 1 m~v~I~~ig~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~--~~~~~Id~li~~t 78 (396)
T 1xpm_A 1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITD--EDKKKIGMVIVAT 78 (396)
T ss_dssp -CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCH--HHHHHEEEEEEEC
T ss_pred CceEEEEEEEeCCCeEecHHHHHHHhCCCHHHHhhhcCceEEEeCCCCCCHHHHHHHHHHHHHhc--CCHHHCCEEEEEe
Confidence 57999999999999999999999999999999977777777778889999999999999999988 7899999999999
Q ss_pred ecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-CCCCCcccc
Q 012353 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGG 161 (465)
Q Consensus 83 ~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~~~~~~t~G 161 (465)
+++++..|+++.+|+..||+ ..++++++++++|+||+.||.+|..+|++|. .++||||++|..++. +++.+++||
T Consensus 79 ~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~--~~~vLvvg~e~s~~~~~~~~~~~~G 154 (396)
T 1xpm_A 79 ESAVDAAKAAAVQIHNLLGI--QPFARCFEMKEACYAATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQG 154 (396)
T ss_dssp SSCSBSSSCHHHHHHHHTTC--CSSCEEEEEESTTTTHHHHHHHHHHHHTTCT--TCEEEEEEEEEECCCTTCSSGGGCE
T ss_pred CCCCCCCCCHHHHHHHHhCC--CCCceEEEeccccHHHHHHHHHHHHHHHcCC--CCEEEEEeehhhccccCCCCCcccc
Confidence 99999999999999999998 5569999999999999999999999999995 499999999987663 445689999
Q ss_pred cceeeeeecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012353 162 AAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (465)
Q Consensus 162 dGA~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~d 240 (465)
|||+||||++++.+ .+..+ .++++.+.++||+|... .++.++|+.++++|++.+.++++.++++. |++++|
T Consensus 155 dGA~A~vl~~~~~i~~~~~~-~g~~~~d~~~~~~p~~~-~~~~~~G~~~~~~~~~~~~~~~~~~L~~a------gl~~~d 226 (396)
T 1xpm_A 155 AGAVAMVIAHNPSILALNED-AVAYTEDVYDFWRPTGH-KYPLVDGALSKDAYIRSFQQSWNEYAKRQ------GKSLAD 226 (396)
T ss_dssp EEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBTTC-SSCEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGG
T ss_pred cceEEEEeccCCceEEEEec-cccccceEEEeeccCCC-CCeEEEcHHHHHHHHHHHHHHHHHHHHHc------CCCHHH
Confidence 99999999988764 44444 67778888999999743 47889999999999999999999999887 789999
Q ss_pred CceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCccc
Q 012353 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLI 320 (465)
Q Consensus 241 id~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~ 320 (465)
||+|++|||+++|++++.++|+... ..+.++.|..+++||+.+
T Consensus 227 id~~~~H~~~~~~~~~~~~~l~~~~-------------------------------------~~~~~e~~~~~~~~s~~~ 269 (396)
T 1xpm_A 227 FASLCFHVPFTKMGKKALESIIDNA-------------------------------------DETTQERLRSGYEDAVDY 269 (396)
T ss_dssp CSEEEECCSSHHHHHHHHHTTGGGS-------------------------------------CHHHHHHHHHHHHHHTTG
T ss_pred CCEEEecCCchHHHHHHHHHHHhhc-------------------------------------ccCCHHHHHHHhhhhhhh
Confidence 9999999999999999998884210 023345567788999999
Q ss_pred ccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcCCH
Q 012353 321 PKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPP 400 (465)
Q Consensus 321 ~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l~~ 400 (465)
.+++|||||||+|++|.+++++ +++++|++|+|+|||+|+++++|+++|++ +++++++..++.++|++|+++||
T Consensus 270 ~~~~GN~~saSi~l~L~~~l~~-~~l~~Gd~ill~s~GsG~~~~~~~~~v~~-----~~~~~~~~~~~~~~l~~r~~~~~ 343 (396)
T 1xpm_A 270 NRYVGNIYTGSLYLSLISLLEN-RDLQAGETIGLFSYGSGSVGEFYSATLVE-----GYKDHLDQAAHKALLNNRTEVSV 343 (396)
T ss_dssp GGGTCCCGGGHHHHHHHHHHHH-SCCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGGCCHHHHHHHHHTCEECCH
T ss_pred hhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEECcchhheEEEEEEcc-----cHHHHhhcccHHHHHhCCccCCH
Confidence 9999999999999999999998 78889999999999999999999999999 79998888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCCCCCcEEEEeeCCCceeEeeecc
Q 012353 401 ENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 450 (465)
Q Consensus 401 ~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~~ 450 (465)
+||+++++.|++.+. +|.++.+.++||+|||++|+++|||+|.+|.
T Consensus 344 ~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~ 389 (396)
T 1xpm_A 344 DAYETFFKRFDDVEF----DEEQDAVHEDRHIFYLSNIENNVREYHRPEL 389 (396)
T ss_dssp HHHHHHHHHHHTTCC----CTTTTTGGGGTTSCEEEEEETTEEEEECCTT
T ss_pred HHHHHHHHhhhhccc----CCCCccccCCCCCEEEeEecccEEEEEEEec
Confidence 999999999887663 6667777678999999999998877777664
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-52 Score=420.94 Aligned_cols=307 Identities=18% Similarity=0.172 Sum_probs=253.2
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEE
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE 79 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li 79 (465)
|....|.++|.|+|+++|+|+|+++..+.+.+|+ ++||.+|+++ .++|++.+||++|+++||+++|++|++||+||
T Consensus 11 ~~~srI~g~g~ylP~~~v~n~el~~~~~~~~e~I~~rtGI~~R~~a--~~~e~~~~la~~Aa~~aL~~ag~~~~dId~li 88 (350)
T 4ewp_A 11 PAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRA--TAEETVPVMAVGAAREALERAGLQGSDLDAVI 88 (350)
T ss_dssp CSEEEEEEEEEECCSCEEEHHHHTTTTTCCHHHHHHHHCCSEEECC--CSSCCHHHHHHHHHHHHHHHTTCCGGGCSEEE
T ss_pred CCCCEEEEEEEEcCCCeEcHHHHHHHhCCCHHHHHhccCceEEEEc--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 5678899999999999999999999999999998 4899999854 78999999999999999999999999999999
Q ss_pred EEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC---C
Q 012353 80 VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG---P 155 (465)
Q Consensus 80 ~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~---~ 155 (465)
++|+|+++..|+++++||++||+ +++.+||+++||+|++.||.+|..+|++|.. ++||||++|.++. .++ .
T Consensus 89 ~~t~t~~~~~P~~a~~v~~~LGl---~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~--~~~Lvv~~E~~s~~~d~~~~~ 163 (350)
T 4ewp_A 89 VSTVTFPHATPSAAALVAHEIGA---TPAPAYDVSAACAGYCYGVAQADALVRSGTA--RHVLVVGVERLSDVVDPTDRS 163 (350)
T ss_dssp EECSCCSCSSSCHHHHHHHHTTC---TTSCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTCTT
T ss_pred EEeccCCCCCCchHHHHHHHhCC---CCceEEEeecchhhHHHHHHHhhhhhhCCCc--cceeEeeeeeceecccccccc
Confidence 99999999999999999999997 5567999999999999999999999999954 9999999999843 333 3
Q ss_pred CCcccccceeeeeecCCCCccccc---ccccccccCc------------ccccccCC---------C--CCCcccCCchh
Q 012353 156 ARPTGGAAAVVMLVGPDAPVAFES---KLRGSHMSHA------------YDFYKPNL---------A--SEYPVVDGKLS 209 (465)
Q Consensus 156 ~~~t~GdGA~A~Ll~~~~~~~~~~---~~~~~~~~~~------------~df~~p~~---------~--~~~p~~dg~~s 209 (465)
...+|||||+|+||++.+...+.. +..|...... .+.++... . ..+..++|+..
T Consensus 164 ~~~lfgDGA~A~vl~~~~~~~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 243 (350)
T 4ewp_A 164 ISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGPSV 243 (350)
T ss_dssp TGGGBCEEEEEEEEEEESSCCBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHHHH
T ss_pred cccccccchheeeeecccCCCccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhHHH
Confidence 457899999999998765321111 1111111100 00011000 0 01234678777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCC
Q 012353 210 QTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSG 289 (465)
Q Consensus 210 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (465)
++..++.+++++++++++. |++++|||+|++||++.++++++.++| ++|.
T Consensus 244 ~~~a~~~~~~~i~~~L~~~------gl~~~did~~v~Hq~~~~i~~~~~~~L------------------------gl~~ 293 (350)
T 4ewp_A 244 FRWAVWSMAKVAREALDAA------GVEPEDLAAFIPHQANMRIIDEFAKQL------------------------KLPE 293 (350)
T ss_dssp HHHHHHTHHHHHHHHHHHH------TCCGGGEEEEEECCSCHHHHHHHHHHT------------------------TCCT
T ss_pred HHHHHHhhhHHHHHHHHhh------cCChhHhceEEecCCCHHHHHHHHHHc------------------------CcCh
Confidence 7766778888888888876 799999999999999999999999988 7887
Q ss_pred CccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEE
Q 012353 290 DESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLK 369 (465)
Q Consensus 290 ~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~ 369 (465)
++.+.+ ++ +++|||++||+|++|..++++ +++++|++|+|++||+|++|++.+++
T Consensus 294 ~~~~~~--------~l----------------~~~GNtssasi~~~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~vlr 348 (350)
T 4ewp_A 294 SVVVAR--------DI----------------ADAGNTSAASIPLAMHRLLEE-NPELSGGLALQIGFGAGLVYGAQVVR 348 (350)
T ss_dssp TSEECC--------TH----------------HHHCBCGGGHHHHHHHHHHHH-CGGGTTSEEEEEEEETTTEEEEEEEE
T ss_pred HhEEec--------cc----------------ccccchHHHHHHHHHHHHHHh-CCCCCcCEEEEEEEchhhEeEEEEEE
Confidence 765421 33 799999999999999999998 88999999999999999999999999
Q ss_pred E
Q 012353 370 L 370 (465)
Q Consensus 370 ~ 370 (465)
|
T Consensus 349 ~ 349 (350)
T 4ewp_A 349 L 349 (350)
T ss_dssp C
T ss_pred e
Confidence 7
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=399.14 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=256.0
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhhh--hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|+..|.+++.|+|+.+|+++++++..+.+++|+. +||.+|+ ++.++|++.+|+++|++++|+++|++|++||.||+
T Consensus 8 ~~~~~~~~g~ylP~~~v~n~~l~~~~~~~~~~i~~~tGi~~R~--~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~vi~ 85 (323)
T 3il3_A 8 MNSRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERR--IAAEDETVATMGFEAAKNAIEAAQINPQDIELIIV 85 (323)
T ss_dssp CEECCCEEEEECCSCEEEHHHHHTTSSCCHHHHHHHTCCCEEE--CCCTTCCHHHHHHHHHHHHHHHHCCCGGGCCEEEE
T ss_pred ccCceeEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCCcEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 6789999999999999999999999999999984 6777766 55889999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCC---C
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGP---A 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~---~ 156 (465)
+|+++++..|+++.+|+..||+ +++++++++++|+|++.||.+|..+|++|.. ++||||++|.++. .++. .
T Consensus 86 ~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d~~~ 160 (323)
T 3il3_A 86 ATTSHSHAYPSAACQVQGLLNI---DDAISFDLAAACTGFVYALSVADQFIRAGKV--KKALVIGSDLNSRKLDETDRST 160 (323)
T ss_dssp ECSCCSCSSSCHHHHHHHHTTC---SSCEEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGSCCTTCTTT
T ss_pred EeCCCCCCCccHHHHHHHHhCC---CCccEEEECCccHHHHHHHHHHHHHHHCCCC--CEEEEEEeeccccccCcccccc
Confidence 9999988899999999999997 5789999999999999999999999999965 9999999999853 2332 3
Q ss_pred CcccccceeeeeecCCCCcccccccccccccCcccccccC-----CCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhh
Q 012353 157 RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPN-----LASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL 231 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~-----~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~ 231 (465)
..+|||||+|+||++++...+......+........+.|. ....|..++|+.+++.+.+.+++++++++++.
T Consensus 161 ~~lfGDGA~A~vl~~~~~~~i~~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~--- 237 (323)
T 3il3_A 161 VVLFGDGAGAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEETLLAN--- 237 (323)
T ss_dssp TTTBCEEEEEEEEEEESSCCEEEEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ccccccceEEEEEEEcCCCCeEEEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHHHHHc---
Confidence 4679999999999976521111001111111111122332 12235567899888888899999999888776
Q ss_pred hcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhh
Q 012353 232 EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYD 311 (465)
Q Consensus 232 ~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~ 311 (465)
|++++|||+|++||++.++++++.++| +++.++.+. ++
T Consensus 238 ---gl~~~did~~v~Hq~~~~i~~~~~~~l------------------------gl~~ek~~~---------~l------ 275 (323)
T 3il3_A 238 ---NLDKKDLDWLVPHQANLRIITATAKKL------------------------EMDMSQVVV---------TL------ 275 (323)
T ss_dssp ---TCCTTTCCEEEECCSCHHHHHHHHHHT------------------------TCCGGGBCC---------CH------
T ss_pred ---CCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CcCHHHhhc---------cH------
Confidence 799999999999999999999999988 788776542 34
Q ss_pred hccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 312 AKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 312 ~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++++|
T Consensus 276 ----------~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~~l~~ 323 (323)
T 3il3_A 276 ----------DKYANNSAATVPVALDEAIRD-GRIQRGQLLLLEAFGGGWTWGSALVRF 323 (323)
T ss_dssp ----------HHHCBCGGGHHHHHHHHHHHT-TSSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ----------hhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 799999999999999999998 889999999999999999999999986
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=390.95 Aligned_cols=306 Identities=15% Similarity=0.137 Sum_probs=253.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc-CCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD-GASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE 79 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~-g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li 79 (465)
++++|.+++.|+|+.+|+++++++.. +.+.+|+ ++||.+|++ +.++|+..+|+++|++++|+++|++|++||.||
T Consensus 29 ~~v~I~gig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~--a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~vi 106 (365)
T 3gwa_A 29 PRAAIADIAGHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERRI--AAPRETAADLAYEAARKLFAQGAVGADQVDFVI 106 (365)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHHHCTTCCHHHHHHHHCCCEEEE--CCTTCCHHHHHHHHHHHHHHTTSCCGGGCCEEE
T ss_pred ccEEEEEEEEeCCCcEEcHHHHHHHccCCCHHHHHHhcCccEEEE--CCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57999999999999999999999998 6788887 478888885 478999999999999999999999999999999
Q ss_pred EEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC--
Q 012353 80 VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA-- 156 (465)
Q Consensus 80 ~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~-- 156 (465)
++|++++...|+++.+|+..||+ ..++.+++++++|+|++.||.+|..+|++|.. ++||||++|.++. .++.+
T Consensus 107 ~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~dr~ 182 (365)
T 3gwa_A 107 LCTQAPDYVLPTSACMLQHRLGI--PTHAGALDVNLGCSGYVYGLSLAKGLVETGAA--RCVLLLTADTYSKYLHPLDKS 182 (365)
T ss_dssp EEESSCSCSBSCHHHHHHHHTTC--CTTSEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTTCHH
T ss_pred EEeCCCCCCCCcHHHHHHHHcCC--CCCceEEEecccChHHHHHHHHHHHHHHcCCC--CEEEEEEEchhhccCCccccc
Confidence 99999988899999999999998 45899999999999999999999999999965 9999999999854 23333
Q ss_pred -CcccccceeeeeecCCCCc--ccccccccccccCcccccccCCC----------------------CCCcccCCchhHH
Q 012353 157 -RPTGGAAAVVMLVGPDAPV--AFESKLRGSHMSHAYDFYKPNLA----------------------SEYPVVDGKLSQT 211 (465)
Q Consensus 157 -~~t~GdGA~A~Ll~~~~~~--~~~~~~~~~~~~~~~df~~p~~~----------------------~~~p~~dg~~s~~ 211 (465)
..+|||||+|+||++++.. .+......+.......++.|.++ ..+..++|+..++
T Consensus 183 ~~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~~v~~ 262 (365)
T 3gwa_A 183 VRTLFGDGASATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMA 262 (365)
T ss_dssp HHTTBCCEEEEEEEEEECSSSCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHHHHHH
T ss_pred ccccccceeEEEEEEecCCCCCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccHHHHH
Confidence 4679999999999986531 11110111111111111222111 1234567777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCc
Q 012353 212 CYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDE 291 (465)
Q Consensus 212 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 291 (465)
...+.+++++++++++. |++++|||+|++||++.++++.+.++| +++.++
T Consensus 263 ~~~~~~~~~i~~~L~~~------gl~~~did~~v~Hq~n~~i~~~~~~~L------------------------gl~~ek 312 (365)
T 3gwa_A 263 FSLAEVPRAADRLLALA------GEPRENIDCFVLHQANRFMLDALRKKM------------------------KIPEHK 312 (365)
T ss_dssp HHHHHHHHHHHHHHHHH------TCCGGGCSEEEECCCCHHHHHHHHHHH------------------------TCCGGG
T ss_pred HHHHHHHHHHHHHHHHc------CCCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHH
Confidence 77788888888888876 799999999999999999999999998 788776
Q ss_pred cccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 292 SYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 292 ~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
.+. ++ +++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++++|
T Consensus 313 ~~~---------~l----------------~~~GNtssAsipl~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~ll~~ 365 (365)
T 3gwa_A 313 FPV---------LM----------------EHCGNTVSSTLPLALETMRAN-GTLARGMRLMLLGFGVGYSWAGCLVNF 365 (365)
T ss_dssp SCC---------CC----------------TTTCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred HHH---------HH----------------hcccchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 542 34 899999999999999999998 889999999999999999999999987
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=394.70 Aligned_cols=307 Identities=15% Similarity=0.130 Sum_probs=254.5
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCCh-hhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASK-GKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~-~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
+++|.+++.|+|+++|+++++++..+.++ +|+ .+||.+|+ ++.++|+..+|+++|++++|+++|++|++||.||+
T Consensus 16 ~v~I~~ig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~--~a~~~~~~~~La~~Aa~~aL~~agi~~~~Id~vi~ 93 (354)
T 4efi_A 16 GARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRR--WADAQTSAGDLCRKAGEKLLAGLGWQADSIDALIF 93 (354)
T ss_dssp SEEEEEEEEEECSCEEEGGGGTTTSCHHHHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhCCCcHHHHHHhcCCeEEE--EcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 58999999999999999999999887644 777 47888877 45789999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC---
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA--- 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~--- 156 (465)
+|+++++..|+++.+|++.||+ +.++.+++++++|+|++.||.+|..+|++|.. ++||||++|.++. .++.+
T Consensus 94 ~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d~~~ 169 (354)
T 4efi_A 94 VSQTPNYRLPATAFVLQAELDL--PASCLALDINLGCSGYPQALWLGMNLIQTGAA--KRVLLAVGDTISKMIDPTDRST 169 (354)
T ss_dssp ECSSCSCSSSCHHHHHHHHTTC--CTTSEEEEECCCTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGCCTTCHHH
T ss_pred EeCCCCCCCCcHHHHHHHHcCc--CCCccEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCcccccc
Confidence 9999998899999999999997 56899999999999999999999999999965 9999999999853 33333
Q ss_pred CcccccceeeeeecCCCCcccccccccccccCcccccccCCCC----------------CCcccCCchhHHHHHHHHHHH
Q 012353 157 RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLAS----------------EYPVVDGKLSQTCYLMALDTC 220 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~----------------~~p~~dg~~s~~~y~~~~~~~ 220 (465)
..+|||||+|+||++++...+......+.......++.|.++. .+..++|+..++...+.++++
T Consensus 170 ~~lfGDGA~A~vl~~~~~~~~~~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 249 (354)
T 4efi_A 170 SLLFGDAGTMTALETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLNAVPKL 249 (354)
T ss_dssp HTTBCCEEEEEEEEECCSCCEEEEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEEEeecCCCCceEEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHHHHHHHHHH
Confidence 3689999999999987642110101122222222233332211 134567776666667888888
Q ss_pred HHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHH
Q 012353 221 YKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k 300 (465)
+++++++. |++++|||+|++||++.++++++.++| +++.++.+.
T Consensus 250 i~~~l~~~------gl~~~did~~v~Hq~~~~i~~~~~~~L------------------------gl~~ek~~~------ 293 (354)
T 4efi_A 250 VSRTLDIA------GRDKDSYDAFLFHQANLFMLKHLAKKA------------------------GLPAERVPV------ 293 (354)
T ss_dssp HHHHHHHH------TCCGGGCSEEEECCCCHHHHHHHHHHT------------------------TCCGGGSCC------
T ss_pred HHHHHHHc------CCCHHHCCEEEeCCCCHHHHHHHHHHh------------------------CcCHHHHHH------
Confidence 88888876 799999999999999999999999988 788776542
Q ss_pred HHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 301 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
++ +++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++++|.+
T Consensus 294 ---~l----------------~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~ll~~~~ 345 (354)
T 4efi_A 294 ---NI----------------GEYGNTSCASIPLLITTELKD-RLKEETLQLGMFGFGVGYSWASAALAVGP 345 (354)
T ss_dssp ---CH----------------HHHCBCGGGHHHHHHHHHSHH-HHHHSCEEEEEEEEETTTEEEEEEEEECC
T ss_pred ---HH----------------hhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhhhheeeEEEECC
Confidence 34 899999999999999999988 67789999999999999999999999986
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=385.53 Aligned_cols=305 Identities=17% Similarity=0.180 Sum_probs=254.3
Q ss_pred ceeEEeEEEEecCCceechHHHHHh-----cCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCc
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAH-----DGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQI 75 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~-----~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~I 75 (465)
|+|+|.++++|+|+.+++++++++. .+.+.+|+ ++||++|++ +.++|+..+|+++|++++|+++|+++++|
T Consensus 10 m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~~~~~~~~i~~rtgi~~r~~--~~~~~~~~~la~~Aa~~al~~ag~~~~~I 87 (333)
T 4dfe_A 10 IYSRVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARYF--AEPDVTTSDLAFIASQRAIEAADIDPQSI 87 (333)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHHHHC---CCCCHHHHHHHHCCSEEEE--CCTTCCHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred cceEEEEEEEECCCcEEcHHHHHHHhccccCCCCHHHhHHhcCceEEEE--cCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence 5799999999999999999999998 56667887 468888774 47899999999999999999999999999
Q ss_pred cEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC
Q 012353 76 GRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG 154 (465)
Q Consensus 76 d~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~ 154 (465)
|.|+++|+++++..|+++.+|+..||+ ++++.+++++++|+|++.||.+|..+|++|.. ++||||++|..+. .++
T Consensus 88 d~vi~~t~~~~~~~p~~a~~v~~~lgl--~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~ 163 (333)
T 4dfe_A 88 DLIIVATSTPDFVFPSTACLLQNKLGI--RNHGAAFDVQAVCSGFAYAVATADSFIRSGQH--RTALVIGAETFSRILDF 163 (333)
T ss_dssp CEEEEECSSCSSSBSCHHHHHHHHTTC--CSCCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCT
T ss_pred CEEEEEeCCCCCCCCcHHHHHHHHhCC--CCCCcEEEeCcccHHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccccCc
Confidence 999999999998899999999999998 57899999999999999999999999999965 9999999999843 222
Q ss_pred C---CCcccccceeeeeecCCCCcccccccccccccCcccccc-cCC-------CCCCcccCCchhHHHHHHHHHHHHHH
Q 012353 155 P---ARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYK-PNL-------ASEYPVVDGKLSQTCYLMALDTCYKC 223 (465)
Q Consensus 155 ~---~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~-p~~-------~~~~p~~dg~~s~~~y~~~~~~~~~~ 223 (465)
. ...+|||||+|+||++.+...+......+... ..+.++ |.. ...|..++|+.+++.+.+.+.+++++
T Consensus 164 ~d~~~~~lfGDGA~A~vl~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~ 242 (333)
T 4dfe_A 164 KDRTTCVLFGDGAGAVILQASDEPGVLASALHADGS-HSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKVAVE 242 (333)
T ss_dssp TCTTTTTTBCEEEEEEEEEEESSCSEEEEEEEECGG-GGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccEEEEEEEcCCCCeEEEEEEEccC-CcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHHHHH
Confidence 2 34679999999999986531111001111111 122222 210 12355688998888888999999988
Q ss_pred HHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHH
Q 012353 224 LCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQ 303 (465)
Q Consensus 224 ~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~ 303 (465)
++++. |++++|||+|++||++.++++.+.++| +++.++.+.
T Consensus 243 ~l~~~------gl~~~did~~~~Hq~~~~i~~~~~~~l------------------------gl~~~~~~~--------- 283 (333)
T 4dfe_A 243 ALEKA------NLSAEQIDWLIPHQANIRIMQSTCRKL------------------------GLPQERMIV--------- 283 (333)
T ss_dssp HHHHT------TCCGGGCSEEEECCSCHHHHHHHHHHT------------------------TCCGGGBCC---------
T ss_pred HHHHc------CCCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHHhhh---------
Confidence 88876 799999999999999999999999988 788776542
Q ss_pred hhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 304 QLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 304 ~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
++ +++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++++|
T Consensus 284 ~l----------------~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~ll~~ 333 (333)
T 4dfe_A 284 TV----------------GEHGNTSAASIPLALDVAVRD-GRIKRGQNVLIEGVGGGFTWGASVIRY 333 (333)
T ss_dssp CH----------------HHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred hH----------------HhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEC
Confidence 23 799999999999999999998 789999999999999999999999987
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=381.98 Aligned_cols=301 Identities=19% Similarity=0.207 Sum_probs=239.5
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRL 78 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~l 78 (465)
|+++++|.+++.|+|+++|+++++++..+.+.+|+ ++||.+|++ +.++| ..+|+++|++++|+++|+++++||.|
T Consensus 1 ~~~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~--a~~~e-~~~La~~Aa~~aL~~ag~~~~~Id~l 77 (321)
T 3il6_A 1 MKNYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERRI--VTQEN-TSDLCHQVAKQLLEKSGKQASEIDFI 77 (321)
T ss_dssp -CCEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHHHSCSEEEC--CSSCC-HHHHHHHHHHHHHHHHTCCGGGCCEE
T ss_pred CCCcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhhcCceEEEE--CCCCC-HHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 88999999999999999999999999999999988 378888874 46677 99999999999999999999999999
Q ss_pred EEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCC--
Q 012353 79 EVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGP-- 155 (465)
Q Consensus 79 i~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~-- 155 (465)
|++|+++++..|+++.+|++.||+ +++++++++++|+|++.||.+|..+|++|.. ++||||++|.++. .++.
T Consensus 78 i~~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~dr 152 (321)
T 3il6_A 78 LVATVTPDFNMPSVACQVQGAIGA---TEAFAFDISAACSGFVYALSMAEKLVLSGRY--QTGLVIGGETFSKMLDWTDR 152 (321)
T ss_dssp EEECSSCSCSSSCHHHHHHHHTTC---TTCEEEEECCGGGHHHHHHHHHHHHHHTSSC--CCEEEEEEECGGGGSCTTCT
T ss_pred EEEeCCCCcCCCcHHHHHHHHcCC---CCceEEEeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEEccccccCCcccc
Confidence 999999998899999999999997 4589999999999999999999999999965 9999999999843 3333
Q ss_pred -CCcccccceeeeeecCCCCcccccccccccccCcccccccCCCC------------CCcccCCchhHHHHHHHHHHHHH
Q 012353 156 -ARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLAS------------EYPVVDGKLSQTCYLMALDTCYK 222 (465)
Q Consensus 156 -~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~------------~~p~~dg~~s~~~y~~~~~~~~~ 222 (465)
...+|||||+|+||++++...+......+.......++.|..+. .|..++|+..++...+.++++++
T Consensus 153 ~~~~lfGDGA~A~vl~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~ 232 (321)
T 3il6_A 153 STAVLFGDGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQNIL 232 (321)
T ss_dssp TTGGGBCCEEEEEEEEEESSCCEEEEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHHHHHHH
T ss_pred ccceeeccccEEEEEEEcCCCCEEEEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHHHHHHH
Confidence 34679999999999987532111111122211111123332211 23345555433332333333332
Q ss_pred HHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHH
Q 012353 223 CLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302 (465)
Q Consensus 223 ~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~ 302 (465)
++ +.++|||+|++||++.++++.+.++| +++.++.+.
T Consensus 233 ----~~-------l~~~did~~v~Hq~~~~i~~~~~~~l------------------------gl~~ek~~~-------- 269 (321)
T 3il6_A 233 ----SL-------VTDETVDYLLLHQANVRIIDKIARKT------------------------KISREKFLT-------- 269 (321)
T ss_dssp ----TT-------CCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGGBCC--------
T ss_pred ----HH-------cCcccCCEEEEcCCCHHHHHHHHHHc------------------------CcCHHHhhh--------
Confidence 22 22789999999999999999999988 888876542
Q ss_pred HhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCC--CEEEEEEeccchheeeeEEEE
Q 012353 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDG--KRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 303 ~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G--~rill~syGsG~~~~~~~~~~ 370 (465)
++ +++|||++||+|++|.+++++ +++++| ++|++++||+|++|+++++++
T Consensus 270 -~l----------------~~~GNt~sasi~~~L~~~~~~-g~~~~G~~d~vll~~fG~G~t~~~~~l~v 321 (321)
T 3il6_A 270 -NM----------------DKYGNTSAASIPILLDEAVEN-GTLILGSQQRVVLTGFGGGLTWGSLLLTL 321 (321)
T ss_dssp -CG----------------GGTCBCGGGHHHHHHHHHHHT-TSSCTTSCCEEEEEEEETTTEEEEEEEEC
T ss_pred -hH----------------hhcccHHHHHHHHHHHHHHHh-CCCCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 34 899999999999999999998 889999 999999999999999999875
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=384.98 Aligned_cols=303 Identities=17% Similarity=0.160 Sum_probs=253.6
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEE
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE 79 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li 79 (465)
+++++|.+++.|+|+.+++++++++..+.+++|+ ++||.+|+ ++.++|+..+|+++|++++|+++|++|++||.||
T Consensus 23 ~~~~~I~~~g~~~P~~~v~~~~l~~~~~~~~~~i~~~tGi~~R~--~a~~~~~~~~La~~Aa~~aL~~agl~~~dId~vi 100 (359)
T 3h78_A 23 QGNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRY--HVEPEQAVSALMVPAARQAIEAAGLLPEDIDLLL 100 (359)
T ss_dssp -CCCEEEEEEEECCSEEEEHHHHTTTSSCCHHHHHHHHCCCEEE--ECCTTCCTHHHHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred CCCcEEEEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCceEEE--EcCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEEE
Confidence 3579999999999999999999999999999988 46888777 4478999999999999999999999999999999
Q ss_pred EEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC--
Q 012353 80 VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA-- 156 (465)
Q Consensus 80 ~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~-- 156 (465)
++|+++++..|+++.+|++.||+ +++.+++++++|+|++.||.+|..+|++|.. ++||||++|.++. .++.+
T Consensus 101 ~~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~--~~vLvvg~e~~S~~~~~~d~~ 175 (359)
T 3h78_A 101 VNTLSPDHHDPSQACLIQPLLGL---RHIPVLDIRAQASGLLYGLQMARGQILAGLA--RHVLVVCGEVLSKRMDCSDRG 175 (359)
T ss_dssp EECSSCSSSBSCHHHHHHHHHTC---CSCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEECGGGCCCSTTT
T ss_pred EEeCCCCCCCCcHHHHHHHHcCC---CCCcEEEECCHhHHHHHHHHHHHHHHHCCCc--CEEEEEEEchhcccCCccccc
Confidence 99999988899999999999997 4788999999999999999999999999965 9999999999843 33333
Q ss_pred C---cccccceeeeeecCCCC--ccc---ccccccccccCcccccccC---------------CCCCCcccCCchhHHHH
Q 012353 157 R---PTGGAAAVVMLVGPDAP--VAF---ESKLRGSHMSHAYDFYKPN---------------LASEYPVVDGKLSQTCY 213 (465)
Q Consensus 157 ~---~t~GdGA~A~Ll~~~~~--~~~---~~~~~~~~~~~~~df~~p~---------------~~~~~p~~dg~~s~~~y 213 (465)
+ .+|||||+|+||++++. ..+ .....+.+.+ ....|. ....|..++|+.+++.+
T Consensus 176 ~~t~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~ 252 (359)
T 3h78_A 176 RNLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFD---LLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHA 252 (359)
T ss_dssp HHHHTTBCEEEEEEEEECCSCSSSEEEEEEEEECGGGGG---GEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHH
T ss_pred ccccceecceeEEEEEEecCCCCCceEEEEEEEccCccc---eEEeCCCCCccCCccccccccccCCceEeccHHHHHHH
Confidence 2 56999999999998753 111 1111122211 111121 11224557888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccc
Q 012353 214 LMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESY 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 293 (465)
.+.+++++++++++. |++++|||+|++||++.+|++.+.++| +++.++.+
T Consensus 253 ~~~~~~~i~~~L~~~------gl~~~did~~v~Hq~n~~i~~~~~~~l------------------------gl~~ek~~ 302 (359)
T 3h78_A 253 SQTLVRIAGEMLAAH------ELTLDDIDHVICHQPNLRILDAVQEQL------------------------GIPQHKFA 302 (359)
T ss_dssp HHHHHHHHHHHHHHT------TCCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGGBC
T ss_pred HHHHHHHHHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CcCHHHhh
Confidence 899999999998886 799999999999999999999999998 88877655
Q ss_pred cchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 294 QSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 294 ~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
. ++ +++|||++||+|++|.+++++ +++|++|+|++||+|++|++++++|.+
T Consensus 303 ~---------~l----------------~~~GNt~sAsi~l~L~~~~~~---l~~Gd~vll~~fG~G~t~~~~ll~~~~ 353 (359)
T 3h78_A 303 V---------TV----------------DRLGNMASASTPVTLAMFWPD---IQPGQRVLVLTYGSGATWGAALYRKPE 353 (359)
T ss_dssp C---------CH----------------HHHCBCGGGHHHHHHHHHGGG---SCTTCEEEEEEEETTTEEEEEEEECC-
T ss_pred h---------hh----------------hcccchHHHHHHHHHHHHHHh---CCCCCEEEEEEEchhhhheeeeEEehh
Confidence 2 34 799999999999999999986 689999999999999999999999965
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=380.11 Aligned_cols=304 Identities=18% Similarity=0.180 Sum_probs=248.9
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc-------CCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcC
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD-------GASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPK 73 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~-------g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~ 73 (465)
++|+|.+++.|+|+.+|+++|+++.. +.+++|+ .+||.+|++ ++++|++.+|+++|++++|+++|++++
T Consensus 11 ~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~~tGi~~R~~--~~~~~~~~~La~~Aa~~al~~ag~~~~ 88 (345)
T 3s21_A 11 QNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRL--WDQDVQASDAATQAARKALIDANIGIE 88 (345)
T ss_dssp SSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHHTTCCSEEEE--CSSCCCHHHHHHHHHHHHHHHHTCCGG
T ss_pred cceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHHhhCceeEEE--CCCCCCHHHHHHHHHHHHHHHcCCCHH
Confidence 56999999999999999999998864 6778888 478888774 478999999999999999999999999
Q ss_pred CccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc--
Q 012353 74 QIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-- 151 (465)
Q Consensus 74 ~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-- 151 (465)
+||.||++|+++++..|+++.+|++.||+ .+++.+++++++|+|++.||.+|..+|++|.. ++||||++|..+.
T Consensus 89 ~Id~vi~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~ 164 (345)
T 3s21_A 89 KIGLLINTSVSRDYLEPSTASIVSGNLGV--SDHCMTFDVANACLAFINGMDIAARMLERGEI--DYALVVDGETANLVY 164 (345)
T ss_dssp GCCEEEECCSCCSCSSSCHHHHHHHHHTC--CTTCEEEECCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCHHHH
T ss_pred HCCEEEEEeCCCCCCCChHHHHHHHHhCC--CCCceEEeECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccchhh
Confidence 99999999999998899999999999998 55799999999999999999999999999965 9999999999832
Q ss_pred --c------CC-C--------CCcccccceeeeeecCCCCcccccccccccc---cCcccccccCCCCCCcccCCchhHH
Q 012353 152 --A------EG-P--------ARPTGGAAAVVMLVGPDAPVAFESKLRGSHM---SHAYDFYKPNLASEYPVVDGKLSQT 211 (465)
Q Consensus 152 --~------~~-~--------~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~---~~~~df~~p~~~~~~p~~dg~~s~~ 211 (465)
. +. + ...+|||||+|+||++++...-...+.++.+ .+..+++++.. .+..++|+..++
T Consensus 165 ~~~~~~~~~~~~~~~~f~~~~~~~~~GdGA~A~vl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~g~~v~~ 242 (345)
T 3s21_A 165 EKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNL--DRMVTDTRLLLI 242 (345)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHGGGGBCCEEEEEEEEEGGGSTTSCEEEEEEEEECGGGTTC-------------CHHHHH
T ss_pred ccccccccCCccchhhhhhhccceeeccceeEEEEecCCCCCCCcceeeeccccCcchhhhccccC--cceEEcHHHHHH
Confidence 1 11 1 1357999999999998653100011122211 12234455432 234678998888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCc
Q 012353 212 CYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDE 291 (465)
Q Consensus 212 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 291 (465)
.+.+.+.+++++++++. |++++|||+|++||++.++++++.++| +++.++
T Consensus 243 ~~~~~~~~~i~~~l~~~------gl~~~did~~v~Hq~~~~i~~~~~~~l------------------------gl~~ek 292 (345)
T 3s21_A 243 EGIKLAQKTFVAAKQVL------GWAVEELDQFVIHQVSRPHTAAFVKSF------------------------GIDPAK 292 (345)
T ss_dssp HHHHHHHHHHHHHHHHH------CCCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGG
T ss_pred HHHHHHHHHHHHHHHHc------CCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CcCHHH
Confidence 88888999999888876 799999999999999999999999988 788776
Q ss_pred cccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 292 SYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 292 ~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
.+. ++ +++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++++|
T Consensus 293 ~~~---------~l----------------~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~~l~w 345 (345)
T 3s21_A 293 VMT---------IF----------------GEHGNIGPASVPIVLSKLKEL-GRLKKGDRIALLGIGSGLNCSMAEVVW 345 (345)
T ss_dssp BCC---------CH----------------HHHCBCGGGHHHHHHHHHHHH-TCCCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred cee---------eH----------------hhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEChhhhheEEEEEC
Confidence 542 34 799999999999999999998 889999999999999999999999987
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=364.22 Aligned_cols=308 Identities=15% Similarity=0.104 Sum_probs=240.0
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc------------------------CCChhhh--hhhhcCeEEecCCC-------
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD------------------------GASKGKY--TIGLGQECMAFCSE------- 49 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~------------------------g~~~~k~--~~Gig~r~~av~~~------- 49 (465)
+++.|.++|.|+|+++|+|+|+++.. +.+.+|+ ++||.+|+++.+..
T Consensus 23 ~~~~I~gig~~~P~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~I~~~tGI~~R~~a~~~~~~~~~~~ 102 (392)
T 3led_A 23 RPAVIAATGLYTPPDSVSNAELVEAFNTYVANFNAANKARIEAGEIEPLQPSSSEFIEKASGIKSRYVVAKPGIVDPDVM 102 (392)
T ss_dssp CCEEEEEEEEECCSEEEEHHHHHHHHHHHHHHHHHHTHHHHHTTSSCCCCCCCHHHHHHHHCCCEEEESCCGGGGCTTTC
T ss_pred CceEEEEEEEeCCCceEcHHHHHHHHhhhhcccccccchhhhcccccccCCCcHHHHHHccCCceEEEecCccccccccc
Confidence 56999999999999999999998642 3456777 58999999764321
Q ss_pred --------C---CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcCh
Q 012353 50 --------V---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACY 118 (465)
Q Consensus 50 --------~---Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~ 118 (465)
+ +.+.+|+++|++++|+++|++|++||.||++|+++++..|+++..|+..||+ ++.++|++++|+
T Consensus 103 ~~~~~~r~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~vi~~t~t~~~~~p~~a~~v~~~LGl----~~~~~dv~~aC~ 178 (392)
T 3led_A 103 RPIIPERSNDELSILAEMAVTAAEQAIERWGKPRERIGAVLCACSNMQRAYPAMAIEVQNALGL----GGFAFDMNVACS 178 (392)
T ss_dssp SCCCCCCCTTSCCHHHHHHHHHHHHHHHHHCSCGGGEEEEEEESSCCSCSBSCHHHHHHHHTTC----CSEEEEEECGGG
T ss_pred ccccccchhcccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCccHHHHHHHHHhCC----CCeEEEECCccH
Confidence 1 1368999999999999999999999999999999998899999999999996 378999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC---CCCcccccceeeeeecCCCC----cccccccccccccC-c
Q 012353 119 GGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG---PARPTGGAAAVVMLVGPDAP----VAFESKLRGSHMSH-A 189 (465)
Q Consensus 119 gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~---~~~~t~GdGA~A~Ll~~~~~----~~~~~~~~~~~~~~-~ 189 (465)
|++.||.+|..+|++|.. ++||||++|.++. .++ ....+|||||+|+||++++. ..+......+...+ .
T Consensus 179 g~~~aL~~A~~~i~~g~~--~~vLvvg~E~~S~~~d~~dr~t~~lFGDGA~A~vl~~~~~~~~~~~i~~~~~~s~~~~~~ 256 (392)
T 3led_A 179 SATFGLKTAADFVGGGSV--DAVLMVNPEICSGHLNFRDRDSHFIFGDVATAAIVERADDAQGGWSILGTKLKTQFSNNI 256 (392)
T ss_dssp HHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTCTTTTTTBCEEEEEEEEEEGGGCCSSEEEEEEEEEECCCSSE
T ss_pred HHHHHHHHHHHHHHCCCC--CEEEEEeehhcCCcCCcCcccCCcccccccEEEEEEecCCCCCCCeEEEEEEEEcccccc
Confidence 999999999999999965 9999999999842 232 33578999999999987642 11211111111111 0
Q ss_pred ---cccccc---C---CCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHH
Q 012353 190 ---YDFYKP---N---LASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFAR 260 (465)
Q Consensus 190 ---~df~~p---~---~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~ 260 (465)
..+..+ . ....+..++|+..++...+.+++++++++++. |++++|||+|++||+|.+|++.+.++
T Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~~~i~~~L~~~------gl~~~dId~~v~Hqan~~i~~~~~~~ 330 (392)
T 3led_A 257 RNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVSEMIIEHAREI------GIDPHGLKRMWLHQANINMNEIIGRK 330 (392)
T ss_dssp EBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHHHHHHHHHHHHT------TCCGGGCSEEEECSSCHHHHHHHHHH
T ss_pred ccCCCcccCCCccccccccceEEechHHHHHHHHHHHHHHHHHHHHHc------CCCHHHCcEEEEcCCCHHHHHHHHHH
Confidence 000011 0 00123456788777777788888888888776 79999999999999999999999988
Q ss_pred hhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHH
Q 012353 261 LLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLI 340 (465)
Q Consensus 261 L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll 340 (465)
|+- + +++.++.+ .++ +++|||++||+|++|..+
T Consensus 331 llg-----------------l----~~~~~k~~---------~~l----------------~~~GNtssAsipl~L~~~- 363 (392)
T 3led_A 331 VLG-----------------R----DPTRDENV---------IIL----------------DDYANTSSAGSIIAFHKH- 363 (392)
T ss_dssp HHT-----------------S----CCCTTTBC---------CCH----------------HHHCBCGGGHHHHHHHHC-
T ss_pred hcC-----------------C----CCCHHHHH---------HHH----------------hhhCccHHHHHHHHHHHH-
Confidence 520 0 23444433 234 899999999999999986
Q ss_pred HhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 341 HNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 341 ~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
. +++++|++|+|++||+|++|++++++|.
T Consensus 364 -~-~~~~~Gd~vll~gfG~G~t~~~~ll~~~ 392 (392)
T 3led_A 364 -Q-DDMAQGDLGLICSFGAGYSAGTVFVQKR 392 (392)
T ss_dssp -C-TTCCTTCEEEEEEEETTTEEEEEEEEEC
T ss_pred -h-CCCCCCCEEEEEEEChhhEeEEEEEEEC
Confidence 3 5788999999999999999999999984
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-44 Score=360.73 Aligned_cols=304 Identities=16% Similarity=0.146 Sum_probs=234.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCC--CHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVE--DVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~E--d~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
++|+|.+++.|+|+.+++++++++....+..+-++||.+|+ +++++| ++.+|+++|++++|+++|++|++||.||+
T Consensus 4 ~~v~I~g~g~ylP~~~~~~~~~~~~~~~~~~~~~tGi~~r~--~a~~~e~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~ 81 (357)
T 3s3l_A 4 ENLFVSGVAAWLPPLSTAQDAVMAGLLDPARSKLRGIESVT--VASDAEEDAPPRMAARAARAALGRGDVDPADVSLVLH 81 (357)
T ss_dssp SSCEEEEEEEECCCEEEHHHHHHTTSSCHHHHHHHCCCEEE--CCCSSGGGSHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred CceEEEEEEEECCCCCCHHHHHHhcCCcHHHHHHcCceEEE--ecCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 56999999999999888888776543222222247888877 446677 99999999999999999999999999999
Q ss_pred Eeec---CCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCC--EEEEEEecccc--c-c
Q 012353 81 GSET---VIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGR--YGLVVCTDSAV--Y-A 152 (465)
Q Consensus 81 ~T~s---~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~--~aLVVasD~~~--y-~ 152 (465)
+|++ ++. ++.+.+|+.+||+ +++.++|++++|+|++.||.+|..+|++|.+ + +||||++|.++ + .
T Consensus 82 ~t~~~~~~d~--~~~a~~v~~~lG~---~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~--~~~~vLvvg~e~~s~~~~~ 154 (357)
T 3s3l_A 82 SSLWFQGIDL--WPAASYVAHEAVG---RHVPAFGLAQRCNGGMGAIELAGAYLGSGIG--AGHAALLTTGDRFAGPRID 154 (357)
T ss_dssp ECSSCCSSSS--SCHHHHHHHHHTC---SSSCEEEEECGGGHHHHHHHHHHHHHHTTSS--SSSEEEEEEEECCCTTTCC
T ss_pred EeccCCCccc--ccHHHHHHHHhCC---CCCcEEEEcCccHHHHHHHHHHHHHHHcCCC--CCCEEEEEEEecccccccc
Confidence 9984 433 3679999999997 5789999999999999999999999999966 7 99999999986 2 2
Q ss_pred CCC--CCcccccceeeeeecCCCCc-ccccccccccccCcccccccCCC--------CCCcccCCchhHH----------
Q 012353 153 EGP--ARPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLA--------SEYPVVDGKLSQT---------- 211 (465)
Q Consensus 153 ~~~--~~~t~GdGA~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~--------~~~p~~dg~~s~~---------- 211 (465)
++. ...+|||||+|+||++++.. .+......+... ..+++++... ..+..++|+..+.
T Consensus 155 ~~~~~~~~lfGDGA~A~vl~~~~~~~~i~~~~~~s~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 233 (357)
T 3s3l_A 155 RWNSVDVTMYGDGAAALVLSTRDGFARVLSTATGVDNS-LEILARGDEPFAPHPVEPSPVADLGTRTVRGAELADLPDLT 233 (357)
T ss_dssp TTTSSSSCCBCCEEEEEEEESSCCSEEEEEEEEEECGG-GGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHCCTTHH
T ss_pred cccccCCcccccccEEEEEecCCCCCeEEEEEEEEccC-hhhhcccCCCCCCCccCcCCccccccchhhhhcccchhhhH
Confidence 332 35789999999999987641 111111112221 1234432210 0112234442222
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeec-cCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCC
Q 012353 212 -CYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVF-HSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSG 289 (465)
Q Consensus 212 -~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~-H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (465)
.+.+.+.+++++++++. |++++|||+|++ ||++.+ ++.+.++| +++.
T Consensus 234 ~~~~~~~~~~i~~~L~~~------gl~~~did~~v~~hq~~~~-~~~~~~~l------------------------gl~~ 282 (357)
T 3s3l_A 234 HRYIDLLVAAKTQALEDA------GTAIEDIAHAVIPVSRRGT-GHELHDLL------------------------GLPD 282 (357)
T ss_dssp HHHHHHHHHHHHHHHHHT------TCCGGGCSEEECCSCCCCS-SCCHHHHH------------------------TSCG
T ss_pred HHHHHHHHHHHHHHHHHc------CCCHHHCCEEEecCcChHH-HHHHHHHc------------------------CCCH
Confidence 45567777777777776 799999999996 999998 88888888 8888
Q ss_pred CccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEE
Q 012353 290 DESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLK 369 (465)
Q Consensus 290 ~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~ 369 (465)
++.+. ++ .+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++++
T Consensus 283 ek~~~---------~~---------------~~~~GNt~aAsipl~L~~~~~~-g~l~~Gd~vll~~fG~G~t~~a~ll~ 337 (357)
T 3s3l_A 283 ERTSW---------AY---------------GRTTGHVGAGDQYAGLAHLVEN-ALVQPGDRVLLFGGGAGYTCTAAVVE 337 (357)
T ss_dssp GGBTH---------HH---------------HHHHCBCTTCHHHHHHHHHHHT-TCCCTTCEEEEECCBTTTEEEEEEEE
T ss_pred HHhHH---------Hh---------------ccccccchHhHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheeeeEE
Confidence 76542 22 2689999999999999999998 88999999999999999999999999
Q ss_pred EeC
Q 012353 370 LSE 372 (465)
Q Consensus 370 ~~~ 372 (465)
|.+
T Consensus 338 ~~~ 340 (357)
T 3s3l_A 338 ILR 340 (357)
T ss_dssp ECC
T ss_pred ecc
Confidence 975
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=352.09 Aligned_cols=306 Identities=18% Similarity=0.181 Sum_probs=248.7
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEE
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRL 78 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~l 78 (465)
|+|+++|.++++|+|+.+++++++++..+.+.+|+ .+||.+|+++ .+ ++..+|+++|++++|+++|+ ++||.|
T Consensus 2 ~~m~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~~-~~~~~la~~Aa~~al~~ag~--~~id~v 76 (331)
T 2x3e_A 2 MPRAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIA--GD-LGSGDLALRAASAALASAGL--ERVDAV 76 (331)
T ss_dssp --CEEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHHHHCCCEEECC--TT-CCHHHHHHHHHHHHHHHHTC--SCCSEE
T ss_pred CCceeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHHhhCceEEEec--CC-CCHHHHHHHHHHHHHHhCCc--ccCCEE
Confidence 45789999999999999999999999999888888 4788888754 33 89999999999999999999 899999
Q ss_pred EEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC-
Q 012353 79 EVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA- 156 (465)
Q Consensus 79 i~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~- 156 (465)
+++|+++++..|+++.+|+..||+ +++++++++++|+|++.||..|..+|++|.. ++|||+++|..+. .++.+
T Consensus 77 i~~t~~~~~~~p~~a~~v~~~lgl---~~~~~~~v~~aCas~~~Al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~ 151 (331)
T 2x3e_A 77 VLATSTGDFCCPATAPRVAARLGL---VGALAFDLSAAATGFVYGLASVGSLISAGLA--DSALLVGVDTFSHTLDPADR 151 (331)
T ss_dssp EEECSSCSEEESCSHHHHHHHTTC---TTSEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTTCH
T ss_pred EEEeCCCCCCCChHHHHHHHHhCC---CCCcEEEEcCcChHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccCCCcccc
Confidence 999999988789999999999997 3489999999999999999999999999966 9999999998742 23322
Q ss_pred --CcccccceeeeeecCCC--C-cccccccccccccCcccccccCCC---------CCCcccCCchhHHHHHHHHHHHHH
Q 012353 157 --RPTGGAAAVVMLVGPDA--P-VAFESKLRGSHMSHAYDFYKPNLA---------SEYPVVDGKLSQTCYLMALDTCYK 222 (465)
Q Consensus 157 --~~t~GdGA~A~Ll~~~~--~-~~~~~~~~~~~~~~~~df~~p~~~---------~~~p~~dg~~s~~~y~~~~~~~~~ 222 (465)
..+|||||+|+||++.+ . ..+......++......++.|.++ ..|..++|+..++.+.+.+.++++
T Consensus 152 ~~~~~~GdGA~A~vL~~~~~a~~~~i~~~~~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~ 231 (331)
T 2x3e_A 152 STRALFGDGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVR 231 (331)
T ss_dssp HHHHHBCCEEEEEEEEEECTTSTTBEEEEEEEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHH
T ss_pred ccceeeccccEEEEEEecCCCCCCceEEEEEEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHH
Confidence 35799999999998754 2 111100111111111112334322 124567888888877888888888
Q ss_pred HHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHH
Q 012353 223 CLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302 (465)
Q Consensus 223 ~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~ 302 (465)
+++++. |++++|||+|++|+++.++.+++.++| +++.++.+.
T Consensus 232 ~aL~~a------gl~~~did~~~~H~~~~~~~d~~~~~l------------------------g~~~~~~~~-------- 273 (331)
T 2x3e_A 232 RVLDRV------GWQASDLHHLVPHQANTRILAAVADQL------------------------DLPVERVVS-------- 273 (331)
T ss_dssp HHHHHH------TCCGGGCSEEEECCCCHHHHHHHHHHH------------------------TCCGGGBCC--------
T ss_pred HHHHHc------CCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CCCHHHHhh--------
Confidence 888876 799999999999999999999988887 666554331
Q ss_pred HhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 303 ~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
++ .++||+++||++++|..++++ +++++|++|++++||+|+++++++++|.+
T Consensus 274 -~~----------------~~~Gnt~sAs~~~~L~~~~~~-~~~~~G~~vll~~~G~G~~~~~~~l~~~~ 325 (331)
T 2x3e_A 274 -NI----------------AEVGNTVAASIPLALAHGLRQ-GILRDGGNMVLTGFGAGLTWGSVALRWPK 325 (331)
T ss_dssp -CH----------------HHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred -hH----------------hhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEeHHhhheeeEEEECC
Confidence 22 699999999999999999998 78899999999999999999999999965
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=343.71 Aligned_cols=305 Identities=20% Similarity=0.206 Sum_probs=248.0
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|+++|.++++|+|+.+++++++++..+.+++|+ ..||.+|++ +.++++..+|+++|++++|+++|+++++||.|++
T Consensus 1 ~~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~--~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~ 78 (317)
T 1hnj_A 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI--AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVV 78 (317)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEE--CCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CCcEEEEEEEeCCCceecHHHHHHHhCCCHHHHHHHhCceEEEe--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 478999999999999999999999988888887 468888775 4789999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC---
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA--- 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~--- 156 (465)
+|+++.+..|+.+.+|+..||+ ++++++++.++|++++.||..|..+|++|.+ +.|||+++|.... .++.+
T Consensus 79 g~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d~~~ 153 (317)
T 1hnj_A 79 ATTSATHAFPSAACQIQSMLGI---KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTDRGT 153 (317)
T ss_dssp ECSCCSCSSSCHHHHHHHHHTC---CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTCHHH
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCCeEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCchhccc
Confidence 9999988889999999999997 3478999999999999999999999999966 9999999998632 22222
Q ss_pred CcccccceeeeeecCCCCcccccccccccccCcccccccCC------CCCCcccCCchhHHHHHHHHHHHHHHHHHHhhh
Q 012353 157 RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNL------ASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK 230 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~------~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~ 230 (465)
..+|||||+|+||++.+...+.....+++......++.|.+ ...|+.++|+..++.+.+.+.+++++++++.
T Consensus 154 ~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~~a-- 231 (317)
T 1hnj_A 154 IIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAAN-- 231 (317)
T ss_dssp HTTBCCEEEEEEEEEESSCSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ceeeccccEEEEEEecCCCceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 35799999999998764211110011222211111233331 1234557888887888888888888888776
Q ss_pred hhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhh
Q 012353 231 LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLY 310 (465)
Q Consensus 231 ~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~ 310 (465)
|++++|||+|++|+++.++.+.+.+.| +++.++.+. +.
T Consensus 232 ----gl~~~did~v~~H~~~~~~~d~i~~~l------------------------g~~~~~~~~---------~~----- 269 (317)
T 1hnj_A 232 ----NLDRSQLDWLVPHQANLRIISATAKKL------------------------GMSMDNVVV---------TL----- 269 (317)
T ss_dssp ----TCCGGGCCEEEECCSCHHHHHHHHHHT------------------------TCCGGGBCC---------CH-----
T ss_pred ----CCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CCCHHHhHh---------hH-----
Confidence 799999999999999999999887776 565544321 12
Q ss_pred hhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 311 DAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 311 ~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
.++||+++||++++|..++++ +++++|++|++++||+|++|++++++|
T Consensus 270 -----------~~~Gn~~~As~~~~L~~~~~~-~~~~~G~~vll~~~G~G~t~~~~~l~~ 317 (317)
T 1hnj_A 270 -----------DRHGNTSAASVPCALDEAVRD-GRIKPGQLVLLEAFGGGFTWGSALVRF 317 (317)
T ss_dssp -----------HHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred -----------hhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhheeEEEEEEC
Confidence 689999999999999999998 788999999999999999999999986
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=343.05 Aligned_cols=306 Identities=19% Similarity=0.213 Sum_probs=249.4
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
++++|.++++|+|+.+++++++++..+.+++|+ ..||.+|+ ++.++++..+|+++|++++|+++|+++++||.|++
T Consensus 10 ~~~~I~gig~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi~ 87 (339)
T 1mzj_A 10 RFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRR--IAEPDETIQVMGVAASRRALEHAGVDPAEIDLVVV 87 (339)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CceEEEEEEEeCCCccccHHHHHHHhCCCHHHHHHhcCceEEE--EeCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 469999999999999999999999988888887 46888877 44678999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC---CC
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG---PA 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~---~~ 156 (465)
+|+++++..|+++.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. +.|||+++|..+. .++ ..
T Consensus 88 gt~~~~~~~p~~a~~v~~~lgl---~~~~~~~v~~aCas~~~Al~~A~~~i~~G~~--~~vLv~g~e~~s~~~~~~d~~~ 162 (339)
T 1mzj_A 88 STMTNFVHTPPLSVAIAHELGA---DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLADRSL 162 (339)
T ss_dssp ECSCCCCCSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSCTTT
T ss_pred EecCCCCCCChHHHHHHHHhCC---CCccEEEccccchHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCcccccc
Confidence 9999988889999999999997 3479999999999999999999999999966 9999999998742 122 23
Q ss_pred CcccccceeeeeecCCCCcccccccccccccCcccccc-----cCC------CCCCcccCCchhHHHHHHHHHHHHHHHH
Q 012353 157 RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYK-----PNL------ASEYPVVDGKLSQTCYLMALDTCYKCLC 225 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~-----p~~------~~~~p~~dg~~s~~~y~~~~~~~~~~~~ 225 (465)
..+|||||+|+||++.+...+......++.. ..|.+. |.. ...|..++|+.+++.+.+.+.+++++++
T Consensus 163 ~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~-~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL 241 (339)
T 1mzj_A 163 SFLFGDGAGAAVVGPSDVPGIGPVVRGIDGT-GLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREAL 241 (339)
T ss_dssp TTTBCEEEEEEEEEEESSCCBCCCEEEECGG-GGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeccCceEEEEEecCCCCeEEEEEEEcCC-CCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999876421111000111111 112111 211 1234567888888877788888888887
Q ss_pred HHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCC-ccccchhHHHHHHh
Q 012353 226 SKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGD-ESYQSRDLEKVSQQ 304 (465)
Q Consensus 226 ~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~d~~~~k~~~~ 304 (465)
++. |++++|||+|++|+++.++.+.+.+.| +++.+ +.+. +
T Consensus 242 ~~a------gl~~~did~v~~H~~~~~~~d~i~~~l------------------------g~~~~~~~~~---------~ 282 (339)
T 1mzj_A 242 EVA------GLTVGDLVAFVPHQANLRIIDVLVDRL------------------------GVPEHVVVSR---------D 282 (339)
T ss_dssp HTT------TCCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCTTSEECC---------T
T ss_pred HHc------CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCccceeee---------h
Confidence 765 799999999999999999999988877 66665 4331 2
Q ss_pred hhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 305 LAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 305 ~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
+ .++||+++||++++|..++++ +++++|++|++++||+|+++++++++|.+
T Consensus 283 ~----------------~~~Gn~~sAs~~~~L~~~~~~-g~~~~G~~vll~~~G~G~t~~~~~l~~~~ 333 (339)
T 1mzj_A 283 A----------------EDTGNTSSASVALALDRLVRS-GAVPGGGPALMIGFGAGLSYAGQALLLPD 333 (339)
T ss_dssp H----------------HHHCBCTTHHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred h----------------hhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEeCC
Confidence 2 689999999999999999998 78899999999999999999999999964
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=347.70 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=235.7
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc---CCChh---------hh--hhhhcCeEEecCCCCC-----------------
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD---GASKG---------KY--TIGLGQECMAFCSEVE----------------- 51 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~---g~~~~---------k~--~~Gig~r~~av~~~~E----------------- 51 (465)
..++|.+|+.|+|+++|+|+|+++.. ..+.+ ++ ++||.+|+++. ++|
T Consensus 15 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~--~~e~~~~~~~~~~~~~p~~~ 92 (393)
T 3ov2_A 15 GPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHL--TEEILKERPKLCSYKEASFD 92 (393)
T ss_dssp SCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSC--CHHHHHHSGGGGSSSSCCHH
T ss_pred CCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeec--ChhhhccCcccccCCCCCHH
Confidence 45899999999999999999999874 22222 24 48999998653 333
Q ss_pred --------CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCce-eEeecCcChhHHH
Q 012353 52 --------DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVDSTNACYGGTA 122 (465)
Q Consensus 52 --------d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~-~~di~~aC~gg~~ 122 (465)
+..+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|+++||+ ...+. +++++++|+|++.
T Consensus 93 ~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~~t~t~-~~~p~~a~~v~~~LGl--~~~~~~~~~v~~~C~g~~~ 169 (393)
T 3ov2_A 93 DRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISG-IDMPGADYRLATLLGL--PLTVNRLMIYSQACHMGAA 169 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC-CCBSCHHHHHHHHHTC--CTTSEEEEEESCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CCCCCHHHHHHHHcCC--CCCcceeeEEcCccHHHHH
Confidence 5899999999999999999999999999999999 7799999999999998 44443 8999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEEecccc--ccCCCC--------CcccccceeeeeecCCCCcccccccccccccCcccc
Q 012353 123 ALFNCVNWVESSSWDGRYGLVVCTDSAV--YAEGPA--------RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDF 192 (465)
Q Consensus 123 AL~~A~~~l~sg~~~~~~aLVVasD~~~--y~~~~~--------~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df 192 (465)
||.+|..+|++|.. ++||||++|.++ +.++.+ ..+|||||+|+||++++...+.......... ...
T Consensus 170 al~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~--~~~ 245 (393)
T 3ov2_A 170 MLRIAKDLAENNRG--ARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEIAAA--MQE 245 (393)
T ss_dssp HHHHHHHHHHHSTT--CEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTCCCSEEEEEE--EEE
T ss_pred HHHHHHHHHHcCCC--CEEEEEEEeccchhccCCcccchhhhcccccccCccEEEEEEecCCCcccCceeEEEec--CcE
Confidence 99999999999965 999999999984 433322 2469999999999987532111000000000 001
Q ss_pred cccCCCCC----------CcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CCCceeeccCCchHHHHHHHHHh
Q 012353 193 YKPNLASE----------YPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL-SNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 193 ~~p~~~~~----------~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~did~~~~H~p~~km~~~~~~~L 261 (465)
..|..... +..+ ++..++...+.+.++++.++++. |++. +|+ +|++||+|.+|++.+.++|
T Consensus 246 ~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~------gl~~~~di-~~v~Hq~n~~i~~~v~~~L 317 (393)
T 3ov2_A 246 TVAESQGAVGGHLRAFGWTFYF-LNQLPAIIADNLGRSLERALAPL------GVREWNDV-FWVAHPGNWAIIDAIEAKL 317 (393)
T ss_dssp ECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHTTSHHHHHHHHGGG------TCCSGGGS-EEEECCCCHHHHHHHHHHH
T ss_pred EecCCcccCceeeeCCceEEEE-CcHHHHHHHHHHHHHHHHHHHHc------CCCcccCc-EEEECCCChHHHHHHHHHc
Confidence 11211100 1112 24444555566777777777665 7886 888 9999999999999999999
Q ss_pred hhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHH
Q 012353 262 LFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIH 341 (465)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~ 341 (465)
|++.++.+.+ ..++ +++|||++||+|++|..+++
T Consensus 318 ------------------------gl~~ek~~~s------~~~l----------------~~~GNtssAsip~~L~~~~~ 351 (393)
T 3ov2_A 318 ------------------------QLSPDKLSTA------RHVF----------------TEYGNMQSATVYFVMDELRK 351 (393)
T ss_dssp ------------------------TCCTTTTHHH------HHHH----------------HHHCBCGGGHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHH------HHHH----------------HHhCChHHhHHHHHHHHHHH
Confidence 8888875421 0124 89999999999999999987
Q ss_pred h---cCCCCCC---CEEEEEEeccchheeeeEEEEeC
Q 012353 342 N---KHSELDG---KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 342 ~---~~~~~~G---~rill~syGsG~~~~~~~~~~~~ 372 (465)
+ .+++++| ++|+|++||+|++|+++++++.+
T Consensus 352 ~~~~~g~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 388 (393)
T 3ov2_A 352 RSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSMP 388 (393)
T ss_dssp HHHHTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred hhhhcCCcCCCCCCCeEEEEEECccceeeeeeeEEcc
Confidence 4 2677889 99999999999999999999987
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=331.40 Aligned_cols=302 Identities=16% Similarity=0.190 Sum_probs=247.3
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|+++|.++++|+|+.+++++++++..+.+++|+ ..||.+|+++ .+ ++..+|+++|++++|+++|+++++||.|++
T Consensus 1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~--~~-~~~~~l~~~a~~~al~~ag~~~~~id~v~~ 77 (309)
T 2ebd_A 1 MGTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIA--KE-ETITYMATQAAKEALREANLSPEELDLIIL 77 (309)
T ss_dssp CCEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEEC--SS-CCHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred CceEEEEEEEECCCceEcHHHHHHHcCCCHHHHHHHhCceeeeec--CC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 468999999999999999999999988888887 3788888865 33 899999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cC---CCC
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AE---GPA 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~---~~~ 156 (465)
+|.++++..|+.+.+|+..||+ +.++++++.++|++++.||..|..+|++|.. +.|||+++|.... .+ ...
T Consensus 78 ~~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~~~~~ 152 (309)
T 2ebd_A 78 ATLTPQKRFPSTACLVQAQLKA---KGVYAFDISAACSGFIYALDIADSFIKSGKA--KNVLVIGAEKLSEAVDWEDRST 152 (309)
T ss_dssp ECSSCSSSSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGTCCTTCTTT
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCceEEecCccchHHHHHHHHHHHHHHCCCC--CEEEEEEecccccccCccchhh
Confidence 9999988889999999999998 3478999999999999999999999999966 9999999998743 22 223
Q ss_pred CcccccceeeeeecCCCCc-ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 012353 157 RPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ 235 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~ 235 (465)
..+|||||+|+||++.+.. .+.....++.......+..|. ..++.++|+.+++.+.+.+.+++++++++. +
T Consensus 153 ~~~~gdGaaA~vL~~~~~~~~i~~~~~~~~g~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~i~~al~~a------g 224 (309)
T 2ebd_A 153 CVLFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADN--CGYIRMKGRELFKVAVRSMEEVCREVLEKA------G 224 (309)
T ss_dssp TTTBCEEEEEEEEEECSSSCEEEEEEEEECGGGGGGEEECT--TCCEEECHHHHHHHHHHHHHHHHHHHHHHH------T
T ss_pred ccccccccEEEEEEecCCCCceeEEEEEecCCccceeEeCC--CCeEEEccHHHHHHHHHHHHHHHHHHHHHc------C
Confidence 4689999999999987531 111101122222112233442 234567888777778888888888888876 7
Q ss_pred CCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccC
Q 012353 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQ 315 (465)
Q Consensus 236 ~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~ 315 (465)
++++|||++++|+++.++.+.+.+.| |++.++.+. ++
T Consensus 225 l~~~did~~~~H~~~~~~~~~~~~~l------------------------g~~~~~~~~---------~~---------- 261 (309)
T 2ebd_A 225 VKPEEVSLVIPHQANVRIINALAEKL------------------------NIPKEKVFV---------NI---------- 261 (309)
T ss_dssp CCGGGCSEEEECCSCHHHHHHHHHHT------------------------TCCGGGBCC---------CH----------
T ss_pred CCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHHhhh---------hH----------
Confidence 99999999999999999999877766 565544321 12
Q ss_pred CCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 316 PSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 316 ~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
.++||+++||++++|..++++ +++++|+++++++||+|+++++++++|
T Consensus 262 ------~~~Gh~~~As~~~~L~~~~~~-g~~~~G~~~l~~~~G~G~~~~~~~l~~ 309 (309)
T 2ebd_A 262 ------QKYGNTSAASIPIALHEAIKE-GKVKRGDLILMTAMGGGLTWGAVLLRY 309 (309)
T ss_dssp ------HHHCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ------hhhcchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhEEEEEEC
Confidence 689999999999999999998 788899999999999999999999986
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=331.93 Aligned_cols=305 Identities=18% Similarity=0.242 Sum_probs=247.7
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|+++|.++++|+|+.+++++++++..+.+++|+ ++||++|++ ..++++..+|+++|++++|+++|+++++||.|++
T Consensus 1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~--~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~ 78 (313)
T 1zow_A 1 MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHW--ADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIV 78 (313)
T ss_dssp CCEEEEEEEEECCSCEEEGGGGGGTSSCCHHHHHHHHCCSEEEC--CCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CceEEEEEEEECCCccccHHHHHHhcCCCHHHHHHhhCceEEEe--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 468999999999999999999999988888887 478888874 4678999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-ccCCCC---
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-YAEGPA--- 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-y~~~~~--- 156 (465)
+|+++++..|+++.+|+..||+ ++++++++.++|++++.||..|..+|++|.. +.|||+++|... ..++.+
T Consensus 79 ~~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 153 (313)
T 1zow_A 79 ATATGDMPFPTVANMLQERLGT---GKVASMDQLAACSGFMYSMITAKQYVQSGDY--HNILVVGADKLSKITDLTDRST 153 (313)
T ss_dssp ECSSCSCSSSCHHHHHHHHHTC---CSCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SCEEEEEEEEGGGTCCTTCHHH
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCCcEEEECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCcccccc
Confidence 9999988889999999999997 3478999999999999999999999999966 999999999863 223222
Q ss_pred CcccccceeeeeecCCCC-cccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 012353 157 RPTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ 235 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~ 235 (465)
..+|||||+|+||++.+. ..+......++......++.|.. ..+..++|+..++.+.+.+.+++++++++. |
T Consensus 154 ~~~~gdGa~A~vl~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~i~~al~~a------g 226 (313)
T 1zow_A 154 AVLFGDGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKD-TGKLKMNGREVFKFAVRIMGDASTRVVEKA------N 226 (313)
T ss_dssp HTTBCEEEEEEEEEECSTTCEEEEEEEEECGGGGGGEEECTT-TCCEEECHHHHHHHHHHHHHHHHHHHHHHT------T
T ss_pred eeeeccceEEEEEEecCCCCceeEEEEEEcCCCcCeEEecCC-CCeeEeccHHHHHHHHHHHHHHHHHHHHHc------C
Confidence 367999999999987653 11110011122111122344431 123446777776777777888888887775 7
Q ss_pred CCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccC
Q 012353 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQ 315 (465)
Q Consensus 236 ~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~ 315 (465)
++++|||++++|++++++.+.+.+.| +++.++.+. ++
T Consensus 227 l~~~did~~~~H~~~~~~~d~~~~~l------------------------g~~~~~~~~---------~~---------- 263 (313)
T 1zow_A 227 LTSDDIDLFIPHQANIRIMESARERL------------------------GISKDKMSV---------SV---------- 263 (313)
T ss_dssp CCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGGBCC---------CH----------
T ss_pred CCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHHHHH---------hH----------
Confidence 99999999999999999999988777 555544321 12
Q ss_pred CCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 316 PSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 316 ~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
.++||+++||++++|..++++ +++++|+++++++||+|+++++++++|+
T Consensus 264 ------~~~Gh~~~as~~~~L~~~~~~-~~~~~g~~vl~~~~G~G~t~~~~~l~~~ 312 (313)
T 1zow_A 264 ------NKYGNTSAASIPLSIDQELKN-GKLKDDDTIVLVGFGGGLTWGAMTIKWG 312 (313)
T ss_dssp ------HHHCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred ------hhhCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheEEEEEeC
Confidence 689999999999999999998 7888999999999999999999999985
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=347.69 Aligned_cols=310 Identities=15% Similarity=0.151 Sum_probs=246.0
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCCh---------hhh--hhhhcCeEE-ecCCC--------------------C
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASK---------GKY--TIGLGQECM-AFCSE--------------------V 50 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~---------~k~--~~Gig~r~~-av~~~--------------------~ 50 (465)
|+++|.++++|+|+++++++++++..+... +|+ ++||++|++ +.+++ +
T Consensus 31 ~~~~I~~ig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~a~~~~~~~~~~~~~p~~~~~r~~~~~ 110 (393)
T 1ted_A 31 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY 110 (393)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred cccEEEEeeeeCCCcccCHHHHHHHHHHhcccccHHHHHHHHHHhCCcCcceeeecChHhcccccccCCCCHHHHHHHHh
Confidence 468999999999999999999999877542 355 589999986 53210 4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee-cCcChhHHHHHHHHHH
Q 012353 51 EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS-TNACYGGTAALFNCVN 129 (465)
Q Consensus 51 Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di-~~aC~gg~~AL~~A~~ 129 (465)
++..+|+++|++++|+++|+++++||.||++|+++ +..|+++.+|+..||+ ...+.++++ +++|+|++.||.+|..
T Consensus 111 ~~~~~la~~Aa~~aL~~agl~~~~Id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCas~~~Al~~A~~ 187 (393)
T 1ted_A 111 EHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGL--SPSISRVVVNFMGCAAAMNALGTATN 187 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CccChHHHHHHHHcCc--CCCcceeEeccchhHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999 6789999999999998 455788998 8999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccccc-cCC-CC------CcccccceeeeeecCCCCc-----ccccccccccc---cCc--cc
Q 012353 130 WVESSSWDGRYGLVVCTDSAVY-AEG-PA------RPTGGAAAVVMLVGPDAPV-----AFESKLRGSHM---SHA--YD 191 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~y-~~~-~~------~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~---~~~--~d 191 (465)
+|++|.. ++||||++|..+. .++ .. ..+|||||+|+||++.+.. .+. .+.+..+ .+. .+
T Consensus 188 ~i~~G~~--~~vLv~g~e~~s~~~~~~~~r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~-~i~~~~~~~~~d~~~~~ 264 (393)
T 1ted_A 188 YVRAHPA--MKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKV-VVRSSFSQLLDNTEDGI 264 (393)
T ss_dssp HHHHSTT--CEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCE-EEEEEEEEECTTCTTSE
T ss_pred HHHcCCC--CEEEEEEEEeccccCCCCCCHHHhhhhhhhcCccEEEEEecCCCccccCccee-eeeccceEEcCCchhhc
Confidence 9999966 9999999998743 222 22 3579999999999876421 100 0112111 111 12
Q ss_pred ccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhccccc
Q 012353 192 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAS 271 (465)
Q Consensus 192 f~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~ 271 (465)
.|++. ...+..++|+..+..+.+.+.++++.++++. |++++|||+|++||++.++++.+.++|
T Consensus 265 ~~~~~-~~g~~~~~g~~v~~~~~~~~~~~i~~aL~~a------gl~~~dId~~~~H~~~~~i~d~~~~~l---------- 327 (393)
T 1ted_A 265 VLGVN-HNGITCELSENLPGYIFSGVAPVVTEMLWDN------GLQISDIDLWAIHPGGPKIIEQSVRSL---------- 327 (393)
T ss_dssp EEEEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHHHT------TCCGGGCSCEEECCSCHHHHHHHHHHH----------
T ss_pred cceec-CCCeEEecCchHHHHHHHHHHHHHHHHHHHc------CCCHhHCCEEEECCCcHHHHHHHHHHc----------
Confidence 33322 1123345677777777788888888888876 799999999999999999999998888
Q ss_pred chhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCC-CCCC
Q 012353 272 SVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSE-LDGK 350 (465)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~-~~G~ 350 (465)
+++.++.+. ...++ +++||+++||+|++|.+++++ +++ ++|+
T Consensus 328 --------------gl~~~k~~~------s~~~~----------------~~~GNt~sAsi~~~L~~~~~~-g~~~~~Gd 370 (393)
T 1ted_A 328 --------------GISAELAAQ------SWDVL----------------ARFGNMLSVSLIFVLETMVQQ-AESAKAIS 370 (393)
T ss_dssp --------------TCCGGGGHH------HHHHH----------------HHHCBCTHHHHHHHHHHHHHS-CSSSSSSE
T ss_pred --------------CCCHHHHHH------HHHHH----------------HhhCCchHhHHHHHHHHHHhc-CccCCCCC
Confidence 777765421 01234 899999999999999999998 777 4999
Q ss_pred EEEEEEeccchheeeeEEEEeC
Q 012353 351 RVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 351 rill~syGsG~~~~~~~~~~~~ 372 (465)
+|++++||+|++|++++++|..
T Consensus 371 ~vll~~~G~G~t~~~~~l~~~~ 392 (393)
T 1ted_A 371 TGVAFAFGPGVTVEGMLFDIIR 392 (393)
T ss_dssp EEEEEEEETTTEEEEEEEEECC
T ss_pred eEEEEEeccchhhhhhheeecc
Confidence 9999999999999999999864
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=349.77 Aligned_cols=316 Identities=17% Similarity=0.199 Sum_probs=241.5
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcC----CC--hhh---h--hhhhcCeEEecCCCC-------------------CC
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDG----AS--KGK---Y--TIGLGQECMAFCSEV-------------------ED 52 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g----~~--~~k---~--~~Gig~r~~av~~~~-------------------Ed 52 (465)
|++.|.+|++|+|+++|+|+++++..+ .. .+| + .+||.+|+++..+.. ++
T Consensus 30 ~~v~I~gigt~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~p~~~~~~~ps~~~r~~~~~~~ 109 (465)
T 3e1h_A 30 LGLSITGLGVQYPPYSLGPDAIDILSKRYHPESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFMSD 109 (465)
T ss_dssp CCEEEEEEEEECCSSCCBCTHHHHHTCSSSCCCHHHHHHHHHTTTSCCCCBCCSSCTTCGGGSSSSCCCHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcEEcHHHHHHHHHHhcccchhHHHHHHHHHhcCCceEEEeecccCcccccccCCCHHHHHHHHHhh
Confidence 679999999999999999999977643 12 234 3 489999997643211 23
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee-cCcChhHHHHHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS-TNACYGGTAALFNCVNWV 131 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di-~~aC~gg~~AL~~A~~~l 131 (465)
+.+|+++|+++||+++|+++++||+||++|++ .+..|+++.+|+++||+ .+.+.+||+ +++|+||+.||.+|..+|
T Consensus 110 a~~La~~Aa~~AL~~agi~~~dId~li~~t~t-~~~~P~~a~~v~~~LGl--~~~~~~~dv~~~~Csgg~~AL~~A~~~i 186 (465)
T 3e1h_A 110 GVPLAVEASRKAMAEARLVPAQITHMVSTTCT-DSANPGYDHYVAKELGL--SDRLEKVLLHGIGCSGGLAALRTAANLC 186 (465)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGCCEEEEECSS-CCCSSCHHHHHHHHHTC--CTTCEEEEECSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHhCC--CCCeeEEEecCCcchHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999 57799999999999998 445558999 799999999999999999
Q ss_pred Hc----CCCCCCEEEEEEecccc-ccC------------CCCCcccccceeeeeecCCCCc-cccc---ccccccc----
Q 012353 132 ES----SSWDGRYGLVVCTDSAV-YAE------------GPARPTGGAAAVVMLVGPDAPV-AFES---KLRGSHM---- 186 (465)
Q Consensus 132 ~s----g~~~~~~aLVVasD~~~-y~~------------~~~~~t~GdGA~A~Ll~~~~~~-~~~~---~~~~~~~---- 186 (465)
++ |.. ++||||++|..+ +.+ .....+|||||+|+||++++.. ..+. ...+...
T Consensus 187 ~a~~~~G~~--~~vLVvg~E~~S~~~~~~~~~~~~~~~d~~t~~LFGDGAaAvVl~~~~~~~~~~~~~~~l~~~~~~~~p 264 (465)
T 3e1h_A 187 LGHTARGKP--ARILVLALEVSTTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIP 264 (465)
T ss_dssp HHHHHTTCC--CEEEEEEEECCGGGHHHHHHHHHHHTCCCCHHHHBCCEEEEEEEECCTTCCTTCCCSEEEEEEEEEECT
T ss_pred hcccccCCC--CEEEEEEEeecchhcCcccccccccccccccccccccceeEEEEEccCCCccccccceeeccceEEEec
Confidence 97 855 999999999983 211 1223679999999999986421 0000 0111111
Q ss_pred --cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhh-hhcCCCCCCCCceeeccCCchHHHHHHHHHhhh
Q 012353 187 --SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEK-LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLF 263 (465)
Q Consensus 187 --~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~ 263 (465)
.+... |... ...+..++|+..++...+.+.++++.++++... +..++++++|||++ +||++.+|++.+.++|
T Consensus 265 ~~~~~~~-~~~~-~~g~~~~~g~~V~~~a~~~v~~~i~~~L~~~g~~L~~agl~~~DId~~-~Hqan~rIl~~v~~~L-- 339 (465)
T 3e1h_A 265 DSEHDLG-FDVD-PMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWA-MHPGGATILSGAESAM-- 339 (465)
T ss_dssp TCTTTEE-EEEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHHHHGGGSCTTSCSGGGSEEE-ECCSSHHHHHHHHHHH--
T ss_pred CCccccC-cccc-CCCceEecChHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHceEE-ecCCChHHHHHHHHHh--
Confidence 01111 1111 112345678877777778888999988887431 23457899999977 9999999999999998
Q ss_pred hhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhc
Q 012353 264 NDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNK 343 (465)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~ 343 (465)
+++.++...+ ...+ +++|||++||+|++|..++++.
T Consensus 340 ----------------------gl~~ek~~~s------~~~l----------------~~yGNtsSASip~aL~~~~~~~ 375 (465)
T 3e1h_A 340 ----------------------GLTPEHMRAS------YDRY----------------INHGNSSSATIFSVLNRLREKD 375 (465)
T ss_dssp ----------------------TCCGGGGHHH------HHHH----------------HHHCBCGGGHHHHHHHHHTSTT
T ss_pred ----------------------CcCHHHhHHH------HHHH----------------hcceechHhHHHHHHHHHHHhc
Confidence 8888765321 1223 7999999999999999998762
Q ss_pred -CCCCCC----CEEEEEEeccchheeeeEEEEeC
Q 012353 344 -HSELDG----KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 344 -~~~~~G----~rill~syGsG~~~~~~~~~~~~ 372 (465)
+++++| ++|+|++||+|++|++++++|..
T Consensus 376 ~g~l~~Gg~~~d~vll~gfG~Glt~~~~llr~~~ 409 (465)
T 3e1h_A 376 MDALAPGGKVKEYVVGCAFGPGINVEMCMLKRRM 409 (465)
T ss_dssp TTSCSSSSCCCSEEEEEEEETTTEEEEEEEEECC
T ss_pred ccccCCCCCCCCEEEEEEEhHHHhhhheeeEEec
Confidence 356666 99999999999999999999976
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=331.92 Aligned_cols=306 Identities=18% Similarity=0.214 Sum_probs=245.5
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
+++|.++++|+|+.+++++++++..+.+.+|+ ..||.+|+++ .++++..+|+++|++++|+++|+++++||.|+++
T Consensus 12 ~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~--~~~~~~~~la~~A~~~al~~ag~~~~~id~vi~~ 89 (335)
T 1u6e_A 12 SVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFA--ADDESAASMATEACRRALSNAGLSAADIDGVIVT 89 (335)
T ss_dssp CEEEEEEEEECCSEEEEHHHHTTSSSCCHHHHHHHHCCSEEEEC--CTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred ceEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCCceEeec--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 68999999999999999999999988888887 4788888754 6789999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCC---CCC
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEG---PAR 157 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~---~~~ 157 (465)
|+++++..|+++.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. ++|||+++|..+. .++ ...
T Consensus 90 t~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~~ 164 (335)
T 1u6e_A 90 TNTHFLQTPPAAPMVAASLGA---KGILGFDLSAGAAGFGYALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRGNC 164 (335)
T ss_dssp CSCCCCSSSCHHHHHHHHHTC---TTSEEEEEECGGGHHHHHHHHHHHHHHHTSC--SSEEEEEEEECGGGCCTTCTTTT
T ss_pred cCCCCCCCChHHHHHHHHhCC---CCCcEeeeccccHHHHHHHHHHHHHHHcCCC--CEEEEEEEcccccccCccccccc
Confidence 999988889999999999997 4688999999999999999999999999966 9999999998742 222 245
Q ss_pred cccccceeeeeecCCCCcccccccccccccCcccc--------cc--cCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 158 PTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDF--------YK--PNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 158 ~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df--------~~--p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
.+|||||+|+||++.+...+.....+++......+ |+ |.....+..++|+..+..+.+.+.+++++++++
T Consensus 165 ~~~gDGA~A~vl~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~ 244 (335)
T 1u6e_A 165 FIFADGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDA 244 (335)
T ss_dssp TTBCEEEEEEEEEECSSCCBCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeccccEEEEEEecCCCCeeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999987652111111112221111111 11 111112344677766565567777788888777
Q ss_pred hhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCC-ccccchhHHHHHHhhh
Q 012353 228 YEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGD-ESYQSRDLEKVSQQLA 306 (465)
Q Consensus 228 ~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~d~~~~k~~~~~~ 306 (465)
. |++++|||+|++|+++.++++.+.+.| |++.+ +.+. ++
T Consensus 245 a------gl~~~dId~~~~H~~~~~~~~~~~~~l------------------------g~~~~~~~~~---------~~- 284 (335)
T 1u6e_A 245 A------GVRPDQIDVFVPHQANSRINELLVKNL------------------------QLRPDAVVAN---------DI- 284 (335)
T ss_dssp H------TCCGGGCCEEEECCSCHHHHHHHHHHH------------------------TCCTTCEECC---------TH-
T ss_pred c------CCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCchhhhhh---------hh-
Confidence 6 799999999999999999999998887 66654 2221 12
Q ss_pred hhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 307 KPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 307 ~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
.++||+++||++++|.+++++ +++++|+++++++||+|+++++++++|.+
T Consensus 285 ---------------~~~Gnt~sAs~~~~L~~~~~~-~~~~~g~~~l~~~~G~G~t~~~~vl~~~~ 334 (335)
T 1u6e_A 285 ---------------EHTGNTSAASIPLAMAELLTT-GAAKPGDLALLIGYGAGLSYAAQVVRMPK 334 (335)
T ss_dssp ---------------HHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred ---------------hhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEeCC
Confidence 689999999999999999998 77889999999999999999999999854
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=343.58 Aligned_cols=306 Identities=14% Similarity=0.132 Sum_probs=236.3
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCC------h---hhh--hhhhcCeEEecCCC-----------------CCCHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGAS------K---GKY--TIGLGQECMAFCSE-----------------VEDVI 54 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~------~---~k~--~~Gig~r~~av~~~-----------------~Ed~~ 54 (465)
|+++|.++++|+|+.+++++++++..+.. . +|+ ++||.+|+++ .+ +++..
T Consensus 8 ~m~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~--~~~~~~~~~~~~~~r~~~~~~~~~ 85 (382)
T 1u0m_A 8 FMATLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIV--QPIEDTLEHPGFEDRNKVYEREAK 85 (382)
T ss_dssp --CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEES--SCHHHHTSCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEEEeCCCcccCHHHHHHHHHHhccChhhHHHHHHHHHhcCCCcceee--cChhhhccCCChhHHHHHHHHHHH
Confidence 34899999999999999999999876543 2 234 4799999865 44 67889
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee-cCcChhHHHHHHHHHHHHHc
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS-TNACYGGTAALFNCVNWVES 133 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di-~~aC~gg~~AL~~A~~~l~s 133 (465)
+|+++|++++|+++|+++++||.||++|+++ +..|+++.+|+..||+ ..++.++++ +++|+|++.||..|..+|++
T Consensus 86 ~la~~Aa~~aL~~agl~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCss~~~Al~~A~~~i~~ 162 (382)
T 1u0m_A 86 SRVPAVIQRALDDAELLATDIDVIIYVSCTG-FMMPSLTAWLINEMGF--DSTTRQIPIAQLGCAAGGAAINRAHDFCTA 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEEECSSS-CCSSCHHHHHHHHTTC--CTTCEEEEECSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEEEecCC-CCCCcHHHHHHHHhCC--CCCcceEEccCCcCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998 6789999999999998 455899999 89999999999999999999
Q ss_pred CCCCCCEEEEEEeccccc-cCCCC--------CcccccceeeeeecCCCCcccccccccccc---cCcc--cccccCCCC
Q 012353 134 SSWDGRYGLVVCTDSAVY-AEGPA--------RPTGGAAAVVMLVGPDAPVAFESKLRGSHM---SHAY--DFYKPNLAS 199 (465)
Q Consensus 134 g~~~~~~aLVVasD~~~y-~~~~~--------~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~---~~~~--df~~p~~~~ 199 (465)
|.. ++||||++|..+. .++.+ ..+|||||+|+||++.+.... .+.+..+ .+.. ..|.... .
T Consensus 163 g~~--~~vLv~g~e~~s~~~~~~d~~~~~~~~~~lfGDGA~A~vL~~~~~~g~--~i~~~~~~~~~~~~~~~~~~~~~-~ 237 (382)
T 1u0m_A 163 YPE--ANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGRGGTGV--RLERNGSYLIPKTEDWIMYDVKA-T 237 (382)
T ss_dssp STT--CEEEEEEEEEGGGGCCTTCCSHHHHHHHHHBCEEEEEEEEETTTCSEE--EEEEEEEEECSSCTTTEEEEEET-T
T ss_pred CCC--CEEEEEEEeccchhcCcccCCHHHhhccchhcCCcEEEEEeccCCCCc--EEEEeeeEecCChHHhcCceecC-C
Confidence 965 9999999998742 22221 357999999999997653110 1112111 1111 1122110 0
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhh
Q 012353 200 EYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKE 279 (465)
Q Consensus 200 ~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~ 279 (465)
.+....++.....+.+.+. +++.++++. |++++|||+|++|+++.++++.+.++|
T Consensus 238 g~~~~~~~~v~~~~~~~~~-~i~~aL~~a------gl~~~dId~v~~H~~~~~i~d~~~~~l------------------ 292 (382)
T 1u0m_A 238 GFHFLLDKRVPATMEPLAP-ALKELAGEH------GWDASDLDFYIVHAGGPRILDDLSTFL------------------ 292 (382)
T ss_dssp EEEEEECTTTGGGHHHHHH-HHHHHHHTT------SCCSSCCSCCEEECSHHHHHHHHHHHS------------------
T ss_pred ceEEEeCcHHHHHHHHHHH-HHHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHHHHc------------------
Confidence 0111223333344456667 777777665 899999999999999999999988877
Q ss_pred ccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEecc
Q 012353 280 KLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGS 359 (465)
Q Consensus 280 ~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGs 359 (465)
+++.++... ...++ +++||+++||+|++|.+++++ +++++|++|++++||+
T Consensus 293 ------gl~~~k~~~------s~~~~----------------~~~Gnt~sAsi~~~L~~~~~~-g~~~~Gd~vll~~~G~ 343 (382)
T 1u0m_A 293 ------EVDPHAFRF------SRATL----------------TEYGNIASAVVLDALRRLFDE-GGVEEGARGLLAGFGP 343 (382)
T ss_dssp ------CSCGGGGHH------HHHHH----------------HHTCBCTTHHHHHHHHHHHHS-CCCCSSCCCEEEEEET
T ss_pred ------CCCHHHHHH------HHHHH----------------HHhCCchhhHHHHHHHHHHHh-cCCCCCCEEEEEEEcc
Confidence 777665321 01233 899999999999999999998 7889999999999999
Q ss_pred chheeeeEEEEeC
Q 012353 360 GLTATMFSLKLSE 372 (465)
Q Consensus 360 G~~~~~~~~~~~~ 372 (465)
|++|++++++|..
T Consensus 344 G~t~~~~vl~~~~ 356 (382)
T 1u0m_A 344 GITAEMSLGCWQT 356 (382)
T ss_dssp TTEEEEEEEEEEC
T ss_pred cceeEEEEEEEee
Confidence 9999999999986
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=325.10 Aligned_cols=303 Identities=20% Similarity=0.208 Sum_probs=245.6
Q ss_pred eEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEe
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T 82 (465)
++|.++++|+|+.+++++++++..+.+++|+ ..||.+|++ +.++++..+|+++|++++|+++|+++++||.|+++|
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~--~~~~~~~~~la~~a~~~al~~ag~~~~~id~vi~~~ 79 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRV--AAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVAT 79 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEE--CCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEEC
T ss_pred cEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCceEEee--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 6999999999999999999999988888887 467777774 467899999999999999999999999999999999
Q ss_pred ecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC---Cc
Q 012353 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA---RP 158 (465)
Q Consensus 83 ~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~---~~ 158 (465)
+++++..|+.+.+|+..||+ ++++++++++|++++.||..|..+|++|.. +.|||+++|..+. .++.+ ..
T Consensus 80 ~~~~~~~~~~a~~v~~~lgl----~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d~~~~~ 153 (322)
T 1ub7_A 80 NTPDALFPDTAALVQARFGL----KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWNDRATAV 153 (322)
T ss_dssp SSCSEEESCHHHHHHHHTTC----CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTCHHHHT
T ss_pred CCCCCCCCcHHHHHHHHhCC----CCEEEeeCccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhccccChhhcccce
Confidence 99888788999999999996 478999999999999999999999999966 9999999998743 22222 35
Q ss_pred ccccceeeeeecCCCC-cccccccccccccCcccccccCCCC---------CCcccCCchhHHHHHHHHHHHHHHHHHHh
Q 012353 159 TGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLAS---------EYPVVDGKLSQTCYLMALDTCYKCLCSKY 228 (465)
Q Consensus 159 t~GdGA~A~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~---------~~p~~dg~~s~~~y~~~~~~~~~~~~~~~ 228 (465)
+|||||+|+||++.+. ..+......++......++.|.+++ .|..++|+..++.+.+.+.+++++++++.
T Consensus 154 ~~GdGA~A~vL~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~a 233 (322)
T 1ub7_A 154 LFGDGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKA 233 (322)
T ss_dssp TBCCEEEEEEEECCCTTCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccEEEEEEecCCCCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999998743 1111001111111111123332221 23456888888888888888888888876
Q ss_pred hhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhh
Q 012353 229 EKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKP 308 (465)
Q Consensus 229 ~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~ 308 (465)
+++++|||+|++|+++.++.+.+.+.| +++.++.+. ++
T Consensus 234 ------gl~~~did~~~~H~~~~~~~d~~~~~l------------------------g~~~~~~~~---------~~--- 271 (322)
T 1ub7_A 234 ------GLTPEDIRLFVPHQANLRIIDAARERL------------------------GLPWERVAV---------NV--- 271 (322)
T ss_dssp ------TCCGGGCSEEEECCSCHHHHHHHHHTT------------------------TCCGGGBCC---------CH---
T ss_pred ------CCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CCCHHHHHH---------HH---
Confidence 799999999999999999999877666 555544321 12
Q ss_pred hhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEe
Q 012353 309 LYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 309 ~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
.++||+++||++++|..++++ +++++|+++++.|||+|.++++++++|.
T Consensus 272 -------------~~~Gh~~~As~~~~l~~~l~~-g~~~~g~~~l~~~~G~G~~~~~~vl~~~ 320 (322)
T 1ub7_A 272 -------------DRYGNTSTASIPLALKEAVDA-GRIREGDHVLLVSFGAGLTWAAAVLTWG 320 (322)
T ss_dssp -------------HHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred -------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEChhheeEEEEEEeC
Confidence 689999999999999999998 7889999999999999999999999984
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=336.87 Aligned_cols=309 Identities=19% Similarity=0.249 Sum_probs=222.9
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcC---CCh---------hhh--hhhhcCeEEecCCCCC-----------------
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDG---ASK---------GKY--TIGLGQECMAFCSEVE----------------- 51 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g---~~~---------~k~--~~Gig~r~~av~~~~E----------------- 51 (465)
.+++|.+|++|+|+++|+|+|+++..+ .+. .++ .+||.+|+++. ++|
T Consensus 9 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~--~~e~~~~~~~~~~~~~p~~~ 86 (387)
T 3oit_A 9 GLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHH--TEEMLSAHPEFVDRDAPSLD 86 (387)
T ss_dssp SCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESC--CHHHHHHCGGGTCTTSCCHH
T ss_pred CCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeec--CHHHhccCccccccCCCCHH
Confidence 469999999999999999999998752 112 134 48999999764 333
Q ss_pred --------CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHH
Q 012353 52 --------DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTA 122 (465)
Q Consensus 52 --------d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~ 122 (465)
+..+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|+++||+ ...+ ++++++++|+|++.
T Consensus 87 ~r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~-~~~p~~a~~v~~~LGl--~~~~~~~~~~~~~C~~~~~ 163 (387)
T 3oit_A 87 ARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSG-AHVPGVDFRLVPLLGL--RPSVRRTMLHLNGCFAGCA 163 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC-CEESCHHHHHHHHHTC--CTTCEEEEEECCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCC-CCcccHHHHHHHHhCC--CCCcceeeEECchhHHHHH
Confidence 6899999999999999999999999999999999 6789999999999998 4444 38999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEEecccc--ccCCCC--------CcccccceeeeeecCCCC-c---cccccccccc---
Q 012353 123 ALFNCVNWVESSSWDGRYGLVVCTDSAV--YAEGPA--------RPTGGAAAVVMLVGPDAP-V---AFESKLRGSH--- 185 (465)
Q Consensus 123 AL~~A~~~l~sg~~~~~~aLVVasD~~~--y~~~~~--------~~t~GdGA~A~Ll~~~~~-~---~~~~~~~~~~--- 185 (465)
||.+|..+|++|.. ++||||++|.++ +.++.+ ..+|||||+|+||+++++ . .+.....++.
T Consensus 164 al~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~~p 241 (387)
T 3oit_A 164 ALRLAKDLAENSRG--ARVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTIIP 241 (387)
T ss_dssp HHHHHHHHHHSSTT--CEEEEEEEECGGGTCCCCCSSSCHHHHHHHHBCCEEEEEEEESSCCSSCCCCEEEEEEEEEECT
T ss_pred HHHHHHHHHhcCCC--CEEEEEEEeccchhccCccccchHhhhcccccccceEEEEEecCCCcccCCceEEEecccEEeC
Confidence 99999999999955 999999999984 333322 246999999999998752 1 0110001110
Q ss_pred -ccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc--eeeccCCchHHHHHHHHHhh
Q 012353 186 -MSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD--YFVFHSPYNKLVQKSFARLL 262 (465)
Q Consensus 186 -~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did--~~~~H~p~~km~~~~~~~L~ 262 (465)
+.+.++......+. +..++ +.......+.+.++++.++++.. .+.|++ |+| +|++||+|.+|++.+.++|
T Consensus 242 ~~~~~~~~~~~~~g~-~~~~~-~~v~~~~~~~~~~~~~~~L~~~~--~~~gl~--d~d~~~~v~Hq~n~~il~~v~~~L- 314 (387)
T 3oit_A 242 ESDHALNMRFTERRL-DGVLG-RQVPGLIGDNVERCLLDMFGPLL--GGDGGG--GWNDLFWAVHPGSSTIMDQVDAAL- 314 (387)
T ss_dssp TCTTSEEEEECSSSE-EEEEC-TTHHHHHHHHHHHHHHHHTGGGC--C--------GGGSEEEECCCCHHHHHHHHHHH-
T ss_pred CChhhccceeecCCe-EEEEC-cHHHHHHHHHHHHHHHHHHHhhc--ccCCCC--cccccEEEECCCCHHHHHHHHHHc-
Confidence 01111110000011 11122 33444445566666666654430 000454 566 9999999999999999998
Q ss_pred hhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHh
Q 012353 263 FNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHN 342 (465)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~ 342 (465)
+++.++...+ ..++ +++|||++||+|++|..+++.
T Consensus 315 -----------------------gl~~ek~~~s------~~~l----------------~~~GNtssAsip~~L~~~~~~ 349 (387)
T 3oit_A 315 -----------------------GLEPGKLAAS------RRVL----------------SDYGNMSGATVIFALDELRRQ 349 (387)
T ss_dssp -----------------------TCCTTTTHHH------HHHH----------------HHHCBCGGGHHHHHHHHHHHC
T ss_pred -----------------------CCCHHHHHHH------HHHH----------------HHhCchHHhHHHHHHHHHHHh
Confidence 8888765421 1124 899999999999999998775
Q ss_pred cCCCCCC------CEEEEEEeccchheeeeEEEEeC
Q 012353 343 KHSELDG------KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 343 ~~~~~~G------~rill~syGsG~~~~~~~~~~~~ 372 (465)
++++| ++|+|++||+|++|+++++++.+
T Consensus 350 --~~~~G~~g~~~d~vll~~fG~G~t~~~~ll~~~~ 383 (387)
T 3oit_A 350 --RKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATS 383 (387)
T ss_dssp ------------CCEEEEEEEETTTEEEEEEEEECC
T ss_pred --hhccCCCCCCCCEEEEEEecccceeeeeeeEecc
Confidence 46677 89999999999999999999876
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=339.57 Aligned_cols=304 Identities=17% Similarity=0.251 Sum_probs=233.6
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhc-C-C-C---------hhhh--hhhhcCeEEecCCCC----------------
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHD-G-A-S---------KGKY--TIGLGQECMAFCSEV---------------- 50 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~-g-~-~---------~~k~--~~Gig~r~~av~~~~---------------- 50 (465)
|.++++|.+++.|+|+.+++|+++++.. . . + .+|+ ++||.+|+++ .++
T Consensus 9 m~~~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~--~~~~~~~~~p~~~~~~~~~ 86 (387)
T 3a5r_A 9 MKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLH--VTEEILKENPNIAAYEATS 86 (387)
T ss_dssp --CCEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECS--CCHHHHHHCHHHHSSSSSC
T ss_pred cCCCcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEe--cChhhhccCcccccccCCC
Confidence 3345899999999999999999999875 2 2 1 2355 5899999865 333
Q ss_pred ---------CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCce-eEeecCcChhH
Q 012353 51 ---------EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVDSTNACYGG 120 (465)
Q Consensus 51 ---------Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~-~~di~~aC~gg 120 (465)
++..+|+++|++++|+++|+++++||.||++|+++ +..|+++.+|++.||+ ...+. +++++++|+|+
T Consensus 87 ~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~~v~~aC~s~ 163 (387)
T 3a5r_A 87 LNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCLAG-VDMPGADYQLTKLLDL--DPSVKRFMFYHLGCYAG 163 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSC-CEESCHHHHHHHHTTC--CTTCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCC-CCCCcHHHHHHHHcCc--CCCcceeeeEccccHHH
Confidence 68899999999999999999999999999999987 5689999999999998 44454 99999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEEecccc--ccCCC-----C---CcccccceeeeeecCCCCccccc---cccccccc
Q 012353 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAV--YAEGP-----A---RPTGGAAAVVMLVGPDAPVAFES---KLRGSHMS 187 (465)
Q Consensus 121 ~~AL~~A~~~l~sg~~~~~~aLVVasD~~~--y~~~~-----~---~~t~GdGA~A~Ll~~~~~~~~~~---~~~~~~~~ 187 (465)
+.||.+|..+|++|.. ++||||++|..+ +.++. . ..+|||||+|+||++++...+.. .+.+..
T Consensus 164 ~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~-- 239 (387)
T 3a5r_A 164 GTVLRLAKDIAENNKG--ARVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFELVSTA-- 239 (387)
T ss_dssp HHHHHHHHHHHHHSTT--CEEEEEEEECCTTTCCCCCSSCCSSTTHHHHBCCEEEEEEEESSCCTTTCCCCEEEEEEE--
T ss_pred HHHHHHHHHHHHhCCC--CEEEEEEEeccchhhcCCCccchhhccccceeccceeEEEEecCCCccccCCceEEEeee--
Confidence 9999999999999965 999999999873 22221 1 24799999999999865311100 011110
Q ss_pred CcccccccCCCCC----------CcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC-CCCCceeeccCCchHHHHH
Q 012353 188 HAYDFYKPNLASE----------YPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS-LSNADYFVFHSPYNKLVQK 256 (465)
Q Consensus 188 ~~~df~~p~~~~~----------~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~did~~~~H~p~~km~~~ 256 (465)
....|..... +..+ ++..++...+.+.+++++++++. |++ ++|| +|++||++.++++.
T Consensus 240 ---~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~------gl~d~~di-~~v~Hq~~~~i~~~ 308 (387)
T 3a5r_A 240 ---QTIVPESHGAIEGHLLESGLSFHL-YKTVPTLISNNIKTCLSDAFTPL------NISDWNSL-FWIAHPGGPAILDQ 308 (387)
T ss_dssp ---EEECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHHGGG------TCCCGGGS-EEEECCSCHHHHHH
T ss_pred ---EEEeCCChHhcCceEcCCCeEEEe-cchHHHHHHHHHHHHHHHHHHhc------CCCChhhe-eEEECCCCHHHHHH
Confidence 0112221110 0112 45555666777888888877765 676 7888 89999999999999
Q ss_pred HHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHH
Q 012353 257 SFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAAL 336 (465)
Q Consensus 257 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L 336 (465)
+.++| +++.++.+.. ..++ +++|||++||+|++|
T Consensus 309 ~~~~l------------------------gl~~ek~~~s------~~~l----------------~~~GNtssAsi~~~L 342 (387)
T 3a5r_A 309 VTAKV------------------------GLEKEKLKVT------RQVL----------------KDYGNMSSATVFFIM 342 (387)
T ss_dssp HHHHH------------------------TCCGGGGHHH------HHHH----------------HHHCBCGGGHHHHHH
T ss_pred HHHHc------------------------CCChHHhHHH------HHHH----------------HhcCCcchhHHHHHH
Confidence 99888 7887765321 0124 799999999999999
Q ss_pred HHHHHhcCCCCCC--------CEEEEEEeccchheeeeEEEEeC
Q 012353 337 ASLIHNKHSELDG--------KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 337 ~~ll~~~~~~~~G--------~rill~syGsG~~~~~~~~~~~~ 372 (465)
..++++ ++ ++| ++|+|++||+|++|++++++|.+
T Consensus 343 ~~~~~~-g~-~~G~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 384 (387)
T 3a5r_A 343 DEMRKK-SL-ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384 (387)
T ss_dssp HHHHHH-HH-HTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred HHHHHh-cc-ccCCCCCCCCcceEEEEEecCcceeeehhheecc
Confidence 999987 55 566 99999999999999999999986
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=330.82 Aligned_cols=305 Identities=14% Similarity=0.168 Sum_probs=233.2
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcC--C--C------hhhh--hhhhcCeEEecCCCC--------------------
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDG--A--S------KGKY--TIGLGQECMAFCSEV-------------------- 50 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g--~--~------~~k~--~~Gig~r~~av~~~~-------------------- 50 (465)
++++|.++++|+|+.+++++++++..+ . + .+++ ++||++|+++ .++
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLV--RDYTKPENSIKFRHLETITDVNN 89 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCS--SCTTSGGGCGGGGGGCCHHHHHH
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceee--cCccccccccccCChHHHHHHHH
Confidence 569999999999999999999998753 2 1 1334 4799988865 344
Q ss_pred ---CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHH
Q 012353 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFN 126 (465)
Q Consensus 51 ---Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~ 126 (465)
++..+|+++|++++|+++|+++++||.||++|+++ +..|+++.+|+..||+ ...+.++++. ++|+|++.||.+
T Consensus 90 ~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCss~~~al~~ 166 (374)
T 2h84_A 90 QFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTG-IIIPDVNFKLIDLLGL--NKDVERVSLNLMGCLAGLSSLRT 166 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCC-CCCCcHHHHHHHHcCc--CCCCceEEecCCcCHHHHHHHHH
Confidence 77899999999999999999999999999999987 5689999999999998 4458999997 899999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccccc-c-CCCCC------cccccceeeeeecCCCCc---c-cccccccccc-cCcccc-
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSAVY-A-EGPAR------PTGGAAAVVMLVGPDAPV---A-FESKLRGSHM-SHAYDF- 192 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~~y-~-~~~~~------~t~GdGA~A~Ll~~~~~~---~-~~~~~~~~~~-~~~~df- 192 (465)
|..+|++|.. ++||||++|..+. . ++.++ .+|||||+|+||++.+.. . +.....++.. .+..+.
T Consensus 167 A~~~i~~g~~--~~vLv~g~e~~s~~~~~~~dr~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 244 (374)
T 2h84_A 167 AASLAKASPR--NRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAM 244 (374)
T ss_dssp HHHHHTTCTT--CEEEEEEEECCGGGCCCSSSHHHHHHHHHBCCEEEEEEEESSCCTTCCCCEEEEEEEEEECSSCTTSE
T ss_pred HHHHHHcCCC--CEEEEEEEEecchhhcCCCCHHHHhhhhhhccCcEEEEEecCCCcccCCceeEEeeeeEEeCCCcccc
Confidence 9999999966 9999999998743 2 33332 579999999999986531 0 1110111110 000000
Q ss_pred -cccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCC------CCCCCCceeeccCCchHHHHHHHHHhhhhh
Q 012353 193 -YKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ------FSLSNADYFVFHSPYNKLVQKSFARLLFND 265 (465)
Q Consensus 193 -~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~------~~~~did~~~~H~p~~km~~~~~~~L~~~~ 265 (465)
|.+.. ..+....++.......+.+.++++.++++. | ++++|||+| +||++.++++.+.++|
T Consensus 245 ~~~~~~-~g~~~~~~~~v~~~~~~~~~~~i~~~L~~a------g~~~~~~l~~~did~~-~H~~~~~i~d~~~~~l---- 312 (374)
T 2h84_A 245 VWDLEK-EGWNLGLDASIPIVIGSGIEAFVDTLLDKA------KLQTSTAISAKDCEFL-IHTGGKSILMNIENSL---- 312 (374)
T ss_dssp EEEEET-TEEEEEECTTHHHHHHHHHHHHHHHHHHHH------TTTSCSCCCSSSSEEE-ECCCCHHHHHHHHHHT----
T ss_pred eeEEec-CcEEEEeCchHHHHHHHHHHHHHHHHHHhc------CCccccCCChhhcCEe-ECCCCHHHHHHHHHHc----
Confidence 11110 000111334444555577777888887776 7 899999999 9999999999998887
Q ss_pred hcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCC
Q 012353 266 FMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHS 345 (465)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~ 345 (465)
|++.++...+ ..++ +++||+++||+|++|.+++++ ++
T Consensus 313 --------------------gl~~~k~~~s------~~~~----------------~~~Gnt~sasi~~~L~~~~~~-~~ 349 (374)
T 2h84_A 313 --------------------GIDPKQTKNT------WDVY----------------HAYGNMSSASVIFVMDHARKS-KS 349 (374)
T ss_dssp --------------------TCCGGGGHHH------HHHH----------------HHHCBCTTHHHHHHHHHHHTC-SC
T ss_pred --------------------CCCHHHHHHH------HHHH----------------HHhCCchhhHHHHHHHHHHhh-cC
Confidence 7777654310 1123 799999999999999999988 55
Q ss_pred CCCCCEEEEEEeccchheeeeEEEEe
Q 012353 346 ELDGKRVVLFSYGSGLTATMFSLKLS 371 (465)
Q Consensus 346 ~~~G~rill~syGsG~~~~~~~~~~~ 371 (465)
+|++|++++||+|++|++++++|.
T Consensus 350 --~Gd~vll~~~G~G~t~~~~ll~~~ 373 (374)
T 2h84_A 350 --LPTYSISLAFGPGLAFEGCFLKNV 373 (374)
T ss_dssp --CCSEEEEEEEETTTEEEEEEEEEC
T ss_pred --CCCeEEEEEeccchhhhhhhheec
Confidence 899999999999999999999985
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=332.79 Aligned_cols=308 Identities=15% Similarity=0.096 Sum_probs=231.9
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcC----CCh--hh---h--hhhhcCeEEecCCC---------------------
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDG----ASK--GK---Y--TIGLGQECMAFCSE--------------------- 49 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g----~~~--~k---~--~~Gig~r~~av~~~--------------------- 49 (465)
+|.+.|.+|++++|++.++|+++.++.+ .++ .+ + ++||.+|++.++.+
T Consensus 24 ~m~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (413)
T 3v7i_A 24 AMAAYLCAPAVIHGEHSVETREIVEEVRGRHPHAPWAPRIDGIAASTGIESRGWMLPLEAAVAPGGGGDLGAAREALVRD 103 (413)
T ss_dssp CCCEEEECCEEEECSEEEEHHHHHHHHHHHCSSCSSGGGHHHHHHHHTCSEEEESSCHHHHHSCCCCCCCHHHHHHC---
T ss_pred CCCeEEEeeEeeCCCcccCHHHHHHHHHHhcccchhHHHHHHHHHhCCcCeeeeecCHHHhccccccccccccccccccc
Confidence 4679999999999999999999887652 111 22 2 47999999876521
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHH
Q 012353 50 ------------------------------VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI 99 (465)
Q Consensus 50 ------------------------------~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~ 99 (465)
.+++.+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|+.+
T Consensus 104 ~~~n~~l~~~~~~~e~i~~rtgi~~R~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~li~~t~t~-~~~P~~a~~v~~~ 182 (413)
T 3v7i_A 104 GFTEQDANRAIAALKAVPASQTVQERTAPAWEAVQAYGERAARGALQIAGLDVADVDCLITSNSTT-PALPGLDVALANR 182 (413)
T ss_dssp ---CHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECCSS-CCSSCHHHHHHHH
T ss_pred ccchhhhhhhcCcccceecCCCHHHhCcccccCHHHHHHHHHHHHHHHhCcCHHHCCEEEEEccCC-CCcCHHHHHHHHH
Confidence 135678999999999999999999999999999998 5689999999999
Q ss_pred hcccCCCCceeEee-cCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC--------Ccccccceeeeee
Q 012353 100 FEKFGNTDIEGVDS-TNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA--------RPTGGAAAVVMLV 169 (465)
Q Consensus 100 LGl~g~~~~~~~di-~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~--------~~t~GdGA~A~Ll 169 (465)
||+ .+++.++++ +++|+||+.||.+|..+|++|.. ++||||++|.++. .++.+ ..+|||||+|+||
T Consensus 183 LGl--~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~--~~vLvvg~E~~S~~~~~~d~~~~~lv~~~LFGDGAaAvvl 258 (413)
T 3v7i_A 183 LPL--RGDTMLLPATQWACVAGTRSLALAADLVAADPD--RVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVV 258 (413)
T ss_dssp TTC--CTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTT--CEEEEEEEECGGGGCCSSCCSTTHHHHHHHBCCEEEEEEE
T ss_pred hCC--CCCceEEEeeCCccHHHHHHHHHHHHHHhcCCC--CEEEEEEEeccccccCccccchhhhhcceeeccccEEEEE
Confidence 998 566899999 89999999999999999999954 9999999999842 22222 3579999999999
Q ss_pred cCCCC--cccccccccccccCccc-----ccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012353 170 GPDAP--VAFESKLRGSHMSHAYD-----FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242 (465)
Q Consensus 170 ~~~~~--~~~~~~~~~~~~~~~~d-----f~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did 242 (465)
++++. ..+. +.++......+ -|.......+..++|+. . .+++.+.+++++++++......++++ ||
T Consensus 259 ~~~~~~~~~~~--l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~v-~-~~v~~~~~~i~~~L~~~~~~~~~gl~---id 331 (413)
T 3v7i_A 259 TGRPRPESVLR--LDAAWHHTLPGTRDLHRLETRADGTHFVMDRRG-P-RAVQETVTAMWEWLRVRYEDDPSSWH---PD 331 (413)
T ss_dssp ESSCCTTEEEE--EEEEEEEECTTCTTSEEEEEETTEEEEEECTTH-H-HHHHHHHHHHHHHHHHHTSSSCTTCC---CC
T ss_pred EecCCCCCCEE--EEccccEEeCCCccccCccccCCceEEEECcHH-H-HHHHHHHHHHHHHHhhccccccCCCc---ee
Confidence 98763 1121 11221110000 01100000012356652 2 34556777777777621100123565 99
Q ss_pred eeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCC--CCCCccccchhHHHHHHhhhhhhhhhccCCCccc
Q 012353 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFST--LSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLI 320 (465)
Q Consensus 243 ~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~ 320 (465)
+|++||++.++++.+.++| + ++.++.. ..+.++
T Consensus 332 ~~v~Hq~~~~il~~v~~~L------------------------g~~l~~ek~~------~s~~~l--------------- 366 (413)
T 3v7i_A 332 VLLAHPGGTRVLEYMEQTM------------------------PDEWPSGLLS------YSRDSY--------------- 366 (413)
T ss_dssp EEEEECSSHHHHHHHHHHS------------------------CSSCCSCSTH------HHHHHH---------------
T ss_pred EEEECCCChHHHHHHHHHh------------------------CCCCCHHHhh------ccceEe---------------
Confidence 9999999999999999988 7 8887641 112345
Q ss_pred ccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEE
Q 012353 321 PKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370 (465)
Q Consensus 321 ~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~ 370 (465)
+ +|||++||+|++|..++ + +++++|++|+|++||+|++|++++++|
T Consensus 367 -~-~GNtssAsi~~~L~~~~-~-~~~~~Gd~vll~~fG~Glt~~~~ll~w 412 (413)
T 3v7i_A 367 -T-SGNRGGAAVFDILRRAH-D-AGQKTGSRAVLYAAAPGLTATALEGEW 412 (413)
T ss_dssp -T-TCBCGGGHHHHHHHHHH-H-HCCCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred -c-eeChHHHHHHHHHHHHH-h-CCCCCCCEEEEEEECHHHhHhhhheEe
Confidence 8 99999999999999999 4 578899999999999999999999998
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=332.17 Aligned_cols=305 Identities=17% Similarity=0.223 Sum_probs=233.7
Q ss_pred CceeEEeEEEEecCCceechHHHHHhcCC---C---------hhhh--hhhhcCeEEecCC---------------CC--
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHDGA---S---------KGKY--TIGLGQECMAFCS---------------EV-- 50 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~---~---------~~k~--~~Gig~r~~av~~---------------~~-- 50 (465)
+++++|.++++|+|+.+|+|+++++..+. + .+|+ ++||.+|+++.++ +.
T Consensus 36 ~~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~~~ 115 (413)
T 1xes_A 36 DGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLD 115 (413)
T ss_dssp CSCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCCHH
T ss_pred CCCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCCHH
Confidence 45789999999999999999999987521 1 1344 4799999865322 00
Q ss_pred -------CCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeecCcChhHHH
Q 012353 51 -------EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTA 122 (465)
Q Consensus 51 -------Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~~aC~gg~~ 122 (465)
++..+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|+..||+ ...+ ++++++++|+|++.
T Consensus 116 ~r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~~v~~aCas~~~ 192 (413)
T 1xes_A 116 ARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTT-PDLPGADFEVAKLLGL--HPSVKRVGVFQHGCFAGGT 192 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESCC-CEESCHHHHHHHHHTC--CTTCEEEEEESCCTTHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CccchHHHHHHHHcCc--CCccchhceecCccHHHHH
Confidence 47899999999999999999999999999999998 5689999999999998 4445 49999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEEecccc--ccCCCC--------CcccccceeeeeecCCCCccccc---ccccccccCc
Q 012353 123 ALFNCVNWVESSSWDGRYGLVVCTDSAV--YAEGPA--------RPTGGAAAVVMLVGPDAPVAFES---KLRGSHMSHA 189 (465)
Q Consensus 123 AL~~A~~~l~sg~~~~~~aLVVasD~~~--y~~~~~--------~~t~GdGA~A~Ll~~~~~~~~~~---~~~~~~~~~~ 189 (465)
||.+|..+|++|.. ++||||++|..+ +.++.. ..+|||||+|+||++.+...+.. .+.+..
T Consensus 193 AL~~A~~~i~~G~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~---- 266 (413)
T 1xes_A 193 VLRMAKDLAENNRG--ARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTA---- 266 (413)
T ss_dssp HHHHHHHHHHTSTT--CCEEEEEEECTTTTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTSCCSEEEEEEE----
T ss_pred HHHHHHHHHHcCCC--CEEEEEEehhhhhhhcCCCccchhhcccceeEecccEEEEEecCCCccccCCceEEEeee----
Confidence 99999999999965 999999999874 322221 24799999999999865311100 011110
Q ss_pred ccccccCCCCC----------CcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC-CCCCceeeccCCchHHHHHHH
Q 012353 190 YDFYKPNLASE----------YPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS-LSNADYFVFHSPYNKLVQKSF 258 (465)
Q Consensus 190 ~df~~p~~~~~----------~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~did~~~~H~p~~km~~~~~ 258 (465)
....|..... +..+ ++..+..+.+.+.+++++++++. |++ ++|+ +|++||++.++++.+.
T Consensus 267 -~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~------gl~d~~di-~~v~Hq~~~~i~~~~~ 337 (413)
T 1xes_A 267 -QTVVPNSEGAIGGKVREVGLTFQL-KGAVPDLISANIENCMVEAFSQF------KISDWNKL-FWVVHPGGRAILDRVE 337 (413)
T ss_dssp -EEECTTCTTTEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHHGGG------TCCCGGGS-EEEECCSCHHHHHHHH
T ss_pred -eEEcCCChhhcCcEEecCceEEEe-cccHHHHHHHHHHHHHHHHHHhc------CCCCccce-eEEECCCCHHHHHHHH
Confidence 0112221100 0112 45555666677888887777765 676 7788 7999999999999999
Q ss_pred HHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHH
Q 012353 259 ARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALAS 338 (465)
Q Consensus 259 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ 338 (465)
++| +++.++.+.. ..++ +++|||++||+|++|..
T Consensus 338 ~~L------------------------gl~~ek~~~s------~~~l----------------~~~GNtssAsi~~~L~~ 371 (413)
T 1xes_A 338 AKL------------------------NLDPTKLIPT------RHVM----------------SEYGNMSSACVHFILDQ 371 (413)
T ss_dssp HHT------------------------TCCTTTTHHH------HHHH----------------HHHCBCGGGHHHHHHHH
T ss_pred HHc------------------------CCChHHhHHH------HHHH----------------HhcCcCchhhHHHHHHH
Confidence 888 8888765421 1134 79999999999999999
Q ss_pred HHHhcCCCCCC--------CEEEEEEeccchheeeeEEEEeC
Q 012353 339 LIHNKHSELDG--------KRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 339 ll~~~~~~~~G--------~rill~syGsG~~~~~~~~~~~~ 372 (465)
++++ ++ ++| ++|+|++||+|++|++++++|.+
T Consensus 372 ~~~~-g~-~~G~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 411 (413)
T 1xes_A 372 TRKA-SL-QNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVP 411 (413)
T ss_dssp HHHH-HH-HTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred HHHh-cc-ccCCCCCCCCcceEEEEEecCCcEEeEEEEEecc
Confidence 9987 54 556 99999999999999999999986
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=358.21 Aligned_cols=310 Identities=18% Similarity=0.179 Sum_probs=233.8
Q ss_pred CceeEEeEEEEecCCceechHHHHHh---cCCChhh---------h--hhhhcCeEEecCCCCC----------------
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAH---DGASKGK---------Y--TIGLGQECMAFCSEVE---------------- 51 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~---~g~~~~k---------~--~~Gig~r~~av~~~~E---------------- 51 (465)
.++++|.++|+|+|+.+|+|+|+++. .+.++.| + ++||.+|++. .++|
T Consensus 601 ~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~--~~~~~~~~~~~~~~~~~~~~ 678 (979)
T 3tsy_A 601 KGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIH--LTEEMLEEHPNIGAYMAPSL 678 (979)
T ss_dssp CSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECS--CCHHHHHHCHHHHSSSSCCH
T ss_pred cCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEe--cChhhhhcCcccccccCCCH
Confidence 45799999999999999999999998 5666644 4 4789888854 4444
Q ss_pred ---------CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHH
Q 012353 52 ---------DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122 (465)
Q Consensus 52 ---------d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~ 122 (465)
+..+||++|+++||+++|+++++||.||++|++ ++..|++++.|+++||+. ...+.++|+++||+||+.
T Consensus 679 ~~r~~~~~~~~~~la~~Aa~~AL~~agl~~~dId~ii~~t~~-~~~~p~~a~~v~~~lGl~-~~~~~~~~v~~aCsg~~~ 756 (979)
T 3tsy_A 679 NIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTS-GVEMPGADYKLANLLGLE-PSVRRVMLYHQGCYAGGT 756 (979)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESS-CCCSSCHHHHHHHHHTCC-TTCEEEEEESCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHcCCC-cccEEEeeeccccHhHHH
Confidence 478899999999999999999999999999955 567899999999999982 123679999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEEeccccccC--CCC--------CcccccceeeeeecCCCCcccccccccccccCcccc
Q 012353 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAE--GPA--------RPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDF 192 (465)
Q Consensus 123 AL~~A~~~l~sg~~~~~~aLVVasD~~~y~~--~~~--------~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df 192 (465)
||.+|..+|++|.+ ++||||++|...... ... ..+|||||+|+||++.+...+..............+
T Consensus 757 Al~~A~~~i~sG~~--~~vLvvg~e~~~~~~~~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~ 834 (979)
T 3tsy_A 757 VLRTAKDLAENNAG--ARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFI 834 (979)
T ss_dssp HHHHHHHHHHTSTT--CEEEEEEEECTTTTCCCCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHhCCC--CEEEEEEEEecchheeCCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEe
Confidence 99999999999966 999999999874422 111 146899999999998653211100000000000001
Q ss_pred cccCC-------CCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhh
Q 012353 193 YKPNL-------ASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFND 265 (465)
Q Consensus 193 ~~p~~-------~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~ 265 (465)
..+.. ...+..+.++.......+.+.++++..+++. |++++|||+|++||++.++++++.++|
T Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~al~~a------gl~~~did~~~~Hq~~~~i~~~~~~~l---- 904 (979)
T 3tsy_A 835 PNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPL------GISDWNSLFWIAHPGGPAILDAVEAKL---- 904 (979)
T ss_dssp TTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHGGG------TCCCGGGSEEEECCSCHHHHHHHHHHH----
T ss_pred cCchhheEEEEecCceEEEEchHHHHHHHHHHHHHHHHHHhhc------CCCCcccceEEECCCChHHHHHHHHHc----
Confidence 11110 0011123344455555666777777766655 899999999999999999999999998
Q ss_pred hcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCC
Q 012353 266 FMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHS 345 (465)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~ 345 (465)
+++.++.+.+ +.++ +++|||++||+|++|+++++.
T Consensus 905 --------------------gl~~~k~~~~------~~~l----------------~~~GNtssasi~~~L~~~~~~--- 939 (979)
T 3tsy_A 905 --------------------NLDKKKLEAT------RHVL----------------SEYGNMSSACVLFILDEMRKK--- 939 (979)
T ss_dssp --------------------TCCTTTTHHH------HHHH----------------HHHCBCTTHHHHHHHHHHHHH---
T ss_pred --------------------CCChHHHHHH------HHHH----------------HHcCCcchhhHHHHHHHHHhh---
Confidence 7888765421 1124 899999999999999998874
Q ss_pred CCCCCEE---------EEEEeccchheeeeEEEEeC
Q 012353 346 ELDGKRV---------VLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 346 ~~~G~ri---------ll~syGsG~~~~~~~~~~~~ 372 (465)
+++|++| +|++||+|++|++++++|.+
T Consensus 940 ~~~G~~v~~g~~~~~~ll~~~G~G~t~~~~~l~~~~ 975 (979)
T 3tsy_A 940 SLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIP 975 (979)
T ss_dssp HHHTTCSBTTTTCSEEEEEEECGGGEEEEEEEECCB
T ss_pred hcccccccCCCCcceeEEEEeCCchHHHHHHHHhcc
Confidence 3456555 99999999999999999976
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=202.79 Aligned_cols=283 Identities=11% Similarity=0.051 Sum_probs=181.1
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
++.|.+.+..++ ..|.+.-.+...+++ ....|++. .++...+|+++|+++||+++|++++|||.||++
T Consensus 14 ~~~i~~~~~~~g-----~~E~~gpl~~~fd~~~~d~~fG~~t-----~e~a~sdLa~~Aa~~AL~~AGi~~~DID~II~g 83 (347)
T 3lma_A 14 PLFVNSSGTAVG-----PKEKEGPLGHLFDKSYDEMHCNQKN-----WEMAERKLMEDAVQSALSKQNLKKEDIDIFLAG 83 (347)
T ss_dssp CCEEEEEEEEEC-----HHHHHSTTGGGSSEECSSTTTTSSS-----HHHHHHHHHHHHHHHHHHTTTCCGGGCSEEEEE
T ss_pred CCEEEEEeeeeC-----chhhcCCchhhchhhhcccccCCcC-----ccHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 466777776655 445444333333333 13345432 256778999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-C---CC--
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-E---GP-- 155 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~---~~-- 155 (465)
|.++ +. ..+.++++.||+ ++||+.++|+|++.||.+|..+|++|.+ ++||||++|..+.. + .+
T Consensus 84 t~t~-q~--~~A~~va~~Lgi------pafdV~~ACsg~~~AL~~Aa~~I~sG~~--~~VLVVGaE~~S~aerq~r~p~e 152 (347)
T 3lma_A 84 DLLN-QN--VTANYVARHLKI------PFLCLFGACSTSMESIAISSALIDGGFA--KRALAATSSHNATAERQFRYPTE 152 (347)
T ss_dssp ESSS-SS--TTHHHHHHHHCC------CEEEBCCSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTTCCC-----
T ss_pred eCCC-ch--hHHHHHHHHhCC------CEEEecChhHHHHHHHHHHHHHHhcCCC--CEEEEEEeccccchhhhccCcch
Confidence 9998 33 378899999963 5899999999999999999999999976 99999999987421 1 11
Q ss_pred -------CCcccccceeeeeecCCCCcccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHh
Q 012353 156 -------ARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKY 228 (465)
Q Consensus 156 -------~~~t~GdGA~A~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~ 228 (465)
....++|||+|+||++.+.- +.+.+.-.-.+.|+ +..-|...|. .-..+..+++..++++.
T Consensus 153 ~g~q~p~ta~~t~dGAGA~VL~~~g~~---p~I~~~t~Gkvvd~-----g~~d~~nmg~----amaPaA~~ti~~~l~d~ 220 (347)
T 3lma_A 153 YGGQKPGTATSTVTGSGAVVLSQQPGG---IKITSATVGRVIDL-----GITDSQDMGS----AMAPAAADTIKQHLEDL 220 (347)
T ss_dssp -----------CCCEEEEEEEESSCCS---EEEEEEECCCCBCC-----SCCCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred hcccCCchhcEEccceeEEEEEecCCC---Cceeeeeeeeeecc-----CCCCCCCccc----cchHHHHHHHHHHHHHh
Confidence 12346899999999976531 11111111122221 1110111121 00111112334444554
Q ss_pred hhhhcCCCCCCCCceee---ccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhh
Q 012353 229 EKLEGKQFSLSNADYFV---FHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQL 305 (465)
Q Consensus 229 ~~~~~~~~~~~did~~~---~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~ 305 (465)
|++++|+|+|+ +|+.+.+|++++++++ |++.++.|.|=- +
T Consensus 221 ------g~~~~d~D~ivtgdL~q~g~~il~~l~~~~------------------------g~~~~~~~~dcg-------~ 263 (347)
T 3lma_A 221 ------GRTPDDYDLILTGDLSGVGSPILKDLLKEE------------------------GINVGTKHNDCG-------L 263 (347)
T ss_dssp ------TCCGGGCSEEEEESCHHHHHHHHHHHHHHT------------------------TCCCGGGEEEGG-------G
T ss_pred ------CCCHHHcCEEecCChHHHHHHHHHHHHHHc------------------------CCChhHCccccc-------e
Confidence 89999999999 8899999999999888 777777765511 1
Q ss_pred hhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchhee
Q 012353 306 AKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTAT 364 (465)
Q Consensus 306 ~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~ 364 (465)
..|. .... -.-|-.|++.....|...|-+.-+....+||++++.|++++-.
T Consensus 264 --~iy~----~~~~--~~~ggsg~~csa~v~~~~~~~~~~~g~~~ril~~~tGalls~~ 314 (347)
T 3lma_A 264 --MIYT----PDQQ--VFAGGSGCACSAVVTFAHIFKEIEAGRLNRVLVVATGALLSPT 314 (347)
T ss_dssp --TSSC----C-----------CCCCHHHHHHHTHHHHHHTTSCSEEEEEEEEECCCHH
T ss_pred --EEec----CCCc--ccCCCCccccHHHHHHHHHHHHHhcCcccEEEEEecccccCcc
Confidence 1111 0000 1346777788888887765541111356899999999998643
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=164.07 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 48 SEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 48 ~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.++++..+|+++|++++|+++|+++++||.|++++.++....|.++..|+..||+ ..++++++++.+|++++.||..|
T Consensus 26 ~~~~~~~~L~~~A~~~AL~~agl~~~dId~vi~g~~~~~~~~~~~a~~v~~~lGl--~~~~p~~~v~~aCss~~~al~~A 103 (396)
T 4dd5_A 26 FKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGI--PVEKPAMTINIVCGSGLRSVSMA 103 (396)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCCCCCchHHHHHHHHcCC--CCCceEEEeccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999999888889999999999998 55789999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~ 149 (465)
..+|++|.+ +.|||+++|..
T Consensus 104 ~~~I~~G~~--~~vLv~g~e~~ 123 (396)
T 4dd5_A 104 SQLIALGDA--DIMLVGGAENM 123 (396)
T ss_dssp HHHHHHTSC--SEEEEEEEEES
T ss_pred HHHHhcCCC--CEEEEEEEecc
Confidence 999999976 99999999875
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=165.87 Aligned_cols=98 Identities=6% Similarity=0.105 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 48 SEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 48 ~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
..+++..+|+++|++++|+++|+++++||.|++++.++....+.++..++..||+ ..++++++++.+|++++.||.+|
T Consensus 24 ~~~~~~~~L~~~A~~~Al~~agl~~~~Id~v~~g~~~~~~~~~~~a~~i~~~lGl--~~~~p~~~v~~aCss~~~al~~A 101 (394)
T 3ss6_A 24 LKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDEANTARTAALAAGF--PDTVTGYTIQRQCSSGMQAIMSA 101 (394)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSCCGGGCSHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCHhHCCEEEEEEccCCCccchHHHHHHHHcCC--CCCceEEEecCcchHHHHHHHHH
Confidence 3578899999999999999999999999999999999877778899999999998 55789999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~ 149 (465)
..+|++|.+ +.|||+++|..
T Consensus 102 ~~~I~~G~~--~~vlv~G~e~~ 121 (394)
T 3ss6_A 102 AMQIQLGVS--EVVVAGGVEAM 121 (394)
T ss_dssp HHHHHHTSC--SEEEEEEEEEC
T ss_pred HHHHhCCCC--CEEEEEEEhhc
Confidence 999999977 99999999875
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=163.67 Aligned_cols=97 Identities=8% Similarity=0.103 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+++..+|+++|++++|+++|+++++||.|++++.++....+.++..++..||+ ..+++++++..+|++++.||..|.
T Consensus 25 ~~~~~~~L~~~a~~~Al~~agi~~~~Id~v~~g~~~~~~~~~~~a~~~~~~lGl--~~~~p~~~v~~~Css~~~al~~A~ 102 (395)
T 4e1l_A 25 KNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLGQNVARQIAINAGI--PNSVPSYTVNKLCGSGLKSVQLAA 102 (395)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECCCCSSTTCCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcchHHHHHHHHcCC--CCCceEEEccccchHHHHHHHHHH
Confidence 578899999999999999999999999999999999887788999999999998 557899999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~ 149 (465)
.+|++|.+ +.|||+++|..
T Consensus 103 ~~I~~G~~--~~vlv~g~e~~ 121 (395)
T 4e1l_A 103 QSITSGEN--DVVIAGGTENM 121 (395)
T ss_dssp HHHHTTSC--SEEEEEEEEET
T ss_pred HHHhCCCC--CEEEEEEEecc
Confidence 99999977 99999999865
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-16 Score=160.17 Aligned_cols=298 Identities=12% Similarity=0.121 Sum_probs=182.9
Q ss_pred CCceeEEeEEEEecCCceechHHHHHhc--CCC---------hhhhhhhhcCeEEecC------CC-----CCCHHHHHH
Q 012353 1 MAKNVGILAMDIYFPPTCVQQEALEAHD--GAS---------KGKYTIGLGQECMAFC------SE-----VEDVISMSL 58 (465)
Q Consensus 1 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---------~~k~~~Gig~r~~av~------~~-----~Ed~~~la~ 58 (465)
|.++|-|.+++..+|.-. +.+++.+.. |.+ +..+...++- .+.|. ++ -.....|++
T Consensus 1 M~~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~-~~~fd~~~~~i~~~~~~~~d~~~~l~l 78 (424)
T 1tqy_A 1 MKRRVVITGVGVRAPGGN-GTRQFWELLTSGRTATRRISFFDPSPYRSQVAA-EADFDPVAEGFGPRELDRMDRASQFAV 78 (424)
T ss_dssp --CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEE-CCCCCHHHHTCCHHHHHHSCHHHHHHH
T ss_pred CCCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCceeeCCCcccccCCcceeE-EeccCHhhcCCCHHHHHhcCHHHHHHH
Confidence 556899999999999885 777765543 322 1111000000 00010 00 112468999
Q ss_pred HHHHHHHHHCCCCcCCcc----EEEEEeecCCC---------------------------CcccH-HH----HHHHHhcc
Q 012353 59 TAVTNLLEKYKIDPKQIG----RLEVGSETVID---------------------------KSKSI-KT----FLMQIFEK 102 (465)
Q Consensus 59 ~Aa~~aL~~agi~~~~Id----~li~~T~s~~~---------------------------~~ps~-a~----~l~~~LGl 102 (465)
+|++++|+++|+++++|| .|+++|.++.. ..|+. +. +|+..||+
T Consensus 79 ~aa~~AL~dAG~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl 158 (424)
T 1tqy_A 79 ACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGA 158 (424)
T ss_dssp HHHHHHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCchhcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCC
Confidence 999999999999999999 68999876532 11222 34 99999997
Q ss_pred cCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc--cc-----------cC------C--------C
Q 012353 103 FGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA--VY-----------AE------G--------P 155 (465)
Q Consensus 103 ~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~--~y-----------~~------~--------~ 155 (465)
. .+++++..+|++++.||..|..+|++|.+ +.|||+++|.. .+ .. . .
T Consensus 159 ---~-gp~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~ 232 (424)
T 1tqy_A 159 ---E-GPVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTR 232 (424)
T ss_dssp ---C-SCEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTC
T ss_pred ---C-CceEeecCcccHHHHHHHHHHHHHHCCCC--CEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCC
Confidence 2 36799999999999999999999999987 99999999974 10 00 0 1
Q ss_pred CCcccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhh
Q 012353 156 ARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE 229 (465)
Q Consensus 156 ~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~ 229 (465)
+...+||||+|+||.+.+.. .+...+.|+... +...... |..+|. ....+++..+++.
T Consensus 233 ~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~-------p~~~g~--------~~~~ai~~al~~a- 296 (424)
T 1tqy_A 233 DGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTG-------LKADGR--------EMAETIRVALDES- 296 (424)
T ss_dssp CCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSC-------CCTTCH--------HHHHHHHHHHHHH-
T ss_pred CceeeecceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCC-------CCCCHH--------HHHHHHHHHHHHc-
Confidence 23568999999999864210 000012222211 1111111 222342 2333444455554
Q ss_pred hhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhh
Q 012353 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPL 309 (465)
Q Consensus 230 ~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~ 309 (465)
+++++|||++..|+.++.+.+.+....+ ...+. ...+
T Consensus 297 -----gl~~~dId~ve~Hgtgt~~gD~~E~~al-~~~f~------------------~~~~------------------- 333 (424)
T 1tqy_A 297 -----RTDATDIDYINAHGSGTRQNDRHETAAY-KRALG------------------EHAR------------------- 333 (424)
T ss_dssp -----TCCGGGCCEEECCCCCCHHHHHHHHHHH-HHHTG------------------GGGG-------------------
T ss_pred -----CCCHHHCCEEEecCccCcCcCHHHHHHH-HHHhc------------------ccCC-------------------
Confidence 7999999999999999987654432221 00000 0000
Q ss_pred hhhccCCCcccccccCccchhhHHHHHHHH---HHhcCCC------------------------CCCCEEEEEEeccchh
Q 012353 310 YDAKVQPSTLIPKQVGNMYTASLYAALASL---IHNKHSE------------------------LDGKRVVLFSYGSGLT 362 (465)
Q Consensus 310 ~~~~~~~s~~~~~~~GN~~taS~~l~L~~l---l~~~~~~------------------------~~G~rill~syGsG~~ 362 (465)
++.-+ .+-..+||+.+|+-.+.|..+ |++ +.+ .+.+++++.|||-|.+
T Consensus 334 ---~~~v~-s~k~~~GH~~~AaG~~~l~~~~l~l~~-~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~sfG~GG~ 408 (424)
T 1tqy_A 334 ---RTPVS-SIKSMVGHSLGAIGSLEIAACVLALEH-GVVPPTANLRTSDPECDLDYVPLEARERKLRSVLTVGSGFGGF 408 (424)
T ss_dssp ---GSCEE-CTHHHHCBCTTTHHHHHHHHHHHHHHH-CEECCBTTCCSBBTTBCSCCCBSSCEECCCSEEEEEEEETTTE
T ss_pred ---CCeee-ccccccccChhhhHHHHHHHHHHHHHc-CCcCCCCCCCCCCCCCCcccCCCcccCCCCCEEEEccccCCce
Confidence 00000 011468999999988777763 333 221 1468899999999888
Q ss_pred eeeeEEEE
Q 012353 363 ATMFSLKL 370 (465)
Q Consensus 363 ~~~~~~~~ 370 (465)
...++++.
T Consensus 409 n~~~vl~~ 416 (424)
T 1tqy_A 409 QSAMVLRD 416 (424)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 88777764
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-15 Score=152.91 Aligned_cols=230 Identities=11% Similarity=0.087 Sum_probs=147.2
Q ss_pred CC-ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhh-hhhhcCeEEe-cCC-------------CCCCHHHHHH
Q 012353 1 MA-KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKY-TIGLGQECMA-FCS-------------EVEDVISMSL 58 (465)
Q Consensus 1 ~~-~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~a-v~~-------------~~Ed~~~la~ 58 (465)
|. +.|.|.+++.++|.- .+.+++.+.. |.+. .++ ..+...+... +.. .-.....|++
T Consensus 1 M~~~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l 79 (413)
T 3o04_A 1 MDKRRVVVTGIGAVTPIG-NDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAI 79 (413)
T ss_dssp CCCCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGTSCHHHHTTSCHHHHHHH
T ss_pred CCCCCEEEEEeEEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhccCHHHHhhCCHHHHHHH
Confidence 44 469999999999987 5777765542 2210 001 0001111000 000 1123567999
Q ss_pred HHHHHHHHHCCCCcCCcc----EEEEEeecC-----------------CCCcc---------cHHHHHHHHhcccCCCCc
Q 012353 59 TAVTNLLEKYKIDPKQIG----RLEVGSETV-----------------IDKSK---------SIKTFLMQIFEKFGNTDI 108 (465)
Q Consensus 59 ~Aa~~aL~~agi~~~~Id----~li~~T~s~-----------------~~~~p---------s~a~~l~~~LGl~g~~~~ 108 (465)
+|++++|+++|+++++|| .|+++|.++ ....| ..+.+|+..||+ . .
T Consensus 80 ~Aa~~AL~dAGl~~~~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl---~-g 155 (413)
T 3o04_A 80 ASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGA---K-G 155 (413)
T ss_dssp HHHHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTC---C-S
T ss_pred HHHHHHHHHcCCChhHcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCC---C-C
Confidence 999999999999999999 999998752 22222 248899999997 2 2
Q ss_pred eeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc---------------c-----------ccCCCCCccccc
Q 012353 109 EGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA---------------V-----------YAEGPARPTGGA 162 (465)
Q Consensus 109 ~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~---------------~-----------y~~~~~~~t~Gd 162 (465)
+++++..+|++++.||..|..+|++|.+ +.|||+++|.. . |.......++||
T Consensus 156 p~~~v~~aCss~~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~g~~~gd 233 (413)
T 3o04_A 156 INSTTVTACATATNSIGDAFKVIERGDA--DAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGE 233 (413)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTTSCCTTBTTCCSBCBBC
T ss_pred cceeecchhHHHHHHHHHHHHHHHcCCC--CEEEEeEEcccCCHHHHHHHHhcccccCCCCCCCCcCCCcCCCCCceEec
Confidence 6889999999999999999999999987 99999999972 0 000112346899
Q ss_pred ceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 012353 163 AAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQF 236 (465)
Q Consensus 163 GA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~ 236 (465)
||+|+||++.+.. .+...+.++... +.+.... |..++ .....+++..+++. |+
T Consensus 234 GAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~-------~~~~~--------~~~~~a~~~al~~a------gl 292 (413)
T 3o04_A 234 GAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITA-------PAPNG--------EGAARAMKMAIDDA------GL 292 (413)
T ss_dssp EEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSS-------CCGGG--------HHHHHHHHHHHHHH------TC
T ss_pred cEEEEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCC-------CCCCH--------HHHHHHHHHHHHHc------CC
Confidence 9999999864210 000012222211 1111111 11222 12334455555554 79
Q ss_pred CCCCCceeeccCCchHHHHHHH
Q 012353 237 SLSNADYFVFHSPYNKLVQKSF 258 (465)
Q Consensus 237 ~~~did~~~~H~p~~km~~~~~ 258 (465)
+++|||++.+|..++.+.+...
T Consensus 293 ~~~dId~ve~HgtgT~~~d~~e 314 (413)
T 3o04_A 293 TPDKVDYINAHGTSTPYNDEYE 314 (413)
T ss_dssp CGGGCCEEECCCCCCHHHHHHH
T ss_pred CHHHcCEEEEeCCcCcccCHHH
Confidence 9999999999999998776543
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=159.83 Aligned_cols=131 Identities=10% Similarity=0.075 Sum_probs=93.4
Q ss_pred cCCceechHHHHHhcCC---Chhhh----hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCC
Q 012353 14 FPPTCVQQEALEAHDGA---SKGKY----TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVI 86 (465)
Q Consensus 14 ~P~~~v~~~~l~~~~g~---~~~k~----~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~ 86 (465)
-|+++++|+++++..+. +..++ ++.++.++. ....+++..+|+++|++++|+++|+++++||.|++++.++.
T Consensus 10 ~P~~~~~n~~~~~~~~~~~~~~v~Ivg~~rt~~g~~~~-~~~~~~~~~~L~~~Aa~~AL~dAgl~~~~id~v~~g~~~~~ 88 (418)
T 2iik_A 10 GVDLGTENLYFQSMAPQASAADVVVVHGRRTAICRAGR-GGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQP 88 (418)
T ss_dssp -----------------CCTTCEEEEEEEECCCEETTT-STTTTCCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECSSSB
T ss_pred CCCccccHHHHHHHhhhccCCCeEEEeeeecCceecCC-CCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCc
Confidence 49999999999987653 32222 234443211 12467899999999999999999999999999999998887
Q ss_pred CCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 87 DKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 87 ~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
...+..+..++..||+ ..+++++++..+|++++.||..|..+|++|.+ +.|||+++|..
T Consensus 89 ~~~~~~a~~~a~~lGl--~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~--d~vLv~G~e~~ 147 (418)
T 2iik_A 89 GAGAIMARIAQFLSDI--PETVPLSTVNRQCSSGLQAVASIAGGIRNGSY--DIGMACGVESM 147 (418)
T ss_dssp GGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEET
T ss_pred cccccHHHHHHHHcCC--CCCceEEEeCCCCHHHHHHHHHHHHHHHCCCC--CEEEEeccccC
Confidence 6566778888899997 45788999999999999999999999999977 99999999864
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=149.94 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=144.5
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhhh-hhhcCeEE---ecCC----------CCCCHHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKYT-IGLGQECM---AFCS----------EVEDVISMSLTAVT 62 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~---av~~----------~~Ed~~~la~~Aa~ 62 (465)
+.|-|.++++.+|--. +.+++.+.. |.+. .++. .++..+.- .|.. .-.....|+++|++
T Consensus 2 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~l~~~aa~ 80 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQ 80 (408)
T ss_dssp CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEEEeEEECCCCC-CHHHHHHHHHcCCCeeeeccccCcccCccceEEEEccChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 5799999999999875 667665432 2211 0110 01100100 0110 01235789999999
Q ss_pred HHHHHCCCCcCCccE----EEEEeecCCCC-------------------------cc-cHHHHHHHHhcccCCCCceeEe
Q 012353 63 NLLEKYKIDPKQIGR----LEVGSETVIDK-------------------------SK-SIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 63 ~aL~~agi~~~~Id~----li~~T~s~~~~-------------------------~p-s~a~~l~~~LGl~g~~~~~~~d 112 (465)
++|+++|+++++||. ++++|.++.+. .+ ..+.+|+..||+ . .++++
T Consensus 81 ~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl---~-gp~~~ 156 (408)
T 1j3n_A 81 LALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGF---T-GPSST 156 (408)
T ss_dssp HHHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---C-SCBCC
T ss_pred HHHHHcCCCccccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCC---C-CceeC
Confidence 999999999999984 77887765321 12 468899999997 2 26789
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc--c----------c-c--------------CCCCCccccccee
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA--V----------Y-A--------------EGPARPTGGAAAV 165 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~--~----------y-~--------------~~~~~~t~GdGA~ 165 (465)
+.++|++++.||..|..+|++|.+ +.|||+++|.. . + . ...+..++||||+
T Consensus 157 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGaa 234 (408)
T 1j3n_A 157 VVTACATGADALGSALRMIQLGEA--DLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAG 234 (408)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEE
T ss_pred ccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeEE
Confidence 999999999999999999999977 99999999963 1 0 1 0112456899999
Q ss_pred eeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012353 166 VMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (465)
Q Consensus 166 A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465)
|+||++.+.. .+...+.|+... +...... |..++. ....+++..+++. |++++
T Consensus 235 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~-------p~~~~~--------~~~~ai~~al~~A------gl~~~ 293 (408)
T 1j3n_A 235 VLVLEAYEHAKKRGARIYAELVGFGRSADAHHITE-------PHPEGK--------GAALAMARALKDA------GIAPE 293 (408)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSC-------CCTTCH--------HHHHHHHHHHHHH------TCCGG
T ss_pred EEEEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCC-------CCCCHH--------HHHHHHHHHHHHc------CCCHH
Confidence 9999764210 000012222211 1111112 222332 2233444444554 79999
Q ss_pred CCceeeccCCchHHHHH
Q 012353 240 NADYFVFHSPYNKLVQK 256 (465)
Q Consensus 240 did~~~~H~p~~km~~~ 256 (465)
|||++.+|+.++++.+.
T Consensus 294 dId~ve~Hgtgt~~gD~ 310 (408)
T 1j3n_A 294 QVGYINAHGTSTPVGDR 310 (408)
T ss_dssp GCCEEECCCCSCHHHHH
T ss_pred HcCEEEEeCCcCcccCH
Confidence 99999999999987444
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-14 Score=148.96 Aligned_cols=227 Identities=13% Similarity=0.120 Sum_probs=146.9
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhh-hhhhcCeEEe----cC-----CCC-----CCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKY-TIGLGQECMA----FC-----SEV-----EDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~a----v~-----~~~-----Ed~~~la~~Aa 61 (465)
++|-|.++++.+|.. .+.+++.+.. |.+. .++ ..++..+... |. ++. .....|+++|+
T Consensus 28 ~~vaI~G~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa 106 (437)
T 2gqd_A 28 KRVVITGMGALSPIG-NDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAA 106 (437)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHH
T ss_pred CCEEEEEeeEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHH
Confidence 359999999999988 4666665432 2211 011 0011111111 00 111 12578999999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC-----------------Cc---------ccHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~-----------------~~---------ps~a~~l~~~LGl~g~~~~~~~ 111 (465)
+++|+++|+++++|| .|+++|.++.. .. ..++.+|+..||+ .. +++
T Consensus 107 ~~AL~dAGl~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl---~g-p~~ 182 (437)
T 2gqd_A 107 REAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGA---KG-PNG 182 (437)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---CS-SEE
T ss_pred HHHHHHcCCCccccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCC---CC-ceE
Confidence 999999999999999 99999876531 11 2578899999997 22 678
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc--cc------------------------cCCCCCccccccee
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA--VY------------------------AEGPARPTGGAAAV 165 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~--~y------------------------~~~~~~~t~GdGA~ 165 (465)
++..+|++++.||..|..+|++|.+ +.|||+++|.. .+ +...+...+||||+
T Consensus 183 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~G~v~geGaa 260 (437)
T 2gqd_A 183 ATVTACATGTNSIGEAFKIVQRGDA--DAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAG 260 (437)
T ss_dssp CBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTTSSCTTCTTCCSBCBBCEEE
T ss_pred EecCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccCccCCCCCccccCCCCCCCCCceeeceEE
Confidence 8999999999999999999999977 99999999963 11 01112356899999
Q ss_pred eeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012353 166 VMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (465)
Q Consensus 166 A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465)
|+||.+.+.. .+...+.|+... +...+.. |..++. ....+++..+++. |++++
T Consensus 261 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~-------p~~~~~--------~~~~ai~~Al~~A------gl~p~ 319 (437)
T 2gqd_A 261 ILVIESLESAQARGANIYAEIVGYGTTGDAYHITA-------PAPEGE--------GGSRAMQAAMDDA------GIEPK 319 (437)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSS-------CCGGGH--------HHHHHHHHHHHHH------TCCGG
T ss_pred EEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCC-------CCCCHH--------HHHHHHHHHHHHc------CCCHh
Confidence 9999764210 000012222221 1111112 212222 2333445555554 79999
Q ss_pred CCceeeccCCchHHHHHH
Q 012353 240 NADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 240 did~~~~H~p~~km~~~~ 257 (465)
|||++.+|+.++++.+.+
T Consensus 320 dId~ve~HgtgT~~~D~~ 337 (437)
T 2gqd_A 320 DVQYLNAHGTSTPVGDLN 337 (437)
T ss_dssp GCCEEECCCCSCHHHHHH
T ss_pred hCCEEEEECCCCcCcCHH
Confidence 999999999999987644
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=148.24 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=146.0
Q ss_pred eeEEeEEEEecCCceechHHHHHhc--CCCh----hhh-hhhhcCeEEecCC---------C-----CCCHHHHHHHHHH
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHD--GASK----GKY-TIGLGQECMAFCS---------E-----VEDVISMSLTAVT 62 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~av~~---------~-----~Ed~~~la~~Aa~ 62 (465)
+|.|.++++.+|.. .+.+++.+.. |.+. .++ ..++..+.-...+ + -.....|+++|++
T Consensus 24 ~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~aa~ 102 (430)
T 1ox0_A 24 RVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQ 102 (430)
T ss_dssp CEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCc-CCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 59999999999987 5776665443 3211 011 0111111111100 0 1124689999999
Q ss_pred HHHHHCCCCcCCcc----EEEEEeecCCC---------------------Ccc-----cHHHHHHHHhcccCCCCceeEe
Q 012353 63 NLLEKYKIDPKQIG----RLEVGSETVID---------------------KSK-----SIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 63 ~aL~~agi~~~~Id----~li~~T~s~~~---------------------~~p-----s~a~~l~~~LGl~g~~~~~~~d 112 (465)
++|+++|+++++|| .|+++|.++.. ..| .++.+|+..||+ . .++++
T Consensus 103 ~AL~dAG~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl---~-Gp~~~ 178 (430)
T 1ox0_A 103 EAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGA---N-GVCKS 178 (430)
T ss_dssp HHHHHTTCCTTTSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---C-SCEEC
T ss_pred HHHHHcCCChhhcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcC---C-CceEe
Confidence 99999999999999 58888876531 111 478899999997 2 36899
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-c------------c-----C--------CCCCcccccceee
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-Y------------A-----E--------GPARPTGGAAAVV 166 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-y------------~-----~--------~~~~~t~GdGA~A 166 (465)
+.++|++++.||..|..+|++|.+ +.|||+++|... . . + ..+...+||||+|
T Consensus 179 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pFd~~~~g~~~geGAaa 256 (430)
T 1ox0_A 179 INTACSSSNDAIGDAFRSIKFGFQ--DVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGM 256 (430)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCSSTTSSSCTTBTTCCSBCBCCEEEE
T ss_pred ecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhCCCccCCCCCCCCCCCCCCCCCCccccceEEE
Confidence 999999999999999999999977 999999999741 0 0 0 1123568999999
Q ss_pred eeecCCCC-----cccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012353 167 MLVGPDAP-----VAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (465)
Q Consensus 167 ~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~d 240 (465)
+||++.+. ..+...+.|+.. .+......| ..++. ....+++..+++. |++++|
T Consensus 257 vvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p-------~~~~~--------~~~~ai~~al~~A------gl~~~d 315 (430)
T 1ox0_A 257 LVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSP-------HPEGQ--------GAIKAIKLALEEA------EISPEQ 315 (430)
T ss_dssp EEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC-------CTTCH--------HHHHHHHHHHHHH------TCCGGG
T ss_pred EEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCC-------CCChH--------HHHHHHHHHHHHh------CcCHHH
Confidence 99986421 000001222211 111112222 12232 2233444555554 799999
Q ss_pred CceeeccCCchHHHHHH
Q 012353 241 ADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 241 id~~~~H~p~~km~~~~ 257 (465)
||++..|+.++.+.+..
T Consensus 316 Id~ve~Hgtgt~~~D~~ 332 (430)
T 1ox0_A 316 VAYVNAHGTSTPANEKG 332 (430)
T ss_dssp CCCEECCCCSCHHHHHH
T ss_pred cCEEEEeCCcCcccCHH
Confidence 99999999999987654
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-14 Score=146.18 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=145.9
Q ss_pred eeEEeEEEEecCCceechHHHHHhc--CCCh----hhh-hhhhcCeEEecCC-CC-------------CCHHHHHHHHHH
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHD--GASK----GKY-TIGLGQECMAFCS-EV-------------EDVISMSLTAVT 62 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~av~~-~~-------------Ed~~~la~~Aa~ 62 (465)
+|.|.++++.+|... +.+++.+.. |.+. .++ ..++..+.....+ .+ .....|+++|++
T Consensus 8 ~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa~ 86 (416)
T 1e5m_A 8 RVVVTGLGAITPIGN-TLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQ 86 (416)
T ss_dssp CEEEEEEEEEBTTBS-SHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHHH
T ss_pred CEEEEeeeEECCCCC-CHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHHHHHHHHH
Confidence 599999999999884 666655442 2211 011 0111111111111 00 123589999999
Q ss_pred HHHHHCCCCcCCcc----EEEEEeecCCC-----------------Cc---------ccHHHHHHHHhcccCCCCceeEe
Q 012353 63 NLLEKYKIDPKQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 63 ~aL~~agi~~~~Id----~li~~T~s~~~-----------------~~---------ps~a~~l~~~LGl~g~~~~~~~d 112 (465)
++|+++|+++++|| .|+++|.++.. .. ..++.+|+..||+ . .++++
T Consensus 87 ~Al~dAg~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl---~-gp~~~ 162 (416)
T 1e5m_A 87 QAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGA---K-GPNNC 162 (416)
T ss_dssp HHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---C-SCEEC
T ss_pred HHHHHcCCChhhcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCC---C-CceeC
Confidence 99999999999999 79999876531 11 2478899999997 2 36789
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c-c-----------c--------------CCCCCccccccee
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V-Y-----------A--------------EGPARPTGGAAAV 165 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~-y-----------~--------------~~~~~~t~GdGA~ 165 (465)
+..+|++++.||..|..+|++|.+ +.|||+++|.. . . . ...+...+||||+
T Consensus 163 v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~geGaa 240 (416)
T 1e5m_A 163 TVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240 (416)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEE
T ss_pred ccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCceeeeeEE
Confidence 999999999999999999999977 99999999963 1 1 0 0012356899999
Q ss_pred eeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012353 166 VMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (465)
Q Consensus 166 A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465)
|+||.+.+.. .+...+.|+... +...+..| ..++. ....+++..+++. |++++
T Consensus 241 avvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p-------~~~~~--------~~~~ai~~al~~a------gl~~~ 299 (416)
T 1e5m_A 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAP-------VPDGR--------GATRAIAWALKDS------GLKPE 299 (416)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC-------CTTCH--------HHHHHHHHHHHHH------TCCGG
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCC-------CCCHH--------HHHHHHHHHHHHc------CCCHh
Confidence 9999864210 000012222221 11112222 22332 2233444455554 79999
Q ss_pred CCceeeccCCchHHHHHH
Q 012353 240 NADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 240 did~~~~H~p~~km~~~~ 257 (465)
|||++..|+.++++.+.+
T Consensus 300 dId~ve~Hgtgt~~~D~~ 317 (416)
T 1e5m_A 300 MVSYINAHGTSTPANDVT 317 (416)
T ss_dssp GCCEEECCCCSCHHHHHH
T ss_pred HCCEEEEECCCCcCcCHH
Confidence 999999999999877654
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-15 Score=150.09 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFN 126 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~ 126 (465)
.+++..+|+++|++++|++ +|+++++||.|++++.++... .+.++..++..||+ +..+++++++.+|++++.||..
T Consensus 28 ~~~~~~~L~~~A~~~AL~~~AGl~~~dId~vi~g~~~~~~~~~~~~a~~va~~lGl--p~~~pa~~v~~~Css~~~Al~~ 105 (407)
T 3svk_A 28 TEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVGDQGGDIARTAVLAAGL--PETTGGVQLNRFCASGLEAVNT 105 (407)
T ss_dssp TTSCHHHHHHHHHHHHHHHSTTCCGGGEEEEEEECC--------CHHHHHHHHTTC--CTTCEEEEEC---CBSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhcCcCHHHCCEEEEEecCccccccCcHHHHHHHHcCC--CCCCceEEecCcChhHHHHHHH
Confidence 4688999999999999999 999999999999999887653 57889999999998 5689999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|..+|++|.+ +.|||+++|..
T Consensus 106 A~~~I~sG~~--d~vLv~G~e~~ 126 (407)
T 3svk_A 106 AAQKVRSGWD--DLVLAGGVESM 126 (407)
T ss_dssp HHHHHHHTSC--CEEEEEEEECC
T ss_pred HHHHHHcCCC--CEEEEEEEccc
Confidence 9999999977 99999999865
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=147.84 Aligned_cols=227 Identities=12% Similarity=0.092 Sum_probs=144.1
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEe-cCCC-------------CCCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMA-FCSE-------------VEDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~a-v~~~-------------~Ed~~~la~~Aa 61 (465)
++|-|.+++..+|--. +.+++.+.. |.+ + .++. .+...+.-. +.+. -.....|+++|+
T Consensus 18 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~aa 96 (427)
T 3ho9_A 18 RRVVVTGLGMLSPVGN-TVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG 96 (427)
T ss_dssp CCEEEEEEEEEBTTBS-SHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHHHHH
Confidence 5699999999999874 677665543 322 1 0110 011111111 1110 012468999999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCC--------------------------CCcccHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVI--------------------------DKSKSIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~--------------------------~~~ps~a~~l~~~LGl~g~~~~~~~ 111 (465)
+++|+++|+++++|| .++++|.++. ...+.++..|+..||+. .+++
T Consensus 97 ~~AL~dAGl~~~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~----Gp~~ 172 (427)
T 3ho9_A 97 VQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLR----GPSI 172 (427)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC----SCEE
T ss_pred HHHHHHCCCCcccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCC----CCee
Confidence 999999999999999 5888887531 11235788999999982 3588
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c--------------------cCCCCCcccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y--------------------AEGPARPTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y--------------------~~~~~~~t~GdGA 164 (465)
.+..||++++.||..|..+|++|.+ +.|||+++|... + .......++||||
T Consensus 173 ~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~geGA 250 (427)
T 3ho9_A 173 SIATAATSGVHNIGHAARIIAYGDA--DVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGA 250 (427)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEE
T ss_pred cccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCceeeeeE
Confidence 8999999999999999999999987 999999999862 0 0111235689999
Q ss_pred eeeeecCCCC-----ccccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012353 165 VVMLVGPDAP-----VAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238 (465)
Q Consensus 165 ~A~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (465)
+|+||.+.+. ..+...+.++... +......| ..++. ....+++..+++. |+++
T Consensus 251 aavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p-------~~~~~--------~~~~ai~~al~~A------gl~~ 309 (427)
T 3ho9_A 251 GMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP-------PENGA--------GAALAMANALRDA------GIEA 309 (427)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBC-------CTTCH--------HHHHHHHHHHHHH------TCCG
T ss_pred EEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCC-------CCCHH--------HHHHHHHHHHHHc------CCCH
Confidence 9999987421 0000112222211 11112222 12232 2223444455554 7999
Q ss_pred CCCceeeccCCchHHHHHH
Q 012353 239 SNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 239 ~did~~~~H~p~~km~~~~ 257 (465)
+|||++..|..++......
T Consensus 310 ~dId~ve~HgtgT~~~d~~ 328 (427)
T 3ho9_A 310 SQIGYVNAHGTSTPAGDKA 328 (427)
T ss_dssp GGCCEEECCCCSCHHHHHH
T ss_pred HHccEEEecCCcCCCcCHH
Confidence 9999999997666654443
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=148.63 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHC-CCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKY-KIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFN 126 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~ 126 (465)
.+++..+|+++|++++|+++ |+++++||.|++++.++... .+..+..++..+|+ ...+++++++.+|++++.||.+
T Consensus 23 ~~~~~~~L~~~a~~~Al~~a~gi~~~~Id~v~~g~~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~v~~aCss~l~Al~~ 100 (387)
T 3goa_A 23 RNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEI--PHSVPAVTVNRLCGSSMQALHD 100 (387)
T ss_dssp TTSCHHHHHHHHHHHHHHHCTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTC--CTTSCCEEEECGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEEcccCCcccccHHHHHHHHHcCC--CCCCcEeEecCcchHHHHHHHH
Confidence 36789999999999999999 99999999999999988765 67899999999997 5578999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeccc
Q 012353 127 CVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 127 A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
|..+|++|.+ +.|||+++|..
T Consensus 101 A~~~I~sG~~--d~vLv~G~e~~ 121 (387)
T 3goa_A 101 AARMIMTGDA--QVCLVGGVEHM 121 (387)
T ss_dssp HHHHHHTTSC--SEEEEEEEECT
T ss_pred HHHHHhCCCC--CEEEEEEEecC
Confidence 9999999977 99999999854
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=143.16 Aligned_cols=229 Identities=14% Similarity=0.060 Sum_probs=146.7
Q ss_pred CceeEEeEEEEecCCceechHHHHHhc--CCCh----hhhh-hhhcCeEEecCC----------------------CCCC
Q 012353 2 AKNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKYT-IGLGQECMAFCS----------------------EVED 52 (465)
Q Consensus 2 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~av~~----------------------~~Ed 52 (465)
.+.|-|.++++.+|-- .+.+++.+.. |.+. .++. .++..+.-...+ .-+.
T Consensus 23 ~~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~g~v~~~~~~~~~~fd~~~~i~~~~~~~~d~ 101 (451)
T 4ddo_A 23 TLRVVVTGIGIVSPLG-CGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDR 101 (451)
T ss_dssp -CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCHHHHTTSSCCEEECCCCTTTCTTTCCCGGGTSCHHHHTTSCH
T ss_pred CCCEEEEEeEEECCCC-CCHHHHHHHHHcCCCeeeeCCccccccccCccceEccccccccccccchhhhCCHHHHhhCCH
Confidence 3479999999999987 4677665543 2221 1110 111111111111 1123
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCc-c----EEEEEeecCC--------------------------CCcccHHHHHHHHhc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQI-G----RLEVGSETVI--------------------------DKSKSIKTFLMQIFE 101 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~I-d----~li~~T~s~~--------------------------~~~ps~a~~l~~~LG 101 (465)
...|+++|++++|+++|+++++| | .|+++|.++. ...+..+..|+..||
T Consensus 102 ~~~L~l~Aa~~AL~dAGl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 181 (451)
T 4ddo_A 102 FIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHR 181 (451)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHHhc
Confidence 57899999999999999999999 7 6888876421 123457889999999
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c---------------------cC
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------------------AE 153 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y---------------------~~ 153 (465)
+ . .+++++..+|++++.||..|..+|++|.+ +.|||+++|... + ..
T Consensus 182 l---~-Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~ 255 (451)
T 4ddo_A 182 F---R-GPLGCPVTACAASVQAIGDAMRMIRTGEA--DVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDR 255 (451)
T ss_dssp C---C-SCEECCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBT
T ss_pred C---C-CceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeccccccCHHHHHHHHHHhhhccCCCcCcccccccccc
Confidence 7 2 26889999999999999999999999987 999999999842 0 00
Q ss_pred CCCCcccccceeeeeecCCCC-----ccccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 154 GPARPTGGAAAVVMLVGPDAP-----VAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 154 ~~~~~t~GdGA~A~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
..+..++||||+|+||.+.+. ..+...+.++... +...+.. |..++. ....+++..+++
T Consensus 256 ~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~-------~~~~~~--------~~~~ai~~al~~ 320 (451)
T 4ddo_A 256 DRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTA-------GPDDGS--------GAMRAMKLALRM 320 (451)
T ss_dssp TCCSBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSC-------CCTTCH--------HHHHHHHHHHHH
T ss_pred CCCCcEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCC-------CCCCHH--------HHHHHHHHHHHH
Confidence 112346899999999987421 0000012222221 1111111 112232 222344445555
Q ss_pred hhhhhcCCCCCCCCceeeccCCchHHHHHHH
Q 012353 228 YEKLEGKQFSLSNADYFVFHSPYNKLVQKSF 258 (465)
Q Consensus 228 ~~~~~~~~~~~~did~~~~H~p~~km~~~~~ 258 (465)
. |++++|||++.+|..++.+.+...
T Consensus 321 A------gl~~~dId~ve~Hgtgt~~~d~~E 345 (451)
T 4ddo_A 321 G------DVAPEQVDYVNAHATSTPVGDAGE 345 (451)
T ss_dssp H------TCCGGGCCEEECCCCSCHHHHHHH
T ss_pred c------CCCHHHcCEEEecCCcCcccCHHH
Confidence 4 799999999999999988776543
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-14 Score=144.64 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+++..+|+++|++++|+++|+++++||.+++++.++....+..+.+|+..||+ ....+++++..+|++++.||..|..
T Consensus 27 ~~~~~~L~~~a~~~Al~dAGl~~~~id~v~~g~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaSg~~Ai~~A~~ 104 (397)
T 1wl4_A 27 AVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGI--PYSVPAWSCQMICGSGLKAVCLAVQ 104 (397)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCCHHHHHHHHHcCC--CCCccEEEecCcChhHHHHHHHHHH
Confidence 67889999999999999999999999999999988766667899999999997 4468899999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc
Q 012353 130 WVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~ 149 (465)
+|++|.+ +.|||+++|..
T Consensus 105 ~I~~G~~--d~vlagG~e~~ 122 (397)
T 1wl4_A 105 SIGIGDS--SIVVAGGMENM 122 (397)
T ss_dssp HHHTTSC--SEEEEEEEEES
T ss_pred HHHCCCC--CEEEEEEEeec
Confidence 9999977 99999999864
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-14 Score=144.46 Aligned_cols=97 Identities=8% Similarity=0.132 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+++..+|+++|++++|+++|+++++||.|++++.++... .+..+..|+..||+ ..+.++++++++|++++.||..|
T Consensus 22 ~~~~~~~L~~~Aa~~Al~dAgl~~~~id~v~~g~~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCas~~~Al~~A 99 (401)
T 1ulq_A 22 ASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF--PVEVAGCTVNRLCGSGLEAVAQA 99 (401)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCChHHHHHHHHhCC--CCCccEeeccccchHHHHHHHHH
Confidence 5788999999999999999999999999999999887665 57899999999997 45789999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~ 149 (465)
..+|++|.+ +.|||+++|..
T Consensus 100 ~~~I~~G~~--d~vLv~G~e~~ 119 (401)
T 1ulq_A 100 ARAIWAGEG--KVYIGSGVESM 119 (401)
T ss_dssp HHHHHTTSC--SEEEEEEEEES
T ss_pred HHHHHCCCC--CEEEEEEEeec
Confidence 999999977 99999999864
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-13 Score=140.07 Aligned_cols=227 Identities=13% Similarity=0.118 Sum_probs=145.3
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhhh-hhhcCeEEecCC--------------------CCCCHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKYT-IGLGQECMAFCS--------------------EVEDVIS 55 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~av~~--------------------~~Ed~~~ 55 (465)
++|-|.++++.+|.- .+.+++.+.. |.+. .++. .++-.+.....+ .-.....
T Consensus 21 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 21 RRVVITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 469999999999977 5777765543 2211 0110 011111111110 0122578
Q ss_pred HHHHHHHHHHHHCCCCc-CCcc----EEEEEeecCCC-----------------C--------cc-cHHHHHHHHhcccC
Q 012353 56 MSLTAVTNLLEKYKIDP-KQIG----RLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKFG 104 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~-~~Id----~li~~T~s~~~-----------------~--------~p-s~a~~l~~~LGl~g 104 (465)
|+++|++++|+++|+++ ++|| .|+++|.++.. . .+ .++.+|+..||+
T Consensus 100 l~l~aa~~AL~dAGl~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl-- 177 (438)
T 2iwz_A 100 MAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKL-- 177 (438)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCCCcccccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhCC--
Confidence 99999999999999998 8887 58888876532 1 12 478899999997
Q ss_pred CCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c-c-----------c-----CC--------CCCc
Q 012353 105 NTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V-Y-----------A-----EG--------PARP 158 (465)
Q Consensus 105 ~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~-y-----------~-----~~--------~~~~ 158 (465)
.. +++++.++|++++.||..|..+|++|.+ +.|||+++|.. . + . .. ....
T Consensus 178 -~g-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~G~ 253 (438)
T 2iwz_A 178 -KG-PNHAVSTACTTGAHAVGDSFRFIAHGDA--DVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKRDGF 253 (438)
T ss_dssp -CS-CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCSCTTTSCCTTCTTCCSB
T ss_pred -CC-ceeeecCchhHHHHHHHHHHHHHHcCCC--CEEEEEeeehhcCHHHHHHHHhcCCcCCCCCCCcccccCCCCCCCE
Confidence 22 6889999999999999999999999977 99999999963 1 0 0 01 1235
Q ss_pred ccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q 012353 159 TGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLE 232 (465)
Q Consensus 159 t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~ 232 (465)
.+||||+|+||++.+.. .+...+.++... +...+..|. .++. ....+++..+++.
T Consensus 254 ~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~-------~~~~--------~~~~ai~~Al~~A---- 314 (438)
T 2iwz_A 254 VMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPD-------PEGE--------GALRCMAAALKDA---- 314 (438)
T ss_dssp CBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCC-------TTCH--------HHHHHHHHHHHHH----
T ss_pred EeeceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCC-------CCHH--------HHHHHHHHHHHHc----
Confidence 68999999999864210 000012222211 111122221 2232 2233444454554
Q ss_pred cCCCCCCCCceeeccCCchHHHHHH
Q 012353 233 GKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 233 ~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
|++++|||++..|+.++.+.+.+
T Consensus 315 --gl~p~dId~ve~HgtgT~~gD~~ 337 (438)
T 2iwz_A 315 --GVQPEEISYINAHATSTPLGDAA 337 (438)
T ss_dssp --TCCGGGCCEEECCCCSCHHHHHH
T ss_pred --CCCHHHcCEEEecCCCCcccCHH
Confidence 79999999999999999876644
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-14 Score=144.87 Aligned_cols=96 Identities=8% Similarity=0.051 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~ 129 (465)
+++..+|+++|++++|+++|+++++||.+++++.++....+..+..|+..||+ ....+++.+..+|++++.||..|..
T Consensus 24 ~~~~~~L~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaSgl~Al~~A~~ 101 (392)
T 2vu1_A 24 NTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGV--PQEATAWGMNQLCGSGLRAVALGMQ 101 (392)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCcHHHHHHHHHcCC--CCCceEEEecccchHHHHHHHHHHH
Confidence 67899999999999999999999999999999888766567899999999998 3347899999999999999999999
Q ss_pred HHHcCCCCCCEEEEEEeccc
Q 012353 130 WVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~ 149 (465)
+|++|.+ +.|||+++|..
T Consensus 102 ~I~~G~~--d~vlvgG~e~~ 119 (392)
T 2vu1_A 102 QIATGDA--SIIVAGGMESM 119 (392)
T ss_dssp HHHTTSC--SCEEEEEEEES
T ss_pred HHHCCCC--CEEEEEEEecc
Confidence 9999977 99999999864
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-13 Score=137.55 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=145.8
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-h-hhcCeEEecCC----C----------CCCHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-I-GLGQECMAFCS----E----------VEDVISMSLTA 60 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~-Gig~r~~av~~----~----------~Ed~~~la~~A 60 (465)
++|-|.++++.+|-- .+.+++.+.. |.+ + ..+. . ++..+.....+ . -.....|+++|
T Consensus 6 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~a 84 (412)
T 4ewg_A 6 KRVVITGMGGVTALG-SRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVRA 84 (412)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHHH
T ss_pred CEEEEEeeEEECCCc-CCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHHH
Confidence 469999999999986 4677665543 322 1 0111 0 11111111110 0 12256799999
Q ss_pred HHHHHHHCCC-CcCCcc----EEEEEeecCC--------------------------CCcccHHHHHHHHhcccCCCCce
Q 012353 61 VTNLLEKYKI-DPKQIG----RLEVGSETVI--------------------------DKSKSIKTFLMQIFEKFGNTDIE 109 (465)
Q Consensus 61 a~~aL~~agi-~~~~Id----~li~~T~s~~--------------------------~~~ps~a~~l~~~LGl~g~~~~~ 109 (465)
++++|+++|+ ++++|| .++++|.++. ...+.++..|+..||+ . .+
T Consensus 85 a~~Al~dAGl~~~~~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl---~-gp 160 (412)
T 4ewg_A 85 SELALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDL---K-GR 160 (412)
T ss_dssp HHHHHHHHTCTTCGGGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTC---C-SC
T ss_pred HHHHHHhcCCCCccccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCC---C-CC
Confidence 9999999999 778888 7888876632 1124578899999997 2 36
Q ss_pred eEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------cc------C--------------CCCCcccccc
Q 012353 110 GVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------YA------E--------------GPARPTGGAA 163 (465)
Q Consensus 110 ~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------y~------~--------------~~~~~t~GdG 163 (465)
++.+..+|++++.||..|..+|++|.+ +.|||+++|... +. . ..+...+|||
T Consensus 161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geG 238 (412)
T 4ewg_A 161 IVPTSSACASGSQAIGYAYENIAMGKQ--TLMLAGGAEELSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEG 238 (412)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCE
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeccccCCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECe
Confidence 889999999999999999999999987 999999999752 10 0 0112458999
Q ss_pred eeeeeecCCCC-----ccccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012353 164 AVVMLVGPDAP-----VAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS 237 (465)
Q Consensus 164 A~A~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 237 (465)
|+|+||.+.+. ..+...+.|+... +...+..| ++ .....+++..+++. |++
T Consensus 239 AaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p---------~~--------~~~~~ai~~Al~~A------gl~ 295 (412)
T 4ewg_A 239 AATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP---------TA--------STMARAMQLALEDA------KLD 295 (412)
T ss_dssp EEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSC---------CH--------HHHHHHHHHHHHHT------TCC
T ss_pred EEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCC---------CH--------HHHHHHHHHHHHHc------CCC
Confidence 99999987421 0011112222221 11112222 11 23334555555554 799
Q ss_pred CCCCceeeccCCchHHHHHH
Q 012353 238 LSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 238 ~~did~~~~H~p~~km~~~~ 257 (465)
++|||++..|..++.+.+..
T Consensus 296 ~~dId~ve~Hgtgt~~~D~~ 315 (412)
T 4ewg_A 296 ANAIAYVNAHGTSTDRGDVA 315 (412)
T ss_dssp GGGEEEEECCCCCCHHHHHH
T ss_pred HHHCCEEEccCCCCccccHH
Confidence 99999999999999877654
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=143.26 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHCCCCcCC-cc----EEEEEeecC--------------------------CCCcccHHHHHHHHhc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQ-IG----RLEVGSETV--------------------------IDKSKSIKTFLMQIFE 101 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~-Id----~li~~T~s~--------------------------~~~~ps~a~~l~~~LG 101 (465)
...|+++|++++|+++|+++++ || .++++|..+ ....+..+..|+..||
T Consensus 87 ~~~l~l~aa~~AL~dAGl~~~~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lg 166 (428)
T 3kzu_A 87 FIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHK 166 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCChhhhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHHHcC
Confidence 5789999999999999999998 87 577777532 2233457889999999
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------------ccC---------------
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------------YAE--------------- 153 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------------y~~--------------- 153 (465)
+. .+++.+..+|++++.||..|..+|++|.+ +.|||+++|... ...
T Consensus 167 l~----Gp~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~ 240 (428)
T 3kzu_A 167 LR----GPNHSVVTACATGTHAIGDAARLIAFGDA--DVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDE 240 (428)
T ss_dssp CC----SCEECBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBT
T ss_pred CC----CceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCccc
Confidence 72 26788999999999999999999999987 999999999720 000
Q ss_pred CCCCcccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 154 GPARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 154 ~~~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
..+..++||||+|+||.+.+.. .+...+.++... +...... |..++. ....+++..+++
T Consensus 241 ~~~G~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~-------p~~~~~--------~~~~ai~~al~~ 305 (428)
T 3kzu_A 241 DRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITA-------PTESGE--------GAQRCMVAALKR 305 (428)
T ss_dssp TCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSS-------CCTTCH--------HHHHHHHHHHHH
T ss_pred CCCceeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCC-------CCCCHH--------HHHHHHHHHHHH
Confidence 0123468999999999874210 000012222211 1111112 222332 222344445555
Q ss_pred hhhhhcCCCCCCCCceeeccCCch
Q 012353 228 YEKLEGKQFSLSNADYFVFHSPYN 251 (465)
Q Consensus 228 ~~~~~~~~~~~~did~~~~H~p~~ 251 (465)
. |++++|||++..|..++
T Consensus 306 A------gl~~~dId~ve~HgtgT 323 (428)
T 3kzu_A 306 A------GIVPDEIDYINAHGTST 323 (428)
T ss_dssp H------TCCGGGCCEEECCCCSS
T ss_pred c------CCCHHHeeEEEecCCcc
Confidence 4 79999999999994444
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-13 Score=137.84 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+++..+|+++|++++|+++|+++++||.+++++.++....+..+..|+..||+ ..+.+++++..+|++++.||..|.
T Consensus 28 ~~~~~~~l~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~~a~~va~~lgl--~~~~p~~~v~~aCaS~~~Al~~A~ 105 (395)
T 2ib8_A 28 SLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGL--PISTPCTTINKVCASGMKAIMMAS 105 (395)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTCCEEEEECGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCchHHHHHHHHcCC--CCCceEEEecccccHHHHHHHHHH
Confidence 358899999999999999999999999999999988777678899999999997 456889999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~ 149 (465)
.+|++|.+ +.|||+++|..
T Consensus 106 ~~I~~G~~--d~vlvgG~e~~ 124 (395)
T 2ib8_A 106 QSLMCGHQ--DVMVAGGMESM 124 (395)
T ss_dssp HHHHTTSC--SEEEEEEEEEG
T ss_pred HHHHCCCC--CEEEEEeeecc
Confidence 99999977 99999999853
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-12 Score=132.52 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=142.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhhh---hhhcCeEEecCCCC-------------CCHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKYT---IGLGQECMAFCSEV-------------EDVISMSLTA 60 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~---~Gig~r~~av~~~~-------------Ed~~~la~~A 60 (465)
++|-|.++++.+|--. +.+++.+.. |.+. .++. .++..+.-.+.+++ .....|+++|
T Consensus 28 ~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~d~~~~l~l~a 106 (434)
T 2gp6_A 28 PYVVVTGIAMTTALAT-DAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRIELRRMGYLQRMSTVL 106 (434)
T ss_dssp CCEEEEEEEEECSSCS-SHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSCCSTTSSCHHHHHTCCHHHHHHHHH
T ss_pred CCEEEEeeEEeCCCCC-CHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCCchhhhCCHHHHHhCCHHHHHHHHH
Confidence 4699999999999885 777765543 3221 1111 12222221221111 1247899999
Q ss_pred HHHHHHHCCCC---cCCccEEEEEeecCCC-----------------Ccc---------cHHHHHHHHhcccCCCCceeE
Q 012353 61 VTNLLEKYKID---PKQIGRLEVGSETVID-----------------KSK---------SIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 61 a~~aL~~agi~---~~~Id~li~~T~s~~~-----------------~~p---------s~a~~l~~~LGl~g~~~~~~~ 111 (465)
++++|+++|++ +++|+ |+++|.++.+ ..| .++.+|+..||+ . .+++
T Consensus 107 a~~ALedAG~~~~~~~~ig-v~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl---~-Gp~~ 181 (434)
T 2gp6_A 107 SRRLWENAGSPEVDTNRLM-VSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHA---K-AGVM 181 (434)
T ss_dssp HHHHHHHTTCCCCCTTSEE-EEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCC---C-SCEE
T ss_pred HHHHHHhcCCCccCCCceE-EEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcC---C-CCeE
Confidence 99999999984 55665 6777776543 111 468899999997 2 4679
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------------ccC-------C--------CCCcccccc
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------------YAE-------G--------PARPTGGAA 163 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------------y~~-------~--------~~~~t~GdG 163 (465)
++.++|++++.||..|..+|++|.+ +.|||+++|... ... + .+...+|||
T Consensus 182 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~~g~v~gdG 259 (434)
T 2gp6_A 182 TPVSACASGAEAIARAWQQIVLGEA--DAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEG 259 (434)
T ss_dssp CEECGGGHHHHHHHHHHHHHHHTSC--SEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTCCCCCBBCC
T ss_pred EeCCCCcHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccCCCcceecc
Confidence 9999999999999999999999977 999999999741 100 0 112468999
Q ss_pred eeeeeecCCCC-----cccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012353 164 AVVMLVGPDAP-----VAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS 237 (465)
Q Consensus 164 A~A~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 237 (465)
|+|+||.+.+. ..+...+.++.. .+...+..|. .++ .....+++..+++. |++
T Consensus 260 AaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~-------~~~--------~~~~~ai~~al~~A------gl~ 318 (434)
T 2gp6_A 260 GALLLIETEEHAKARGANILARIMGASITSDGFHMVAPD-------PNG--------ERAGHAITRAIQLA------GLA 318 (434)
T ss_dssp EEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCC-------TTC--------HHHHHHHHHHHHHT------TCC
T ss_pred eEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCC-------CCh--------HHHHHHHHHHHHHc------CCC
Confidence 99999986421 000001222221 1111122221 122 12333445555554 799
Q ss_pred CCCCceeeccCCchHHHHHH
Q 012353 238 LSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 238 ~~did~~~~H~p~~km~~~~ 257 (465)
++|||++.+|...+.+.+.+
T Consensus 319 ~~dId~ve~Hgtgt~~~D~~ 338 (434)
T 2gp6_A 319 PGDIDHVNAHATGTQVGDLA 338 (434)
T ss_dssp TTTEEEEECCCCSCHHHHHH
T ss_pred HHHcCEEEEeCCcCccchHH
Confidence 99999999998777765443
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-13 Score=139.29 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHCCC-CcCCcc----EEEEEeecCC-----------------CCc---------ccHHHHHHHHhc
Q 012353 53 VISMSLTAVTNLLEKYKI-DPKQIG----RLEVGSETVI-----------------DKS---------KSIKTFLMQIFE 101 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi-~~~~Id----~li~~T~s~~-----------------~~~---------ps~a~~l~~~LG 101 (465)
...|+++|++++|+++|+ ++++|| .|++++.++. ... ..++.+|+..||
T Consensus 88 ~~~l~l~aa~~AL~dAG~~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 167 (431)
T 2ix4_A 88 FIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYG 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchhHHHHHHHHHHHC
Confidence 458999999999999999 988888 5777776542 111 247889999999
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-------------c---------------C
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-------------A---------------E 153 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-------------~---------------~ 153 (465)
+ . .+++++.++|++++.||..|..+|++|.+ +.|||+++|...- . .
T Consensus 168 l---~-gp~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~ 241 (431)
T 2ix4_A 168 F---Q-GPNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDC 241 (431)
T ss_dssp C---C-SCEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCTTBT
T ss_pred C---C-CceeCccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccccCccccCCcccccccCCC
Confidence 7 2 26799999999999999999999999977 9999999996410 0 0
Q ss_pred CCCCcccccceeeeeecCCCCc-----cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 012353 154 GPARPTGGAAAVVMLVGPDAPV-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK 227 (465)
Q Consensus 154 ~~~~~t~GdGA~A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~ 227 (465)
..+..++||||+|+||.+.+.. .+...+.++... +...+..|. .++ .....+++..+++
T Consensus 242 ~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~-------~~~--------~~~~~ai~~al~~ 306 (431)
T 2ix4_A 242 DRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPP-------EDG--------KGAVLAMTRALRQ 306 (431)
T ss_dssp TCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCC-------TTC--------HHHHHHHHHHHHH
T ss_pred CCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCC-------CCH--------HHHHHHHHHHHHH
Confidence 1123568999999999864210 000012222211 111122221 122 1233344555555
Q ss_pred hhhhhcCCCCCCCCceeeccCCchHHHHHH
Q 012353 228 YEKLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 228 ~~~~~~~~~~~~did~~~~H~p~~km~~~~ 257 (465)
. |++++|||++..|..++.+.+.+
T Consensus 307 a------gl~~~dId~ve~HgtgT~~~D~~ 330 (431)
T 2ix4_A 307 S------GLCPNQIDYVNAHATSTPIGDAV 330 (431)
T ss_dssp H------TCCGGGCCEEECCCCSCHHHHHH
T ss_pred c------CCCHHHcCEEEEeCCcCcccCHH
Confidence 4 79999999999999998876654
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-13 Score=138.84 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCC----CCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYK----IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAAL 124 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~ag----i~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL 124 (465)
.+++..+|+++|++++|+++| +++++||.|++++.++....+..+.+|+..||+ ..+.++++++.+|++++.||
T Consensus 31 ~~~~~~~La~~Aa~~Al~~Ag~~~~l~~~~id~v~~g~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCasg~~Al 108 (393)
T 1afw_A 31 KDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGI--PYSTPFVALNRQCSSGLTAV 108 (393)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHCCEEEEEecCCCCCCChHHHHHHHHcCC--CCCceEEEEcCcCHHHHHHH
Confidence 478899999999999999999 999999999999988876667889999999997 45788999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 125 FNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 125 ~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
..|..+|++|.+ +.|||+++|..
T Consensus 109 ~~A~~~I~~G~~--d~vLv~G~e~~ 131 (393)
T 1afw_A 109 NDIANKIKVGQI--DIGLALGVESM 131 (393)
T ss_dssp HHHHHHHHTTSC--SEEEEEEEEEH
T ss_pred HHHHHHHHCCCC--CEEEEEEEEec
Confidence 999999999977 99999999853
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-13 Score=137.12 Aligned_cols=223 Identities=12% Similarity=-0.010 Sum_probs=144.9
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhhh-hhhcCeEEecC---------CCC-----CCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKYT-IGLGQECMAFC---------SEV-----EDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~av~---------~~~-----Ed~~~la~~Aa 61 (465)
+.|-|.+++..+|.-. +.+++.+.. |.+. .++. .++..+.-... ++. .....|+++|+
T Consensus 9 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~aa 87 (415)
T 1tqy_B 9 KSVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAA 87 (415)
T ss_dssp -CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHHH
Confidence 4699999999999885 777665542 2211 1110 11111111110 111 12578999999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC--------------------------CcccHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~--------------------------~~ps~a~~l~~~LGl~g~~~~~~~ 111 (465)
+++|+++|+++++|| .|+++|.++.. ..+.++.+|+..||+. .+++
T Consensus 88 ~~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~----gp~~ 163 (415)
T 1tqy_B 88 DWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMR----GPSS 163 (415)
T ss_dssp HHHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCC----SSCE
T ss_pred HHHHHHcCCCccccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCC----CceE
Confidence 999999999999999 89999875532 1356788999999982 3678
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c------------cc----C---------CCCCccccccee
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------------YA----E---------GPARPTGGAAAV 165 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~------------y~----~---------~~~~~t~GdGA~ 165 (465)
.+..+|++++.||..|..+|++| + +.|||+++|.. . .. . ......+||||+
T Consensus 164 ~v~~aCsS~l~Al~~A~~~I~~G-~--d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~pfd~~~~G~~~geGaa 240 (415)
T 1tqy_B 164 ALVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLPFDERAAGYVPGEGGA 240 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEECCCSHHHHHHHHTTSCBCCCSCGGGSCCTTSTTCCCBCBBCEEE
T ss_pred eecCCccHHHHHHHHHHHHHHcC-C--CEEEEeeecCcCCHHHHHHHHhccCccCCCCCCCCcCCCCCCCCCcceeeeEE
Confidence 89999999999999999999999 9 99999999983 1 01 0 011356899999
Q ss_pred eeeecCCCCc------cccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012353 166 VMLVGPDAPV------AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238 (465)
Q Consensus 166 A~Ll~~~~~~------~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (465)
|+||.+.+.. .+...+.|+... +...+..|. . +. .+ +++..+++. |+++
T Consensus 241 avvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~-------~-~~------~~----ai~~al~~A------gl~~ 296 (415)
T 1tqy_B 241 ILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRP-------A-GL------ER----AIRLALNDA------GTGP 296 (415)
T ss_dssp EEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCC-------C-SH------HH----HHHHHHHHH------TCCG
T ss_pred EEEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCC-------H-HH------HH----HHHHHHHHc------CCCH
Confidence 9999864210 000012222211 111122232 1 21 12 334444444 7999
Q ss_pred CCCceeeccCCchHHHHHH
Q 012353 239 SNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 239 ~did~~~~H~p~~km~~~~ 257 (465)
+|||++..|..++++.+.+
T Consensus 297 ~dId~ve~Hgtgt~~~D~~ 315 (415)
T 1tqy_B 297 EDVDVVFADGAGVPELDAA 315 (415)
T ss_dssp GGCCEEECCCCCSHHHHHH
T ss_pred hHCCEEEEeCCCCcCcCHH
Confidence 9999999999999877654
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=140.40 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+++..+|+++|++++|+++|+++++||.|++++.++... .+..+..|+..||+ ....++++++.+|++++.||..|
T Consensus 51 ~~~~~~~La~~Aa~~AL~dAGl~~~~Id~vi~g~~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCaSg~~Al~~A 128 (442)
T 2wu9_A 51 KDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGF--PETVAVRTVNRQCSSGLQAVADV 128 (442)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECCSSBHHHHHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCccCCCChHHHHHHHHcCC--CCCceEEEeCCcCHHHHHHHHHH
Confidence 3788999999999999999999999999999998876542 35678899999997 45788999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~ 149 (465)
..+|++|.+ +.|||+++|..
T Consensus 129 ~~~I~sG~~--d~vLvgG~e~~ 148 (442)
T 2wu9_A 129 AAAIKAGFY--DIGIGAGLESM 148 (442)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHCCCC--CEEEEEEEeec
Confidence 999999977 99999999864
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=138.36 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCcCCccEEEEEeecCCCC-cccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEKY-KIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~T~s~~~~-~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+++..+|+++|++++|+++ |+++++||.|++++.++... .+..+.+|+..||+ ....+++++..+|++++.||..|
T Consensus 27 ~~~~~~L~~~a~~~AL~dA~gl~~~~id~v~~g~~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaS~~~Al~~A 104 (390)
T 1wdk_C 27 NTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQI--PHTSAAQTVSRLCGSSMSALHTA 104 (390)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSS--CTTSEEEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeeccccCCCCcHHHHHHHHcCC--CCCccEEEEcccchhHHHHHHHH
Confidence 6789999999999999999 99999999999998887654 36789999999997 56788999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~ 149 (465)
..+|++|.+ +.|||+++|..
T Consensus 105 ~~~I~~G~~--d~vlvgG~e~~ 124 (390)
T 1wdk_C 105 AQAIMTGNG--DVFVVGGVEHM 124 (390)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHcCCC--CEEEEeeeecc
Confidence 999999977 99999999964
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-12 Score=131.94 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=144.9
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhh-hhhhcCeEEecC-------------CCCCCHHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKY-TIGLGQECMAFC-------------SEVEDVISMSLTAVT 62 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~av~-------------~~~Ed~~~la~~Aa~ 62 (465)
++|.|.++++.+|-- .+.+++.+.. |.+. ..+ ..++..+.-..+ ..-.....|++.|++
T Consensus 23 ~~V~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~~~fd~~~~i~~~~~~~~d~~~~l~~~aa~ 101 (428)
T 3mqd_A 23 RRVVVTGMGIVSSIG-SNTEEVTASLREAKSGISRAEEYAELGFRCQVHGAPDIDIESLVDRRAMRFHGRGTAWNHIAMD 101 (428)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCHHHHSCTGGGTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCc-CCHHHHHHHHHcCCCcceeCCcccccCCCcccccccCCChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 369999999999987 4777665543 3221 011 112221111110 011236789999999
Q ss_pred HHHHHCCCCcCCcc----EEEEEeecCCCC--------------------------cccHHHHHHHHhcccCCCCceeEe
Q 012353 63 NLLEKYKIDPKQIG----RLEVGSETVIDK--------------------------SKSIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 63 ~aL~~agi~~~~Id----~li~~T~s~~~~--------------------------~ps~a~~l~~~LGl~g~~~~~~~d 112 (465)
++|+++|+++++|| .|+++|.++... .+.++..|+..||+ ..+++.
T Consensus 102 ~Al~dAGl~~~~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl----~gp~~t 177 (428)
T 3mqd_A 102 QAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKI----KGINYS 177 (428)
T ss_dssp HHHHHHTCCHHHHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTC----CSCEEC
T ss_pred HHHHHcCCChhHccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCC----CCceee
Confidence 99999999999998 688888765422 23578899999997 237889
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc---------------------------cCCCCCccccccee
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY---------------------------AEGPARPTGGAAAV 165 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y---------------------------~~~~~~~t~GdGA~ 165 (465)
+..+|++++.||..|..+|++|.+ +.|||+++|.... +...+..++||||+
T Consensus 178 v~~aCsSgl~Ai~~A~~~I~~G~~--d~alvgG~e~~s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gEGAa 255 (428)
T 3mqd_A 178 ISSACATSNHCIGNAYEMIQYGKQ--DRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAG 255 (428)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred ecCccHHHHHHHHHHHHHHHcCCC--CEEEEEeecccchHHHHHHHHhhhhcccccCCcccccCcccCCCCCcccccceE
Confidence 999999999999999999999977 9999999997510 01112356899999
Q ss_pred eeeecCCCC-----ccccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012353 166 VMLVGPDAP-----VAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (465)
Q Consensus 166 A~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465)
|+||.+.+. ..+...+.|+... +...+..| ++.- -.+++++++ + +++ +
T Consensus 256 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P---------~~~~----~~~ai~~Al----~--------gl~-~ 309 (428)
T 3mqd_A 256 VLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP---------SGEG----AIRCMKMAL----S--------TVT-S 309 (428)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC---------CSHH----HHHHHHHHH----T--------TCC-S
T ss_pred EEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC---------CHHH----HHHHHHHHH----h--------CCc-c
Confidence 999987421 0111112222221 11122222 2211 122333322 2 478 9
Q ss_pred CCceeeccCCchHHHHHHHH
Q 012353 240 NADYFVFHSPYNKLVQKSFA 259 (465)
Q Consensus 240 did~~~~H~p~~km~~~~~~ 259 (465)
|||++..|..++.+.+.+..
T Consensus 310 dId~ve~HgtgT~~~D~~E~ 329 (428)
T 3mqd_A 310 KIDYINPHATSTPAGDAPEI 329 (428)
T ss_dssp CCCEEECCCCSCHHHHHHHH
T ss_pred ccCEEEEeCCCCCCcCHHHH
Confidence 99999999999988776543
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-12 Score=129.90 Aligned_cols=226 Identities=14% Similarity=0.072 Sum_probs=144.0
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh---hhhcCeEEecCCCC-------------CCHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT---IGLGQECMAFCSEV-------------EDVISMSLTA 60 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~---~Gig~r~~av~~~~-------------Ed~~~la~~A 60 (465)
++|-|.++++.+|-- .+.+++.+.. |.+ + .++. .++..+.-.+.+++ .....|+++|
T Consensus 12 ~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~~~l~l~a 90 (416)
T 2wge_A 12 PSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLDMRRMSYVQRMGKLL 90 (416)
T ss_dssp CCEEEEEEEEEESSC-SSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSSCGGGGCCHHHHHHSCHHHHHHHHH
T ss_pred CcEEEEeeEEECCCC-CCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCCchhhhCCHHHHHhcCHHHHHHHHH
Confidence 469999999999998 5777765543 322 1 0111 12222222222111 1135799999
Q ss_pred HHHHHHHCCCCcCCccE----EEEEeecCCCC-----------------cc---------cHHHHHHHHhcccCCCCcee
Q 012353 61 VTNLLEKYKIDPKQIGR----LEVGSETVIDK-----------------SK---------SIKTFLMQIFEKFGNTDIEG 110 (465)
Q Consensus 61 a~~aL~~agi~~~~Id~----li~~T~s~~~~-----------------~p---------s~a~~l~~~LGl~g~~~~~~ 110 (465)
++++|+++|+ +++|. |+++|.++... .| .++.+|+..||+ +.++
T Consensus 91 a~~AL~dAG~--~~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl----~gp~ 164 (416)
T 2wge_A 91 GGQLWESAGS--PEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGA----RAGV 164 (416)
T ss_dssp HHHHHHHTTC--CCCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC----CSCE
T ss_pred HHHHHHHcCC--CccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhcc----CCCc
Confidence 9999999998 34442 78888765431 22 468899999997 2468
Q ss_pred EeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-c-----------cC---------------CCCCcccccc
Q 012353 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-Y-----------AE---------------GPARPTGGAA 163 (465)
Q Consensus 111 ~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-y-----------~~---------------~~~~~t~GdG 163 (465)
+++..+|++++.||..|..+|++|.+ +.|||+++|... . .. ..+...+|||
T Consensus 165 ~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG 242 (416)
T 2wge_A 165 MTPVSACSSGSEAIAHAWRQIVMGDA--DVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA 242 (416)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred ccccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence 99999999999999999999999977 999999999741 1 00 1123568999
Q ss_pred eeeeeecCCCC-----cccccccccccc-cCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012353 164 AVVMLVGPDAP-----VAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS 237 (465)
Q Consensus 164 A~A~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 237 (465)
|+|+||.+.+. ..+...+.++.. .+...+..| ..++. ....+++..+++. |++
T Consensus 243 aaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p-------~~~~~--------~~~~ai~~al~~a------gl~ 301 (416)
T 2wge_A 243 GALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAP-------AADGV--------RAGRAMTRSLELA------GLS 301 (416)
T ss_dssp EEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSC-------CTTCH--------HHHHHHHHHHHHH------TCC
T ss_pred eEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCC-------CCChH--------HHHHHHHHHHHHc------CCC
Confidence 99999986421 000001222211 111112222 12232 2333445555554 799
Q ss_pred CCCCceeeccCCchHHHHHHH
Q 012353 238 LSNADYFVFHSPYNKLVQKSF 258 (465)
Q Consensus 238 ~~did~~~~H~p~~km~~~~~ 258 (465)
++|||++.+|..++.+.+.+.
T Consensus 302 ~~dId~ve~HgtgT~~gD~~E 322 (416)
T 2wge_A 302 PADIDHVNAHGTATPIGDAAE 322 (416)
T ss_dssp GGGCCEEECCCCCCHHHHHHH
T ss_pred HHHCCEEEECCCCCcCCCHHH
Confidence 999999999999998776553
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-12 Score=131.04 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=142.1
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCCh----hhh-hhhhcCeEEe---cCCC---------C-CCHHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK----GKY-TIGLGQECMA---FCSE---------V-EDVISMSLTAVT 62 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~a---v~~~---------~-Ed~~~la~~Aa~ 62 (465)
++|-|.++++.+|-- .+.+++.+.. |.+. .++ ..++..+... |... . .....|+++|++
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~fd~~~~~~~~~~~~~d~~~~l~l~aa~ 80 (406)
T 2vba_A 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSME 80 (406)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEecCChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 579999999999988 5777765542 3321 111 1121111111 1110 1 125789999999
Q ss_pred HHHHHCCCCcCCccE-----EEEEeecCCC-------------C--------------cccHHHHHHHHhcccCCCCcee
Q 012353 63 NLLEKYKIDPKQIGR-----LEVGSETVID-------------K--------------SKSIKTFLMQIFEKFGNTDIEG 110 (465)
Q Consensus 63 ~aL~~agi~~~~Id~-----li~~T~s~~~-------------~--------------~ps~a~~l~~~LGl~g~~~~~~ 110 (465)
++|+++|+++++||. |+++|.++.. . ...++.+|+..||+ . .++
T Consensus 81 ~Al~dAg~~~~~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl---~-Gp~ 156 (406)
T 2vba_A 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKI---H-GVN 156 (406)
T ss_dssp HHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTC---C-SCE
T ss_pred HHHHHCCCChhHcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccC---C-Cce
Confidence 999999999988886 8888876542 1 12467889999997 2 368
Q ss_pred EeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-c-----------c-------CC--------CCCcccccc
Q 012353 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-Y-----------A-------EG--------PARPTGGAA 163 (465)
Q Consensus 111 ~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-y-----------~-------~~--------~~~~t~GdG 163 (465)
+.+..+|++++.||..|..+|++|.+ +.+||+++|... . . ++ .+...+|||
T Consensus 157 ~~v~taCsS~l~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~gEG 234 (406)
T 2vba_A 157 YSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGG 234 (406)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCE
T ss_pred eeeccchhHHHHHHHHHHHHHHcCCC--CEEEEeeeccccChHHHHHhhccccccccCCCCccccCcCcCCCCceEeece
Confidence 99999999999999999999999987 999999999752 1 0 01 123568999
Q ss_pred eeeeeecCCCC-----ccccccccccccc-CcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012353 164 AVVMLVGPDAP-----VAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS 237 (465)
Q Consensus 164 A~A~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 237 (465)
|+|+||.+.+. ..+...+.|+... +...+..| ++. ....+++..+++ ++
T Consensus 235 aaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p---------~~~--------~~~~ai~~al~~------ag-- 289 (406)
T 2vba_A 235 GGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP---------SGE--------GAVRCMKMAMHG------VD-- 289 (406)
T ss_dssp EEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSC---------CSH--------HHHHHHHHHHTT------CC--
T ss_pred EEEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCC---------CHH--------HHHHHHHHHHhh------CC--
Confidence 99999986421 0010112222221 11112222 121 222333333333 25
Q ss_pred CCCCceeeccCCchHHHHHH
Q 012353 238 LSNADYFVFHSPYNKLVQKS 257 (465)
Q Consensus 238 ~~did~~~~H~p~~km~~~~ 257 (465)
+|||++..|..++.+.+.+
T Consensus 290 -~dId~ve~HgtgT~~gD~~ 308 (406)
T 2vba_A 290 -TPIDYLNSHGTSTPVGDVK 308 (406)
T ss_dssp -SCCCEEECCCCSCHHHHHH
T ss_pred -CCccEEEeeCccCcccCHH
Confidence 8999999999999876654
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-11 Score=134.21 Aligned_cols=230 Identities=15% Similarity=0.117 Sum_probs=145.7
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CC------Chhh-hhhhhcCeEEecCC-------------CC-----CCHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GA------SKGK-YTIGLGQECMAFCS-------------EV-----EDVIS 55 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~------~~~k-~~~Gig~r~~av~~-------------~~-----Ed~~~ 55 (465)
..|-|.||++-+|...-+.+++.+.. |. +..+ +......+.-.+.+ +. .....
T Consensus 39 ~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~~~~~~~~~~l~~~~~fD~~~f~i~~~ea~~mdp~~r 118 (917)
T 2hg4_A 39 EPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEPDPDARLGGMLAAAGDFDAGFFGISPREALAMDPQQR 118 (917)
T ss_dssp CCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCCCSSCCEEBCCTTTTEECTGGGTCCHHHHHHSCHHHH
T ss_pred CCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCCCCCcceeeEecCccccChhhcCCCHHHHHhcCHHHH
Confidence 46999999999997665666654432 22 1121 10000011111111 00 12468
Q ss_pred HHHHHHHHHHHHCCCCcCCccE----EEEEeecCCCCc-------------------ccHHHHHHHHhcccCCCCceeEe
Q 012353 56 MSLTAVTNLLEKYKIDPKQIGR----LEVGSETVIDKS-------------------KSIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id~----li~~T~s~~~~~-------------------ps~a~~l~~~LGl~g~~~~~~~d 112 (465)
|+++|+.++|+++|+++++|+. |++|+.+.++.. ..++..|...||+. .+++.
T Consensus 119 l~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~----Gps~t 194 (917)
T 2hg4_A 119 IMLEISWEALERAGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLE----GPAMT 194 (917)
T ss_dssp HHHHHHHHHHHHTTCCGGGGTTSCEEEEEEECCCCCSCCTTSSCGGGGGGHHHHHCHHHHHHHHHHHHTCC----SCEEE
T ss_pred HHHHHHHHHHHHcCCChHHcCCcceEEEEEeCCchhhhhhhcCccccCcccccccccchHHHHHHHhcCCC----CCeEe
Confidence 9999999999999999999985 788887765431 13677899999982 26788
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------cc-------CC--------CCCcccccceeeeeec
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------YA-------EG--------PARPTGGAAAVVMLVG 170 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y~-------~~--------~~~~t~GdGA~A~Ll~ 170 (465)
+..+|++++.||..|...|++|.+ +.|||+++|... +. ++ .+...+||||+|+||.
T Consensus 195 v~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGv~~~~~p~~~~~~~~~~~ls~~g~~~pFd~~adG~~~gEGagavVL~ 272 (917)
T 2hg4_A 195 VDTACSSGLTALHLAMESLRRDEC--GLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQ 272 (917)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSTHHHHHHTTSSCBCTTSCCCTTBTTCCCBCBBCEEEEEEEE
T ss_pred ecCCcHHHHHHHHHHHHHHHcCCC--CEEEEeEeccccChhhhHhhhhccCcCCccccCcccccccCCCCcceEEEEEEe
Confidence 999999999999999999999977 999999999752 11 01 1124589999999997
Q ss_pred CCCC-----cccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceee
Q 012353 171 PDAP-----VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFV 245 (465)
Q Consensus 171 ~~~~-----~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~ 245 (465)
+.+. ..+...+.|+...+ |-... +...| ++ +....+++..+++. |++++|||++.
T Consensus 273 ~l~~A~~~g~~i~a~I~G~~~~~--dg~~~--~~~~P--~~--------~~q~~ai~~Al~~A------gl~p~dId~ve 332 (917)
T 2hg4_A 273 RLSAARREGRPVLAVLRGSAVNQ--DGASN--GLTAP--SG--------PAQQRVIRRALENA------GVRAGDVDYVE 332 (917)
T ss_dssp EHHHHHHTTCCCCEEEEEEEEEE--CCSCS--SSSCC--CH--------HHHHHHHHHHHHHH------TCCGGGCCEEE
T ss_pred eHHHHHhCCCCeEEEEEEEEEec--CCCcc--CCCCC--CH--------HHHHHHHHHHHHHc------CCCHHHCCEEe
Confidence 6421 00111123332211 11111 11112 11 22333444444554 79999999999
Q ss_pred ccCCchHHHHHHH
Q 012353 246 FHSPYNKLVQKSF 258 (465)
Q Consensus 246 ~H~p~~km~~~~~ 258 (465)
.|..++.+.+.+.
T Consensus 333 aHgtgT~~gD~~E 345 (917)
T 2hg4_A 333 AHGTGTRLGDPIE 345 (917)
T ss_dssp CCCCCCTTHHHHH
T ss_pred eccCCCccCcHHH
Confidence 9999998776543
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=138.50 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccE----EEEEeecCCCCc-----------------c-cHHHHHHHHhcccCCCCcee
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGR----LEVGSETVIDKS-----------------K-SIKTFLMQIFEKFGNTDIEG 110 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~T~s~~~~~-----------------p-s~a~~l~~~LGl~g~~~~~~ 110 (465)
...|+++|+.++|+++|+++++||. |++++.++++.. + .++.+|+..||+. .++
T Consensus 95 ~~rL~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~----Gps 170 (915)
T 2qo3_A 95 QQRLLLETSWELVENAGIDPHSLRGTATGVFLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLE----GPS 170 (915)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGTTBCCEEEEECCCCCTTTTCC---CTTCHHHHTTCHHHHHHHHHHHHTBC----SCE
T ss_pred HHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEecCchHHhhhcccccccccccccccccHHHHHHHHHhCCC----CCE
Confidence 4689999999999999999999994 888888766531 1 4678999999982 268
Q ss_pred EeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc----------------------cCCCCCcccccceeeee
Q 012353 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----------------------AEGPARPTGGAAAVVML 168 (465)
Q Consensus 111 ~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y----------------------~~~~~~~t~GdGA~A~L 168 (465)
+.+..+|++++.||..|..+|++|.+ +.|||+++|...- +...+...+||||+|+|
T Consensus 171 ~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGve~~~~p~~~~~~~~~~~ls~~g~~~~Fd~~adG~v~gEGagavV 248 (915)
T 2qo3_A 171 ISVDTACSSSLVALHLAVESLRKGES--SMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVL 248 (915)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SSEEEEEEECCSSTHHHHHHHTTTCBCSSCCCCTTBTTCCCBCBBCEEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHHHHcCCC--CEEEEeEehhhcCHHHHHHHhhhcccCCCCCcccccCCCCceeecCceEEEE
Confidence 88999999999999999999999977 9999999997521 01112356899999999
Q ss_pred ecCCCCc-----ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCce
Q 012353 169 VGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY 243 (465)
Q Consensus 169 l~~~~~~-----~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~ 243 (465)
|.+.+.. .+...+.|+...+ |-... +...| ++ .....+++..+++. |++++|||+
T Consensus 249 L~~~~~A~~~g~~i~a~I~G~~~~~--dg~~~--~~~~p--~~--------~~~~~~i~~Al~~A------gl~p~dId~ 308 (915)
T 2qo3_A 249 LERLSEARRNGHEVLAVVRGSALNQ--DGASN--GLSAP--SG--------PAQRRVIRQALESC------GLEPGDVDA 308 (915)
T ss_dssp EEEHHHHHHTTCCCCEEEEEEEEEE--CCSCS--STTCC--CH--------HHHHHHHHHHHHHT------TCCGGGCCE
T ss_pred EeEhHHhhhCCCCeEEEEEEEEEec--CCCcc--CCCCC--CH--------HHHHHHHHHHHHHc------CCCHHHCcE
Confidence 9864210 0101122332211 11111 00112 22 22333444455554 899999999
Q ss_pred eeccCCchHHHHHHH
Q 012353 244 FVFHSPYNKLVQKSF 258 (465)
Q Consensus 244 ~~~H~p~~km~~~~~ 258 (465)
+..|..++.+.+.+.
T Consensus 309 ve~HgtgT~~gD~~E 323 (915)
T 2qo3_A 309 VEAHGTGTALGDPIE 323 (915)
T ss_dssp EECCCCCCTTTHHHH
T ss_pred EEecCCCCccCCHHH
Confidence 999999888766553
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-11 Score=135.22 Aligned_cols=229 Identities=15% Similarity=0.181 Sum_probs=146.9
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC-----hhhhhh---hhcCeEEe------cCCC----------CCC-HHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS-----KGKYTI---GLGQECMA------FCSE----------VED-VIS 55 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~-----~~k~~~---Gig~r~~a------v~~~----------~Ed-~~~ 55 (465)
.+|-|.||++.+|.- .+.+++.+.. |.+ +.++.. +...+.-. |... .-| ...
T Consensus 4 ~~IaIvGmg~r~P~~-~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~r 82 (965)
T 3hhd_A 4 EEVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLR 82 (965)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHHH
Confidence 578999999999986 5777765543 321 111111 10011000 1000 012 356
Q ss_pred HHHHHHHHHHHHCCCCcCCcc----EEEEEeecCCC-------------------CcccHHHHHHHHhcccCCCCceeEe
Q 012353 56 MSLTAVTNLLEKYKIDPKQIG----RLEVGSETVID-------------------KSKSIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id----~li~~T~s~~~-------------------~~ps~a~~l~~~LGl~g~~~~~~~d 112 (465)
|+++|+.++|+++|+++++|+ .+++++.+.++ ..+.++..|...||+. -+++.
T Consensus 83 L~leaa~eALedAGi~~~~i~~~~~Gv~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~----GPs~t 158 (965)
T 3hhd_A 83 LLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR----GPSIA 158 (965)
T ss_dssp HHHHHHHHHHHHTTCCGGGGTTSCCEEEEEECCCHHHHHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCC----SCEEE
T ss_pred HHHHHHHHHHHHcCCChHHcCCceeEEEEeccchhHHHHHhcCccccCcccccccccchHHHHHHHHhCCC----CCeee
Confidence 999999999999999999999 78888776543 1235788999999982 26888
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c-------cCC--------CCCcccccceeeeeec
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y-------AEG--------PARPTGGAAAVVMLVG 170 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y-------~~~--------~~~~t~GdGA~A~Ll~ 170 (465)
+..||++++.||..|...|++|.+ +.|||.++|... + .++ .+...+||||+|+||.
T Consensus 159 vdtACSSsl~Al~~A~~~I~~G~~--d~aLagGv~~~~~p~~~~~~~~~~~ls~~g~~~~Fd~~adG~~~gEGagavvL~ 236 (965)
T 3hhd_A 159 LDTACSSSLMALQNAYQAIHSGQC--PAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLT 236 (965)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCCHHHHHHHHHHTCBCTTCCCCTTBTTCCSBCBBCEEEEEEEE
T ss_pred ecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccCcCCCCccccchhccCCccccceEEEEEEe
Confidence 999999999999999999999987 999999999752 0 011 1235689999999998
Q ss_pred CCCCc-ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCC
Q 012353 171 PDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSP 249 (465)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p 249 (465)
+.... .+...+.|+...+ |-.... +...|. + .....+++..+++. |++++|||++-.|-.
T Consensus 237 ~l~~A~~i~a~I~g~~~n~--dg~~~~-~~t~P~--~--------~~q~~~i~~Al~~A------gl~p~dIdyvEaHgT 297 (965)
T 3hhd_A 237 KKSLARRVYATILNAGTNT--DGFKEQ-GVTFPS--G--------DIQEQLIRSLYQSA------GVAPESFEYIEAHGT 297 (965)
T ss_dssp EGGGCSSCSEEEEEEEEEE--CCCCTT-CTTSCC--H--------HHHHHHHHHHHHHT------TCCGGGEEEEECCCC
T ss_pred cHHHcCcccEEEEeeeccC--CCCCCC-CCcCCC--H--------HHHHHHHHHHHHHh------CCCHHHhccccccCC
Confidence 75321 1111133333211 111111 111121 1 12223444444444 899999999999998
Q ss_pred chHHHHHH
Q 012353 250 YNKLVQKS 257 (465)
Q Consensus 250 ~~km~~~~ 257 (465)
++.+.+.+
T Consensus 298 gT~~gD~~ 305 (965)
T 3hhd_A 298 GTKVGDPQ 305 (965)
T ss_dssp CCTTHHHH
T ss_pred CCCCCCHH
Confidence 88776654
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=106.75 Aligned_cols=108 Identities=9% Similarity=0.017 Sum_probs=81.7
Q ss_pred hhhcCeEEecC---CCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecC------------CCCcccHHHHHHHHhc
Q 012353 37 IGLGQECMAFC---SEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETV------------IDKSKSIKTFLMQIFE 101 (465)
Q Consensus 37 ~Gig~r~~av~---~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~------------~~~~ps~a~~l~~~LG 101 (465)
+|+|+...... ....++.+|+++|++.+|+++|+++++||.+|.+.... .......+..+...||
T Consensus 23 VGvG~t~~r~~~g~~~~~s~~dL~a~Ai~~AL~dAGl~p~~Vd~vI~g~~~~~~~~~~~~~~~~~g~~~~~~~~va~~lG 102 (520)
T 4egv_A 23 VGVGQFTERIDLDGYRGMSSVELATEAAKAALHDCGADADTVARAIDTVAGTRQFEISGPASAPLGVSSNYPRSVARNIG 102 (520)
T ss_dssp EEEEEEEC--------CCCHHHHHHHHHHHHHHHTSSCHHHHHHHCCEEEECCC--------------CCHHHHHHHHHT
T ss_pred EEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHhCcCHHHcceEEEEEeecccccccchhhhhhccccCHHHHHHHHcC
Confidence 57775432111 13568999999999999999999999988776443211 1123456778999999
Q ss_pred ccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 102 l~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
+ +...++.+.++|+++..++..|+..|++|.+ +.||+++.|.+
T Consensus 103 l---~~~~~~~~~~~caSg~~av~~AA~aI~aG~a--dvvlAgG~EsM 145 (520)
T 4egv_A 103 A---DPAHAVLEVIGGQSPQHLATEFGGKIAAGEN--DVVLIFGSENT 145 (520)
T ss_dssp C---CCSEEEECCSSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred C---CCceEEEecCCCHHHHHHHHHHHHHHHcCCC--CEEEEEEEEec
Confidence 7 4467788889999999999999999999977 99999999875
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=124.73 Aligned_cols=186 Identities=9% Similarity=0.000 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCcc--------EEEEEeecCCC------------------------CcccHHHHHHH-H
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIG--------RLEVGSETVID------------------------KSKSIKTFLMQ-I 99 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id--------~li~~T~s~~~------------------------~~ps~a~~l~~-~ 99 (465)
...|++.|+.++|+++|+++++|+ .+++|+..+.. .....++.+.. .
T Consensus 2647 ~~rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~is~~~ 2726 (3089)
T 3zen_D 2647 VALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726 (3089)
T ss_dssp HHHHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTTHHHHTSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccchhhccccccHHHHHHHHHH
Confidence 578999999999999999999885 57777754210 01234556654 4
Q ss_pred hcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------c------c------------CCC
Q 012353 100 FEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y------A------------EGP 155 (465)
Q Consensus 100 LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------y------~------------~~~ 155 (465)
||+ ..+++.+..+|++++.||..|..+|++|.+ +.+||.++|... + . ++.
T Consensus 2727 lGl----~GPs~tV~tACSSsl~Al~~A~~~IrsG~~--d~aLaGGve~ls~~~~~~f~~~~als~~~~~~~~~~sp~~~ 2800 (3089)
T 3zen_D 2727 VGG----YGAMVHPVGACATAAVSVEEGVDKIKLGKA--DLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSKF 2800 (3089)
T ss_dssp TCC----CSCEECCBCTTCHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHHTCBCCHHHHHHTTCCTTTS
T ss_pred cCC----CCCceeeccchhhHHHHHHHHHHHHHCCCC--CeeEEeeecccCHHHHHHHHHhhhhhcchhhhhccCCcccc
Confidence 586 247899999999999999999999999987 999999999741 0 0 111
Q ss_pred --------CCcccccceeeeeecCCCC-----cccccccccccc-cCcccccccCCCCC-Cc-ccCCchhHHHHHHHHHH
Q 012353 156 --------ARPTGGAAAVVMLVGPDAP-----VAFESKLRGSHM-SHAYDFYKPNLASE-YP-VVDGKLSQTCYLMALDT 219 (465)
Q Consensus 156 --------~~~t~GdGA~A~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~-~p-~~dg~~s~~~y~~~~~~ 219 (465)
+..+.||||+|+||.+... ..+..-+.++.. .+-...-.|.++.. +. ..+++. .
T Consensus 2801 crpFd~~~dG~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~----------~ 2870 (3089)
T 3zen_D 2801 SRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRE----------S 2870 (3089)
T ss_dssp CCSSBTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGG----------S
T ss_pred cCccccCCCCEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHH----------H
Confidence 1234699999999987421 000000122221 11111111111100 00 011221 2
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHH
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFAR 260 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~ 260 (465)
+++..+++. |++++|||++..|..++++.+.+...
T Consensus 2871 ai~~AL~~A------Gl~p~DIdyVEaHGTGT~lgD~~E~~ 2905 (3089)
T 3zen_D 2871 TLARSLAQL------GVGADDIAVISKHDTSTLANDPNETE 2905 (3089)
T ss_dssp HHHHHHHTT------TCCGGGEEEEECCCCCCTTHHHHHHH
T ss_pred HHHHHHHHc------CCCHHHeeEEEEecCCcccccHHHHH
Confidence 334444443 89999999999999999877765443
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.9e-07 Score=101.78 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHCCCC-cCCc----c----EEEEEeecCCCC-----------------------cc-cHHHHHHH-H
Q 012353 54 ISMSLTAVTNLLEKYKID-PKQI----G----RLEVGSETVIDK-----------------------SK-SIKTFLMQ-I 99 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~-~~~I----d----~li~~T~s~~~~-----------------------~p-s~a~~l~~-~ 99 (465)
..|++.|+.+||+++|++ |.++ + .+++||..+... .+ ..+++|.. .
T Consensus 1013 qrLaLeAa~EALedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~~~v~~~~l~~~~~nt~Aa~Vs~~~ 1092 (1688)
T 2pff_A 1013 TLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLL 1092 (1688)
T ss_dssp TTHHHHHHHHHHTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSSCCCCCSTTHHHHCTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHhcCCCCcchhccccHHHHHHHHHHHH
Confidence 468999999999999997 6542 2 345555443310 12 34556666 5
Q ss_pred hcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 100 FEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 100 LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
||+ ..+++.+..||++++.||..|...|++|.+ +.+||.++|..
T Consensus 1093 LGl----~GPs~TVdtACASSL~AL~lA~~aIrsGea--DvaLVGGvE~m 1136 (1688)
T 2pff_A 1093 ISS----SGPIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDF 1136 (1688)
T ss_dssp CCC----CCCCCCCCCTTTTTHHHHHHHHHHHHTTTC--SCBCCCCCCCC
T ss_pred cCC----cCCeEEecCCCchHHHHHHHHHHHHHCCCC--CEEEEeeeccC
Confidence 776 236788899999999999999999999987 99999999974
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.8e-06 Score=101.65 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=141.6
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC-----hhhhhh---hhcCeEEecCCC-----------------CCC-HH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS-----KGKYTI---GLGQECMAFCSE-----------------VED-VI 54 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~-----~~k~~~---Gig~r~~av~~~-----------------~Ed-~~ 54 (465)
..|-|.||++-+|.- -+.+++.+.. |.+ +.++.. +.. ++..+..+ .-| ..
T Consensus 2 ~~iaI~G~~~~~p~~-~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~fd~~~f~i~~~ea~~~dpq~ 79 (2512)
T 2vz8_A 2 EEVVIAGMSGKLPES-ENLEEFWANLIGGVDMVTADDRRWKAGLYGLP-RRMGKLKDLSRFDASFFGVHSKQANTMDPQL 79 (2512)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECSSSSCTTGGGCC-SEEECCSCSSCCCTTTTTCCHHHHHTSCHHH
T ss_pred CCEEEEeeeeeCCCC-CCHHHHHHHHHcCCccccCCCcccccccccCc-ccceecCCcccCCHhhcCCCHHHHHhcCHHH
Confidence 468999999999984 5777765542 221 111111 111 11111110 012 35
Q ss_pred HHHHHHHHHHHHHCCCCcCCcc----EEEEEeecCCCC------------------cc-cHHHHHHHHhcccCCCCceeE
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIG----RLEVGSETVIDK------------------SK-SIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id----~li~~T~s~~~~------------------~p-s~a~~l~~~LGl~g~~~~~~~ 111 (465)
-|+++++.++|+++|+++++++ .|++|+.+.++. .+ ..+.+|...||+. -+++
T Consensus 80 rl~l~~~~eAle~Ag~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~----Gps~ 155 (2512)
T 2vz8_A 80 RMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFK----GPSI 155 (2512)
T ss_dssp HHHHHHHHHHHGGGTCCGGGGTTCSCEEEEEECCCHHHHHTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCC----SCEE
T ss_pred HHHHHHHHHHHHHCCCChhhcCCCCeEEEEEeccHHHHHHHhcCccccCcceecccchhHHHHHHHHHhCCC----CCce
Confidence 6899999999999999876553 466676543220 11 2677899999983 3567
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c------c-CCC--------CCcccccceeeeee
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y------A-EGP--------ARPTGGAAAVVMLV 169 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y------~-~~~--------~~~t~GdGA~A~Ll 169 (465)
.+..||++++.||..|+..|++|.+ +.+||.+++... + . ++. +....|+|++++||
T Consensus 156 tv~tACsSsl~Al~~A~~~l~~g~~--d~al~gG~~~~~~p~~~~~~~~~~~ls~~g~c~~Fd~~adG~~~gEG~~~~vL 233 (2512)
T 2vz8_A 156 TIDTACSSSLLALQSAYQAIRGGEC--SAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVLL 233 (2512)
T ss_dssp EEECTTSTHHHHHHHHHHHHHTSSC--SEEEEEEEECCCCHHHHHHHHHTTCBCTTCSCCSSSTTCCCBCBBCEEEEEEE
T ss_pred eeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeEeccccCHHHHHHHccCCCCCCCCCCCCCCCCCCCcceeeeEEEEEE
Confidence 7889999999999999999999987 999999999741 1 0 111 12457999999999
Q ss_pred cCCCC-cccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccC
Q 012353 170 GPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHS 248 (465)
Q Consensus 170 ~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~ 248 (465)
.+-.. ..+..-+.|+... .|-++.. +...| +|. ....+++..++ .+|++++||+|+-.|.
T Consensus 234 k~l~~A~~i~a~i~g~~~n--~dg~~~~-~~t~P--~~~--------~q~~~i~~al~------~ag~~p~~i~yveaHG 294 (2512)
T 2vz8_A 234 TKKSLARRVYATILNAGTN--TDGSKEQ-GVTFP--SGD--------VQEQLIRSLYA------PAGPDPESLEYIEAHG 294 (2512)
T ss_dssp EEGGGCSCCSEEEEEEEEE--ECCCCTT-CSSSC--CHH--------HHHHHHHTTSG------GGSSCTTSCCEEECCC
T ss_pred EEHHHCCcccEEEEEEEEc--CCCCCCC-CCCCC--CHH--------HHHHHHHHHHH------HcCCCHHHCCEEEeec
Confidence 87532 1121123343322 1212211 11123 221 12223333323 3489999999999999
Q ss_pred CchHHHHHHHH
Q 012353 249 PYNKLVQKSFA 259 (465)
Q Consensus 249 p~~km~~~~~~ 259 (465)
.++++.+.+-.
T Consensus 295 TgT~~gD~~E~ 305 (2512)
T 2vz8_A 295 TGTKVGDPQEL 305 (2512)
T ss_dssp CCCTTHHHHHH
T ss_pred CCCCCCCHHHH
Confidence 99988876543
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.3e-05 Score=88.13 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHCCCC-cCCc----c----EEEEEeecCC-------------------CC-----cccHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKID-PKQI----G----RLEVGSETVI-------------------DK-----SKSIKTFLMQI 99 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~-~~~I----d----~li~~T~s~~-------------------~~-----~ps~a~~l~~~ 99 (465)
..-|++.++..+|+++|++ |.++ + .+++|+..+. +. .-.++++|...
T Consensus 1186 ~~~l~L~aa~eAL~~AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~vs~~ 1265 (1878)
T 2uv9_A 1186 VTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNML 1265 (1878)
T ss_dssp HHHHHHHHHHHHHHTTTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTTCCCCSCTTGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhcCCCCchhhhcchHHHHHHHHHHH
Confidence 3568999999999999998 6652 2 4556655432 00 11356677774
Q ss_pred -hcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 100 -FEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 100 -LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
||+. -+++.+..||++++.||..|+..|++|.+ +.+||.+.|..
T Consensus 1266 ~lg~~----GP~~tv~tACASsl~Al~~A~~~I~sG~a--dvalvGGvd~~ 1310 (1878)
T 2uv9_A 1266 LLSST----GPIKTPVGACATAVESLDVGYDTIMQGKA--RVCLVGGFDDF 1310 (1878)
T ss_dssp TCCCC----CCBCCBCCGGGHHHHHHHHHHHHHTTTSC--SEEEEEEEECC
T ss_pred hcCCC----CCeEEEcCcchHHHHHHHHHHHHHHcCCC--CEEEEeeeccC
Confidence 8863 25677889999999999999999999988 99999999975
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.2e-05 Score=88.29 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHCCC-CcCC----cc----EEEEEeecCC---------C---------------CcccHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKI-DPKQ----IG----RLEVGSETVI---------D---------------KSKSIKTFLMQI 99 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi-~~~~----Id----~li~~T~s~~---------~---------------~~ps~a~~l~~~ 99 (465)
..-|++.++..+|+++|+ +|.+ |+ .+++|+..+. + ..-..+.+|...
T Consensus 1211 ~~~l~L~aa~eAL~dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~is~~ 1290 (1887)
T 2uv8_A 1211 ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNML 1290 (1887)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTTCCCCTTHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhcCCCCcchhhcchhhHHHHHHHHH
Confidence 456899999999999999 4766 22 4455655332 0 011356677774
Q ss_pred -hcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 100 -FEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 100 -LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
||+. -+++.+..||++++.||..|...|++|.+ +.+||.++|..
T Consensus 1291 ~lgl~----GP~~tv~tACASsl~Al~~A~~~I~sG~a--dvaLvGGvd~~ 1335 (1887)
T 2uv8_A 1291 LISSS----GPIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDF 1335 (1887)
T ss_dssp TTCCC----SCCCCCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred HcCCc----cceEEeecccccHHHHHHHHHHHHHcCCC--CEEEEeeeccC
Confidence 8863 25677889999999999999999999988 99999999974
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.54 Score=46.62 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee----cC-cChhHHHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS----TN-ACYGGTAALFNC 127 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di----~~-aC~gg~~AL~~A 127 (465)
.+....++++++|+++|++++|||.+++....... .. .++++||+ ...-...++ +| ++++-..+|..+
T Consensus 236 ~~~~~~~~i~~~L~~~gl~~~did~~v~~hq~~~~-~~----~~~~~lgl--~~ek~~~~~~~~~GNt~aAsipl~L~~~ 308 (357)
T 3s3l_A 236 YIDLLVAAKTQALEDAGTAIEDIAHAVIPVSRRGT-GH----ELHDLLGL--PDERTSWAYGRTTGHVGAGDQYAGLAHL 308 (357)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCSEEECCSCCCCS-SC----CHHHHHTS--CGGGBTHHHHHHHCBCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HH----HHHHHcCC--CHHHhHHHhccccccchHhHHHHHHHHH
Confidence 34556778999999999999999999963333322 22 36788997 332222233 22 333333344433
Q ss_pred HHHHHcCC-CCCCEEEEEEeccccccCCCCCcccccc--eeeeeecCC
Q 012353 128 VNWVESSS-WDGRYGLVVCTDSAVYAEGPARPTGGAA--AVVMLVGPD 172 (465)
Q Consensus 128 ~~~l~sg~-~~~~~aLVVasD~~~y~~~~~~~t~GdG--A~A~Ll~~~ 172 (465)
++.|. .+|+++|+++ ||.| ..|+||.-.
T Consensus 309 ---~~~g~l~~Gd~vll~~--------------fG~G~t~~a~ll~~~ 339 (357)
T 3s3l_A 309 ---VENALVQPGDRVLLFG--------------GGAGYTCTAAVVEIL 339 (357)
T ss_dssp ---HHTTCCCTTCEEEEEC--------------CBTTTEEEEEEEEEC
T ss_pred ---HHcCCCCCCCEEEEEE--------------EchhhhheeeeEEec
Confidence 44443 2678888887 6776 457777654
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=90.44 E-value=0.62 Score=45.91 Aligned_cols=87 Identities=21% Similarity=0.145 Sum_probs=54.4
Q ss_pred HHHHHHHHH---HHHHHHCCCCcCCccEEEEEeecCCCCcc---cHHHHHHHHhcccCCC-------CceeEeec-C---
Q 012353 53 VISMSLTAV---TNLLEKYKIDPKQIGRLEVGSETVIDKSK---SIKTFLMQIFEKFGNT-------DIEGVDST-N--- 115 (465)
Q Consensus 53 ~~~la~~Aa---~~aL~~agi~~~~Id~li~~T~s~~~~~p---s~a~~l~~~LGl~g~~-------~~~~~di~-~--- 115 (465)
-..|+-.|+ .+.|+++|++|+|+|+|+.+ |... .+...|.+++|+ .. .+..||-. +
T Consensus 202 g~amaPaA~~ti~~~l~d~g~~~~d~D~ivtg-----dL~q~g~~il~~l~~~~g~--~~~~~~~dcg~~iy~~~~~~~~ 274 (347)
T 3lma_A 202 GSAMAPAAADTIKQHLEDLGRTPDDYDLILTG-----DLSGVGSPILKDLLKEEGI--NVGTKHNDCGLMIYTPDQQVFA 274 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEE-----SCHHHHHHHHHHHHHHTTC--CCGGGEEEGGGTSSCC------
T ss_pred cccchHHHHHHHHHHHHHhCCCHHHcCEEecC-----ChHHHHHHHHHHHHHHcCC--ChhHCccccceEEecCCCcccC
Confidence 344444444 88999999999999999963 3222 234456666665 21 22334432 4
Q ss_pred -----cChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 116 -----ACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 116 -----aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
||++.+..=.+-.. |+.|.+ +++|+|++-..
T Consensus 275 ggsg~~csa~v~~~~~~~~-~~~g~~--~ril~~~tGal 310 (347)
T 3lma_A 275 GGSGCACSAVVTFAHIFKE-IEAGRL--NRVLVVATGAL 310 (347)
T ss_dssp ---CCCCHHHHHHHTHHHH-HHTTSC--SEEEEEEEEEC
T ss_pred CCCccccHHHHHHHHHHHH-HhcCcc--cEEEEEecccc
Confidence 77665544444333 778977 99999998765
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.26 E-value=1.2 Score=44.71 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCce--e--Eeec--CcChhHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE--G--VDST--NACYGGTAALFNCVNW 130 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~--~--~di~--~aC~gg~~AL~~A~~~ 130 (465)
...|++++|+++|++|+|||.+.+. |........+.+.||+. ...+. + ..++ .+|+|....+.....+
T Consensus 296 ~~~ai~~al~~agl~~~dId~ve~~-----d~fa~~~~~~~~~lg~~-~~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L 369 (395)
T 4e1l_A 296 PIPATRKALKKAGLSINDIDLIEAN-----EAFAAQALAVKNELQID-SSKLNVNGGAIALGHPIGASGARILVTLIYEM 369 (395)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCC-GGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec-----ChhHHHHHHHHHHhCCC-CCCCCcCCchhhcCCcHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999962 22334455678888861 11111 1 1122 2566555555554444
Q ss_pred HHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeec
Q 012353 131 VESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVG 170 (465)
Q Consensus 131 l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~ 170 (465)
-..+ +++.|+... .+|..+.|+||+
T Consensus 370 ~~~~---~~~gl~~~c------------~ggG~g~a~~~e 394 (395)
T 4e1l_A 370 QKRK---VETGLATLC------------IGGGQGISMVVS 394 (395)
T ss_dssp HHHT---CSEEEEEEE------------SSTTEEEEEEEE
T ss_pred HhcC---CCEEEEEEc------------cCCCceEEEEEe
Confidence 3333 377776542 245556777765
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.74 Score=46.25 Aligned_cols=95 Identities=16% Similarity=0.263 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCC-CCcee--EeecC--cChhHHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGN-TDIEG--VDSTN--ACYGGTAALFNCVNWV 131 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~-~~~~~--~di~~--aC~gg~~AL~~A~~~l 131 (465)
...|++++|+++|++|+|||.+.+. |........+.+.||+... -++.+ .-+++ +|+|....+ .+...|
T Consensus 297 ~~~a~~~al~~Agl~~~dId~ve~~-----d~f~~~~~~~~~~lg~~~~~~n~~gg~~~~GH~~gasG~~~~~-~~~~~L 370 (396)
T 4dd5_A 297 PVPATKKALEAANMTIEDIDLVEAN-----EAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILT-TLLYEM 370 (396)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCCTTSBSTTCCHHHHCCCHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec-----ChHHHHHHHHHHHhCCCCCccCCCCchhhccCcHHHHHHHHHH-HHHHHH
Confidence 4678899999999999999999952 2233444567788886210 01111 11222 444444333 334444
Q ss_pred HcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 132 ESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 132 ~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
+.. .+++.|+... .+|..++|+||++
T Consensus 371 ~~~--~~~~gl~~~c------------~ggG~g~a~~~e~ 396 (396)
T 4dd5_A 371 KRR--DAKTGLATLC------------IGGGMGTTLIVKR 396 (396)
T ss_dssp HHH--TCSEEEEEEE------------ETTTEEEEEEEEC
T ss_pred Hhc--CCCeEEEEEc------------ccCCceeEEEEeC
Confidence 444 2378877542 3455667787753
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=87.99 E-value=1.1 Score=44.92 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc--e--eEeec--CcChhHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI--E--GVDST--NACYGGTAALFNCVNW 130 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~--~--~~di~--~aC~gg~~AL~~A~~~ 130 (465)
...|++++|+++|++++|||.+.+. |.....+-.+.+.||+.. ..+ . ..-++ .+++|....+..+ .-
T Consensus 292 ~~~a~~~al~~agl~~~dId~ie~~-----d~f~~~~l~~~~~lg~~~-~~vn~~gg~~~~GHp~gAsG~~~~~~~~-~~ 364 (392)
T 2vu1_A 292 PIPASRKALERAGWKIGDLDLVEAN-----EAFAAQACAVNKDLGWDP-SIVNVNGGAIAIGHPIGASGARILNTLL-FE 364 (392)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHCCCG-GGBSTTCCHHHHCCCGGGHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec-----cccHHHHHHHHHHcCCCc-ccCCCCccHhhhCCChhhHHHHHHHHHH-HH
Confidence 3678999999999999999999963 333333444678888621 111 1 11122 2444444444444 44
Q ss_pred HHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 131 VESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 131 l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
|+.. +++++|+..+ .+|..+.|+||++
T Consensus 365 L~~~--~~~~gl~~~~------------~ggG~~~a~~~e~ 391 (392)
T 2vu1_A 365 MKRR--GARKGLATLC------------IGGGMGVAMCIES 391 (392)
T ss_dssp HHHH--TCSEEEEEEE------------ETTTEEEEEEEEC
T ss_pred Hhcc--CCCEEEEEEe------------cccchheEEEEEe
Confidence 5544 3478877432 1344556777764
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=87.52 E-value=1.3 Score=44.78 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCC-c------eeEeecCcChhHHHHHHHHHHH
Q 012353 58 LTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD-I------EGVDSTNACYGGTAALFNCVNW 130 (465)
Q Consensus 58 ~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~-~------~~~di~~aC~gg~~AL~~A~~~ 130 (465)
..|++++|+++|++++|||.+.+. +..........+.||+ ... + ..+-.-.+++|....+..+..
T Consensus 308 ~~a~~~al~~Agl~~~dId~~e~h-----daf~~~~l~~~~~lg~--~~~~vn~~Gg~~~~GHp~gasG~~~~~~~~~~- 379 (407)
T 3svk_A 308 TPATRKVLDRAGLTIDDIDLFELN-----EAFASVVLKFQKDLNI--PDEKLNVNGGAIAMGHPLGATGAMITGTMVDE- 379 (407)
T ss_dssp HHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTC--CGGGBSTTCCHHHHCBCGGGHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEe-----ChhHHHHHHHHHHhCC--CCCCCCCCCcHhheeCcHHHHHHHHHHHHHHH-
Confidence 578999999999999999999974 2222233345677886 211 1 011111244444444444444
Q ss_pred HHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 131 VESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 131 l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
|+.. ++++.|+... .+|..++|+||++
T Consensus 380 L~~~--~~~~gl~~~c------------~ggG~g~a~~~e~ 406 (407)
T 3svk_A 380 LERR--NARRALITLC------------IGGGMGVATIIER 406 (407)
T ss_dssp HHHH--TCCEEEEEEE------------CSSSCEEEEEEEE
T ss_pred HHhc--CCCEEEEEee------------ccCcceEEEEEEc
Confidence 4433 2377776442 2455567777754
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.50 E-value=2.1 Score=41.46 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCC-Cce-eEe-ecC-cChhHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIE-GVD-STN-ACYGGTAALFNCVNW 130 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~-~~~-~~d-i~~-aC~gg~~AL~~A~~~ 130 (465)
....++.+++|+++|++++|||.++...... .+--.+.+.||+ .. ++. .++ ++| .+++...+|. .+
T Consensus 224 ~~~~~~i~~aL~~agl~~~did~~~~H~~~~-----~~~d~~~~~lg~--~~~~~~~~~~~~Gnt~sAs~~~~L~---~~ 293 (331)
T 2x3e_A 224 TQMSDSVRRVLDRVGWQASDLHHLVPHQANT-----RILAAVADQLDL--PVERVVSNIAEVGNTVAASIPLALA---HG 293 (331)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEECCCCH-----HHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCH-----HHHHHHHHHcCC--CHHHHhhhHhhhCcHHHHHHHHHHH---HH
Confidence 4566788999999999999999988643221 122348889997 32 222 122 222 3333333443 33
Q ss_pred HHcCC-CCCCEEEEEE
Q 012353 131 VESSS-WDGRYGLVVC 145 (465)
Q Consensus 131 l~sg~-~~~~~aLVVa 145 (465)
++.+. .+|+++|+++
T Consensus 294 ~~~~~~~~G~~vll~~ 309 (331)
T 2x3e_A 294 LRQGILRDGGNMVLTG 309 (331)
T ss_dssp HHTTCSCTTCEEEEEE
T ss_pred HHhCCCCCCCEEEEEE
Confidence 45553 3678999887
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=86.20 E-value=2.7 Score=40.81 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--CcChhHHHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--NACYGGTAALFNCVNWV 131 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~aC~gg~~AL~~A~~~l 131 (465)
+....++++++|+++|++++|||.++...-. +.+-..+++.||+ +..-....+. ..|++...-+.++ .++
T Consensus 223 ~~~~~~~i~~~l~~~gl~~~did~~v~Hq~~-----~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sasi~~~L~-~~~ 294 (323)
T 3il3_A 223 VRELSNVVEETLLANNLDKKDLDWLVPHQAN-----LRIITATAKKLEM--DMSQVVVTLDKYANNSAATVPVALD-EAI 294 (323)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTCCEEEECCSC-----HHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHcCc--CHHHhhccHhhcCchHHHHHHHHHH-HHH
Confidence 3444567889999999999999998864332 2345578889997 3322222232 3444444333332 234
Q ss_pred HcCC-CCCCEEEEEE
Q 012353 132 ESSS-WDGRYGLVVC 145 (465)
Q Consensus 132 ~sg~-~~~~~aLVVa 145 (465)
+.|. .+|+++|+++
T Consensus 295 ~~g~~~~Gd~vll~~ 309 (323)
T 3il3_A 295 RDGRIQRGQLLLLEA 309 (323)
T ss_dssp HTTSSCTTCEEEEEE
T ss_pred HcCCCCCCCEEEEEE
Confidence 5543 3778998887
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=86.15 E-value=2.1 Score=41.92 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEee---cC-cChhHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDS---TN-ACYGGTAALFNCVN 129 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di---~~-aC~gg~~AL~~A~~ 129 (465)
....++++++|+++|++++|||.+++... .+.+-..+++.||+ +..- ....+ +| ++++-..+|..
T Consensus 249 ~~~~~~i~~~L~~~gl~~~did~~v~Hq~-----~~~i~~~~~~~Lgl--~~~~~~~~~l~~~GNtssasi~~~L~~--- 318 (350)
T 4ewp_A 249 WSMAKVAREALDAAGVEPEDLAAFIPHQA-----NMRIIDEFAKQLKL--PESVVVARDIADAGNTSAASIPLAMHR--- 318 (350)
T ss_dssp HTHHHHHHHHHHHHTCCGGGEEEEEECCS-----CHHHHHHHHHHTTC--CTTSEECCTHHHHCBCGGGHHHHHHHH---
T ss_pred HhhhHHHHHHHHhhcCChhHhceEEecCC-----CHHHHHHHHHHcCc--ChHhEEecccccccchHHHHHHHHHHH---
Confidence 44557789999999999999999886432 23445568899998 3332 22122 22 33333334433
Q ss_pred HHHcCC-CCCCEEEEEE
Q 012353 130 WVESSS-WDGRYGLVVC 145 (465)
Q Consensus 130 ~l~sg~-~~~~~aLVVa 145 (465)
+++.|. .+|+++|+++
T Consensus 319 ~~~~g~~~~Gd~vll~~ 335 (350)
T 4ewp_A 319 LLEENPELSGGLALQIG 335 (350)
T ss_dssp HHHHCGGGTTSEEEEEE
T ss_pred HHHhCCCCCcCEEEEEE
Confidence 344442 2678998887
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.13 E-value=2.2 Score=40.67 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCce-eEeecCcChhHHHHHHHHHHHHHcC
Q 012353 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVDSTNACYGGTAALFNCVNWVESS 134 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~-~~di~~aC~gg~~AL~~A~~~l~sg 134 (465)
...++.+++|+++|++++|||.++...... ..-..+.+.||+. ...+. .+.-...|.+....+.++ ..++.+
T Consensus 211 ~~~~~i~~al~~agl~~~did~~~~H~~~~-----~~~~~~~~~lg~~-~~~~~~~~~~~Gh~~~As~~~~L~-~~~~~g 283 (309)
T 2ebd_A 211 SMEEVCREVLEKAGVKPEEVSLVIPHQANV-----RIINALAEKLNIP-KEKVFVNIQKYGNTSAASIPIALH-EAIKEG 283 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEECCSCH-----HHHHHHHHHTTCC-GGGBCCCHHHHCBCGGGHHHHHHH-HHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEcCCCH-----HHHHHHHHHhCCC-HHHhhhhHhhhcchHHHHHHHHHH-HHHHcC
Confidence 456789999999999999999988643221 1223478889872 11222 111112333333333332 334444
Q ss_pred C-CCCCEEEEEE
Q 012353 135 S-WDGRYGLVVC 145 (465)
Q Consensus 135 ~-~~~~~aLVVa 145 (465)
. .+|+++|+++
T Consensus 284 ~~~~G~~~l~~~ 295 (309)
T 2ebd_A 284 KVKRGDLILMTA 295 (309)
T ss_dssp CCCTTCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 3 2678998887
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=85.97 E-value=2.8 Score=40.11 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCce-eEeecC--cChhHHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVDSTN--ACYGGTAALFNCVNWV 131 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~-~~di~~--aC~gg~~AL~~A~~~l 131 (465)
.-..++.+++|+++|++++|||.++...... ..--.+.+.||+. ..+.. .+.... .+++...+|.. ++
T Consensus 212 ~~~~~~i~~al~~agl~~~did~~~~H~~~~-----~~~d~~~~~lg~~-~~~~~~~~~~~Gh~~~as~~~~L~~---~~ 282 (313)
T 1zow_A 212 RIMGDASTRVVEKANLTSDDIDLFIPHQANI-----RIMESARERLGIS-KDKMSVSVNKYGNTSAASIPLSIDQ---EL 282 (313)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEECCSCH-----HHHHHHHHHHTCC-GGGBCCCHHHHCBCGGGHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCH-----HHHHHHHHHhCCC-HHHHHHhHhhhCchHHHHHHHHHHH---HH
Confidence 3556788999999999999999988643321 2223467888872 11222 111112 33334444433 34
Q ss_pred HcCC-CCCCEEEEEE
Q 012353 132 ESSS-WDGRYGLVVC 145 (465)
Q Consensus 132 ~sg~-~~~~~aLVVa 145 (465)
+.+. .+|+++|+++
T Consensus 283 ~~~~~~~g~~vl~~~ 297 (313)
T 1zow_A 283 KNGKLKDDDTIVLVG 297 (313)
T ss_dssp HTTCCCTTCEEEEEE
T ss_pred HcCCCCCCCEEEEEE
Confidence 5543 2678998887
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.94 E-value=1.6 Score=43.78 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++|+|||.+.+. +........+.+.||+
T Consensus 294 ~~~a~~~al~~agl~~~dId~ve~~-----d~fa~~~~~~~~~lg~ 334 (394)
T 3ss6_A 294 PAPAIRKGLEKVDWSLEDADLLEIN-----EAFAAQYLAVEKELDL 334 (394)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEeC-----CchHHHHHHHHHHhCC
Confidence 3678899999999999999999952 2223445567888886
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=85.84 E-value=2.8 Score=41.42 Aligned_cols=84 Identities=11% Similarity=-0.028 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--CcChhHHHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--NACYGGTAALFNCVNWV 131 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~aC~gg~~AL~~A~~~l 131 (465)
.....++++++|+++|++++|||.++.... .+.+-..+++.||+ +..-....+. ..|++...-+.+ ..++
T Consensus 265 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq~-----n~~i~~~~~~~Lgl--~~ek~~~~l~~~GNtssAsipl~L-~~~~ 336 (365)
T 3gwa_A 265 LAEVPRAADRLLALAGEPRENIDCFVLHQA-----NRFMLDALRKKMKI--PEHKFPVLMEHCGNTVSSTLPLAL-ETMR 336 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECCC-----CHHHHHHHHHHHTC--CGGGSCCCCTTTCBCGGGHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCC-----CHHHHHHHHHHhCC--CHHHHHHHHhcccchHHHHHHHHH-HHHH
Confidence 344557788999999999999999986432 23345678899998 3322222232 344443333322 2345
Q ss_pred HcCC-CCCCEEEEEE
Q 012353 132 ESSS-WDGRYGLVVC 145 (465)
Q Consensus 132 ~sg~-~~~~~aLVVa 145 (465)
+.|. .+|+++|+++
T Consensus 337 ~~g~~~~Gd~vll~~ 351 (365)
T 3gwa_A 337 ANGTLARGMRLMLLG 351 (365)
T ss_dssp HTTCCCTTCEEEEEE
T ss_pred HcCCCCCCCEEEEEE
Confidence 5553 3678999887
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=85.75 E-value=2.7 Score=41.11 Aligned_cols=83 Identities=5% Similarity=-0.040 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee--cCcChhHHHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS--TNACYGGTAALFNCVNWVE 132 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di--~~aC~gg~~AL~~A~~~l~ 132 (465)
....++.+++|+++|++++|||.++.... .+.+-..+++.||+ ...-....+ -..|++...-+.++. +++
T Consensus 246 ~~~~~~i~~~l~~~gl~~~did~~v~Hq~-----~~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sasi~~~L~~-~~~ 317 (345)
T 3s21_A 246 KLAQKTFVAAKQVLGWAVEELDQFVIHQV-----SRPHTAAFVKSFGI--DPAKVMTIFGEHGNIGPASVPIVLSK-LKE 317 (345)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCSEEEECCS-----CHHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeCCC-----CHHHHHHHHHHcCc--CHHHceeeHhhcCchHHHHHHHHHHH-HHH
Confidence 34456778999999999999999986432 22344568889998 332211222 133444333333322 344
Q ss_pred cCC-CCCCEEEEEE
Q 012353 133 SSS-WDGRYGLVVC 145 (465)
Q Consensus 133 sg~-~~~~~aLVVa 145 (465)
.|. .+|+++|+++
T Consensus 318 ~g~~~~Gd~vll~~ 331 (345)
T 3s21_A 318 LGRLKKGDRIALLG 331 (345)
T ss_dssp HTCCCTTCEEEEEE
T ss_pred cCCCCCCCEEEEEE
Confidence 442 3778999887
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=85.54 E-value=2.4 Score=40.73 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee----c-CcChhHHHHHHHHHHH
Q 012353 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS----T-NACYGGTAALFNCVNW 130 (465)
Q Consensus 56 la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di----~-~aC~gg~~AL~~A~~~ 130 (465)
...++.+++|+++|++++|||.++...... .+--.+.+.||+ ... ....+ + ..+++...+|. .+
T Consensus 219 ~~~~~i~~aL~~agl~~~did~v~~H~~~~-----~~~d~i~~~lg~--~~~-~~~~~~~~~Gn~~~As~~~~L~---~~ 287 (317)
T 1hnj_A 219 ELAHIVDETLAANNLDRSQLDWLVPHQANL-----RIISATAKKLGM--SMD-NVVVTLDRHGNTSAASVPCALD---EA 287 (317)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCEEEECCSCH-----HHHHHHHHHTTC--CGG-GBCCCHHHHCBCGGGHHHHHHH---HH
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEcCCCH-----HHHHHHHHHcCC--CHH-HhHhhHhhhCcHHHHHHHHHHH---HH
Confidence 456788999999999999999988643211 122357888987 222 11222 2 23333343443 33
Q ss_pred HHcCC-CCCCEEEEEE
Q 012353 131 VESSS-WDGRYGLVVC 145 (465)
Q Consensus 131 l~sg~-~~~~~aLVVa 145 (465)
++.+. .+|+++|+++
T Consensus 288 ~~~~~~~~G~~vll~~ 303 (317)
T 1hnj_A 288 VRDGRIKPGQLVLLEA 303 (317)
T ss_dssp HHTTCSCTTCEEEEEE
T ss_pred HHhCCCCCCCEEEEEE
Confidence 45543 3788999987
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=85.52 E-value=2.8 Score=40.79 Aligned_cols=83 Identities=14% Similarity=0.006 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--CcChhHHHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--NACYGGTAALFNCVNWVE 132 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~aC~gg~~AL~~A~~~l~ 132 (465)
....++.+++|+++|++++|||.++..... +.+-..+++.||+ ...-....+. ..|++...-+.+ ..+++
T Consensus 234 ~~~~~~i~~~l~~~gl~~~did~~~~Hq~~-----~~i~~~~~~~lgl--~~~~~~~~l~~~GNt~sasi~~~L-~~~~~ 305 (333)
T 4dfe_A 234 NVLEKVAVEALEKANLSAEQIDWLIPHQAN-----IRIMQSTCRKLGL--PQERMIVTVGEHGNTSAASIPLAL-DVAVR 305 (333)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEECCSC-----HHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHhCC--CHHHhhhhHHhcCchHHHHHHHHH-HHHHH
Confidence 455677889999999999999998864322 2345678889997 3322222222 233333332222 23455
Q ss_pred cCC-CCCCEEEEEE
Q 012353 133 SSS-WDGRYGLVVC 145 (465)
Q Consensus 133 sg~-~~~~~aLVVa 145 (465)
.|. .+|+++|+++
T Consensus 306 ~g~~~~Gd~vll~~ 319 (333)
T 4dfe_A 306 DGRIKRGQNVLIEG 319 (333)
T ss_dssp TTCSCTTCEEEEEE
T ss_pred cCCCCCCCEEEEEE
Confidence 553 3678898887
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=85.51 E-value=2.5 Score=42.42 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEe-------ec--CcChhHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD-------ST--NACYGGTAALFNC 127 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~d-------i~--~aC~gg~~AL~~A 127 (465)
...|++++|+++|++++|||.+.+.-. .........+.||+. .+-..+. ++ .+++|. ..+-.+
T Consensus 298 ~~~a~~~al~~Agl~~~dId~ie~hea-----fa~~~l~~~~~lg~~--~~~~~vn~~Gg~~a~GHp~gAsG~-~~~~~~ 369 (401)
T 1ulq_A 298 PVPATRKALERAGLSFSDLGLIELNEA-----FAAQALAVLREWSLS--MEDQRLNPNGGAIALGHPLGASGA-RILTTL 369 (401)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEECCS-----BHHHHHHHHHHHTCC--TTCTTBSTTCCHHHHCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEecc-----hHHHHHHHHHHcCCC--CCCCccCCCCcccccCCCcchHHH-HHHHHH
Confidence 368999999999999999999987511 111222233557751 1111111 22 234343 334444
Q ss_pred HHHHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
...|+.+ +.+++|+... .+|...+|+||++
T Consensus 370 ~~~L~~~--~~~~gl~~~~------------~ggG~~~a~v~~~ 399 (401)
T 1ulq_A 370 VHEMRRR--KVQFGLATMC------------IGVGQGIAVVVEG 399 (401)
T ss_dssp HHHHHHT--TCSEEEEEEE------------ETTTEEEEEEEEE
T ss_pred HHHHhhc--CCCEEEEEee------------cCCcccEEEEEEe
Confidence 4455555 3488887542 2444556777754
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=85.17 E-value=3.5 Score=40.04 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCC-ceeE---eecC-cChhHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD-IEGV---DSTN-ACYGGTAALFNCVN 129 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~-~~~~---di~~-aC~gg~~AL~~A~~ 129 (465)
....++.+++|+++|++++|||.++...... .+--.+.+.||+ ... -... +++| .+++...+|. .
T Consensus 231 ~~~~~~i~~aL~~agl~~~did~v~~H~~~~-----~~~d~i~~~lg~--~~~~~~~~~~~~~Gn~~sAs~~~~L~---~ 300 (339)
T 1mzj_A 231 ADVVPAAREALEVAGLTVGDLVAFVPHQANL-----RIIDVLVDRLGV--PEHVVVSRDAEDTGNTSSASVALALD---R 300 (339)
T ss_dssp HHHHHHHHHHHHTTTCCGGGCSEEEECCSCH-----HHHHHHHHHHTC--CTTSEECCTHHHHCBCTTHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCCH-----HHHHHHHHHhCC--CccceeeehhhhcCchHHHHHHHHHH---H
Confidence 4566788999999999999999988643221 122358889997 332 1111 1222 3333333443 3
Q ss_pred HHHcCC-CCCCEEEEEE
Q 012353 130 WVESSS-WDGRYGLVVC 145 (465)
Q Consensus 130 ~l~sg~-~~~~~aLVVa 145 (465)
+++.+. .+|+++|+++
T Consensus 301 ~~~~g~~~~G~~vll~~ 317 (339)
T 1mzj_A 301 LVRSGAVPGGGPALMIG 317 (339)
T ss_dssp HHHHTSSCTTCEEEEEE
T ss_pred HHHcCCCCCCCEEEEEE
Confidence 345543 2678999887
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=84.47 E-value=1.6 Score=43.67 Aligned_cols=41 Identities=7% Similarity=0.184 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++++|||.+.+. +......-.+.+.||+
T Consensus 297 ~~~a~~~al~~Agl~~~dId~ie~~-----d~f~~~~l~~~~~lg~ 337 (397)
T 1wl4_A 297 PIPAIKQAVTKAGWSLEDVDIFEIN-----EAFAAVSAAIVKELGL 337 (397)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEEEC-----CSBHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEe-----cccHHHHHHHHHHcCC
Confidence 4678999999999999999999952 2222334457788886
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.53 E-value=2.3 Score=42.41 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++|+|||.+.+.-.. ........+.||+
T Consensus 284 ~~~a~~~al~~agl~~~did~ve~h~~f-----~~~~~~~~~~lg~ 324 (387)
T 3goa_A 284 PVPASKLALKKAGLSASDIDVFEMNEAF-----AAQILPCIKDLGL 324 (387)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECCSB-----HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEeCcc-----hHHHHHHHHHhCC
Confidence 4688999999999999999999864221 1223345566775
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=83.40 E-value=3.2 Score=39.95 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCC-Cce-eEeecCcChhHHHHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIE-GVDSTNACYGGTAALFNCVNWVE 132 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~-~~~-~~di~~aC~gg~~AL~~A~~~l~ 132 (465)
....++.+++|+++|++++|||.++...... ..--.+.+.||+ .. .+. .+.....|.+....+.++ ..++
T Consensus 220 ~~~~~~i~~al~~agl~~~did~~~~H~~~~-----~~~d~~~~~lg~--~~~~~~~~~~~~Gh~~~As~~~~l~-~~l~ 291 (322)
T 1ub7_A 220 RVMNTATLEAIEKAGLTPEDIRLFVPHQANL-----RIIDAARERLGL--PWERVAVNVDRYGNTSTASIPLALK-EAVD 291 (322)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEECCSCH-----HHHHHHHHTTTC--CGGGBCCCHHHHCBCGGGHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCH-----HHHHHHHHHcCC--CHHHHHHHHHhhCcHHHHHHHHHHH-HHHH
Confidence 4566788999999999999999988643221 112247888886 22 222 111112343333333333 3345
Q ss_pred cCC-CCCCEEEEEE
Q 012353 133 SSS-WDGRYGLVVC 145 (465)
Q Consensus 133 sg~-~~~~~aLVVa 145 (465)
.+. .+|+++|+++
T Consensus 292 ~g~~~~g~~~l~~~ 305 (322)
T 1ub7_A 292 AGRIREGDHVLLVS 305 (322)
T ss_dssp HTSSCTTCEEEEEE
T ss_pred hCCCCCCCEEEEEE
Confidence 553 2678898887
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=83.18 E-value=4.3 Score=39.21 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCC-ceeEee---cC-cChhHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD-IEGVDS---TN-ACYGGTAALFNCVN 129 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~-~~~~di---~~-aC~gg~~AL~~A~~ 129 (465)
....++++++|+++|++++|||.++...... ..--.+.+.||+ ... .....+ +| .+++...+|. .
T Consensus 232 ~~~~~~i~~al~~agl~~~dId~~~~H~~~~-----~~~~~~~~~lg~--~~~~~~~~~~~~~Gnt~sAs~~~~L~---~ 301 (335)
T 1u6e_A 232 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANS-----RINELLVKNLQL--RPDAVVANDIEHTGNTSAASIPLAMA---E 301 (335)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEECCSCH-----HHHHHHHHHHTC--CTTCEECCTHHHHCBCGGGHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCCH-----HHHHHHHHHcCC--CchhhhhhhhhhhCcHHHHHHHHHHH---H
Confidence 4556788999999999999999988643321 223347888997 332 111112 22 3333333333 3
Q ss_pred HHHcCC-CCCCEEEEEE
Q 012353 130 WVESSS-WDGRYGLVVC 145 (465)
Q Consensus 130 ~l~sg~-~~~~~aLVVa 145 (465)
+++.+. .+|+++|+++
T Consensus 302 ~~~~~~~~~g~~~l~~~ 318 (335)
T 1u6e_A 302 LLTTGAAKPGDLALLIG 318 (335)
T ss_dssp HHHHTSSCTTCEEEEEE
T ss_pred HHHcCCCCCCCEEEEEE
Confidence 344442 2678999887
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=3.3 Score=40.89 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--C--cChhHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--N--ACYGGTAALFNCVN 129 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~--aC~gg~~AL~~A~~ 129 (465)
.....++++++|+++|++++|||.++...-. +.+-..+++.||+ ...-....+. . ++++-..+|..+.
T Consensus 253 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n-----~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sAsi~l~L~~~~- 324 (359)
T 3h78_A 253 SQTLVRIAGEMLAAHELTLDDIDHVICHQPN-----LRILDAVQEQLGI--PQHKFAVTVDRLGNMASASTPVTLAMFW- 324 (359)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCSEEEECCSC-----HHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHHHG-
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhCc--CHHHhhhhhhcccchHHHHHHHHHHHHH-
Confidence 3445578899999999999999998864322 3345678889998 3322222232 3 3334444444433
Q ss_pred HHHcCCCCCCEEEEEE
Q 012353 130 WVESSSWDGRYGLVVC 145 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVa 145 (465)
+. ..+|+++|+++
T Consensus 325 --~~-l~~Gd~vll~~ 337 (359)
T 3h78_A 325 --PD-IQPGQRVLVLT 337 (359)
T ss_dssp --GG-SCTTCEEEEEE
T ss_pred --Hh-CCCCCEEEEEE
Confidence 33 33779999887
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=82.73 E-value=5.4 Score=41.52 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCC----Cce--eEeecC-cChhHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT----DIE--GVDSTN-ACYGGTAALFNC 127 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~----~~~--~~di~~-aC~gg~~AL~~A 127 (465)
.-...|++++|+++|++++|||.+.+. +-.+...-...+.||+.... ++. ...+++ ..++|+.++-.+
T Consensus 317 ~~~~~a~~~al~~agl~~~did~~E~~-----dAF~~~~l~~~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~ 391 (520)
T 4egv_A 317 PASVTAVNEALRVAGIGLDDVAAFDLY-----SCFPFPVFNICDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAEA 391 (520)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEEC-----CSSSHHHHHHHHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHCCEEEEe-----CCcHHHHHHHHHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHHH
Confidence 345678999999999999999999985 33455666778889872110 110 111232 234566777777
Q ss_pred HHHHHcCCCCCCEEEEEE
Q 012353 128 VNWVESSSWDGRYGLVVC 145 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVa 145 (465)
..-|+.+ .+++.|+.+
T Consensus 392 v~~lr~~--~~~~~L~~~ 407 (520)
T 4egv_A 392 VNEMRDK--PGQFALVGA 407 (520)
T ss_dssp HHHHHHS--TTCEEEEEE
T ss_pred HHHHhcC--CCCceEEeC
Confidence 7777877 569999864
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=81.60 E-value=3 Score=41.64 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
...|++++|+++|++|+|||.+.+. +........+.+.||+
T Consensus 287 ~~~a~~~al~~Agl~~~dId~ve~~-----d~f~~~~~~~~~~lg~ 327 (390)
T 1wdk_C 287 PVPATQKALKRAGLNMADIDFIELN-----EAFAAQALPVLKDLKV 327 (390)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEEEC-----CSBHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCChhhCcEEEec-----cCCHHHHHHHHHHcCC
Confidence 3679999999999999999999853 1121233455677775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 465 | ||||
| d1xpma2 | 221 | c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co | 1e-66 | |
| d1xpma1 | 166 | c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA | 1e-30 | |
| d1teda_ | 372 | c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacte | 3e-10 | |
| d1u6ea1 | 184 | c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa | 4e-10 |
| >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Score = 211 bits (538), Expect = 1e-66
Identities = 60/275 (21%), Positives = 109/275 (39%), Gaps = 55/275 (20%)
Query: 175 VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGK 234
+A ++ YDF++P +YP+VDG LS+ Y+ + + + K
Sbjct: 2 LALNED-AVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGK---- 55
Query: 235 QFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQ 294
SL++ FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 56 --SLADFASLCFHVPFTKMGKKALESIIDNA--------DETTQERL------------- 92
Query: 295 SRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVL 354
+ + + + VGN+YT SLY +L SL+ N G+ + L
Sbjct: 93 ----------------RSGYEDAVDYNRYVGNIYTGSLYLSLISLLEN-RDLQAGETIGL 135
Query: 355 FSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRY 414
FSYGSG +S L EG+ + L L +R E + + R+
Sbjct: 136 FSYGSGSVGEFYSATLVEGYK-----DHLDQAAHKALLNNRTEVSVDAYET----FFKRF 186
Query: 415 GAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449
+F +D+ +YL+ +++ R ++ +
Sbjct: 187 DDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE 221
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Score = 114 bits (285), Expect = 1e-30
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAA--K 59
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAAL 124
D K+IG + V +E+ +D +K+ + + + ACY T A+
Sbjct: 60 DIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLL--GIQPFARCFEMKEACYAATPAI 117
Query: 125 FNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPD 172
+++ + LV+ TD+A Y PT GA AV M++ +
Sbjct: 118 QLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHN 164
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 372 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.5 bits (143), Expect = 3e-10
Identities = 42/331 (12%), Positives = 78/331 (23%), Gaps = 60/331 (18%)
Query: 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE 109
E + +++ L +IG L + + T + +
Sbjct: 89 YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGV--DVAIVKELGLSPSISR 146
Query: 110 GVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----------AEGPARPT 159
V + C AL N+V + LVVC + +
Sbjct: 147 VVVNFMGCAAAMNALGTATNYVRAHP--AMKALVVCIELCSVNAVFADDINDVVIHSLFG 204
Query: 160 GGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDT 219
G AA+V+ K+ S + V ++
Sbjct: 205 DGCAALVIGASQVQEKLEPGKVV-VRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 263
Query: 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKE 279
+ + A N L + + E +
Sbjct: 264 IFSGV----------------APVVTEMLWDNGLQISDIDLWAIHPGGP---KIIEQSVR 304
Query: 280 KLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASL 339
LG + S + + GNM + SL L ++
Sbjct: 305 SLG--------------------------ISAELAAQSWDVLARFGNMLSVSLIFVLETM 338
Query: 340 IHNKHSELDGKRVVLFSYGSGLTATMFSLKL 370
+ S V F++G G+T +
Sbjct: 339 VQQAESAKAISTGVAFAFGPGVTVEGMLFDI 369
|
| >d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 56.5 bits (135), Expect = 4e-10
Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 9/175 (5%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
A++VG+L++ Y P V + + H +S G + F ++ E SM+ A
Sbjct: 10 ARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEAC 69
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
L + I + V + T ++ + I G D + G
Sbjct: 70 RRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLG---AKGILGFDLSAGAAGFG 126
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAV----YAEGPARPTGGAAAVVMLVGPD 172
AL + + LVV T+ + A ++VG
Sbjct: 127 YALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVVGET 179
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| d1xpma2 | 221 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 100.0 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 100.0 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 100.0 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 100.0 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.98 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 99.94 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.94 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.8 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.79 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 99.79 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.79 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 99.69 | |
| d1u0ua2 | 156 | Dihydropinosylvin synthase {Scots pine (Pinus sylv | 99.52 | |
| d1ee0a2 | 160 | Pyrone synthase (PyS, chalcone synthase 2) {Gerber | 99.52 | |
| d1bi5a2 | 154 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.52 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 98.84 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.8 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.79 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 98.78 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.58 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 98.54 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 98.48 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.46 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.95 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.8 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 97.71 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 97.56 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 96.14 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 95.93 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 95.37 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 94.55 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 93.64 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 93.53 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 92.1 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 91.31 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 87.7 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 87.55 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 87.41 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 86.36 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 85.81 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 84.73 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 83.42 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 80.87 |
| >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.4e-50 Score=372.39 Aligned_cols=218 Identities=25% Similarity=0.452 Sum_probs=194.9
Q ss_pred ccccccccccccCcccccccCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHH
Q 012353 176 AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQ 255 (465)
Q Consensus 176 ~~~~~~~~~~~~~~~df~~p~~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~ 255 (465)
++++ ..++|++|++|||||. .++||+|||++|+.||++++.+||+.++++. |.+++|||++|||+||+||++
T Consensus 3 ~~~~-~~~~y~~~~~DF~rP~-~~~~pvvDG~~S~~~Yl~~l~~~~~~~~~~~------g~~~~dfd~~~fH~P~~km~~ 74 (221)
T d1xpma2 3 ALNE-DAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQ------GKSLADFASLCFHVPFTKMGK 74 (221)
T ss_dssp EECS-CCEEEECCCCSEECBT-TCSSCEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGGCSEEEECCSSHHHHH
T ss_pred EEeC-CCEeeeccCccccCCC-CCCCCeECCcchHHHHHHHHHHHHHHHHHHc------CCChhhhheEEeecCchhhHH
Confidence 4454 4789999999999998 6789999999999999999999999999887 688899999999999999999
Q ss_pred HHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHH
Q 012353 256 KSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAA 335 (465)
Q Consensus 256 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~ 335 (465)
|++++|+.+. ....++.|+++++||+.+++++|||||||+|++
T Consensus 75 ka~~~l~~~~-------------------------------------~~~~~~~~~~~~~~s~~~~~~iGN~YTaSlyl~ 117 (221)
T d1xpma2 75 KALESIIDNA-------------------------------------DETTQERLRSGYEDAVDYNRYVGNIYTGSLYLS 117 (221)
T ss_dssp HHHHTTGGGS-------------------------------------CHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHH
T ss_pred HHHHHHHhcc-------------------------------------chhhHHHHHHhhhhHHHHHHhcCCcchHHHHHH
Confidence 9999985321 024577889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeCCCCCCchhhHHhhccHHHHhccCCcCCHHHHHHHHHHHHHhcC
Q 012353 336 LASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYG 415 (465)
Q Consensus 336 L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~R~~l~~~ey~~~~~~~~~~~~ 415 (465)
|+++|++ +.+++|+||+|||||||+++++|+++|++ +++++++..++.++|++|+++++++|+++++.+ .
T Consensus 118 L~Sll~~-~~~~~G~rIglfSYGSG~~ae~fs~~V~~-----~~~~~~~~~~l~~~L~~R~~l~~~~Ye~~~~~~----~ 187 (221)
T d1xpma2 118 LISLLEN-RDLQAGETIGLFSYGSGSVGEFYSATLVE-----GYKDHLDQAAHKALLNNRTEVSVDAYETFFKRF----D 187 (221)
T ss_dssp HHHHHHH-SCCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGGCCHHHHHHHHHTCEECCHHHHHHHHHHH----H
T ss_pred HHhhhcc-ccCCCCCEEEEEEecCCcceeEEEEEEcc-----cHHHHHhhccHHHHHhCCccCCHHHHHHHHHhc----c
Confidence 9999998 67789999999999999999999999999 899999999999999999999999999998753 3
Q ss_pred CCCcccCCCCCCCCCCcEEEEeeCCCceeEeeec
Q 012353 416 AKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKK 449 (465)
Q Consensus 416 ~~~~~~~~~~~~~~~g~~~L~~v~~~~~R~Y~~~ 449 (465)
..++.|..+.....+|+|||++|++ ++|+|+|+
T Consensus 188 ~~~~~~~~~~~~~~~g~~~L~~I~~-~~R~Y~r~ 220 (221)
T d1xpma2 188 DVEFDEEQDAVHEDRHIFYLSNIEN-NVREYHRP 220 (221)
T ss_dssp TTCCCTTTTTGGGGTTSCEEEEEET-TEEEEECC
T ss_pred CCCCCCccccccCCCccEEEEEEcC-CeEEEEec
Confidence 4577888877778899999999999 56778876
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=5.5e-44 Score=362.34 Aligned_cols=311 Identities=16% Similarity=0.181 Sum_probs=237.2
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCC---Ch---hhh-----hhhhcCeEEecCCC---------------------CC
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGA---SK---GKY-----TIGLGQECMAFCSE---------------------VE 51 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~---~~---~k~-----~~Gig~r~~av~~~---------------------~E 51 (465)
...|.++++|+|++.|+|+|+++..+. ++ +|+ ++||.+|+++..+. +|
T Consensus 11 ~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e 90 (372)
T d1teda_ 11 VAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFYE 90 (372)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHHH
T ss_pred eEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHHh
Confidence 357999999999999999999887531 22 222 36999999864321 25
Q ss_pred CHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHH
Q 012353 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNW 130 (465)
Q Consensus 52 d~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~ 130 (465)
++.+||++|+++||+++|++|+|||+||++|+|+ +..|+++++|+++||+ .+.+..+++. .||+|++.||++|.++
T Consensus 91 ~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~-~~~P~~a~~v~~~LGl--~~~~~~~~~~~~gC~g~~~aL~~A~~~ 167 (372)
T d1teda_ 91 HAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGL--SPSISRVVVNFMGCAAAMNALGTATNY 167 (372)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCC-CCCchHHHHHHhhhcc--CCceeEeeccccCccHHHHHHHHHHHH
Confidence 6889999999999999999999999999999874 6799999999999998 5677788886 5999999999999999
Q ss_pred HHcCCCCCCEEEEEEeccccccC-CCC-------CcccccceeeeeecCCCCc-ccccc---ccccccc---Cccccccc
Q 012353 131 VESSSWDGRYGLVVCTDSAVYAE-GPA-------RPTGGAAAVVMLVGPDAPV-AFESK---LRGSHMS---HAYDFYKP 195 (465)
Q Consensus 131 l~sg~~~~~~aLVVasD~~~y~~-~~~-------~~t~GdGA~A~Ll~~~~~~-~~~~~---~~~~~~~---~~~df~~p 195 (465)
|++|. .++||||++|.+++.- ... ..+|||||+|+||++++.. .+... ..+.+.. +..+.+..
T Consensus 168 l~sg~--~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (372)
T d1teda_ 168 VRAHP--AMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVL 245 (372)
T ss_dssp HHHST--TCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCTTSEEE
T ss_pred HhcCC--CccceeeeehhhcccccCCCcchhhhhhhhhcccceeEEeccCCcccccCCceeEEecccccccCCCcccccc
Confidence 99995 4999999999875421 111 2579999999999987642 11111 1112111 11111100
Q ss_pred C-CCCCCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchh
Q 012353 196 N-LASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVD 274 (465)
Q Consensus 196 ~-~~~~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~ 274 (465)
. ....+..++++.......+.+.++++.++++. +++++|||+|++||++.+|++.+.++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~------gl~~~did~~i~Hq~~~~i~~~i~~~L------------- 306 (372)
T d1teda_ 246 GVNHNGITCELSENLPGYIFSGVAPVVTEMLWDN------GLQISDIDLWAIHPGGPKIIEQSVRSL------------- 306 (372)
T ss_dssp EEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHT------TCCGGGCSCEEECCSCHHHHHHHHHHH-------------
T ss_pred CCCCCcceeechHHHHHHHHHHHHHHHHHHHHhc------CCCHHHhhhhhccCccHHHHHHHHHHc-------------
Confidence 0 01113345666655555677778888887776 799999999999999999999999998
Q ss_pred hHhhhccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCC-CCEEE
Q 012353 275 EAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELD-GKRVV 353 (465)
Q Consensus 275 ~~~~~~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~-G~ril 353 (465)
|++.++.... +.++ +++|||++||+|++|.+++++ ++..+ |++++
T Consensus 307 -----------gl~~ek~~~s------~~~l----------------~~~GN~~sasip~~L~~~l~~-g~~~~g~d~vl 352 (372)
T d1teda_ 307 -----------GISAELAAQS------WDVL----------------ARFGNMLSVSLIFVLETMVQQ-AESAKAISTGV 352 (372)
T ss_dssp -----------TCCGGGGHHH------HHHH----------------HHHCBCTHHHHHHHHHHHHHS-CSSSSSSEEEE
T ss_pred -----------CCCHHHhhhh------HHHH----------------hccCCcHHHHHHHHHHHHHHh-CCCCCCCCEEE
Confidence 7777654311 1223 789999999999999999998 67655 58999
Q ss_pred EEEeccchheeeeEEEEeC
Q 012353 354 LFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 354 l~syGsG~~~~~~~~~~~~ 372 (465)
+++||+|++|+++++++..
T Consensus 353 l~~fG~G~s~~~~ll~~~~ 371 (372)
T d1teda_ 353 AFAFGPGVTVEGMLFDIIR 371 (372)
T ss_dssp EEEEETTTEEEEEEEEECC
T ss_pred EEEEcHHHhHHHHhheeec
Confidence 9999999999999999853
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.8e-35 Score=263.86 Aligned_cols=164 Identities=26% Similarity=0.439 Sum_probs=149.6
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhhhhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEee
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~ 83 (465)
.|||.++++|+|+.+|+++|+++..|.+++|+..++|.+++.+++++|++.+||++|++++|++. ++++||+||++|+
T Consensus 1 ~VgI~~~~~ylP~~~v~~~e~~~~~g~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~~--~~~~id~li~~t~ 78 (166)
T d1xpma1 1 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDE--DKKKIGMVIVATE 78 (166)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHH--HHHHEEEEEEECS
T ss_pred CeeEeEEEEECCCeEEcHHHHHHHhCCCHHHHHHhcCcEEEEeCCCccCHHHHHHHHHHhhhccc--cCCCCCeEEEecc
Confidence 48999999999999999999999999999998645555555577999999999999999999875 5789999999999
Q ss_pred cCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccccc-CCCCCccccc
Q 012353 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGA 162 (465)
Q Consensus 84 s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y~-~~~~~~t~Gd 162 (465)
++++..|+.+..++++||+ .+++.+||++++|+|++.||++|.+|++++.. +++|||++|+.++. +.+.+++|||
T Consensus 79 ~~~~~~p~~a~~v~~~lg~--~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~~--~~alvV~sd~~~~~~~~~~~~~fGD 154 (166)
T d1xpma1 79 SAVDAAKAAAVQIHNLLGI--QPFARCFEMKEACYAATPAIQLAKDYLATRPN--EKVLVIATDTARYGLNSGGEPTQGA 154 (166)
T ss_dssp SCSBSSSCHHHHHHHHTTC--CSSCEEEEEESTTTTHHHHHHHHHHHHTTCTT--CEEEEEEEEEECCCTTCSSGGGCEE
T ss_pred ccccccchhHHHHHHhhcc--ccceEEeeecccHHHHHHHHHHHhhHHhcCCC--CeEEEEEEceEeccCCCCCCccCCC
Confidence 9999999999999999998 67899999999999999999999999999954 99999999998775 4467899999
Q ss_pred ceeeeeecCCC
Q 012353 163 AAVVMLVGPDA 173 (465)
Q Consensus 163 GA~A~Ll~~~~ 173 (465)
||+|+||+++|
T Consensus 155 GA~A~ll~~~P 165 (166)
T d1xpma1 155 GAVAMVIAHNP 165 (166)
T ss_dssp EEEEEEEEESC
T ss_pred eeEEEEEecCC
Confidence 99999999987
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-33 Score=254.09 Aligned_cols=164 Identities=21% Similarity=0.240 Sum_probs=149.4
Q ss_pred ceeEEeEEEEecCCceechHHHHHhcCCChhhhh--hhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEE
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 80 (465)
|..+|.++|.|+|+.+|+++|+++..|.+++|+. +||.+|+ +++++|+..+|+++|++++|++++++|++||+||+
T Consensus 1 m~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~~Gi~~r~--~~~~~~~~~~la~~Aa~~al~~a~~~~~~Id~li~ 78 (174)
T d1hnja1 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERH--IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVV 78 (174)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEE--ECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CccEEEEEEEECCCCcccHHHHHHHhCCCHHHHHhccCcceee--ecCCCccchHHHHHHHHHhhhhcccccccccEEEE
Confidence 5689999999999999999999999999999984 6777776 55899999999999999999999999999999999
Q ss_pred EeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC---
Q 012353 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA--- 156 (465)
Q Consensus 81 ~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~--- 156 (465)
+|+++++..|+.+.+||++||+ +++.+||++++|+|++.||++|..|+++|.+ ++||||++|..+. .+..+
T Consensus 79 ~s~~~~~~~P~~a~~v~~~Lgl---~~~~~~di~~~C~g~~~al~~A~~~i~sg~~--~~~Lvv~~e~~S~~~~~~d~~~ 153 (174)
T d1hnja1 79 ATTSATHAFPSAACQIQSMLGI---KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTDRGT 153 (174)
T ss_dssp ECSCCSCSSSCHHHHHHHHHTC---CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTCHHH
T ss_pred ecCCccccccchhhhhhhccCC---CchhhhhhhhhhccHHHHHHHHHHHHhcCCc--ceeEEEeeehhhcccCCCCCCe
Confidence 9999999999999999999997 5799999999999999999999999999966 9999999999843 33333
Q ss_pred CcccccceeeeeecCCC
Q 012353 157 RPTGGAAAVVMLVGPDA 173 (465)
Q Consensus 157 ~~t~GdGA~A~Ll~~~~ 173 (465)
.++|||||+|+||++++
T Consensus 154 ~~lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 154 IIIFGDGAGAAVLAASE 170 (174)
T ss_dssp HTTBCCEEEEEEEEEES
T ss_pred EEEeceeeEEEEEEeCC
Confidence 46899999999999865
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=100.00 E-value=1.1e-32 Score=250.87 Aligned_cols=163 Identities=21% Similarity=0.227 Sum_probs=148.5
Q ss_pred eeEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEE
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 81 (465)
..+|.++|.|+|+++|+++|+++..|.+++++ ++||.+|+ ++.++|+..+|+++|++++|++++++|++||+||++
T Consensus 9 ~arI~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGi~~R~--~~~~~e~~~~ma~~Aa~~aL~~a~~~~~dId~li~~ 86 (181)
T d1mzja1 9 FSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRR--IAEPDETIQVMGVAASRRALEHAGVDPAEIDLVVVS 86 (181)
T ss_dssp EEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred ccEEEEEEEECCCceecHHHHHHHcCCCHHHHHhccCcceeh--hhccCCcHHHHhHHHHHhhhhhccCChhHCeEEEEe
Confidence 37999999999999999999999999999987 47888887 558899999999999999999999999999999999
Q ss_pred eecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-c---CCCCC
Q 012353 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-A---EGPAR 157 (465)
Q Consensus 82 T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~---~~~~~ 157 (465)
|+++++..|+.+..||++||. +++.+||++++|+|++.||++|.+|++++.. ++||||++|..+. . +....
T Consensus 87 s~~~~~~~p~~a~~v~~~l~~---~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~--~~~LvV~~e~~s~~~~~~d~~~~ 161 (181)
T d1mzja1 87 TMTNFVHTPPLSVAIAHELGA---DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLADRSLS 161 (181)
T ss_dssp CSCCCCCSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSCTTTT
T ss_pred ccCCccccccHHHHHHHhhcC---CCccceeHHhhhccHHHHHHHHhCHhhcCCC--ceeEEeeeccccccCCCCCcceE
Confidence 999999999999999999984 7899999999999999999999999999955 9999999999842 2 23345
Q ss_pred cccccceeeeeecCCC
Q 012353 158 PTGGAAAVVMLVGPDA 173 (465)
Q Consensus 158 ~t~GdGA~A~Ll~~~~ 173 (465)
++|||||+|+||++++
T Consensus 162 ~lfGDGAaA~ll~~~~ 177 (181)
T d1mzja1 162 FLFGDGAGAAVVGPSD 177 (181)
T ss_dssp TTBCEEEEEEEEEEES
T ss_pred EEeeeeeEEEEEEeCC
Confidence 7899999999999764
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=3.7e-32 Score=245.46 Aligned_cols=162 Identities=19% Similarity=0.156 Sum_probs=147.3
Q ss_pred eEEeEEEEecCCceechHHHHHhcCCChhhh--hhhhcCeEEecCCCCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEe
Q 012353 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKY--TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (465)
Q Consensus 5 vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T 82 (465)
.||.++++|+|+++|+++++++..+.+.+++ ++||.+|++ +.++|+..+|+++|++++|+++|++|+|||+||++|
T Consensus 1 sgI~~ig~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~--~~~~e~~~~ma~~Aa~~aL~~agi~~~dIdlli~~s 78 (172)
T d1ub7a1 1 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRV--AAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVAT 78 (172)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEE--CCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEEC
T ss_pred CceeEEEEECCCceEcHHHHHHHhCCCHHHHHhccCceeeee--ccccccccHHHHHHHHHHHhhcCcccccceEEEEec
Confidence 3899999999999999999999999998887 478888874 488999999999999999999999999999999999
Q ss_pred ecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc-cCCCC---Cc
Q 012353 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY-AEGPA---RP 158 (465)
Q Consensus 83 ~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~y-~~~~~---~~ 158 (465)
+|+++..|+.+.+|+++||. ++.+||++++|+|++.||++|..|++++.+ ++||||++|..+. .++.. .+
T Consensus 79 ~t~~~~~p~~a~~v~~~Lg~----~~~~~di~~~C~g~~~al~~a~~~~~~~~~--~~~Lvv~~e~~S~~~~~~d~~~~~ 152 (172)
T d1ub7a1 79 NTPDALFPDTAALVQARFGL----KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWNDRATAV 152 (172)
T ss_dssp SSCSEEESCHHHHHHHHTTC----CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTCHHHHT
T ss_pred ccccccccchHHHHHHHhcc----CccceeehhccccHHHHHHHHhhhhhcCCc--ceeEEecccccccccCCCCcCeEE
Confidence 99999999999999999984 578999999999999999999999999966 9999999999854 33333 46
Q ss_pred ccccceeeeeecCCCC
Q 012353 159 TGGAAAVVMLVGPDAP 174 (465)
Q Consensus 159 t~GdGA~A~Ll~~~~~ 174 (465)
+|||||+|+||++.+.
T Consensus 153 lfGDgAaA~ll~~~~~ 168 (172)
T d1ub7a1 153 LFGDGGGAAVVGKVRE 168 (172)
T ss_dssp TBCCEEEEEEEECCCT
T ss_pred EecceeEEEEEEEcCC
Confidence 7999999999998864
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.94 E-value=7.3e-27 Score=215.49 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=133.5
Q ss_pred EEeEEEEecCCceechHHHHHhcC----CCh--hh---h--hhhhcCeEEecCCCC---------------CCHHHHHHH
Q 012353 6 GILAMDIYFPPTCVQQEALEAHDG----ASK--GK---Y--TIGLGQECMAFCSEV---------------EDVISMSLT 59 (465)
Q Consensus 6 gI~~i~~y~P~~~v~~~~l~~~~g----~~~--~k---~--~~Gig~r~~av~~~~---------------Ed~~~la~~ 59 (465)
.|.++++|+|+++|+|+|+.+... .++ ++ + ++||.+|+++.+.++ |.+.+|+++
T Consensus 2 ~i~~~a~~~P~~~v~n~e~~e~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~ 81 (200)
T d1u0ma1 2 TLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPA 81 (200)
T ss_dssp EECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eeccceEECCCeeEcHHHHHHHHHHhCCCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999977542 122 22 2 379999997643211 358899999
Q ss_pred HHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec-CcChhHHHHHHHHHHHHHcCCCCC
Q 012353 60 AVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVESSSWDG 138 (465)
Q Consensus 60 Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~-~aC~gg~~AL~~A~~~l~sg~~~~ 138 (465)
|++++|+++|++|++||+||++|+++. ..|+.++.|+++||+ .+++..+++. +||+|++.||.+|.+|+++|..
T Consensus 82 Aa~~aL~~ag~~~~dId~lI~~s~t~~-~~P~~aa~v~~~lg~--~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~-- 156 (200)
T d1u0ma1 82 VIQRALDDAELLATDIDVIIYVSCTGF-MMPSLTAWLINEMGF--DSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPE-- 156 (200)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEECSSSC-CSSCHHHHHHHHTTC--CTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHcCCChhhhheEEEeccCCC-CcchhHHHHHHHHhc--CCCeeEeccccchhhHHHHHHHHHHHHHHhCCC--
Confidence 999999999999999999999999875 589999999999998 6789999995 7999999999999999999954
Q ss_pred CEEEEEEeccccc-cCCCC--------CcccccceeeeeecCC
Q 012353 139 RYGLVVCTDSAVY-AEGPA--------RPTGGAAAVVMLVGPD 172 (465)
Q Consensus 139 ~~aLVVasD~~~y-~~~~~--------~~t~GdGA~A~Ll~~~ 172 (465)
++||||++|.++. .+... ..+|||||+|+||+.+
T Consensus 157 ~~vLvv~~e~~S~~~~~~d~~~~~~~~~~lFgDGAaA~ll~~~ 199 (200)
T d1u0ma1 157 ANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGR 199 (200)
T ss_dssp CEEEEEEEEEGGGGCCTTCCSHHHHHHHHHBCEEEEEEEEETT
T ss_pred CEEEEEEEeccccccCCCCCChhhhhcccccccccEEEEEecC
Confidence 9999999999843 22111 2469999999999865
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.94 E-value=8.1e-27 Score=220.31 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=134.3
Q ss_pred eeEEeEEEEecCCceechHHHHHhcC----CC--h------hhh--hhhhcCeEEecCCC--------------------
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHDG----AS--K------GKY--TIGLGQECMAFCSE-------------------- 49 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~g----~~--~------~k~--~~Gig~r~~av~~~-------------------- 49 (465)
.+.|.|+|+|+|+++|+|+++.++.. .+ + .++ ++||.+|++..++.
T Consensus 16 pa~I~giGt~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T d1bi5a1 16 PATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQ 95 (235)
T ss_dssp CCEEEEEEEECCSCEEESTTHHHHHHHHTTCTTCHHHHHHHHHHHHHSCCCEEECSCCHHHHHTCHHHHSSSCSCHHHHH
T ss_pred CcEEEEEEEECCCcEEeHHHHHHHHHHhhccccchhhhhhhhhhhcccCCceeEEecChHhhccCcccccccCccHHHHH
Confidence 47899999999999999999987642 11 1 122 47999998764321
Q ss_pred ---CCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEee-cCcChhHHHHHH
Q 012353 50 ---VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS-TNACYGGTAALF 125 (465)
Q Consensus 50 ---~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di-~~aC~gg~~AL~ 125 (465)
.|...+|+++|++++|+++|+++++||+||++|+|+++ .|+.++.+++.||+ ..++..+++ +++|+|++.||+
T Consensus 96 ~~~~~~~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~~~-~p~~~a~~~~~l~~--~~~~~~~~~~~~~C~g~~~al~ 172 (235)
T d1bi5a1 96 DMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVD-MPGADYQLTKLLGL--RPYVKRYMMYQQGCFAGGTVLR 172 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCC-SSCHHHHHHHHHTC--CTTCEEEEEESCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEecccCCc-cCccHHHHHHHHhc--CCCceEEeeecCccchHHHHHH
Confidence 13578999999999999999999999999999999866 67788888888886 567766655 789999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEEecccccc-CCCC---------CcccccceeeeeecCCCC
Q 012353 126 NCVNWVESSSWDGRYGLVVCTDSAVYA-EGPA---------RPTGGAAAVVMLVGPDAP 174 (465)
Q Consensus 126 ~A~~~l~sg~~~~~~aLVVasD~~~y~-~~~~---------~~t~GdGA~A~Ll~~~~~ 174 (465)
+|.+++++|. .++||||++|.++.. +.+. ..+|||||+|+||+.+|.
T Consensus 173 ~A~~~i~~~~--~~~vLvV~~E~~S~~~~~~d~~~~~~~v~~~lFGDGA~A~vl~~~p~ 229 (235)
T d1bi5a1 173 LAKDLAENNK--GARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPV 229 (235)
T ss_dssp HHHHHHHTST--TCEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCC
T ss_pred HHHHHHHcCC--CCeEEEEEeeecceecCCCCCCchhhhcceeeeccceEEEEEecCCC
Confidence 9999999994 499999999998532 2211 136999999999998864
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.7e-19 Score=156.71 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=101.3
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhc
Q 012353 201 YPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEK 280 (465)
Q Consensus 201 ~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~ 280 (465)
+..++|+..++..++.+++++++++++. +++++|||+|++||++.++++.+.++|
T Consensus 30 ~~~m~G~~vf~~av~~~~~~i~~~L~~~------g~~~~dId~~i~Hq~~~~~~~~~~~~l------------------- 84 (143)
T d1hnja2 30 HLTMAGNEVFKVAVTELAHIVDETLAAN------NLDRSQLDWLVPHQANLRIISATAKKL------------------- 84 (143)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHHHHT------TCCGGGCCEEEECCSCHHHHHHHHHHT-------------------
T ss_pred eEEEEChHHhhhhhhhhhHHHHHHHHHh------hhcccccceEEeccCchHHHHHHHHhC-------------------
Confidence 3458998887777788888888888876 799999999999999999999999988
Q ss_pred cCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccc
Q 012353 281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360 (465)
Q Consensus 281 ~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG 360 (465)
+++.++.+. ++ +++||+++||+|++|..++++ +++++|++|+|++||+|
T Consensus 85 -----~l~~~k~~~---------~~----------------~~~GN~~sasip~~L~~~~~~-~~~~~Gd~vll~g~G~G 133 (143)
T d1hnja2 85 -----GMSMDNVVV---------TL----------------DRHGNTSAASVPCALDEAVRD-GRIKPGQLVLLEAFGGG 133 (143)
T ss_dssp -----TCCGGGBCC---------CH----------------HHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETT
T ss_pred -----ccchhhhhh---------hh----------------hhhcccccchHHHHHHHHHHh-CCCCCCCEEEEEEEehh
Confidence 788776542 33 799999999999999999999 88999999999999999
Q ss_pred hheeeeEEEE
Q 012353 361 LTATMFSLKL 370 (465)
Q Consensus 361 ~~~~~~~~~~ 370 (465)
++|++++++|
T Consensus 134 ~s~g~~llrw 143 (143)
T d1hnja2 134 FTWGSALVRF 143 (143)
T ss_dssp TEEEEEEEEC
T ss_pred hhhEEEEEEC
Confidence 9999999987
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=1.6e-19 Score=157.95 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=103.3
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhc
Q 012353 201 YPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEK 280 (465)
Q Consensus 201 ~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~ 280 (465)
+..|||+..++.-++.+++++++++++. +++++|||+|++||++.++++.+.++|
T Consensus 33 ~~~M~G~~vf~~a~~~vp~~i~~~L~~~------g~~~~dId~~i~Hqa~~~~~~~i~~~l------------------- 87 (149)
T d1ub7a2 33 RLYMNGREVFKFAVRVMNTATLEAIEKA------GLTPEDIRLFVPHQANLRIIDAARERL------------------- 87 (149)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGGCSEEEECCSCHHHHHHHHHTT-------------------
T ss_pred cEEEccHHHHHHHHHHHHHHHHHHHHhh------ccccccccEEEeeccchHHHHHHHhhc-------------------
Confidence 3458999887777888999999998887 799999999999999999999999988
Q ss_pred cCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccc
Q 012353 281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSG 360 (465)
Q Consensus 281 ~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG 360 (465)
+++.++.+. ++ .++||+++||+|++|..++++ +++++|++|+|+++|+|
T Consensus 88 -----gi~~~k~~~---------~~----------------~~~Gn~~sasip~~L~~~~~~-~~~~~Gd~vll~g~G~G 136 (149)
T d1ub7a2 88 -----GLPWERVAV---------NV----------------DRYGNTSTASIPLALKEAVDA-GRIREGDHVLLVSFGAG 136 (149)
T ss_dssp -----TCCGGGBCC---------CH----------------HHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETT
T ss_pred -----cchhhHHHH---------HH----------------HHhcCCcchhHHHHHHHHHHc-CCCCCCCEEEEEEEchH
Confidence 788776542 34 799999999999999999999 78999999999999999
Q ss_pred hheeeeEEEEeC
Q 012353 361 LTATMFSLKLSE 372 (465)
Q Consensus 361 ~~~~~~~~~~~~ 372 (465)
++|++++++|..
T Consensus 137 ~s~ga~llrw~g 148 (149)
T d1ub7a2 137 LTWAAAVLTWGG 148 (149)
T ss_dssp TEEEEEEEECCC
T ss_pred hhhEEEEEEECC
Confidence 999999999963
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.79 E-value=1.7e-19 Score=158.40 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=103.8
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhh
Q 012353 200 EYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKE 279 (465)
Q Consensus 200 ~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~ 279 (465)
.+..|||+..++.-.+.+++++++++++. +++.+|||+|++||++.+|++.+.++|
T Consensus 33 ~~~~m~G~~v~~~av~~vp~~i~~~L~~~------gl~~~dId~~i~Hq~~~~~~~~v~~~l------------------ 88 (153)
T d1mzja2 33 PALVMDGKRVFRWAVADVVPAAREALEVA------GLTVGDLVAFVPHQANLRIIDVLVDRL------------------ 88 (153)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHHHHHTT------TCCGGGCSEEEECCSCHHHHHHHHHHH------------------
T ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHh------CCCcccCCEEEEcCCcHHHHHHHHHHh------------------
Confidence 34578999887777788888888888776 799999999999999999999999988
Q ss_pred ccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEecc
Q 012353 280 KLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGS 359 (465)
Q Consensus 280 ~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGs 359 (465)
+++.++.+.. ++ +++|||++||+|++|..++++ +++++|++|+|++||+
T Consensus 89 ------gi~~ek~~~~--------~~----------------~~~GNt~Sasip~~L~~~~~~-~~~~~Gd~ill~~fG~ 137 (153)
T d1mzja2 89 ------GVPEHVVVSR--------DA----------------EDTGNTSSASVALALDRLVRS-GAVPGGGPALMIGFGA 137 (153)
T ss_dssp ------TCCTTSEECC--------TH----------------HHHCBCTTHHHHHHHHHHHHH-TSSCTTCEEEEEEEET
T ss_pred ------CCCchhcchh--------hh----------------hhcCCcccchHHHHHHHHHHc-CCCCCCCEEEEEEEch
Confidence 8888775421 23 799999999999999999998 8899999999999999
Q ss_pred chheeeeEEEEeC
Q 012353 360 GLTATMFSLKLSE 372 (465)
Q Consensus 360 G~~~~~~~~~~~~ 372 (465)
|++|++.+++|.+
T Consensus 138 G~s~~~~~l~~~~ 150 (153)
T d1mzja2 138 GLSYAGQALLLPD 150 (153)
T ss_dssp TTEEEEEEEECCC
T ss_pred hhhhhEEEEEecC
Confidence 9999999999975
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=2.7e-19 Score=156.26 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=103.4
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhh
Q 012353 200 EYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKE 279 (465)
Q Consensus 200 ~~p~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~ 279 (465)
.|..+||+..++...+.+++++++++++. +++++|||+|++||++.++++.+.++|
T Consensus 33 ~~~~m~G~~Vf~~a~~~v~~~i~~~L~~~------gl~~~dId~~i~Hqa~~~i~~~v~~~l------------------ 88 (148)
T d1u6ea2 33 PFVRLEGPAVFRWAAFKMGDVGRRAMDAA------GVRPDQIDVFVPHQANSRINELLVKNL------------------ 88 (148)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGGCCEEEECCSCHHHHHHHHHHH------------------
T ss_pred ccEEeecHHHHHHHHHHHHHHHHHHHHHc------CCCcccccEEEeccccHHHHHHHHHhc------------------
Confidence 36678999888877888899999998887 799999999999999999999999998
Q ss_pred ccCCCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEecc
Q 012353 280 KLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGS 359 (465)
Q Consensus 280 ~~~~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGs 359 (465)
++++++.+.+ .+ +++||+++||+|++|..++++ +++++|++|+|++||+
T Consensus 89 ------gl~~ek~~~~--------~~----------------~~~GNt~sasip~~L~~a~~~-g~i~~Gd~vll~gfG~ 137 (148)
T d1u6ea2 89 ------QLRPDAVVAN--------DI----------------EHTGNTSAASIPLAMAELLTT-GAAKPGDLALLIGYGA 137 (148)
T ss_dssp ------TCCTTCEECC--------TH----------------HHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEET
T ss_pred ------CCCchhhhhh--------hH----------------HhhCCCccchHHHHHHHHHHc-CCCCCCCEEEEEEEch
Confidence 8888765421 23 799999999999999999999 8899999999999999
Q ss_pred chheeeeEEEE
Q 012353 360 GLTATMFSLKL 370 (465)
Q Consensus 360 G~~~~~~~~~~ 370 (465)
|++|++.++++
T Consensus 138 G~s~~a~llrv 148 (148)
T d1u6ea2 138 GLSYAAQVVRM 148 (148)
T ss_dssp TTEEEEEEEEC
T ss_pred hhhheEEEEeC
Confidence 99999999985
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.69 E-value=3.4e-17 Score=142.72 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccc
Q 012353 214 LMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESY 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 293 (465)
++.+..++++++++. +++++|||+|++||++.++++.+.++| ++++++..
T Consensus 42 i~~~~~~i~~~l~~~------g~~~~did~~~~Hq~~~~i~~~i~~~L------------------------gl~~~k~~ 91 (148)
T d1u0ma2 42 MEPLAPALKELAGEH------GWDASDLDFYIVHAGGPRILDDLSTFL------------------------EVDPHAFR 91 (148)
T ss_dssp HHHHHHHHHHHHHTT------SCCSSCCSCCEEECSHHHHHHHHHHHS------------------------CSCGGGGH
T ss_pred HHHHHHHHHHHHHHh------CCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCChhhhh
Confidence 455556666676665 899999999999999999999999988 78877643
Q ss_pred cchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEeccchheeeeEEEEeC
Q 012353 294 QSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSE 372 (465)
Q Consensus 294 ~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~syGsG~~~~~~~~~~~~ 372 (465)
. ...++ +++|||++||+|++|..++++ +++++|++|+|++||+|+++++++++|+.
T Consensus 92 ~------s~~~l----------------~~~GN~~sasi~~~L~~~~~~-~~~~~Gd~ill~gfG~G~s~~~~llrW~~ 147 (148)
T d1u0ma2 92 F------SRATL----------------TEYGNIASAVVLDALRRLFDE-GGVEEGARGLLAGFGPGITAEMSLGCWQT 147 (148)
T ss_dssp H------HHHHH----------------HHTCBCTTHHHHHHHHHHHHS-CCCCSSCCCEEEEEETTTEEEEEEEEEEC
T ss_pred H------HHHHH----------------HhcCCCCcchHHHHHHHHHHc-CCCCCCCEEEEEEEchHhEeeEEEEEEcc
Confidence 1 11233 899999999999999999998 78899999999999999999999999974
|
| >d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Dihydropinosylvin synthase species: Scots pine (Pinus sylvestris) [TaxId: 3349]
Probab=99.52 E-value=1.1e-14 Score=127.45 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=93.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccC
Q 012353 203 VVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLG 282 (465)
Q Consensus 203 ~~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 282 (465)
.+.++.....-.+.++.++++++++. +++.+|+|+|++||++.+|++.+.++|
T Consensus 31 ~~l~~~Vp~~v~~~i~~~~~~~l~~~------~~~~~did~~i~Hqgg~~Ild~v~~~L--------------------- 83 (156)
T d1u0ua2 31 FQLKGAVPDLISANIENCMVEAFSQF------KISDWNKLFWVVHPGGRAILDRVEAKL--------------------- 83 (156)
T ss_dssp EEECTTHHHHHHHHHHHHHHHHHGGG------TCCCGGGSEEEECCSCHHHHHHHHHHH---------------------
T ss_pred EEEcchhHHHHHHHHHHHHHHHHHHc------CCChhhCceEeecCCcHHHHHHHHHHh---------------------
Confidence 34556555555577888888887765 789999999999999999999999998
Q ss_pred CCCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhc---CCC---CCCCEEEEEE
Q 012353 283 PFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNK---HSE---LDGKRVVLFS 356 (465)
Q Consensus 283 ~~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~---~~~---~~G~rill~s 356 (465)
++++++...+ ..+.+++|||+|||+|+.|..++++. +.. ..|+++++++
T Consensus 84 ---~L~~~k~~~s----------------------~~~l~~~GN~sSasip~~L~~~~~~~~~~~~~~~~~~~~~~~~~g 138 (156)
T d1u0ua2 84 ---NLDPTKLIPT----------------------RHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFG 138 (156)
T ss_dssp ---TCCTTTTHHH----------------------HHHHHHHCBCGGGHHHHHHHHHHHHHHHHTCSBSBTTBSEEEEEE
T ss_pred ---CCCcccchhh----------------------HHHHhhcCCCCcccHHHHHHHHHHhhhhccCCCcCCCCCEEEEEE
Confidence 7777754321 22227999999999999999987651 122 3469999999
Q ss_pred eccchheeeeEEEEeC
Q 012353 357 YGSGLTATMFSLKLSE 372 (465)
Q Consensus 357 yGsG~~~~~~~~~~~~ 372 (465)
||+|+++++++++..+
T Consensus 139 fG~Glt~~~~llr~~~ 154 (156)
T d1u0ua2 139 FGPGLTIETVVLKSVP 154 (156)
T ss_dssp EETTTEEEEEEEEECB
T ss_pred ECHHHhHHHHHHeeCc
Confidence 9999999999999765
|
| >d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Pyrone synthase (PyS, chalcone synthase 2) species: Gerbera hybrid cultivar [TaxId: 18101]
Probab=99.52 E-value=7.8e-15 Score=128.84 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=90.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCC
Q 012353 204 VDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGP 283 (465)
Q Consensus 204 ~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
+.++.....-.+.++.+++.++++. +++.+|+|+|++||++.+|++.+.++|
T Consensus 36 ~l~r~Vp~~~~~~v~~~v~~~l~~~------gl~~~di~~~v~Hqgg~~Ild~i~~~L---------------------- 87 (160)
T d1ee0a2 36 QLHRDVPLMVAKNIENAAEKALSPL------GITDWNSVFWMVHPGGRAILDQVERKL---------------------- 87 (160)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHGGG------TCCCGGGSEEEECCSSHHHHHHHHHHT----------------------
T ss_pred eeCchhHHHHHHHHHHHHHHHHhhc------cCCccccceEeecCCcHHHHHHHHHHc----------------------
Confidence 4466655555577888888887765 789999999999999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhc---CCCC---CCCEEEEEEe
Q 012353 284 FSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNK---HSEL---DGKRVVLFSY 357 (465)
Q Consensus 284 ~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~---~~~~---~G~rill~sy 357 (465)
+++.++.. .|+...+++|||+|||+|+.|..++++. +... .++++++++|
T Consensus 88 --~L~~~~l~----------------------~s~~vl~~yGNtSSaSI~~vL~~~~~~~~~~~~~~~g~~~d~~ll~af 143 (160)
T d1ee0a2 88 --NLKEDKLR----------------------ASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGF 143 (160)
T ss_dssp --TCCTTTTH----------------------HHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTBTTBSEEEEEEE
T ss_pred --CCCHHHHH----------------------HHHHHHHHhCCCccchHHHHHHHHHhhhhhcCCCCcCCCcCEEEEEEE
Confidence 77776542 1222238999999999999999988751 1222 2378999999
Q ss_pred ccchheeeeEEEEe
Q 012353 358 GSGLTATMFSLKLS 371 (465)
Q Consensus 358 GsG~~~~~~~~~~~ 371 (465)
|+|+++++++++-.
T Consensus 144 G~Glt~~~~llr~~ 157 (160)
T d1ee0a2 144 GPGMTVETVVLRSV 157 (160)
T ss_dssp ETTTEEEEEEEEEC
T ss_pred ChHHHHHHHHHeec
Confidence 99999999999854
|
| >d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.52 E-value=1.2e-14 Score=126.86 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=91.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCC
Q 012353 204 VDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGP 283 (465)
Q Consensus 204 ~dg~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
+.++...+...+.++.++++++++. +++.+|+|+|++||++.++++.+.++|
T Consensus 31 ~l~r~Vp~~i~~~i~~~~~~~l~~~------gl~~~di~~~v~Hqgg~~Ild~v~~~L---------------------- 82 (154)
T d1bi5a2 31 HLLKDVPGIVSKNITKALVEAFEPL------GISDYNSIFWIAHPGGPAILDQVEQKL---------------------- 82 (154)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHGGG------TCCCTTSSEEEECCSSHHHHHHHHHHH----------------------
T ss_pred ecccchHHHHHHHHHHHHHHHHHHc------CCCccccceEeeccccHHHHHHHHHHh----------------------
Confidence 3445555555577778877777665 789999999999999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhc---CCCCCC---CEEEEEEe
Q 012353 284 FSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNK---HSELDG---KRVVLFSY 357 (465)
Q Consensus 284 ~~~i~~~~~~~d~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~---~~~~~G---~rill~sy 357 (465)
++++++... |..+.+++|||+|||+|+.|..++++. +....| +++++++|
T Consensus 83 --~L~~~~~~~----------------------s~~vl~~yGN~SSasi~~vL~~~~~~~~~~~~~~~g~~~~~~~~~aF 138 (154)
T d1bi5a2 83 --ALKPEKMNA----------------------TREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGF 138 (154)
T ss_dssp --TCCGGGGHH----------------------HHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTTTTCSEEEEEEE
T ss_pred --CCCHHHHHH----------------------hHHHHHhcCCCCcccHHHHHHHHHHhhhccCCcccCCCcCEEEEEEE
Confidence 777765432 222238999999999999999988751 222233 78999999
Q ss_pred ccchheeeeEEEEeC
Q 012353 358 GSGLTATMFSLKLSE 372 (465)
Q Consensus 358 GsG~~~~~~~~~~~~ 372 (465)
|+|+++++++++..+
T Consensus 139 G~Glt~~~~llr~~~ 153 (154)
T d1bi5a2 139 GPGLTIETVVLRSVA 153 (154)
T ss_dssp ETTTEEEEEEEEECB
T ss_pred chHHhHHHHHHhcCc
Confidence 999999999998653
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=2e-08 Score=93.59 Aligned_cols=162 Identities=19% Similarity=0.206 Sum_probs=106.9
Q ss_pred eeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEecCC----C---------CCCHHHHHHHHHHH
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMAFCS----E---------VEDVISMSLTAVTN 63 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~av~~----~---------~Ed~~~la~~Aa~~ 63 (465)
.|-|.++|+..|--. +.+++.+.. |.+ + .++. .+...+...... . -....-|++.|+++
T Consensus 3 rVaItG~G~vsp~g~-~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~aa~~ 81 (249)
T d1j3na1 3 RVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQL 81 (249)
T ss_dssp CEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHHHH
T ss_pred cEEEECCEeECCCcC-CHHHHHHHHHcCCCccccCCccccccCCccccccccccccccccHHHHhhCCHHHHHHHHHHHH
Confidence 599999999999764 767665432 221 1 1110 011111100000 0 11246679999999
Q ss_pred HHHHCCCCcCCcc----EEEEEeecCCCC--------------------------cccHHHHHHHHhcccCCCCceeEee
Q 012353 64 LLEKYKIDPKQIG----RLEVGSETVIDK--------------------------SKSIKTFLMQIFEKFGNTDIEGVDS 113 (465)
Q Consensus 64 aL~~agi~~~~Id----~li~~T~s~~~~--------------------------~ps~a~~l~~~LGl~g~~~~~~~di 113 (465)
+|+++|+++++++ .|++||..+... ...++.+|+..+|+. -+++.+
T Consensus 82 Al~dAGl~~~~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~----Gp~~tv 157 (249)
T d1j3na1 82 ALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFT----GPSSTV 157 (249)
T ss_dssp HHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC----SCBCCB
T ss_pred HHHHcCCChhHcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCC----CCcccc
Confidence 9999999876543 566777544210 124667899999973 346778
Q ss_pred cCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------cc------CC---C---CC--------cccccceee
Q 012353 114 TNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------YA------EG---P---AR--------PTGGAAAVV 166 (465)
Q Consensus 114 ~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y~------~~---~---~~--------~t~GdGA~A 166 (465)
..||++++.||..|..+|++|.+ +.+||.++|... +. .. + .+ ...|+||++
T Consensus 158 ~~aCaSsl~Ai~~A~~~i~~G~~--d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~dG~v~gEGa~~ 235 (249)
T d1j3na1 158 VTACATGADALGSALRMIQLGEA--DLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGV 235 (249)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEE
T ss_pred ccccchHHHHHHHHHHHHHcCCC--CeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCCCEeeEeEEEE
Confidence 99999999999999999999988 999999999741 10 00 0 11 347999999
Q ss_pred eeecCC
Q 012353 167 MLVGPD 172 (465)
Q Consensus 167 ~Ll~~~ 172 (465)
+||++.
T Consensus 236 lvLe~~ 241 (249)
T d1j3na1 236 LVLEAY 241 (249)
T ss_dssp EEEEEH
T ss_pred EEEccH
Confidence 999864
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=1.3e-08 Score=96.34 Aligned_cols=99 Identities=8% Similarity=0.117 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCC-CcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVID-KSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~-~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
.+.++.+|+..|++.+|++++++|++||.|++|+..+.. ....++-.+.-..|+ +..+.++.|+++|.+|+.||..|
T Consensus 20 ~~~~~~dL~~~a~~~al~~~~i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGl--p~~vp~~tVn~~CaSg~~Ai~~a 97 (273)
T d1ulqa1 20 ASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF--PVEVAGCTVNRLCGSGLEAVAQA 97 (273)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCccceEEEecccchHHHHHHHH
Confidence 367899999999999999999999999999999887643 234566666666687 67899999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEeccccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAVY 151 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~y 151 (465)
...|++|.. +.+|+++.|.++.
T Consensus 98 ~~~I~~G~~--d~~lagG~EsmS~ 119 (273)
T d1ulqa1 98 ARAIWAGEG--KVYIGSGVESMSR 119 (273)
T ss_dssp HHHHHTTSC--SEEEEEEEEESSS
T ss_pred HHHHhcCCC--ccceeeeccccch
Confidence 999999966 9999999999853
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.79 E-value=1.4e-08 Score=95.85 Aligned_cols=99 Identities=7% Similarity=0.009 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~ 128 (465)
.+..+.+|+..+++.+|++++++|++||.|++|...+.-..+.++-.+.-..|+ ...+.++.+++.|.+|+.|+.+|.
T Consensus 23 ~~~~~~dL~~~~~~~~l~~~~i~~~~Id~vi~G~~~~~~~~~n~ar~~al~agl--p~~vpa~tv~~~C~Sg~~Ai~~Aa 100 (268)
T d1m3ka1 23 ANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGV--PQEATAWGMNQLAGSGLRAVALGM 100 (268)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCcEEEEeeccccCcchHHHhHHHHHhCC--cccccceeecccCcccchHHHHHH
Confidence 367899999999999999999999999999999877555566778778888887 668999999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeccccc
Q 012353 129 NWVESSSWDGRYGLVVCTDSAVY 151 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~y 151 (465)
..|++|.. +.+|+++.|.++.
T Consensus 101 ~~I~~G~~--dvvlagG~EsmS~ 121 (268)
T d1m3ka1 101 QQIATGDA--SIIVAGGMESMSM 121 (268)
T ss_dssp HHHHTTSC--SCEEEEEEEESTT
T ss_pred HHHhCCCc--eEEeecccccccc
Confidence 99999976 9999999998753
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.58 E-value=1.1e-07 Score=89.18 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHH-CCCCcCCccEEEEEeecCC-CCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHH
Q 012353 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVI-DKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (465)
Q Consensus 50 ~Ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~T~s~~-~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A 127 (465)
+..+.+|+..+++.+|++ +|++|++||.|++|...+. .....++-.+.-..|+ ...++++.|+++|.+++.|+.+|
T Consensus 27 ~~~~~dL~~~~i~~~l~r~agi~~~~Id~vi~G~v~~~~~~g~n~aR~~al~ag~--p~~vp~~tV~~~C~Sgl~Ai~~a 104 (262)
T d1wdkc1 27 NTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQI--PHTSAAQTVSRLCGSSMSALHTA 104 (262)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSS--CTTSEEEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHHHeeEEEEEeecccccccccchhhhHhhhhc--ccccchhhccccccHHHHHHHHH
Confidence 566899999999999997 7999999999999988764 3345566666656666 67899999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEEecccc
Q 012353 128 VNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 128 ~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
...|++|.. +.+|+++.|.++
T Consensus 105 a~~I~sG~~--dvvlAgGvEsmS 125 (262)
T d1wdkc1 105 AQAIMTGNG--DVFVVGGVEHMG 125 (262)
T ss_dssp HHHHHTTSC--SEEEEEEEEETT
T ss_pred HHHHHhhcC--Cceeeecccccc
Confidence 999999966 999999999874
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=98.54 E-value=8.4e-07 Score=81.98 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=106.8
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEecCCC--------------CCCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMAFCSE--------------VEDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~av~~~--------------~Ed~~~la~~Aa 61 (465)
+.|-|.+||+.+|-- .+.+++.+.. |.+ + .++. .+.........+. .....-|+..|+
T Consensus 2 ~rVaItG~G~v~p~G-~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 2 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CeEEEECCeeECCCC-CCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 578999999999988 4777765553 321 1 1121 1111111111000 112457899999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC-----------------Cc---------ccHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~-----------------~~---------ps~a~~l~~~LGl~g~~~~~~~ 111 (465)
..+|+++|++++.+. .+++++..... .. -..+..|+..||+. -+++
T Consensus 81 ~~Al~~Agl~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~----Gp~~ 156 (250)
T d1e5ma1 81 QQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAK----GPNN 156 (250)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC----SCEE
T ss_pred HHHHHHcCCChHhhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCC----CCCc
Confidence 999999999875543 35666543210 01 13577888899973 3567
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc-c---c---------cC---CC---CC--------cccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V---Y---------AE---GP---AR--------PTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~-~---y---------~~---~~---~~--------~t~GdGA 164 (465)
.+..||++++.||.+|..+|++|.. +.+||.++|.. . + .. .+ .+ ...|+||
T Consensus 157 tv~~ACsS~l~Ai~~A~~~i~~G~~--d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~dG~~~gEGa 234 (250)
T d1e5ma1 157 CTVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 234 (250)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEE
T ss_pred cccccchhhhhhhHHHhhcccCCcc--cccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCCCCEeeEeeE
Confidence 7889999999999999999999977 99999999964 1 1 00 00 12 2479999
Q ss_pred eeeeecCC
Q 012353 165 VVMLVGPD 172 (465)
Q Consensus 165 ~A~Ll~~~ 172 (465)
+++||++.
T Consensus 235 ~~~vLe~l 242 (250)
T d1e5ma1 235 GILILEEL 242 (250)
T ss_dssp EEEEEEEH
T ss_pred EEEEEeeH
Confidence 99999764
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=4e-07 Score=84.53 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=106.2
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---h-hhhh-hhhcCeEEe-cCCC-------------CCCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQECMA-FCSE-------------VEDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~a-v~~~-------------~Ed~~~la~~Aa 61 (465)
+.|-|.+||+..|-- .+.+++.+.. |.+ + ..+. .+...+... +... -....-|++.|+
T Consensus 2 rrVaItG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa 80 (250)
T d2gfva1 2 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG 80 (250)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred CeEEEECCeeECCCc-CCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence 468999999999987 4666665543 221 1 1110 111111111 1110 012467899999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC-----------------C--------cc-cHHHHHHHHhcccCCCCceeE
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKFGNTDIEGV 111 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~-----------------~--------~p-s~a~~l~~~LGl~g~~~~~~~ 111 (465)
+++|+++|+++++++ .++++|..... . .+ .++.+|...||+. -+++
T Consensus 81 ~~Al~dAg~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~----Gp~~ 156 (250)
T d2gfva1 81 VQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLR----GPSI 156 (250)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCC----SCEE
T ss_pred HHHHHhcCCCccccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCC----CCcc
Confidence 999999998776543 25566654211 0 11 3477899999972 3567
Q ss_pred eecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c------cCC---C---CC--------cccccce
Q 012353 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y------AEG---P---AR--------PTGGAAA 164 (465)
Q Consensus 112 di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y------~~~---~---~~--------~t~GdGA 164 (465)
.+..+|++++.||..|..+|++|.+ +.+||.++|... + ... + .+ ...|+||
T Consensus 157 tv~~aCaSg~~Ai~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGa 234 (250)
T d2gfva1 157 SIATAQTSGVHNIGHAARIIAYGDA--DVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGA 234 (250)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEE
T ss_pred ccccccchhhhhhHHHHHHHHcCCc--chhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCCCCEeeeeEE
Confidence 7889999999999999999999977 999999999641 1 000 0 12 3579999
Q ss_pred eeeeecCC
Q 012353 165 VVMLVGPD 172 (465)
Q Consensus 165 ~A~Ll~~~ 172 (465)
+++||++.
T Consensus 235 a~lVLE~~ 242 (250)
T d2gfva1 235 GMLVLEEY 242 (250)
T ss_dssp EEEEEEEH
T ss_pred EEEEECcH
Confidence 99999764
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=3e-07 Score=86.51 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHHHC----CCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeecCcChhHHHHH
Q 012353 49 EVEDVISMSLTAVTNLLEKY----KIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAAL 124 (465)
Q Consensus 49 ~~Ed~~~la~~Aa~~aL~~a----gi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL 124 (465)
.+..+.+|+..+++.+|+++ +++|++||.|++|+..+.-.....+-.+.-..|+ +..++++.|++.|.+++.||
T Consensus 31 ~~~~~~~L~~~~i~~~l~r~~~~~~idp~~Id~vi~G~v~~~g~~~~~aR~~al~agl--p~~vpa~tVnr~CaSg~~Ai 108 (269)
T d1afwa1 31 KDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGI--PYSTPFVALNRQCSSGLTAV 108 (269)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCccccCChhhcCEEEeccccccccccccchhhhhhccc--cccccchhccccchHHHHHH
Confidence 36779999999999999876 6999999999999876543333445555556676 67899999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEEEecccc
Q 012353 125 FNCVNWVESSSWDGRYGLVVCTDSAV 150 (465)
Q Consensus 125 ~~A~~~l~sg~~~~~~aLVVasD~~~ 150 (465)
..|...|++|.. +.+|+++.|.++
T Consensus 109 ~~Aa~~I~~G~~--divlagG~EsmS 132 (269)
T d1afwa1 109 NDIANKIKVGQI--DIGLALGVESMT 132 (269)
T ss_dssp HHHHHHHHTTSC--SEEEEEEEEEHH
T ss_pred HHHHHHHhhccc--cceeeeeccccc
Confidence 999999999966 999999999874
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.95 E-value=1.3e-05 Score=72.14 Aligned_cols=140 Identities=13% Similarity=0.146 Sum_probs=92.5
Q ss_pred ceeEEeEEEEecCCceechHHHHHhc--CCC---------hhhhhhhhcCeE------EecC----CCCCCHHHHHHHHH
Q 012353 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---------KGKYTIGLGQEC------MAFC----SEVEDVISMSLTAV 61 (465)
Q Consensus 3 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---------~~k~~~Gig~r~------~av~----~~~Ed~~~la~~Aa 61 (465)
+.|-|.|||+.+|--. +.+++.+.. |.+ +..+..+++... ..++ ..-....-|++.|+
T Consensus 1 rRVvItG~G~v~p~G~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa 79 (216)
T d1tqya1 1 RRVVITGVGVRAPGGN-GTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACA 79 (216)
T ss_dssp CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHH
T ss_pred CeEEEEeceeECCCCC-CHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHH
Confidence 3588999999999874 666665442 321 122211111000 0000 00123678999999
Q ss_pred HHHHHHCCCCcCCcc----EEEEEeecCCC---------------------------C----cc-cHHHHHHHHhcccCC
Q 012353 62 TNLLEKYKIDPKQIG----RLEVGSETVID---------------------------K----SK-SIKTFLMQIFEKFGN 105 (465)
Q Consensus 62 ~~aL~~agi~~~~Id----~li~~T~s~~~---------------------------~----~p-s~a~~l~~~LGl~g~ 105 (465)
++||+++|+++++++ .++++++.+.. . .| .++..+...+|+.
T Consensus 80 ~~Al~dAg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~-- 157 (216)
T d1tqya1 80 REAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE-- 157 (216)
T ss_dssp HHHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC--
T ss_pred HHHHHHhcCCccccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCcc--
Confidence 999999999876654 24444433210 0 11 2467889999973
Q ss_pred CCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 106 TDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 106 ~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
-+.+-+..||++++.||..|..+|++|.+ +.+||.++|..
T Consensus 158 --Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~--d~~ivGG~d~~ 197 (216)
T d1tqya1 158 --GPVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTP 197 (216)
T ss_dssp --SCEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred --ccceeeccccchHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 34677899999999999999999999988 99999999964
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.80 E-value=2.8e-05 Score=69.34 Aligned_cols=138 Identities=14% Similarity=0.008 Sum_probs=91.6
Q ss_pred eeEEeEEEEecCCceechHHHHHhc--C---CCh-hhh-hhhhcCeEEecC---------CCC-----CCHHHHHHHHHH
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHD--G---ASK-GKY-TIGLGQECMAFC---------SEV-----EDVISMSLTAVT 62 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~--g---~~~-~k~-~~Gig~r~~av~---------~~~-----Ed~~~la~~Aa~ 62 (465)
.|-|.+||+..|--. +.+++.+.. | +.+ .++ ..+...+..... ++. ....-|++.|+.
T Consensus 1 ~VvITG~G~vsp~g~-~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 79 (208)
T d1tqyb1 1 SVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAAD 79 (208)
T ss_dssp CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHH
T ss_pred CEEEEcceeECCCcC-CHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhcccccccccccccc
Confidence 378999999999866 666654432 2 211 111 011111111100 111 124679999999
Q ss_pred HHHHHCCCCcCCcc----EEEEEeecCCC-----------------C--------cc-cHHHHHHHHhcccCCCCceeEe
Q 012353 63 NLLEKYKIDPKQIG----RLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKFGNTDIEGVD 112 (465)
Q Consensus 63 ~aL~~agi~~~~Id----~li~~T~s~~~-----------------~--------~p-s~a~~l~~~LGl~g~~~~~~~d 112 (465)
++|+++|+++++++ .+++++..+.. . .+ ..+..|...||+.| +++-
T Consensus 80 ~Al~~Ag~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~G----p~~t 155 (208)
T d1tqyb1 80 WALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRG----PSSA 155 (208)
T ss_dssp HHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCS----SCEE
T ss_pred ccchhhhcccccccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhcccccc----eeee
Confidence 99999999987764 46667654311 0 12 34678999999832 4566
Q ss_pred ecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEeccc
Q 012353 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (465)
Q Consensus 113 i~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~ 149 (465)
+..||++++.||..|.++|++| . +.+||.++|..
T Consensus 156 v~tACaS~l~Ai~~A~~~I~~G-~--d~~lvGG~d~~ 189 (208)
T d1tqyb1 156 LVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDSA 189 (208)
T ss_dssp EECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEECC
T ss_pred ccccccHHHHHHHHHHHHHHcC-C--CEEEECccccc
Confidence 7899999999999999999999 7 89999999963
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=97.71 E-value=4.6e-05 Score=70.34 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=59.6
Q ss_pred cHHHHHHHHhcccCCCCceeEeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc-------c------cC-C--
Q 012353 91 SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y------AE-G-- 154 (465)
Q Consensus 91 s~a~~l~~~LGl~g~~~~~~~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~-------y------~~-~-- 154 (465)
.++.+|...||+. -+++.+..||++++.||..|..+|++|.+ +.+||.++|... + .. .
T Consensus 157 ~~a~~is~~~~l~----Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~--d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~ 230 (270)
T d2ix4a1 157 MASGHVSMKYGFQ----GPNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESSIDALSVAGFSRSRALSTKFNS 230 (270)
T ss_dssp HHHHHHHHHHTCC----SCEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCTTTT
T ss_pred hhHHHHHHHhCCC----CCCcccccccchhhHHHHHHHHHHHcCCC--CeeccccchhhhhhhhHHHHHhcccccCCCCC
Confidence 3577899999973 34677899999999999999999999987 999999998741 0 00 0
Q ss_pred -C---CC--------cccccceeeeeecCC
Q 012353 155 -P---AR--------PTGGAAAVVMLVGPD 172 (465)
Q Consensus 155 -~---~~--------~t~GdGA~A~Ll~~~ 172 (465)
+ .+ ...|+||+++||.+.
T Consensus 231 ~p~~~~rPFD~~a~G~v~gEGaa~~vLe~l 260 (270)
T d2ix4a1 231 SPQEASRPFDCDRDGFVIGEGSGVIVLEEY 260 (270)
T ss_dssp CGGGSCCTTBTTCCSBCBBCEEEEEEEEEH
T ss_pred CCCCccCCCCCCCCCEeeEeeEEEEEEeeH
Confidence 0 12 357999999999874
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.0001 Score=67.50 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=101.1
Q ss_pred eeEEeEEEEecCCceechHHHHHhc--CCC---h-hhh-hhhhcCeEEec----CCC---------CCCHHHHHHHHHHH
Q 012353 4 NVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKY-TIGLGQECMAF----CSE---------VEDVISMSLTAVTN 63 (465)
Q Consensus 4 ~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~-~~Gig~r~~av----~~~---------~Ed~~~la~~Aa~~ 63 (465)
.|-|.+||+..|--. +.+++.+.. |.+ + .++ ..+........ ... .....-++..++..
T Consensus 3 RVvITG~G~i~p~G~-~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T d2vbaa1 3 RAVITGLGIVSSIGN-NQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQ 81 (253)
T ss_dssp CEEEEEEEEEBTTBS-SHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred cEEEEccEEECCCCC-CHHHHHHHHHcCCCccccCCccccccCcccccccccccccccccchhhccchhhhhhhhHHHHH
Confidence 599999999998876 566654432 332 1 112 11221111110 011 11245588889999
Q ss_pred HHHHCCCCc------CCccEEEEEeecCC-------------CC--------------cccHHHHHHHHhcccCCCCcee
Q 012353 64 LLEKYKIDP------KQIGRLEVGSETVI-------------DK--------------SKSIKTFLMQIFEKFGNTDIEG 110 (465)
Q Consensus 64 aL~~agi~~------~~Id~li~~T~s~~-------------~~--------------~ps~a~~l~~~LGl~g~~~~~~ 110 (465)
++..+++.. +.++ +++++..+. .. .-.++..|...+|+. -+.
T Consensus 82 a~~~~~l~~~~~~~~~r~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~----Gp~ 156 (253)
T d2vbaa1 82 AIADAGLSPEAYQNNPRVG-LIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIH----GVN 156 (253)
T ss_dssp HHHHHTCCHHHHTTCTTEE-EEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCC----SCE
T ss_pred HHHHhhccchhccCCCCEE-EEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCcc----cce
Confidence 999988763 2343 445544321 00 113566788888872 346
Q ss_pred EeecCcChhHHHHHHHHHHHHHcCCCCCCEEEEEEecccc------c-c---------CCC---CC--------cccccc
Q 012353 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y-A---------EGP---AR--------PTGGAA 163 (465)
Q Consensus 111 ~di~~aC~gg~~AL~~A~~~l~sg~~~~~~aLVVasD~~~------y-~---------~~~---~~--------~t~GdG 163 (465)
+-+..+|++++.||..|..+|++|.+ +.+||.++|... + . ..| .+ ...|.|
T Consensus 157 ~~i~taCaSsl~Ai~~A~~~i~~G~~--d~alvgg~~~~~~~~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~gEG 234 (253)
T d2vbaa1 157 YSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGG 234 (253)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCE
T ss_pred eeeeccchhHHHHHHHHHHhcchhcc--ceeeecchhhhhcchhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeeeeE
Confidence 67789999999999999999999977 899999998751 1 0 001 12 357999
Q ss_pred eeeeeecCC
Q 012353 164 AVVMLVGPD 172 (465)
Q Consensus 164 A~A~Ll~~~ 172 (465)
|+++||++-
T Consensus 235 a~~lvLe~l 243 (253)
T d2vbaa1 235 GGMVVVEEL 243 (253)
T ss_dssp EEEEEEEEH
T ss_pred EEEEEEccH
Confidence 999999864
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=96.14 E-value=0.025 Score=47.25 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCc-eeEeec--CcChhHHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDST--NACYGGTAALFNCVNW 130 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~-~~~di~--~aC~gg~~AL~~A~~~ 130 (465)
+....++++++|+++|++++|||.+++... .+.+-..+++.||+ +.+- ....+. ..|++.+.-+.+ ..+
T Consensus 47 v~~vp~~i~~~L~~~gl~~~dId~~i~Hq~-----~~~~~~~v~~~lgi--~~ek~~~~~~~~~GNt~Sasip~~L-~~~ 118 (153)
T d1mzja2 47 VADVVPAAREALEVAGLTVGDLVAFVPHQA-----NLRIIDVLVDRLGV--PEHVVVSRDAEDTGNTSSASVALAL-DRL 118 (153)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGCSEEEECCS-----CHHHHHHHHHHHTC--CTTSEECCTHHHHCBCTTHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCCEEEEcCC-----cHHHHHHHHHHhCC--CchhcchhhhhhcCCcccchHHHHH-HHH
Confidence 455556888999999999999999997432 34566778999998 3332 222232 235554333332 234
Q ss_pred HHcCC-CCCCEEEEEEeccccccCCCCCcccccc---eeeeeecCCC
Q 012353 131 VESSS-WDGRYGLVVCTDSAVYAEGPARPTGGAA---AVVMLVGPDA 173 (465)
Q Consensus 131 l~sg~-~~~~~aLVVasD~~~y~~~~~~~t~GdG---A~A~Ll~~~~ 173 (465)
++.+. -+|+++|+++ ||.| ++|+|.=+.+
T Consensus 119 ~~~~~~~~Gd~ill~~--------------fG~G~s~~~~~l~~~~~ 151 (153)
T d1mzja2 119 VRSGAVPGGGPALMIG--------------FGAGLSYAGQALLLPDP 151 (153)
T ss_dssp HHHTSSCTTCEEEEEE--------------EETTTEEEEEEEECCCC
T ss_pred HHcCCCCCCCEEEEEE--------------EchhhhhhEEEEEecCC
Confidence 44442 3678998887 6777 5555555544
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=95.93 E-value=0.017 Score=48.11 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--CcChhHHHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--NACYGGTAALFNCVNWV 131 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~aC~gg~~AL~~A~~~l 131 (465)
+.....+++++|+++|++++|||.++.. ...+..-..+.++||+ .++-....+. ..|.+...-+.+. ..+
T Consensus 46 ~~~vp~~i~~~L~~~g~~~~dId~~i~H-----qa~~~~~~~i~~~lgi--~~~k~~~~~~~~Gn~~sasip~~L~-~~~ 117 (149)
T d1ub7a2 46 VRVMNTATLEAIEKAGLTPEDIRLFVPH-----QANLRIIDAARERLGL--PWERVAVNVDRYGNTSTASIPLALK-EAV 117 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEEC-----CSCHHHHHHHHHTTTC--CGGGBCCCHHHHCBCGGGHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhhccccccccEEEee-----ccchHHHHHHHhhccc--hhhHHHHHHHHhcCCcchhHHHHHH-HHH
Confidence 3455678899999999999999999864 2344566778899997 3332222232 2333333333333 344
Q ss_pred HcCC-CCCCEEEEEE
Q 012353 132 ESSS-WDGRYGLVVC 145 (465)
Q Consensus 132 ~sg~-~~~~~aLVVa 145 (465)
+.+. .||+++|+++
T Consensus 118 ~~~~~~~Gd~vll~g 132 (149)
T d1ub7a2 118 DAGRIREGDHVLLVS 132 (149)
T ss_dssp HHTSSCTTCEEEEEE
T ss_pred HcCCCCCCCEEEEEE
Confidence 4443 3789999987
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.37 E-value=0.055 Score=44.78 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEe-ec--CcChhH--HHHHHHH
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD-ST--NACYGG--TAALFNC 127 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~d-i~--~aC~gg--~~AL~~A 127 (465)
++....++++++|+++|++++|||.+++.. ..+..-..+++.||+ +++-.... +. ..|.+. ..+|..|
T Consensus 46 a~~~v~~~i~~~L~~~gl~~~dId~~i~Hq-----a~~~i~~~v~~~lgl--~~ek~~~~~~~~~GNt~sasip~~L~~a 118 (148)
T d1u6ea2 46 AAFKMGDVGRRAMDAAGVRPDQIDVFVPHQ-----ANSRINELLVKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAEL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEECC-----SCHHHHHHHHHHHTC--CTTCEECCTHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccEEEecc-----ccHHHHHHHHHhcCC--CchhhhhhhHHhhCCCccchHHHHHHHH
Confidence 345556789999999999999999999743 234556679999998 43322222 21 233333 3344433
Q ss_pred HHHHHcCC-CCCCEEEEEE
Q 012353 128 VNWVESSS-WDGRYGLVVC 145 (465)
Q Consensus 128 ~~~l~sg~-~~~~~aLVVa 145 (465)
++.+. -+|+++|+++
T Consensus 119 ---~~~g~i~~Gd~vll~g 134 (148)
T d1u6ea2 119 ---LTTGAAKPGDLALLIG 134 (148)
T ss_dssp ---HHHTSSCTTCEEEEEE
T ss_pred ---HHcCCCCCCCEEEEEE
Confidence 44443 2678888887
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.55 E-value=0.23 Score=42.77 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=22.7
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
++.++||+++..|...+++.+.+-.+.
T Consensus 76 ~i~~~di~~v~ahgtGt~~~D~~E~~a 102 (194)
T d1tqyb2 76 GTGPEDVDVVFADGAGVPELDAAEARA 102 (194)
T ss_dssp TCCGGGCCEEECCCCCSHHHHHHHHHH
T ss_pred cccccceeeeeccccCcccccHHHhhh
Confidence 688999999999999999988764433
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=93.64 E-value=0.16 Score=40.50 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC---CCCceeEeec--CcChhHHHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG---NTDIEGVDST--NACYGGTAALFNCVNWV 131 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g---~~~~~~~di~--~aC~gg~~AL~~A~~~l 131 (465)
-+.|++++|+++|++.+|||.+.+. | ..-+.+-..++.||+.. |.+--++-++ .||+|.-..+.++..+-
T Consensus 24 Pv~A~~~lL~r~gl~~~Did~~Ein-E----AFA~q~la~~~~l~id~~kvN~~GGaiAlGHP~GaSGarl~~tl~~~L~ 98 (124)
T d1m3ka2 24 PIPASRKALERAGWKIGDLDLVEAN-E----AFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMK 98 (124)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC-C----SBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCChhcccHHHhc-c----cchhheeeehHhhCCChhhcCCCCCccccccCcCccchhHHHHHHHHHH
Confidence 4578999999999999999999872 1 12234455788888610 1111123333 58888888888888877
Q ss_pred HcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 132 ESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 132 ~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
+.+ +++.|+-.+ ..|..++|+||++
T Consensus 99 ~~~---~~~Glas~C------------~gGG~g~A~liE~ 123 (124)
T d1m3ka2 99 RRG---ARKGLATLC------------IGGGMGVAMCIES 123 (124)
T ss_dssp HHT---CSEEEEEEE------------ETTTEEEEEEEEC
T ss_pred hcC---CCEEEEEec------------ccccceeEEEEEe
Confidence 655 367765432 3466678888864
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.16 Score=41.54 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccCCCCceeEeec--C--cChhHHHHHHHHHH
Q 012353 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST--N--ACYGGTAALFNCVN 129 (465)
Q Consensus 54 ~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g~~~~~~~di~--~--aC~gg~~AL~~A~~ 129 (465)
+....++++++|+++|++++|||.++.... .+..-..+++.||+ +..-....+. . ++++-..+|..+
T Consensus 43 v~~~~~~i~~~L~~~g~~~~dId~~i~Hq~-----~~~~~~~~~~~l~l--~~~k~~~~~~~~GN~~sasip~~L~~~-- 113 (143)
T d1hnja2 43 VTELAHIVDETLAANNLDRSQLDWLVPHQA-----NLRIISATAKKLGM--SMDNVVVTLDRHGNTSAASVPCALDEA-- 113 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEECCS-----CHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHHHH--
T ss_pred hhhhhHHHHHHHHHhhhcccccceEEeccC-----chHHHHHHHHhCcc--chhhhhhhhhhhcccccchHHHHHHHH--
Confidence 455567899999999999999999986432 33455678999997 3321122221 2 333334444443
Q ss_pred HHHcCC-CCCCEEEEEE
Q 012353 130 WVESSS-WDGRYGLVVC 145 (465)
Q Consensus 130 ~l~sg~-~~~~~aLVVa 145 (465)
++.+. .+|+++|+++
T Consensus 114 -~~~~~~~~Gd~vll~g 129 (143)
T d1hnja2 114 -VRDGRIKPGQLVLLEA 129 (143)
T ss_dssp -HHTTCSCTTCEEEEEE
T ss_pred -HHhCCCCCCCEEEEEE
Confidence 33432 3778999887
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=92.10 E-value=0.24 Score=39.66 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC------CCCceeEeec--CcChhHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG------NTDIEGVDST--NACYGGTAALFNCV 128 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g------~~~~~~~di~--~aC~gg~~AL~~A~ 128 (465)
.+.|++++|+++|++.+|||.+... |. ..+.+-.+++.++..+ |.+--++-+. .||+|.-..+.++.
T Consensus 25 p~~A~~klL~ragl~~~did~~Ein-EA----FA~q~l~~~~~~~~~~~~~ekvN~~GGaiAlGHP~GASGaRlv~~l~~ 99 (128)
T d1wdkc2 25 PVPATQKALKRAGLNMADIDFIELN-EA----FAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLN 99 (128)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEEEC-CS----BHHHHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhcCccccccceEEee-cc----cchhhhhhhhhcccccCCcceecCCCCcccccccccccchhHHHHHHH
Confidence 4578999999999999999999862 11 1122223334433200 1222223333 47888777777777
Q ss_pred HHHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 129 NWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 129 ~~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
.+-+.+ +++.|+-. +..|..++||||++
T Consensus 100 ~L~~~~---~~~Glas~------------C~gGG~g~A~~iEr 127 (128)
T d1wdkc2 100 VMKQNG---GTFGLSTM------------CIGLGQGIATVFER 127 (128)
T ss_dssp HHHHTT---CSEEEEEE------------EETTTEEEEEEEEC
T ss_pred HHHhcC---CCEEEEEe------------cccccceeEEEEEe
Confidence 776654 36776533 23577788888864
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.31 E-value=1.5 Score=37.57 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.6
Q ss_pred CCCCCCCceeeccCCchHHHHHHHH
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFA 259 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~ 259 (465)
++.++||+++-.|...+++.+.+-.
T Consensus 79 ~i~~~~i~~ie~hgtGt~~~D~~E~ 103 (205)
T d1tqya2 79 RTDATDIDYINAHGSGTRQNDRHET 103 (205)
T ss_dssp TCCGGGCCEEECCCCCCHHHHHHHH
T ss_pred cCCccceeeeeccccccccCchhHH
Confidence 6889999999999999998886543
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=87.70 E-value=1.5 Score=34.55 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhccc-C----CCCceeEeec--CcChhHHHHHHHHHH
Q 012353 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKF-G----NTDIEGVDST--NACYGGTAALFNCVN 129 (465)
Q Consensus 57 a~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~-g----~~~~~~~di~--~aC~gg~~AL~~A~~ 129 (465)
-+.|++++|+++|++++|||.+... | ..-+..-...+.+++. . |.+--++-++ .||+|.-..+.+...
T Consensus 23 P~~A~~~~L~r~gl~~~Did~~Ein-E----AFAaq~l~~~~~~~l~~d~~kvN~~GGaIAlGHP~GASGari~~tl~~~ 97 (125)
T d1ulqa2 23 PVPATRKALERAGLSFSDLGLIELN-E----AFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHE 97 (125)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEEC-C----SBHHHHHHHHHHHTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhHhhccCcCccccchheec-c----ccchhHHHHHHHhhccCchhhcCCCCCcccccCCccccchhHHHHHHHH
Confidence 4678999999999999999999862 1 1112233345554430 0 1111123333 367776666667766
Q ss_pred HHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecC
Q 012353 130 WVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~ 171 (465)
+-+.+ +++.++-.+ ..|..+.||||++
T Consensus 98 L~~~~---~~~G~as~C------------~gGG~g~A~~iE~ 124 (125)
T d1ulqa2 98 MRRRK---VQFGLATMC------------IGVGQGIAVVVEG 124 (125)
T ss_dssp HHHTT---CSEEEEEEE------------ETTTEEEEEEEEE
T ss_pred HHhcC---CCEEEEEec------------ccccceeEEEEEe
Confidence 66644 366665332 3566778888764
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.55 E-value=0.93 Score=35.80 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcccC---CCCceeEeec--CcChhHHHHHHHHHH
Q 012353 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG---NTDIEGVDST--NACYGGTAALFNCVN 129 (465)
Q Consensus 55 ~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl~g---~~~~~~~di~--~aC~gg~~AL~~A~~ 129 (465)
.=-+.|++++|+++|++.+|||++.+. ...-+..-..++.|++.- |.+--++-+. .||+|.-..+.+...
T Consensus 24 ~gPv~Ai~klL~r~gl~~~Did~~Ein-----EAFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~GaSGarlv~~l~~~ 98 (124)
T d1afwa2 24 VGPAYAIPKVLEATGLQVQDIDIFEIN-----EAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRE 98 (124)
T ss_dssp GHHHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCCGGGBSTTCCHHHHCBCTTTHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHcCCCcccCcEEEec-----cchhHHHHHHHHHcCCChhhccccCccceecCCcCCchHHHHHHHHHH
Confidence 345678999999999999999999872 112234456777887610 1111122223 477776666666555
Q ss_pred HHHcCCCCCCEEEEEEeccccccCCCCCcccccceeeeeecCC
Q 012353 130 WVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPD 172 (465)
Q Consensus 130 ~l~sg~~~~~~aLVVasD~~~y~~~~~~~t~GdGA~A~Ll~~~ 172 (465)
+ + .+++.|+-.+ ..|.-++|+||+++
T Consensus 99 L-~----~~~~glas~C------------~ggG~G~a~~ier~ 124 (124)
T d1afwa2 99 L-K----KDQIGVVSMC------------IGTGMGAAAIFIKE 124 (124)
T ss_dssp S-C----TTCEEEEEEE------------ETTTEEEEEEEEEC
T ss_pred h-c----cCCEEEEEEc------------ccCCcEEEEEEEeC
Confidence 4 2 2366655221 23443677777653
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.41 E-value=2 Score=33.71 Aligned_cols=85 Identities=9% Similarity=0.173 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHhhhhhhcccccchhhHhhhccCCCCCCCCCccccchhHH
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLE 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~ 299 (465)
+.+.++++. +++++|||.|=+|-.|.-..-...+.| +++.+++..+
T Consensus 29 Ai~klL~r~------gl~~~Did~~EinEAFA~q~l~~~~~l------------------------~id~~kvN~~---- 74 (124)
T d1afwa2 29 AIPKVLEAT------GLQVQDIDIFEINEAFAAQALYCIHKL------------------------GIDLNKVNPR---- 74 (124)
T ss_dssp HHHHHHHHH------TCCGGGCSEEEECCSBHHHHHHHHHHH------------------------TCCGGGBSTT----
T ss_pred HHHHHHHHc------CCCcccCcEEEeccchhHHHHHHHHHc------------------------CCChhhcccc----
Confidence 455566665 799999999999999998888777776 6666554211
Q ss_pred HHHHhhhhhhhhhccCCCcccccccCccchhhHHHHHHHHHHhcCCCCCCCEEEEEEe--ccch
Q 012353 300 KVSQQLAKPLYDAKVQPSTLIPKQVGNMYTASLYAALASLIHNKHSELDGKRVVLFSY--GSGL 361 (465)
Q Consensus 300 k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ll~~~~~~~~G~rill~sy--GsG~ 361 (465)
--+ =-+||-..||=---+.+++.+ ++.+ +.++++. |.|.
T Consensus 75 ---------------GGa----iAlGHP~GaSGarlv~~l~~~---L~~~-~~glas~C~ggG~ 115 (124)
T d1afwa2 75 ---------------GGA----IALGHPLGCTGARQVATILRE---LKKD-QIGVVSMCIGTGM 115 (124)
T ss_dssp ---------------CCH----HHHCBCTTTHHHHHHHHHHHH---SCTT-CEEEEEEEETTTE
T ss_pred ---------------Ccc----ceecCCcCCchHHHHHHHHHH---hccC-CEEEEEEcccCCc
Confidence 000 256888888777777777766 2333 5566665 4444
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=86.36 E-value=2.5 Score=34.52 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=21.9
Q ss_pred CCCCCCCceeeccCCchHHHHHHHH
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFA 259 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~ 259 (465)
++.++|||++..|...++..+.+--
T Consensus 40 gi~p~~I~~ie~HgtGT~~gD~~E~ 64 (159)
T d1j3na2 40 GIAPEQVGYINAHGTSTPVGDRAEV 64 (159)
T ss_dssp TCCGGGCCEEECCCCSCHHHHHHHH
T ss_pred CCCHHHcCeEeccccCCccchHHHH
Confidence 7899999999999999998887643
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=85.81 E-value=2.6 Score=34.41 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=21.9
Q ss_pred CCCCCCCceeeccCCchHHHHHHHH
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFA 259 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~ 259 (465)
++.++||+++..|..++++.+.+-.
T Consensus 40 ~i~~~~i~~v~~HgtGT~~~D~~E~ 64 (161)
T d1e5ma2 40 GLKPEMVSYINAHGTSTPANDVTET 64 (161)
T ss_dssp TCCGGGCCEEECCCCSCHHHHHHHH
T ss_pred CCChhhcceEEEeccCCcccchHHh
Confidence 7899999999999999998886643
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=84.73 E-value=2.8 Score=32.84 Aligned_cols=36 Identities=6% Similarity=0.049 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCceeeccCCchHHHHHHHHHh
Q 012353 220 CYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARL 261 (465)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~did~~~~H~p~~km~~~~~~~L 261 (465)
+.+.++++. +++++|+|.|=+|-.|.-..-...+.|
T Consensus 27 A~~~lL~r~------gl~~~Did~~EinEAFA~q~la~~~~l 62 (124)
T d1m3ka2 27 ASRKALERA------GWKIGDLDLVEANEAFAAQACAVNKDL 62 (124)
T ss_dssp HHHHHHHHH------TCCGGGCSEEEECCSBHHHHHHHHHHH
T ss_pred HHHHHHHHc------CCChhcccHHHhcccchhheeeehHhh
Confidence 445566665 799999999999999998877777766
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.42 E-value=1.4 Score=41.29 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHCCCCcCCccEEEEEeecCCCCcccHHHHHHHHhcc
Q 012353 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (465)
Q Consensus 53 ~~~la~~Aa~~aL~~agi~~~~Id~li~~T~s~~~~~ps~a~~l~~~LGl 102 (465)
+.....++.+++|+++|++++|||.+++... .+.+-..+++.||+
T Consensus 264 ~~~~~~~~i~~~L~~~gl~~~did~~i~Hq~-----~~~i~~~i~~~Lgl 308 (372)
T d1teda_ 264 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPG-----GPKIIEQSVRSLGI 308 (372)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCSCEEECCS-----CHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHhhhhhccCc-----cHHHHHHHHHHcCC
Confidence 4566677889999999999999999887432 34455678899997
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.87 E-value=3.8 Score=33.28 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.1
Q ss_pred CCCCCCCceeeccCCchHHHHHHHHH
Q 012353 235 QFSLSNADYFVFHSPYNKLVQKSFAR 260 (465)
Q Consensus 235 ~~~~~did~~~~H~p~~km~~~~~~~ 260 (465)
++.++|||++..|...+++.+.....
T Consensus 40 ~l~p~~i~~v~aHgtgT~~~D~~E~~ 65 (158)
T d1ox0a2 40 EISPEQVAYVNAHGTSTPANEKGESG 65 (158)
T ss_dssp TCCGGGCCCEECCCCSCHHHHHHHHH
T ss_pred cccceeeeEEeeeccccccchhHHHH
Confidence 78999999999999999988865433
|