Citrus Sinensis ID: 012355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MEGSFIRPSIINYFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTEENSNGNKEKNFACLSEENGHISAKRQRIECS
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcccHcccEEEEEEEHHcHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHcHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHHcccccEEEEccccccccccccccccEEccccccccccccccccEEEcccccccccccccEEEcc
Coil and Loop (DISEMBL)
megsfirpSIINYFIAFYFTYISMEKLARSLegkgisddktgsadenseshsrASIELSLRKSYYILskipsmednneksehemwsgsgssseegnlkeaskksktkvkmpkaeksnnnSCLQALSAAIISKKMKSKFTKAWITFLrlplpvdiYKEVLVTLHRAvipflsnpimlcdfltrsydiggVVSVMALSSLFILMTqhgleypnFYEKLYALLVPSIFMAKHRAKFFELLDsclrspllPAYLAAAFVKKLSRlsilvppsgALVIMALIHNLLrrhpsincllhredgnethnddskAEKEIVDAATVanissikpgidhfddeesnpvksnamrSSLWEIdtlrhhycppvsrFVLSLENDltvraktteinvkdfcsgsyatIFGEEIRRRVKQVPlafykttptslfsdsdfagwtficdkteensngnkeknFACLseenghisaKRQRIECS
Flexible Loop (DISEMBL)
megsfirpSIINYFIAFYFTYISMEKLARSLEGKGISDDktgsadenseshsrasielslrKSYYILSKIPSMEDNNEKSEHEMwsgsgssseegnlkeaskksktkvkmpkaeksnnnscLQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVAnissikpgidhfddeesnpVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAktteinvkdfcsgsyATIFGEEIRRRVKQVPLAFYKttptslfsdsdfAGWTFICDKteensngnkEKNFaclseenghisakrqriecs
Low Complexity Region (SEG)
MEGSFIRPSIINYFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNNEKsehemwsgsgssseegNLkeaskksktkvkmpkAEKSNNNSCLQALsaaiiskkmkskFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTEENSNGNKEKNFACLSEENGHISAKRQRIECS
Disordered region (IsUnstruct)
****FIRPSIINYFIAFYFTYISMEKL***********************************SYYIL******************************************************LQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLH*****************************************************LWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICD**********************************
Disordered Region (DISOPRED)
**GSFIRPSIINYFIAFYFTYISMEKLARSLE*****************SHSRASIELSLRKSYYILSKIP************************************************************KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGN****************************IDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLT*******INVKDFCSGSYATIFGEEIRRRVKQ*******************AGWTFI************************************
Disordered Region (DISEMBL)
MEGSFIRPSIINYFIAFYFTYISMEKLARSLEGK********************SIELSLRKSYYILSKIPSM*********************************************NSCLQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDG*********AEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTEENSNGNKEKNFACLSEENG************
Disordered Region (DISPRO)
*EGSFIRPSIINYFIAFYFTYISMEKLARSLEG*******************RASIELSLRKSYYILSKIPSMEDNNEK******************************************LQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHRED***************************KPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDK*********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGSFIRPSIINYFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTEENSNGNKEKNFACLSEENGHISAKRQRIECS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
Q8BHY2	516	Nucleolar complex protein	yes	no	0.535	0.482	0.401	2e-55
Q5ZJC7	508	Nucleolar complex protein	yes	no	0.531	0.486	0.396	3e-55
Q5I0I8	516	Nucleolar complex protein	yes	no	0.535	0.482	0.397	3e-55
Q6NU91	525	Nucleolar complex protein	N/A	no	0.535	0.474	0.392	6e-53
Q4VBT2	525	Nucleolar complex protein	yes	no	0.602	0.533	0.364	2e-52
Q6NRQ2	526	Nucleolar complex protein	N/A	no	0.443	0.391	0.441	8e-51
Q9BVI4	516	Nucleolar complex protein	yes	no	0.535	0.482	0.394	3e-48
Q06512	552	Nucleolar complex protein	yes	no	0.615	0.518	0.355	3e-47
O94372	485	Uncharacterized protein C	yes	no	0.541	0.519	0.380	4e-47
P41843	504	Uncharacterized protein T	yes	no	0.438	0.404	0.283	1e-24

>sp|Q8BHY2|NOC4L_MOUSE Nucleolar complex protein 4 homolog OS=Mus musculus GN=Noc4l PE=2 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 170/279 (60%), Gaps = 30/279 (10%)

Query: 132 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVS 191
           K+ K  F + W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLT + D+GG +S
Sbjct: 246 KEHKKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAIS 305

Query: 192 VMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLA 251
           ++AL+ LFIL+ +H LEYP+FY+KLY LL PSIF  K+RA+FF L D  L S  LPAYL 
Sbjct: 306 LLALNGLFILIHKHNLEYPDFYQKLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLV 365

Query: 252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV 311
           AAF K+L+RL++  PP   L+++ LI NLLRRHP+   ++HR  G E            +
Sbjct: 366 AAFAKRLARLALTAPPEALLMVLPLICNLLRRHPACRVMVHRPQGPE------------L 413

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDL 371
           DA             D +D  E +P +S A+ S LWE+ TL+ HY P VS+    +   L
Sbjct: 414 DA-------------DPYDPTEKDPARSRALESCLWELQTLQQHYHPEVSKAASVINQVL 460

Query: 372 TVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQ-VPLAF 409
           +V     E+++      +   IF +++++++ + VPL F
Sbjct: 461 SV----PEVSIAPLLELTAYEIFEQDLKKKMPESVPLEF 495

Mus musculus (taxid: 10090)

>sp|Q5ZJC7|NOC4L_CHICK Nucleolar complex protein 4 homolog OS=Gallus gallus GN=NOC4L PE=2 SV=1

 Score =  216 bits (551), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/275 (39%), Positives = 166/275 (60%), Gaps = 28/275 (10%)

Query: 135 KSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMA 194
           K  F + W+TFL+  LP  +YK+VLV LH +++P+++ P ++ DFLT +Y +GG +S++A
Sbjct: 241 KQAFERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGVGGAISLLA 300

Query: 195 LSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAF 254
           L+ LFIL+ QH LEYP+FY+KLY+LL PSI+  K+RA+FF L D  L S  LPAYL AAF
Sbjct: 301 LNGLFILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLADLFLSSSHLPAYLVAAF 360

Query: 255 VKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAA 314
           +K+LSRL++  PP   L+++  I NL RRHP+   L+HR +G +  ++D           
Sbjct: 361 IKRLSRLALTAPPEALLMVIPFICNLFRRHPACKVLMHRPNGPQDLSEDP---------- 410

Query: 315 TVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVR 374
                         +  E+  P +S A+ SSLWE+ +L++HY P V++    L   L+  
Sbjct: 411 --------------YIMEQEEPSESRALESSLWELQSLQNHYHPDVAQAAAILNQSLS-- 454

Query: 375 AKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAF 409
               E ++      S + +F +EI++    VPL F
Sbjct: 455 --EIEDDISGLLELSASELFDKEIKKTSANVPLEF 487

Gallus gallus (taxid: 9031)

>sp|Q5I0I8|NOC4L_RAT Nucleolar complex protein 4 homolog OS=Rattus norvegicus GN=Noc4l PE=2 SV=1

 Score =  216 bits (550), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 30/279 (10%)

Query: 132 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVS 191
           K+ +  F + W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLT + D+GG +S
Sbjct: 246 KEQRKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAIS 305

Query: 192 VMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLA 251
           ++AL+ LFIL+ +H LEYP+FY++LY LL PSIF  K+RA+FF L D  L S  LPAYL 
Sbjct: 306 LLALNGLFILIHKHNLEYPDFYQRLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLV 365

Query: 252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV 311
           AAF K+L+RL++  PP   L+++ LI NLLRRHP+   ++HR  G E            +
Sbjct: 366 AAFAKRLARLALTAPPEALLMVLPLICNLLRRHPACRVMVHRPQGPE------------L 413

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDL 371
           DA             D +D  E +P +S A+ S LWE+ TL+ HY P VSR    +   L
Sbjct: 414 DA-------------DPYDPTEKDPARSRALESCLWELQTLQQHYHPEVSRAASVINQAL 460

Query: 372 TVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQ-VPLAF 409
           +V     E+++      +   IF +++++ + + VPL F
Sbjct: 461 SV----PEVSIAPLLELTAYEIFEQDLKKMMPESVPLEF 495

Rattus norvegicus (taxid: 10116)

>sp|Q6NU91|NOC4B_XENLA Nucleolar complex protein 4 homolog B OS=Xenopus laevis GN=noc4l-b PE=2 SV=1

 Score =  208 bits (530), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 162/278 (58%), Gaps = 29/278 (10%)

Query: 132 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVS 191
           K+ K  F + W++FL+  L V +YK+VL+ LH +++P +S P ++ DFLT +YD+GG +S
Sbjct: 257 KEQKRVFERVWMSFLKHQLSVSLYKKVLLILHESILPHMSKPSLMIDFLTAAYDVGGAIS 316

Query: 192 VMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLA 251
           ++AL+ LFIL+ QH LEYP+FY+KLY+LL PS+F  K+RA+FF L +  L S  LP YL 
Sbjct: 317 LLALNGLFILIHQHNLEYPDFYKKLYSLLEPSVFHVKYRARFFHLANLFLSSTHLPVYLV 376

Query: 252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV 311
           AAF K+L+RL++  PP   L+I+  I NL+RRHP+   L+HR    +   D         
Sbjct: 377 AAFAKRLARLALTAPPQVLLMIIPFICNLIRRHPACRVLIHRPSAGDLVTD--------- 427

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDL 371
                       P I     EE +P KS A+ S LWE++ L+ HY   V R      N +
Sbjct: 428 ------------PYI----MEEQDPAKSQALESCLWELEVLQQHYHGDVVRAA----NVI 467

Query: 372 TVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAF 409
           +      E +V      S   +F +E++++ K VPL +
Sbjct: 468 SRALSAQESDVSGLLEMSSCELFDKEMKKKFKSVPLEY 505

Xenopus laevis (taxid: 8355)

>sp|Q4VBT2|NOC4L_DANRE Nucleolar complex protein 4 homolog OS=Danio rerio GN=noc4l PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 174/313 (55%), Gaps = 33/313 (10%)

Query: 106 TKVKMPKAEKSNNNSCLQALSA-----AIISKKMKSKFTKAWITFLRLPLPVDIYKEVLV 160
           T + +P       N  +Q  S      A   K+ K  F + W+ FLR  LP  +YK++LV
Sbjct: 224 TTINIPNQASEMTNFLVQQQSKHDDWKAAKLKEHKRAFEQMWLLFLRYKLPGSMYKKILV 283

Query: 161 TLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALL 220
            LH +++P +S+P ++ DFL+ +YDIGG +S+ AL+ LF+ + +H L+YP+FY+KLY LL
Sbjct: 284 ILHESILPQMSDPKLMMDFLSAAYDIGGAISLSALNGLFVPIHEHNLDYPDFYKKLYNLL 343

Query: 221 VPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNL 280
            PSIF  K+RA+FF L +  L S  LP YL AAFVK+L+RLS+  PP+  L+++  I NL
Sbjct: 344 DPSIFHVKYRARFFHLANIFLSSTHLPVYLVAAFVKRLARLSLTAPPTALLILLPFICNL 403

Query: 281 LRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSN 340
           +RRHPS   L+HR    +                        +P  D +  EE +P + +
Sbjct: 404 IRRHPSCRVLIHRPSAAD------------------------EPCDDPYVMEEEDPAQCH 439

Query: 341 AMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRR 400
           A+ SSLWEI TL++H+ P VS+    +   L+ +    E ++ +    +   +   E++ 
Sbjct: 440 ALESSLWEIKTLQNHHHPDVSKAATMINEPLSAQ----EEDISELLELTTFELMERELKG 495

Query: 401 RVKQVPLAFYKTT 413
             K VPL F   T
Sbjct: 496 EKKTVPLEFDMAT 508

Danio rerio (taxid: 7955)

>sp|Q6NRQ2|NOC41_XENLA Nucleolar complex protein 4 homolog A OS=Xenopus laevis GN=noc4l-a PE=2 SV=1

 Score =  201 bits (512), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 142/231 (61%), Gaps = 25/231 (10%)

Query: 132 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVS 191
           K  K  F + W+ FL+  L V +YK+VL+ LH +++P +S P ++ DFLT +YD+GG +S
Sbjct: 257 KDHKRVFERVWMIFLKHQLSVSLYKKVLLILHESILPHMSKPTLMIDFLTAAYDVGGAIS 316

Query: 192 VMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLA 251
           ++AL+ LFIL+ QH LEYP+FY+KLY+LL PSIF  K+RA+FF L +  L S  LP YL 
Sbjct: 317 LLALNGLFILIHQHNLEYPDFYKKLYSLLEPSIFHVKYRARFFHLANMFLSSTHLPVYLV 376

Query: 252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV 311
           AAF K+L+RL++  PP   L+I+  I NL+RRHP+   L+HR                  
Sbjct: 377 AAFAKRLARLALTAPPQVLLMIIPFICNLIRRHPACRVLIHRPSAG-------------- 422

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSR 362
           D AT           D +  EE +P KS A+ SSLWE++ L+ HY   V R
Sbjct: 423 DLAT-----------DPYIMEEQDPAKSQALESSLWELEVLQQHYHGDVVR 462

Xenopus laevis (taxid: 8355)

>sp|Q9BVI4|NOC4L_HUMAN Nucleolar complex protein 4 homolog OS=Homo sapiens GN=NOC4L PE=1 SV=1

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 167/279 (59%), Gaps = 30/279 (10%)

Query: 132 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVS 191
           K+ +  F   W++FL+  LP+ +YK+VL+ +H A++P L+ P ++ DFLTR+ D+GG +S
Sbjct: 246 KEHRRVFQAMWLSFLKHKLPLSLYKKVLLIVHDAILPQLAQPTLMIDFLTRACDLGGALS 305

Query: 192 VMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLA 251
           ++AL+ LFIL+ +H LEYP+FY KLY LL PS+F  K+RA+FF L D  L S  LPAYL 
Sbjct: 306 LLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRARFFHLADLFLSSSHLPAYLV 365

Query: 252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV 311
           AAF K+L+RL++  PP   L+++  I NLLRRHP+   L+HR  G E            +
Sbjct: 366 AAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPHGPE------------L 413

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDL 371
           DA             D +D  E +P +S A+ SSLWE+  L+ HY P VS+    +   L
Sbjct: 414 DA-------------DPYDPGEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQAL 460

Query: 372 TVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQ-VPLAF 409
           ++     E+++      +   IF  +++++  + VPL F
Sbjct: 461 SM----PEVSIAPLLELTAYEIFERDLKKKGPEPVPLEF 495

Homo sapiens (taxid: 9606)

>sp|Q06512|NOC4_YEAST Nucleolar complex protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC4 PE=1 SV=1

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 175/315 (55%), Gaps = 29/315 (9%)

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------ 186
           K KS F K W++ L   L +  YK +L+ LH+ +IP    P  L DFLT SY++      
Sbjct: 252 KFKSNFEKNWLSLLNGQLSLQQYKSILLILHKRIIPHFHTPTKLMDFLTDSYNLQSSNKN 311

Query: 187 GGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLL 246
            GVV ++AL+ LF LM +  LEYPNFY KLY ++ P +   K+RA+FF L+D  L S  L
Sbjct: 312 AGVVPILALNGLFELMKRFNLEYPNFYMKLYQIINPDLMHVKYRARFFRLMDVFLSSTHL 371

Query: 247 PAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKA 306
            A+L A+F+KKL+RL++  PPS  + ++  I+NL+R+HP  NC++   +     N     
Sbjct: 372 SAHLVASFIKKLARLTLESPPSAIVTVIPFIYNLIRKHP--NCMIMLHNPAFISNPFQTP 429

Query: 307 EKEIVDAATVANISSIKPG-IDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVL 365
           ++       VAN+ ++K   +D FD  ES+P  ++A+ SSLWE+ +L  HY P V+    
Sbjct: 430 DQ-------VANLKTLKENYVDPFDVHESDPELTHALDSSLWELASLMEHYHPNVA---- 478

Query: 366 SLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAG 425
           +L        K    N++DF   +Y ++   E  R++K +P   ++   T++F + D   
Sbjct: 479 TLAKIFAQPFKKLSYNMEDFLDWNYDSLLNAESSRKLKTLPTLEFEAF-TNVFDNED--- 534

Query: 426 WTFICDKTEENSNGN 440
                  +E +S GN
Sbjct: 535 -----GDSEASSQGN 544

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. Has a role in the nuclear export of 40S pre-ribosomal subunit to the cytoplasm.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94372|YG06_SCHPO Uncharacterized protein C1604.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1604.06c PE=3 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 165/284 (58%), Gaps = 32/284 (11%)

Query: 134 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVM 193
           +K  F ++W++ L LPL V++YK+VL  +H+ VIPFL  P +L DFLT +Y+    VS++
Sbjct: 226 IKRAFQESWLSALSLPLSVNLYKQVLNVIHKRVIPFLQKPNLLMDFLTDAYNSHHAVSLL 285

Query: 194 ALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAA 253
           AL+ LF LM  H L+YP FY KLYALL  ++   K R++FF LLD  L S  LPA L A+
Sbjct: 286 ALNGLFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDLFLSSTHLPATLIAS 345

Query: 254 FVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDA 313
           F+K+L+RL++  PP    +++  I+N L+RHP+   +LHR                    
Sbjct: 346 FIKRLARLALTAPPGAIAIVIPFIYNCLQRHPTCMQMLHR-------------------- 385

Query: 314 ATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTV 373
                 SS + G D FD ++ +P+ + A+ SSLWE+ TL++HY   ++    SL + ++ 
Sbjct: 386 ------SSAESG-DSFDFDQPDPLLTGAIESSLWELSTLQNHYYSNIA----SLASIMSQ 434

Query: 374 RAKTTEINVKDFCSGSYATIFGEEIRRRVK-QVPLAFYKTTPTS 416
           +       ++DF    YAT+   E+RR +K + P+ F K T  S
Sbjct: 435 KFTKPRYELEDFLDHGYATMCDAELRRPLKNEPPIEFEKRTLAS 478

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P41843|YO93_CAEEL Uncharacterized protein T20B12.3 OS=Caenorhabditis elegans GN=T20B12.3 PE=3 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 25/229 (10%)

Query: 134 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVM 193
           + + +   W+  +   +   +  +++  + + VI  L  P    DF  + +D      ++
Sbjct: 190 ISTDYDNVWMAVMNGKISDKLTLKLIPYITQNVISKLKAPFKSADFFFKMFDKTDYHGIL 249

Query: 194 ALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAA 253
           +L ++F L+++H  EYP FY+K+Y+L  PS+     +     LLDS L S  LP Y+ A+
Sbjct: 250 SLGAIFRLISEHNFEYPKFYDKVYSLTNPSLLYMSQKESILTLLDSFLSSTHLPTYITAS 309

Query: 254 FVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDA 313
           F+K+LSR  +L P      I+ LI NL+ RHP+ + L+HRE     ++D           
Sbjct: 310 FLKRLSRCLLLAPIDAQEPILGLIRNLVIRHPNCSELVHREVPQTLYDDP---------- 359

Query: 314 ATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSR 362
                          FD++E++  K+ A+ SSLWE+  L+ H+   V +
Sbjct: 360 ---------------FDNDETDLHKTRALESSLWEMKLLQCHWNQSVRK 393

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
255580614	652	nucleolar complex protein, putative [Ric	0.926	0.661	0.645	1e-165
224104817	575	predicted protein [Populus trichocarpa]	0.853	0.690	0.702	1e-165
357492085	607	Nucleolar complex protein-like protein [	0.920	0.705	0.636	1e-160
356553291	600	PREDICTED: nucleolar complex protein 4 h	0.905	0.701	0.642	1e-158
356501033	581	PREDICTED: nucleolar complex protein 4 h	0.881	0.705	0.648	1e-152
449500195	608	PREDICTED: nucleolar complex protein 4 h	0.913	0.699	0.590	1e-152
449474135	419	PREDICTED: nucleolar complex protein 4 h	0.901	1.0	0.595	1e-151
22325731	577	CCAAT-binding factor [Arabidopsis thalia	0.868	0.700	0.630	1e-148
297832324	582	hypothetical protein ARALYDRAFT_480608 [	0.868	0.694	0.627	1e-147
18086412	577	At2g17250/T23A1.11 [Arabidopsis thaliana	0.868	0.700	0.627	1e-147

>gi|255580614|ref|XP_002531130.1| nucleolar complex protein, putative [Ricinus communis] gi|223529279|gb|EEF31250.1| nucleolar complex protein, putative [Ricinus communis]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/463 (64%), Positives = 361/463 (77%), Gaps = 32/463 (6%)

Query: 12  NYFIAFYFTYISMEKLARSLEGKGISDDKTGSA-DENSESHSRASIELSLRKSYYILSKI 70
           NY    YFTYIS++KLA+++      D+K  SA + +  SH RAS++LS+ K +YILS I
Sbjct: 213 NYIDICYFTYISLDKLAKTMGENDSPDNKAKSAANGDDASHPRASMDLSIHKIHYILSCI 272

Query: 71  PSMEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAII 130
           P++ED  E S+++MWSG    +   ++        T + M           +Q LSAA I
Sbjct: 273 PTVEDPKENSDNKMWSGLVVFNLYSSVL-------TLLCM---------QSIQVLSAASI 316

Query: 131 SKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVV 190
           SKKMK KFTKAWI+FLRLPLPV++YKEVL++LH+AVIP++SNP+MLCDFLTRSYDIGGVV
Sbjct: 317 SKKMKLKFTKAWISFLRLPLPVNVYKEVLISLHQAVIPYISNPLMLCDFLTRSYDIGGVV 376

Query: 191 SVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYL 250
           SVMALSSLFILMTQHGLEYPNFYEKLYALL+PS+FMAKHR+KFF+LLDSCL+SPLLPAYL
Sbjct: 377 SVMALSSLFILMTQHGLEYPNFYEKLYALLLPSVFMAKHRSKFFQLLDSCLKSPLLPAYL 436

Query: 251 AAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEI 310
           AAAF K+LSRL++  PPSG +VI+ALIHNLLRRHPSINCL+HREDGNE+  D+SKA+ E 
Sbjct: 437 AAAFAKRLSRLALTAPPSGGVVIIALIHNLLRRHPSINCLVHREDGNESAADNSKAKGE- 495

Query: 311 VDAATVAN------ISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFV 364
            DA    N       S+ KPGID F++EE +P+KS+A+RSSLWEIDTL HHYCPPVSRFV
Sbjct: 496 -DAGDANNSRNGSHASARKPGIDRFNNEECSPIKSSALRSSLWEIDTLSHHYCPPVSRFV 554

Query: 365 LSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFA 424
           LSLENDLTVR KTTE+N+ DF S SYATIF EE+RRRVKQVPLAF+K TPTSLFS+SDFA
Sbjct: 555 LSLENDLTVRKKTTEVNINDFSSSSYATIFEEELRRRVKQVPLAFFKATPTSLFSESDFA 614

Query: 425 GWTFICDKTEENS--NGNKEKNFACLSEENGHISAKRQRIECS 465
           GWTF  ++++ N   NG  +K     SEEN     KRQRIECS
Sbjct: 615 GWTFKYEQSKRNDAVNGTSDK-----SEENDCSPTKRQRIECS 652

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104817|ref|XP_002313577.1| predicted protein [Populus trichocarpa] gi|222849985|gb|EEE87532.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/413 (70%), Positives = 344/413 (83%), Gaps = 16/413 (3%)

Query: 18  YFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNN 77
           YFTYI++EK A++LE K ISD KT S D+  ES SR S+ELS+ K +YI+S IP +ED  
Sbjct: 172 YFTYINIEKFAKNLELKDISDGKTESGDKVGESDSRESLELSIYKIHYIISNIPPLEDPK 231

Query: 78  EKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISKKMKSK 137
           + S++E+W GSG           S+  KT+ K  K+EK +N+     LSA   +KKMK K
Sbjct: 232 QNSDYELWGGSG----------PSQHLKTEDKDLKSEKHDND----VLSAGNYAKKMKLK 277

Query: 138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
           FTKAWI+FLRLPLP+D+YKEVL  LH+AVIP LSNPIMLCDFLTRSYDIGGVVSVMALSS
Sbjct: 278 FTKAWISFLRLPLPIDVYKEVLSNLHQAVIPHLSNPIMLCDFLTRSYDIGGVVSVMALSS 337

Query: 198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
           LFILMT+HGLEYPNFYEKLY LL+PSIFMAKHRAKFF+LLDSCL+SPLLPAYLAAAF KK
Sbjct: 338 LFILMTKHGLEYPNFYEKLYVLLLPSIFMAKHRAKFFQLLDSCLKSPLLPAYLAAAFAKK 397

Query: 258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAE--KEIVDAAT 315
           LSRL+++VPPSGALVI+ALIHNLLRRHPSINCL+H+ED N+T +++S+AE      +   
Sbjct: 398 LSRLALVVPPSGALVIIALIHNLLRRHPSINCLVHQEDCNDTTDNNSEAEGGDNENEFGA 457

Query: 316 VANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRA 375
             NI++ K GIDHFD+EESNP+KS+A+ SSLWEID+LRHHYCPPVSRFV SLENDLTVRA
Sbjct: 458 STNIAARKAGIDHFDNEESNPLKSHALGSSLWEIDSLRHHYCPPVSRFVQSLENDLTVRA 517

Query: 376 KTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTF 428
           KTTE+NV+DF SGSYATIFGEEIRRRVKQVP+AFYK  PTSLFS++DF+GW+F
Sbjct: 518 KTTEVNVEDFSSGSYATIFGEEIRRRVKQVPVAFYKAIPTSLFSETDFSGWSF 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492085|ref|XP_003616331.1| Nucleolar complex protein-like protein [Medicago truncatula] gi|355517666|gb|AES99289.1| Nucleolar complex protein-like protein [Medicago truncatula]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/454 (63%), Positives = 338/454 (74%), Gaps = 26/454 (5%)

Query: 13  YFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPS 72
           Y    YFT+IS+EKL R+L+GK  SDDKT SAD   ES   +S E  +   YY +S IP 
Sbjct: 177 YIDVRYFTFISLEKLTRNLDGKDASDDKTASADGTDESQLSSSTEFIIHNMYYTISHIPP 236

Query: 73  MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISK 132
           +E +++ S  EMWS                   T  K  K++K NNN     LSAA I+K
Sbjct: 237 LEKSDDTSHLEMWS------------------LTDDKQLKSKKRNNN----VLSAARIAK 274

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSV 192
           KMK KFTKAWI +LRLPLP+D++KEVLV LH+AVIP LSNPIMLCDFLTRSYD+GGVVSV
Sbjct: 275 KMKLKFTKAWIAYLRLPLPLDLFKEVLVNLHQAVIPHLSNPIMLCDFLTRSYDVGGVVSV 334

Query: 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAA 252
           MAL+SLFILMTQHGLEYP FYEKLYALLVPSIFMAKHRA+FF+LLDSCL+SPLLPAYLAA
Sbjct: 335 MALNSLFILMTQHGLEYPKFYEKLYALLVPSIFMAKHRARFFQLLDSCLKSPLLPAYLAA 394

Query: 253 AFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNET--HNDDSKAEKEI 310
           +F KKLSRL + VPPSGALVI +L+HN+LRRHPSINCL+HRE+ NE   H  D +    +
Sbjct: 395 SFAKKLSRLLLSVPPSGALVITSLVHNILRRHPSINCLVHREEVNEDSEHRTDEETNSNL 454

Query: 311 VDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEND 370
            +A  VA     K G+DHF+ EES+P+KS AMRSSLWEIDT  HHYCPPVSRF LSL  D
Sbjct: 455 DNAHNVAKPCQ-KSGLDHFNIEESDPMKSGAMRSSLWEIDTALHHYCPPVSRFALSLGTD 513

Query: 371 LTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFIC 430
           LTVRAKT+E+N+ DF +GSYATI G EI RRVKQVPLAFYKTTP+SLFS++DFAGWTF C
Sbjct: 514 LTVRAKTSEVNIGDFSAGSYATILGAEITRRVKQVPLAFYKTTPSSLFSENDFAGWTFKC 573

Query: 431 DKTEENSNGNKEKNFACLSEENGHISAKRQRIEC 464
           ++  E    N E     L ++  H  AKRQRIEC
Sbjct: 574 EENSETIIDNNENGAKDLLDQE-HSPAKRQRIEC 606

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553291|ref|XP_003544990.1| PREDICTED: nucleolar complex protein 4 homolog [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/433 (64%), Positives = 332/433 (76%), Gaps = 12/433 (2%)

Query: 13  YFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPS 72
           Y    YFT+IS++KLA +LEGK +SDDK  +AD +SES   +++E  +   YY +S +P 
Sbjct: 171 YIDVRYFTFISLKKLASTLEGKDVSDDKIANADGSSESQMSSNMECVIHNMYYTISHVPP 230

Query: 73  MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISK 132
            + ++  SE EMWS S     E + K+         K  K +K N N     LSAA I+K
Sbjct: 231 HQGSDNTSELEMWSSS-----ESDHKQLYGDKGADDKPQKFQKPNKN----VLSAAKIAK 281

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSV 192
           KMK KFTKAWI +LRLPLP+D+YKEVLV LH+AVIP LSNPIMLCDFLTRSYD+GGVVSV
Sbjct: 282 KMKLKFTKAWIAYLRLPLPIDVYKEVLVNLHQAVIPHLSNPIMLCDFLTRSYDVGGVVSV 341

Query: 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAA 252
           MALSSLF+LMTQ+GLEYPNFYEKLYALLVPSIFMAKHRA+FF+LLDSCL+SPLLPAYLAA
Sbjct: 342 MALSSLFVLMTQYGLEYPNFYEKLYALLVPSIFMAKHRARFFQLLDSCLKSPLLPAYLAA 401

Query: 253 AFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV- 311
           +F KKLSRL + VPPSGALVI ALIHN+LRRHPSINCL+HREDG +    D + ++ +  
Sbjct: 402 SFAKKLSRLLLSVPPSGALVITALIHNILRRHPSINCLVHREDGVDEGKGDHRTDEGMAT 461

Query: 312 --DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEN 369
             D A    + S K GIDHF+  E++P KS AMRSSLWEIDT+ HHYCPP SRF LSL N
Sbjct: 462 NSDNAKTVAMPSQKSGIDHFNSSETDPKKSGAMRSSLWEIDTILHHYCPPASRFALSLGN 521

Query: 370 DLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFI 429
           DLTVRAKTTE+NV DF +GSYATI G EI RRVKQVPLAF+K TP+SLFS++DFAGWTF 
Sbjct: 522 DLTVRAKTTEVNVGDFSAGSYATILGAEISRRVKQVPLAFFKATPSSLFSETDFAGWTFK 581

Query: 430 CDKTEENSNGNKE 442
           C++T +  N N +
Sbjct: 582 CEETPKMINDNND 594

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501033|ref|XP_003519333.1| PREDICTED: nucleolar complex protein 4 homolog [Glycine max]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/427 (64%), Positives = 328/427 (76%), Gaps = 17/427 (3%)

Query: 13  YFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPS 72
           Y    YFT+IS++KLA +LEGK +S    G+AD  SES   +++E  +   YY +S +P 
Sbjct: 166 YIDVRYFTFISLKKLASTLEGKDVS----GAADGTSESQLSSNMECVIHNMYYTISHVPP 221

Query: 73  MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISK 132
            + ++  S+ EMWS     S E + K+ S       K  K++K N N     LSAA I+K
Sbjct: 222 HKGSDNTSDLEMWS-----SSESDHKQLSGDKGADDKPQKSQKPNKN----VLSAAKIAK 272

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSV 192
           KMK KFTKAWI +LRLPLP D+YKEVLV LH+AVIP LSNPI+LCDFLTRSYD+GGVVSV
Sbjct: 273 KMKLKFTKAWIAYLRLPLPHDVYKEVLVCLHQAVIPHLSNPIILCDFLTRSYDVGGVVSV 332

Query: 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAA 252
           MALSSLF+LMTQ+GLEYPNFY+KLYALLVPSIFMAKHRA+FF+LLDSCL+SPLLPAYLAA
Sbjct: 333 MALSSLFVLMTQYGLEYPNFYDKLYALLVPSIFMAKHRARFFQLLDSCLKSPLLPAYLAA 392

Query: 253 AFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDG-NETHNDDSKAEKEIV 311
           +F KKLSRL + VPPSGALVI ALIHNLLRRHPSINCL+HREDG +E   D+  A     
Sbjct: 393 SFAKKLSRLLLSVPPSGALVITALIHNLLRRHPSINCLVHREDGVDEGKGDEGMATNS-- 450

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDL 371
           D A  A + S K GIDHF+  E++P KS AMRSSLWEIDT+ HHYCPP SRF LSL NDL
Sbjct: 451 DNAKTA-MPSQKSGIDHFNSSETDPKKSGAMRSSLWEIDTILHHYCPPASRFALSLGNDL 509

Query: 372 TVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICD 431
           TVRAKTTE+NV DF +GSYATI G EI RRVKQVPLAF+K TP+SLFS++DFAGWTF C+
Sbjct: 510 TVRAKTTEVNVGDFSAGSYATILGAEISRRVKQVPLAFFKATPSSLFSETDFAGWTFKCE 569

Query: 432 KTEENSN 438
           +T +  N
Sbjct: 570 ETPKMIN 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500195|ref|XP_004161032.1| PREDICTED: nucleolar complex protein 4 homolog B-like [Cucumis sativus]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/454 (59%), Positives = 355/454 (78%), Gaps = 29/454 (6%)

Query: 12  NYFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIP 71
           +Y    YFTYIS+++LA++ + + +S D  G        HS+  +E  +   + I+S IP
Sbjct: 184 HYLDVRYFTYISIKELAKTFKAEYMSGDVGG--------HSKEGVEF-IHIVHSIISSIP 234

Query: 72  SMEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIIS 131
            +E++N+ S++ MW  SG +    + +EA +     +KM K ++ N  + LQ L+++ I 
Sbjct: 235 PLENSNQ-SDYTMWVESGDNKVLSDDQEAKQ-----LKMKKNDEENIANTLQVLTSSKIV 288

Query: 132 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVS 191
           ++MK KF+KAWI+FL+LPLP+D+YKEVLV L + VIP+LS PI+L DFLT+SYDIGGV+S
Sbjct: 289 RRMKLKFSKAWISFLKLPLPIDVYKEVLVILDQEVIPYLSKPIILSDFLTKSYDIGGVIS 348

Query: 192 VMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLA 251
           VMALSSLF+LMT++GLEYPNFYEKLYALLVPSIFMAKHRAKFF+LLDSCL+SPLLPAYLA
Sbjct: 349 VMALSSLFLLMTKYGLEYPNFYEKLYALLVPSIFMAKHRAKFFQLLDSCLKSPLLPAYLA 408

Query: 252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIV 311
           AAF KKLSRLS++VPPSGALVI+ALIHNLLRRHPSINCL+HRE+ +E+ ND+S +E+   
Sbjct: 409 AAFAKKLSRLSLVVPPSGALVIIALIHNLLRRHPSINCLVHRENVSESKNDNSTSEE--A 466

Query: 312 DAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDL 371
              T A+   +KPGIDHF+ EE++P+KS+A+RSSLWEID+LRHHYCPPVSR VLSLENDL
Sbjct: 467 AKGTDADTPKMKPGIDHFNYEEADPIKSSALRSSLWEIDSLRHHYCPPVSRLVLSLENDL 526

Query: 372 TVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICD 431
           TVR+KTTEI+VKDF +GSY+TI G+E+++++K+VPLAFY+  PT+LFS+SDFAGW+F   
Sbjct: 527 TVRSKTTEIDVKDFVAGSYSTILGQELKKKLKRVPLAFYQAPPTTLFSESDFAGWSF--- 583

Query: 432 KTEENSNGNKEKNFACLSEENGHISAKRQRIECS 465
                 N + EKN     + + H+SAKRQR+  S
Sbjct: 584 -----DNEHSEKNI----DSSDHLSAKRQRVGSS 608

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474135|ref|XP_004154083.1| PREDICTED: nucleolar complex protein 4 homolog B-like, partial [Cucumis sativus]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/448 (59%), Positives = 353/448 (78%), Gaps = 29/448 (6%)

Query: 18  YFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNN 77
           YFTYIS+++LA++ + + +S D  G        HS+  +E  +   + I+S IP +E++N
Sbjct: 1   YFTYISIKELAKTFKAEYMSGDVGG--------HSKEGVEF-IHIVHSIISSIPPLENSN 51

Query: 78  EKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISKKMKSK 137
           + S++ MW  SG +    + +EA +     +KM K ++ N  + LQ L+++ I ++MK K
Sbjct: 52  Q-SDYTMWVESGDNKVLSDDQEAKQ-----LKMKKNDEENIANTLQVLTSSKIVRRMKLK 105

Query: 138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
           F+KAWI+FL+LPLP+D+YKEVLV L + VIP+LS PI+L DFLT+SYDIGGV+SVMALSS
Sbjct: 106 FSKAWISFLKLPLPIDVYKEVLVILDQEVIPYLSKPIILSDFLTKSYDIGGVISVMALSS 165

Query: 198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
           LF+LMT++GLEYPNFYEKLYALLVPSIFMAKHRAKFF+LLDSCL+SPLLPAYLAAAF KK
Sbjct: 166 LFLLMTKYGLEYPNFYEKLYALLVPSIFMAKHRAKFFQLLDSCLKSPLLPAYLAAAFAKK 225

Query: 258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVA 317
           LSRLS++VPPSGALVI+ALIHNLLRRHPSINCL+HRE+ +E+ ND+S +E+      T A
Sbjct: 226 LSRLSLVVPPSGALVIIALIHNLLRRHPSINCLVHRENVSESKNDNSTSEE--AAKGTDA 283

Query: 318 NISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKT 377
           +   +KPGIDHF+ EE++P+KS+A+RSSLWEID+LRHHYCPPVSR VLSLENDLTVR+KT
Sbjct: 284 DTPKMKPGIDHFNYEEADPIKSSALRSSLWEIDSLRHHYCPPVSRLVLSLENDLTVRSKT 343

Query: 378 TEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTEENS 437
           TEI+VKDF +GSY+TI G+E+++++K+VPLAFY+  PT+LFS+SDFAGW+F         
Sbjct: 344 TEIDVKDFVAGSYSTILGQELKKKLKRVPLAFYQAPPTTLFSESDFAGWSF--------D 395

Query: 438 NGNKEKNFACLSEENGHISAKRQRIECS 465
           N + EKN     + + H+SAKRQR+  S
Sbjct: 396 NEHSEKNI----DSSDHLSAKRQRVGSS 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22325731|ref|NP_179316.2| CCAAT-binding factor [Arabidopsis thaliana] gi|330251509|gb|AEC06603.1| CCAAT-binding factor [Arabidopsis thaliana]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/422 (63%), Positives = 323/422 (76%), Gaps = 18/422 (4%)

Query: 13  YFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPS 72
           Y    YFTYISMEK  ++LE   +S D+T   +  +ES S+ S+ELS+RK Y +LS+IP 
Sbjct: 171 YIDVRYFTYISMEKFVKTLEA-SVSADRTVIENNEAESDSKESLELSVRKIYQVLSQIPP 229

Query: 73  MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISK 132
            E   EKS+HEMWSGS  S  E   K   KK KT       EK ++      LS A ISK
Sbjct: 230 PEKQAEKSQHEMWSGSDESISE---KPTDKKKKT-------EKGDST----LLSPATISK 275

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSV 192
           +MK KFTKAWI+FLRLPLP+D+YKEVL ++H  VIP LSNP MLCDFLT+SYDIGGVVSV
Sbjct: 276 RMKLKFTKAWISFLRLPLPIDVYKEVLASIHLTVIPHLSNPTMLCDFLTKSYDIGGVVSV 335

Query: 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAA 252
           MALSSLFILMTQHGLEYP FYEKLYALLVPS+F+AKHRAKF +LLD+CL+S +LPAYLAA
Sbjct: 336 MALSSLFILMTQHGLEYPFFYEKLYALLVPSVFVAKHRAKFLQLLDACLKSSMLPAYLAA 395

Query: 253 AFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVD 312
           +F KKLSRLS+ +PP+G+LVI ALI+NLLRR+P+IN L+     N    D++  E    +
Sbjct: 396 SFTKKLSRLSLSIPPAGSLVITALIYNLLRRNPTINHLVQEIVENA---DEANTEAGEHN 452

Query: 313 AATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLT 372
            +    I   K GID+F+++ES+P KS A++SSLWEIDTLRHHYCPPVSRF+ SLE +LT
Sbjct: 453 ESQPKTIKKRKLGIDYFNNQESDPKKSGALKSSLWEIDTLRHHYCPPVSRFISSLETNLT 512

Query: 373 VRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDK 432
           +R+KTTE+ ++DFCSGSYATIFG+EIRRRVKQVPLAFYKT PTSLF+DSDF GWTF   +
Sbjct: 513 IRSKTTEMKIEDFCSGSYATIFGDEIRRRVKQVPLAFYKTVPTSLFADSDFPGWTFTIPQ 572

Query: 433 TE 434
            E
Sbjct: 573 EE 574

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832324|ref|XP_002884044.1| hypothetical protein ARALYDRAFT_480608 [Arabidopsis lyrata subsp. lyrata] gi|297329884|gb|EFH60303.1| hypothetical protein ARALYDRAFT_480608 [Arabidopsis lyrata subsp. lyrata]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/422 (62%), Positives = 327/422 (77%), Gaps = 18/422 (4%)

Query: 13  YFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPS 72
           Y    YFTYISMEK  ++LE   +S D+T   +  +E+ S+ S+ELS+RK Y +LS+IP 
Sbjct: 176 YIDVRYFTYISMEKFVKTLEA-SVSADRTAIENSEAENDSKESLELSVRKIYQVLSQIPP 234

Query: 73  MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISK 132
            E   EKS HEMWSGS  SS E   K   KK KT+           +S L  LS   ISK
Sbjct: 235 PEKLAEKSHHEMWSGSDESSSE---KPTDKKKKTE---------EGDSTL--LSPTTISK 280

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSV 192
           +MK KFTKAWI+FLRLPLP+D+YKEVL ++H  VIP LSNP MLCDFLT+SYDIGGVVSV
Sbjct: 281 RMKLKFTKAWISFLRLPLPIDVYKEVLASIHLTVIPHLSNPTMLCDFLTKSYDIGGVVSV 340

Query: 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAA 252
           MALSSLFILMTQHGLEYPNFYEKLYALLVPS+F+AKHRAKF +LLD+CL+S +LPAYLAA
Sbjct: 341 MALSSLFILMTQHGLEYPNFYEKLYALLVPSVFVAKHRAKFLQLLDACLKSSMLPAYLAA 400

Query: 253 AFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVD 312
           +F KKLSRLS+ +PP+G+LVI ALI+NLLRRHP+IN L+ +E    T+  +++A++   +
Sbjct: 401 SFTKKLSRLSLSIPPAGSLVITALIYNLLRRHPTINHLV-QETVENTNEGNTEADEH--N 457

Query: 313 AATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLT 372
            +    I   K GID+F+++ES+P KS A++SSLWEIDTLRHHYCPPVSRF+ SLE +LT
Sbjct: 458 ESQPKTIKKRKLGIDYFNNQESDPKKSGALKSSLWEIDTLRHHYCPPVSRFISSLETNLT 517

Query: 373 VRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDK 432
           +R+KTTE+ ++DF SGSYATIFG+EIRRRVKQVPLAFYKT PTSLF+DSDF GW+F   +
Sbjct: 518 IRSKTTEMKIEDFSSGSYATIFGDEIRRRVKQVPLAFYKTVPTSLFADSDFPGWSFTIPQ 577

Query: 433 TE 434
            E
Sbjct: 578 EE 579

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18086412|gb|AAL57663.1| At2g17250/T23A1.11 [Arabidopsis thaliana]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/422 (62%), Positives = 323/422 (76%), Gaps = 18/422 (4%)

Query: 13  YFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPS 72
           Y    YFTYISMEK  ++LE   +S D+T   +  +ES S+ S+ELS+RK Y +LS+IP 
Sbjct: 171 YIDVRYFTYISMEKFVKTLEA-SVSADRTVIENNEAESDSKESLELSVRKIYQVLSQIPP 229

Query: 73  MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISK 132
            E   EKS+HEMWSGS  S  E   K   KK KT       EK ++      LS A ISK
Sbjct: 230 PEKQAEKSQHEMWSGSDESISE---KPTDKKKKT-------EKGDST----LLSPATISK 275

Query: 133 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSV 192
           +MK KFTKAWI+FLRLPLP+D+YKEVL ++H  VIP LSNP MLCDFLT+SYDIGGVVSV
Sbjct: 276 RMKLKFTKAWISFLRLPLPIDVYKEVLASIHLTVIPHLSNPTMLCDFLTKSYDIGGVVSV 335

Query: 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAA 252
           MALSSLFILMT+HGLEYP FYEKLYALLVPS+F+AKHRAKF +LLD+CL+S +LPAYLAA
Sbjct: 336 MALSSLFILMTRHGLEYPFFYEKLYALLVPSVFVAKHRAKFLQLLDACLKSSMLPAYLAA 395

Query: 253 AFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVD 312
           +F KKLSRLS+ +PP+G+LVI ALI+NLLRR+P+IN L+     N    D++  E    +
Sbjct: 396 SFTKKLSRLSLSIPPAGSLVITALIYNLLRRNPTINHLVQEIVENA---DEANTEAGEHN 452

Query: 313 AATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLT 372
            +    I   K GID+F+++ES+P KS A++SSLWEIDTLRHHYCPPVSRF+ SLE +LT
Sbjct: 453 ESQPKTIKKRKLGIDYFNNQESDPKKSGALKSSLWEIDTLRHHYCPPVSRFISSLETNLT 512

Query: 373 VRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDK 432
           +R+KTTE+ ++DFCSGSYATIFG+EIRRRVKQVPLAFYKT PTSLF+DSDF GWTF   +
Sbjct: 513 IRSKTTEMKIEDFCSGSYATIFGDEIRRRVKQVPLAFYKTVPTSLFADSDFPGWTFTIPQ 572

Query: 433 TE 434
            E
Sbjct: 573 EE 574

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
TAIR|locus:2059657	577	EMB2762 "AT2G17250" [Arabidops	0.632	0.509	0.700	5.7e-124
UNIPROTKB|F1Q279	516	NOC4L "Uncharacterized protein	0.367	0.331	0.508	9.9e-56
UNIPROTKB|F1P3D2	519	EP400 "Uncharacterized protein	0.356	0.319	0.5	9.9e-54
UNIPROTKB|Q5ZJC7	508	NOC4L "Nucleolar complex prote	0.356	0.326	0.5	9.9e-54
MGI|MGI:2140843	516	Noc4l "nucleolar complex assoc	0.369	0.333	0.491	9.9e-54
UNIPROTKB|F1RFR4	516	NOC4L "Uncharacterized protein	0.369	0.333	0.505	1.3e-53
RGD|1310661	516	Noc4l "nucleolar complex assoc	0.369	0.333	0.485	1.6e-53
ZFIN|ZDB-GENE-050522-98	525	noc4l "nucleolar complex assoc	0.369	0.327	0.476	2.6e-51
CGD|CAL0002495	562	NOC4 [Candida albicans (taxid:	0.369	0.306	0.436	2.5e-47
UNIPROTKB|Q59U49	562	CaO19.1902 "Putative uncharact	0.369	0.306	0.436	2.5e-47

TAIR|locus:2059657 EMB2762 "AT2G17250" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
 Identities = 208/297 (70%), Positives = 250/297 (84%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             FTKAWI+FLRLPLP+D+YKEVL ++H  VIP LSNP MLCDFLT+SYDIGGVVSVMALSS
Sbjct:   281 FTKAWISFLRLPLPIDVYKEVLASIHLTVIPHLSNPTMLCDFLTKSYDIGGVVSVMALSS 340

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFILMTQHGLEYP FYEKLYALLVPS+F+AKHRAKF +LLD+CL+S +LPAYLAA+F KK
Sbjct:   341 LFILMTQHGLEYPFFYEKLYALLVPSVFVAKHRAKFLQLLDACLKSSMLPAYLAASFTKK 400

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVA 317
             LSRLS+ +PP+G+LVI ALI+NLLRR+P+IN L+     N    D++  E    + +   
Sbjct:   401 LSRLSLSIPPAGSLVITALIYNLLRRNPTINHLVQEIVENA---DEANTEAGEHNESQPK 457

Query:   318 NISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKT 377
              I   K GID+F+++ES+P KS A++SSLWEIDTLRHHYCPPVSRF+ SLE +LT+R+KT
Sbjct:   458 TIKKRKLGIDYFNNQESDPKKSGALKSSLWEIDTLRHHYCPPVSRFISSLETNLTIRSKT 517

Query:   378 TEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTE 434
             TE+ ++DFCSGSYATIFG+EIRRRVKQVPLAFYKT PTSLF+DSDF GWTF   + E
Sbjct:   518 TEMKIEDFCSGSYATIFGDEIRRRVKQVPLAFYKTVPTSLFADSDFPGWTFTIPQEE 574

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

UNIPROTKB|F1Q279 NOC4L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 87/171 (50%), Positives = 120/171 (70%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F   W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLTR+YD+GG +S++AL+ 
Sbjct:   252 FQLMWLGFLKHELPLGLYKKVLVIMHDSILPHLAQPSLMIDFLTRAYDMGGAISLLALNG 311

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFIL+ QH LEYP+FY KLY LL PSIF  K+RA+FF L D  L S  LPAYL AAF K+
Sbjct:   312 LFILIHQHNLEYPDFYRKLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKR 371

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEK 308
             LSRL++  PP   L+++  I NLLRRHP+   L+H   G+E  +D    E+
Sbjct:   372 LSRLALTAPPEALLMVLPFICNLLRRHPACRVLVHHPLGHELDSDPFDPEE 422

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1P3D2 EP400 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 462 (167.7 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 83/166 (50%), Positives = 122/166 (73%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F + W+TFL+  LP  +YK+VLV LH +++P+++ P ++ DFLT +Y +GG +S++AL+ 
Sbjct:   255 FERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGVGGAISLLALNG 314

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFIL+ QH LEYP+FY+KLY+LL PSI+  K+RA+FF L D  L S  LPAYL AAF+K+
Sbjct:   315 LFILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLADLFLSSSHLPAYLVAAFIKR 374

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDD 303
             LSRL++  PP   L+++  I NL RRHP+   L+HR +G +  ++D
Sbjct:   375 LSRLALTAPPEALLMVIPFICNLFRRHPACKVLMHRPNGPQDLSED 420

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q5ZJC7 NOC4L "Nucleolar complex protein 4 homolog" [Gallus gallus (taxid:9031)]

 Score = 462 (167.7 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 83/166 (50%), Positives = 122/166 (73%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F + W+TFL+  LP  +YK+VLV LH +++P+++ P ++ DFLT +Y +GG +S++AL+ 
Sbjct:   244 FERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGVGGAISLLALNG 303

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFIL+ QH LEYP+FY+KLY+LL PSI+  K+RA+FF L D  L S  LPAYL AAF+K+
Sbjct:   304 LFILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLADLFLSSSHLPAYLVAAFIKR 363

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDD 303
             LSRL++  PP   L+++  I NL RRHP+   L+HR +G +  ++D
Sbjct:   364 LSRLALTAPPEALLMVIPFICNLFRRHPACKVLMHRPNGPQDLSED 409

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

MGI|MGI:2140843 Noc4l "nucleolar complex associated 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 454 (164.9 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 85/173 (49%), Positives = 121/173 (69%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F + W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLT + D+GG +S++AL+ 
Sbjct:   252 FQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAISLLALNG 311

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFIL+ +H LEYP+FY+KLY LL PSIF  K+RA+FF L D  L S  LPAYL AAF K+
Sbjct:   312 LFILIHKHNLEYPDFYQKLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKR 371

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDD-SKAEKE 309
             L+RL++  PP   L+++ LI NLLRRHP+   ++HR  G E   D     EK+
Sbjct:   372 LARLALTAPPEALLMVLPLICNLLRRHPACRVMVHRPQGPELDADPYDPTEKD 424

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RFR4 NOC4L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 456 (165.6 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 87/172 (50%), Positives = 120/172 (69%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F   W+ FL+  LP+ I K+VLV +H +++P L+ P ++ DFLTR+YDIGG +S++AL+ 
Sbjct:   252 FQVMWLGFLKHQLPLRICKKVLVIMHDSILPHLAQPTLMIDFLTRAYDIGGAISLLALNG 311

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFIL+ +H LEYP+FY KLY+LL PS+F  K+RA+FF L D  L S  LPAYL AAF K+
Sbjct:   312 LFILIHKHNLEYPDFYRKLYSLLDPSVFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKR 371

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 309
             L+RL++  PP   L+++  I NLLRRHP+   L+HR  G E   D    E+E
Sbjct:   372 LARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPRGPELDADPYDPEEE 423

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1310661 Noc4l "nucleolar complex associated 4 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 451 (163.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 84/173 (48%), Positives = 121/173 (69%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F + W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLT + D+GG +S++AL+ 
Sbjct:   252 FQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAISLLALNG 311

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LFIL+ +H LEYP+FY++LY LL PSIF  K+RA+FF L D  L S  LPAYL AAF K+
Sbjct:   312 LFILIHKHNLEYPDFYQRLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKR 371

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDD-SKAEKE 309
             L+RL++  PP   L+++ LI NLLRRHP+   ++HR  G E   D     EK+
Sbjct:   372 LARLALTAPPEALLMVLPLICNLLRRHPACRVMVHRPQGPELDADPYDPTEKD 424

GO:0005730 "nucleolus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-050522-98 noc4l "nucleolar complex associated 4 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 440 (159.9 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 82/172 (47%), Positives = 119/172 (69%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSS 197
             F + W+ FLR  LP  +YK++LV LH +++P +S+P ++ DFL+ +YDIGG +S+ AL+ 
Sbjct:   261 FEQMWLLFLRYKLPGSMYKKILVILHESILPQMSDPKLMMDFLSAAYDIGGAISLSALNG 320

Query:   198 LFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKK 257
             LF+ + +H L+YP+FY+KLY LL PSIF  K+RA+FF L +  L S  LP YL AAFVK+
Sbjct:   321 LFVPIHEHNLDYPDFYKKLYNLLDPSIFHVKYRARFFHLANIFLSSTHLPVYLVAAFVKR 380

Query:   258 LSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 309
             L+RLS+  PP+  L+++  I NL+RRHPS   L+HR    +   DD    +E
Sbjct:   381 LARLSLTAPPTALLILLPFICNLIRRHPSCRVLIHRPSAADEPCDDPYVMEE 432

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

CGD|CAL0002495 NOC4 [Candida albicans (taxid:5476)]

 Score = 383 (139.9 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
 Identities = 76/174 (43%), Positives = 112/174 (64%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGG--VVSVMAL 195
             F K+ I  L  PL  + YK VL  LH+ +IP++S P  L DFLT  YD+    +V ++AL
Sbjct:   291 FQKSVIAMLSYPLLQEQYKSVLTILHKRIIPYMSQPQSLMDFLTDCYDLTDDLIVPILAL 350

Query:   196 SSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFV 255
             +SL+ LM  + LEYP+FY KLY+LL P +   K+R++FF L D  L S  L A L A+F+
Sbjct:   351 NSLYELMKNYNLEYPDFYSKLYSLLTPELLYTKYRSRFFRLCDLFLSSTHLSANLVASFI 410

Query:   256 KKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 309
             KKL+R+S+    SG ++I+  I+NLL+RHP+   +LH+ED    + D   +E++
Sbjct:   411 KKLARISLAASASGVVIIIPFIYNLLKRHPTCMIMLHKEDTESGYQDPFNSEEK 464

GO:0003674 "molecular_function" evidence=ND

GO:0035690 "cellular response to drug" evidence=IMP

GO:0030692 "Noc4p-Nop14p complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59U49 CaO19.1902 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 383 (139.9 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
 Identities = 76/174 (43%), Positives = 112/174 (64%)

Query:   138 FTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGG--VVSVMAL 195
             F K+ I  L  PL  + YK VL  LH+ +IP++S P  L DFLT  YD+    +V ++AL
Sbjct:   291 FQKSVIAMLSYPLLQEQYKSVLTILHKRIIPYMSQPQSLMDFLTDCYDLTDDLIVPILAL 350

Query:   196 SSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFV 255
             +SL+ LM  + LEYP+FY KLY+LL P +   K+R++FF L D  L S  L A L A+F+
Sbjct:   351 NSLYELMKNYNLEYPDFYSKLYSLLTPELLYTKYRSRFFRLCDLFLSSTHLSANLVASFI 410

Query:   256 KKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 309
             KKL+R+S+    SG ++I+  I+NLL+RHP+   +LH+ED    + D   +E++
Sbjct:   411 KKLARISLAASASGVVIIIPFIYNLLKRHPTCMIMLHKEDTESGYQDPFNSEEK 464

GO:0003674 "molecular_function" evidence=ND

GO:0035690 "cellular response to drug" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IX.175.1	hypothetical protein (575 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.2964.1	hypothetical protein (516 aa)				•	•		•		0.653
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•	•		•		0.624
	eugene3.00640202	hypothetical protein (1181 aa)				•	•		•		0.577
	eugene3.00160311	hypothetical protein (691 aa)				•	•		•		0.554
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•	•		•		0.544
	gw1.86.17.1	hypothetical protein (573 aa)				•					0.509
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•					0.472
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.470
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•					0.470
	grail3.0101007501	hypothetical protein (229 aa)				•	•		•		0.463

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	465
pfam03914	151	pfam03914, CBF, CBF/Mak21 family	1e-51
COG5117	657	COG5117, NOC3, Protein involved in the nuclear exp	0.002

>gnl|CDD|217788 pfam03914, CBF, CBF/Mak21 family

 Score =  170 bits (434), Expect = 1e-51
 Identities = 67/176 (38%), Positives = 97/176 (55%), Gaps = 27/176 (15%)

Query: 190 VSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAK-FFELLDSCLRSPLLPA 248
            S++AL  LF LM+ H L+   FY KLY LL+  +  + ++++ F  LLD  L+S  LPA
Sbjct: 1   TSILALFLLFQLMSGHNLDLDRFYRKLYRLLLDKLLHSSYKSRLFLRLLDKALKSDHLPA 60

Query: 249 YLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEK 308
              AAFVK+L +L++  PPS AL I+ LI NLL+RHP++  LLH E+             
Sbjct: 61  QRVAAFVKRLLQLALHAPPSFALGILPLIRNLLKRHPNLKSLLHTEERGG---------- 110

Query: 309 EIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFV 364
                               +D EE +P  SNA+ SSLWE++ L++HY P V++  
Sbjct: 111 ----------------EDGPYDPEERDPEYSNALNSSLWELELLQNHYHPSVAKLA 150

Length = 151

>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 27/117 (23%)

Query: 251 AAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEI 310
              F K+L       P      I+ +   L  R+   + L   E                
Sbjct: 562 HVIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEF--------------- 606

Query: 311 VDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSL 367
                         G  + D   SNP  SN+  + L+E   L+ HY P VS+    L
Sbjct: 607 ------------DIGAGNVDSIPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKEL 651

Length = 657

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
KOG2154	505	consensus Predicted nucleolar protein involved in	100.0
KOG2038	988	consensus CAATT-binding transcription factor/60S r	100.0
PF03914	164	CBF: CBF/Mak21 family; InterPro: IPR005612 This do	100.0
COG5593	821	Nucleic-acid-binding protein possibly involved in	100.0
COG5117	657	NOC3 Protein involved in the nuclear export of pre	99.87
KOG2153	704	consensus Protein involved in the nuclear export o	99.84
KOG2153	704	consensus Protein involved in the nuclear export o	98.02

>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-66  Score=529.56  Aligned_cols=326  Identities=38%  Similarity=0.623  Sum_probs=283.8

Q ss_pred             ccccceeeehHHHHHHHHHhhccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 012355           11 INYFIAFYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIPSMEDNNEKSEHEMWSGSGS   90 (465)
Q Consensus        11 ~~y~Dvr~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~   90 (465)
                      -.|+|.+|.+|....+.+.+.....+.|             +    +.+..|.+.+++.++.+-.....+   .|..++.
T Consensus       166 ~~~t~k~f~~~~~~~~~~~s~~~q~~~D-------------p----~v~~~N~~~~ls~v~~p~~~~S~~---~~~~~~~  225 (505)
T KOG2154|consen  166 VGYTDKYFKYFDITLTQVRSVVPQHPTD-------------P----PVIANNELEILSLVSLPLSVSSTS---SYVLEPI  225 (505)
T ss_pred             ccchhHHHHHHHHHHHHHHHhccCCCCC-------------C----chhhcchHHHhhhccCCCCcccHh---hhccccC
Confidence            4589999999998888887765422211             1    477889999999998754322222   2332211


Q ss_pred             CCccchhHHhhhhhhccccCccccccCcchhhhhchHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccc
Q 012355           91 SSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL  170 (465)
Q Consensus        91 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~awL~~Lk~al~~~l~k~vL~~L~k~i~pHl  170 (465)
                                            +            +.+...++.|+.|+.+|+++++..++..+++++|.+++++|+||+
T Consensus       226 ----------------------p------------~~~~~~~~~~k~f~~~Wls~l~~~ls~~lykkil~vih~rvip~l  271 (505)
T KOG2154|consen  226 ----------------------P------------KQTENEKQIRKSFQNMWLSSLNGELSLKLYKKILLVIHKRVIPHL  271 (505)
T ss_pred             ----------------------c------------cccccHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhHhh
Confidence                                  0            111123456999999999999999999999999999999999999


Q ss_pred             CChhhHhhHHHHhhc-cCcchHHHHHHHHHHHHHhhCCCchhHHHHHHHhhCccccccccHHHHHHHHHHHhcCCCChHH
Q 012355          171 SNPIMLCDFLTRSYD-IGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAY  249 (465)
Q Consensus       171 ~Np~ll~DFL~d~~d-~gg~~SllAL~~LF~Li~~~Nld~~rFY~~LY~LLdp~l~~s~~ra~fL~LL~~~Lks~~lp~~  249 (465)
                      ..|..++|||+++|| .||++||+||+|||+||++||++||.||.+||+||+|++||.+||+|||+|+|.||+|+|||++
T Consensus       272 ~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~Ll~Pslfh~KyRarff~L~D~FLSSTHLpa~  351 (505)
T KOG2154|consen  272 ISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYALLNPSLFHVKYRARFFRLADLFLSSTHLPAY  351 (505)
T ss_pred             cChHHHHHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            999999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCC
Q 012355          250 LAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHF  329 (465)
Q Consensus       250 RVAAFiKRLlqlaL~~pP~~~~~iL~lI~nLLkrhP~l~~LL~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Y  329 (465)
                      .||||+|||+|+||.+||.+++.+|+||+||++|||+|+.|+|++...+                         ...|||
T Consensus       352 LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~-------------------------~~~Dpf  406 (505)
T KOG2154|consen  352 LVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALS-------------------------LYDDPF  406 (505)
T ss_pred             HHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhccccccc-------------------------CCCCCC
Confidence            9999999999999999999999999999999999999999999987632                         234999


Q ss_pred             CCCCCCCcCCCCCcchhHHHHHHhhccChHHHHHHHHhhccccccccccccccCcCCCCcHHHHHHHHHhhhcCCC-Ccc
Q 012355          330 DDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQV-PLA  408 (465)
Q Consensus       330 dp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~L~~g~~~~~k~~~y~~~dfld~sy~~~ld~el~k~~k~~-p~~  408 (465)
                      |+.+.||..++|++||||||.+||.||||+|+..|+.+.+++++    ++|+++|++|++|..++|+|++|+.|.. |++
T Consensus       407 d~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k----~ef~~ed~ld~~y~~l~d~el~~kgk~~p~le  482 (505)
T KOG2154|consen  407 DNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYK----PEFGLEDGLDSKYSVLQDGELSRKGKRFPPLE  482 (505)
T ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc----ccccCcchhhhhhHHhhcchhhcccCCCCCcc
Confidence            99999999999999999999999999999999999999999886    6899999999999999999999999954 555


Q ss_pred             cccCCCCccCCCC
Q 012355          409 FYKTTPTSLFSDS  421 (465)
Q Consensus       409 ~~~~~p~~lf~~~  421 (465)
                      +.+  ++++++..
T Consensus       483 fe~--~t~~~g~~  493 (505)
T KOG2154|consen  483 FER--RTGLGGRF  493 (505)
T ss_pred             ccc--ccccCCch
Confidence            544  78888763

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=100.00  E-value=6.8e-50  Score=427.80  Aligned_cols=254  Identities=26%  Similarity=0.374  Sum_probs=220.6

Q ss_pred             HHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhcccCChhhHhhHHHHhhccCcchHHHHHHHHHHHHHhhCC
Q 012355          133 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL  207 (465)
Q Consensus       133 ~~k~~~~~awL~~Lk~al~-----~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~d~~d~gg~~SllAL~~LF~Li~~~Nl  207 (465)
                      +..+++.+|.|||+|||+|     .+.+..++..|++  +.|.+|      |+         +|||||++|||++....+
T Consensus       468 e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFk--l~HssN------FN---------TsVQaLmLlfQvs~~~~~  530 (988)
T KOG2038|consen  468 ELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFK--LTHSSN------FN---------TSVQALMLLFQVSKKNDY  530 (988)
T ss_pred             hhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHH--HHhhcc------cc---------hhHHHHHHHHHHHHhhhh
Confidence            5689999999999999987     5789999999999  999999      99         999999999999999999


Q ss_pred             CchhHHHHHHH-hhCccccccccHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc
Q 012355          208 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS  286 (465)
Q Consensus       208 d~~rFY~~LY~-LLdp~l~~s~~ra~fL~LL~~~Lks~~lp~~RVAAFiKRLlqlaL~~pP~~~~~iL~lI~nLLkrhP~  286 (465)
                      .++|||++||+ ||||+++.++++++||+||+++|+.|. ++.||+||||||+|||++.+|+++||+|.++++|++..|.
T Consensus       531 vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~-ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Karp~  609 (988)
T KOG2038|consen  531 VSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI-NIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKARPT  609 (988)
T ss_pred             hHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhcch
Confidence            99999999999 999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCC--------ChhhHH-HhHHhh---------------------hhhcc-------cCCCCCCCCC
Q 012355          287 INCLLHREDGNETHND--------DSKAEK-EIVDAA---------------------TVANI-------SSIKPGIDHF  329 (465)
Q Consensus       287 l~~LL~~~~~~~~~~~--------~~~~e~-~d~de~---------------------~~~~~-------~~~~~~~d~Y  329 (465)
                      ++.|+.+.+..+.+++        +.++|. .|.|.+                     ..+.+       -+.....++|
T Consensus       610 l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~s~k~E~~~~~~~d~~~~~~~~~~Y  689 (988)
T KOG2038|consen  610 LRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSVSEKKEDLDKKKVDPIGARGAKTPY  689 (988)
T ss_pred             HHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeecccccccccccccccccchhhhhhhhccccccccCCCCC
Confidence            9999976655333221        111111 000000                     00111       1233456799


Q ss_pred             CCCCCCCcCCCCCcchhHHHHHHhhccChHHHHHHHHhhccccccccccccccCcCCCCcHHHHHHHHHhhhcCCCCccc
Q 012355          330 DDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAF  409 (465)
Q Consensus       330 dp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~L~~g~~~~~k~~~y~~~dfld~sy~~~ld~el~k~~k~~p~~~  409 (465)
                      ||..|||.||||..||||||..|.+||||+|+.||+.|.+|..++     |+++|+.|||+++|||+|+.|.+|++-.+.
T Consensus       690 D~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~~i~-----y~g~~L~dfTL~~FLDrF~yRnPK~~t~~~  764 (988)
T KOG2038|consen  690 DPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGEEIQ-----YGGPPLNDFTLMAFLDRFAYRNPKQVTKAR  764 (988)
T ss_pred             CcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCceee-----cCCCchhHHHHHHHHHHHHhcCcccccccC
Confidence            999999999999999999999999999999999999999999875     999999999999999999999999876543

>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis

Probab=100.00  E-value=1.5e-40  Score=306.83  Aligned_cols=162  Identities=41%  Similarity=0.700  Sum_probs=142.9

Q ss_pred             hHHHHHHHHHHHHHhhCCCchhHHHHHHHhh-CccccccccH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCh
Q 012355          190 VSVMALSSLFILMTQHGLEYPNFYEKLYALL-VPSIFMAKHR-AKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPP  267 (465)
Q Consensus       190 ~SllAL~~LF~Li~~~Nld~~rFY~~LY~LL-dp~l~~s~~r-a~fL~LL~~~Lks~~lp~~RVAAFiKRLlqlaL~~pP  267 (465)
                      ++|+||.++|+|++++|+|+++||++||++| +|..++++++ .+||++|+++|+++++|..|||||||||+|+|+++||
T Consensus         1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~   80 (164)
T PF03914_consen    1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP   80 (164)
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence            5899999999999999999999999999966 9999998865 5599999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchhH
Q 012355          268 SGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLW  347 (465)
Q Consensus       268 ~~~~~iL~lI~nLLkrhP~l~~LL~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLW  347 (465)
                      ++++++|.+|++|+++||.|+.|+++++...+.  ++.++++            .....++|+|+.+||++|||..|+||
T Consensus        81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~~--~~~~~~~------------~~~~~~~Y~p~~~dP~~~~a~~s~lW  146 (164)
T PF03914_consen   81 SFALAILALIRKLLKRHPNLKSLLDNEEKKADS--GSEEEDE------------EDKSEDKYDPEKRDPEFSNALASSLW  146 (164)
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHHhcCCcccccc--chhhccc------------ccccccccCcCCCCHhHcCCchhHHH
Confidence            999999999999999999999999887763210  0011111            11356799999999999999999999


Q ss_pred             HHHHHhhccChHHHHHHH
Q 012355          348 EIDTLRHHYCPPVSRFVL  365 (465)
Q Consensus       348 EL~~L~~HyHPsVa~~A~  365 (465)
                      ||.+|++||||+|+.+|+
T Consensus       147 EL~lL~~H~hP~V~~~A~  164 (164)
T PF03914_consen  147 ELNLLRNHYHPSVRQFAR  164 (164)
T ss_pred             HHHHHHHCCCcHHHHHhC
Confidence            999999999999999985

Other proteins containing this domain stimulate transcription from the HSP70 promoter.

>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.6e-32  Score=281.85  Aligned_cols=252  Identities=20%  Similarity=0.199  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhcccCChhhHhhHHHHhhccCcchHHHHHHHHHHHHHhhC
Q 012355          132 KKMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG  206 (465)
Q Consensus       132 ~~~k~~~~~awL~~Lk~al~-----~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~d~~d~gg~~SllAL~~LF~Li~~~N  206 (465)
                      .+..+.+.++.|+|+||+.|     ...++.++.+|++  +.|..+      |+         +++|||++++|..-..-
T Consensus       362 ~eknS~~~savLtG~nRa~pfa~l~~~~~~~Hm~tlfk--ith~~~------fn---------ts~qalmli~q~~~~~~  424 (821)
T COG5593         362 TEKNSFYGSAVLTGCNRAGPFALLFRNAVKSHMMTLFK--ITHEFL------FN---------TSEQALMLIDQEFYRFL  424 (821)
T ss_pred             HhhhhHHHHHHHhcccccCchhhhhHHHHHHHHHHHHh--hhhhhh------hh---------HHHHHHHHHHHHHHHHh
Confidence            34568889999999999855     6888999999999  999998      88         99999999999999999


Q ss_pred             CCchhHHHHHHH-hhCccccccccHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhC
Q 012355          207 LEYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRH  284 (465)
Q Consensus       207 ld~~rFY~~LY~-LLdp~l~~s~~ra~fL~LL~~~Lks~~lp~~RVAAFiKRLlqlaL~-~pP~~~~~iL~lI~nLLkrh  284 (465)
                      ++.+|||+.||. |+||.+..+++++.+++|++++|+-+. ++.||-||+||++|+|-+ +.++++-|....+.+|-..-
T Consensus       425 l~SdryY~~lYesl~dprls~ssKqgiylnllykSL~vd~-nV~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~  503 (821)
T COG5593         425 LDSDRYYTPLYESLIDPRLSESSKQGIYLNLLYKSLRVDT-NVHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMAC  503 (821)
T ss_pred             hccchhhhhHHHHHhhhhhhcccccchhHHHHHHHHHHhc-CchHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHh
Confidence            999999999999 999999999999999999999999998 999999999999999654 67888889999999999999


Q ss_pred             ccccccccccCCCCCCCCC-hhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchhHHHHHHhhccChHHHHH
Q 012355          285 PSINCLLHREDGNETHNDD-SKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRF  363 (465)
Q Consensus       285 P~l~~LL~~~~~~~~~~~~-~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~  363 (465)
                      |.++.|+.+.+-+=+-+.+ +++.|+            .......||.++|||.++||..|||||+..+.+||||+|..+
T Consensus       504 ~~lk~l~tn~~vd~e~e~d~~eeq~d------------kd~krkeydgrkrdpk~anae~s~lwei~~finhfhptv~~~  571 (821)
T COG5593         504 GDLKNLLTNTPVDYEYESDAEEEQGD------------KDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTY  571 (821)
T ss_pred             HHHHHHhcCCCcccccccchhhhhcc------------cchhhhhccCcccCcccccccccchhhhhhhhhhcccHHHHH
Confidence            9999999877652221111 111111            112234699999999999999999999999999999999999


Q ss_pred             HHHhhccccccccccccccCcCCCCcHHHHHHHHHhhhcCCCCcccccCCCCccCC
Q 012355          364 VLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFS  419 (465)
Q Consensus       364 A~~L~~g~~~~~k~~~y~~~dfld~sy~~~ld~el~k~~k~~p~~~~~~~p~~lf~  419 (465)
                      |+.+..|..+      ..-.++.=||+..|||+++.|.+|+--.+--..|-.-||+
T Consensus       572 a~a~v~ge~~------i~kp~l~l~tl~hfldrf~yr~~kqt~~arg~simqpl~~  621 (821)
T COG5593         572 ANAYVTGEEQ------IAKPDLGLFTLSHFLDRFVYRSAKQTNTARGTSIMQPLFS  621 (821)
T ss_pred             HHHhhhhhhh------hcCCCcchhhHHHHHHHHHhcCcccccccccchhhhhhhc
Confidence            9999999865      3345677799999999999999887655543333333443

>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]

Probab=99.87  E-value=2.3e-21  Score=200.28  Aligned_cols=205  Identities=20%  Similarity=0.247  Sum_probs=174.5

Q ss_pred             HHHHHHHHHhccCCCChhhHHHHHHHhhhhhhcccCChhhHhhHHHHhhcc---------Cc---chHHHHHHHHHHHHH
Q 012355          136 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---------GG---VVSVMALSSLFILMT  203 (465)
Q Consensus       136 ~~~~~awL~~Lk~al~~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~d~~d~---------gg---~~SllAL~~LF~Li~  203 (465)
                      +..+..||.+|+. -..+++..||+||.|  +.|++||++++|||..++..         |.   .-+++|+.+.|.|++
T Consensus       406 kiif~~Yf~vLk~-~~k~lig~vleGl~k--~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S  482 (657)
T COG5117         406 KIIFRLYFMVLKG-DRKDLIGYVLEGLVK--YRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS  482 (657)
T ss_pred             HHHHHHHHHHHhc-chHHHHHHHHHHHHH--HHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence            4455677777762 345799999999999  99999999999999998853         21   357899999999987


Q ss_pred             h-----hCCCchhHHHHHHHhhCccccc--------------------------cccHHHHHHHHHH-HhcCCCChHHHH
Q 012355          204 Q-----HGLEYPNFYEKLYALLVPSIFM--------------------------AKHRAKFFELLDS-CLRSPLLPAYLA  251 (465)
Q Consensus       204 ~-----~Nld~~rFY~~LY~LLdp~l~~--------------------------s~~ra~fL~LL~~-~Lks~~lp~~RV  251 (465)
                      .     .|+|...|...||+++.|=-+.                          +-...+++.+++. |+++.+....|.
T Consensus       483 ~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~  562 (657)
T COG5117         483 ATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRH  562 (657)
T ss_pred             hhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHH
Confidence            5     6899999999999986441111                          1234677887765 678888888999


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCC
Q 012355          252 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDD  331 (465)
Q Consensus       252 AAFiKRLlqlaL~~pP~~~~~iL~lI~nLLkrhP~l~~LL~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp  331 (465)
                      .+|-|||+-+|.+.|..++.++|.++..|+.|+|.|..|..++.+                           +|.|.|+|
T Consensus       563 ~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE~~---------------------------ig~g~~~~  615 (657)
T COG5117         563 VIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFD---------------------------IGAGNVDS  615 (657)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCchhh---------------------------cCCccccc
Confidence            999999999999999999999999999999999999999988765                           57899999


Q ss_pred             CCCCCcCCCCCcchhHHHHHHhhccChHHHHHHHHhhcc
Q 012355          332 EESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEND  370 (465)
Q Consensus       332 ~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~L~~g  370 (465)
                      ...||..+|.....|||-.+|.+||+|.|++-|+.|+..
T Consensus       616 ~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~~  654 (657)
T COG5117         616 IPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKS  654 (657)
T ss_pred             CCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHhh
Confidence            999999999999999999999999999999999998764

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.5e-21  Score=204.83  Aligned_cols=220  Identities=18%  Similarity=0.216  Sum_probs=175.6

Q ss_pred             HHHHHHHHHhccCCCChhhHHHHHHHhhhhhhcccCChhhHhhHHHHhhcc------CcchHHHHHHHHHHHHHh----h
Q 012355          136 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQ----H  205 (465)
Q Consensus       136 ~~~~~awL~~Lk~al~~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~d~~d~------gg~~SllAL~~LF~Li~~----~  205 (465)
                      +..+.+|+.+|+...-. ++..+|+||++  +.|++|++++.|++..+-++      +..-+++|++++|.|+++    .
T Consensus       459 kiVFtiYFrILkn~~~t-ll~~vlEGlak--f~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~l  535 (704)
T KOG2153|consen  459 KIVFTIYFRILKNDRYT-LLGAVLEGLAK--FAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKL  535 (704)
T ss_pred             HHHHHHHHHHHhcchhh-HHHHHHhhHHH--HhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceee
Confidence            34455899999877666 99999999999  99999999999998665542      446789999999999986    6


Q ss_pred             CCCchhHHHHHHHhhCcccccccc---HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 012355          206 GLEYPNFYEKLYALLVPSIFMAKH---RAKFFELLDSCL-RSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLL  281 (465)
Q Consensus       206 Nld~~rFY~~LY~LLdp~l~~s~~---ra~fL~LL~~~L-ks~~lp~~RVAAFiKRLlqlaL~~pP~~~~~iL~lI~nLL  281 (465)
                      |+|+.+||.+||+++-| +.....   -.+.++|++..+ +... |..+|.+|++||+.+++|.-+...+    .++..+
T Consensus       536 niD~~~fv~~lY~~l~~-~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~  609 (704)
T KOG2153|consen  536 NIDLGKFVDHLYKMLFP-MNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRD  609 (704)
T ss_pred             ccCHHHHHHHHHHHhcc-cccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHH
Confidence            89999999999998766 222222   347889999875 4555 8888999999999999998877666    667777


Q ss_pred             HhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchhHHHHHHhhccChHHH
Q 012355          282 RRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVS  361 (465)
Q Consensus       282 krhP~l~~LL~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa  361 (465)
                      ..++.|..|+.++                                        -|+||++....|||+.+++  |||.|+
T Consensus       610 ~~fsk~~~~~~~~----------------------------------------~pe~~s~a~~al~e~~l~r--y~~~~~  647 (704)
T KOG2153|consen  610 IEFSKRLNLLDSE----------------------------------------TPEYCSIASLALFEKLLLR--YHPISR  647 (704)
T ss_pred             HHhhhhhhhhhcc----------------------------------------CccccccccHHHHHHHHHh--cchHHH
Confidence            7888877776432                                        1999999999999999999  999999


Q ss_pred             HHHHHhhccccccccccccccCcCCCCcHHHHHHHHHhhhcCCCCcccccCCCCccCCCCCCCCceeccCcc
Q 012355          362 RFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKT  433 (465)
Q Consensus       362 ~~A~~L~~g~~~~~k~~~y~~~dfld~sy~~~ld~el~k~~k~~p~~~~~~~p~~lf~~~d~~~~~f~~~~~  433 (465)
                      .||..+.-|.+.      |         ....++.|+++.           ....||.. +...|.|+|+++
T Consensus       648 ~~a~~~~~G~~~------~---------~~~a~~p~~s~~-----------sa~~L~~~-~~~~~~~~P~v~  692 (704)
T KOG2153|consen  648 LMASEIAIGVGA------T---------GEGALPPELSNL-----------SAAELFEQ-DLLEMHYNPTVP  692 (704)
T ss_pred             HHHHHHhhcCCc------c---------CcCCCCccccCc-----------hHHHHhhh-HHHHhccCCCCC
Confidence            999999999885      2         123334444444           45678876 888999999988

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=9.7e-06  Score=88.50  Aligned_cols=146  Identities=24%  Similarity=0.322  Sum_probs=109.6

Q ss_pred             HHHHHHHHhhCCCc--hhHHHHHHHhhCccccccc--------cHHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHhcc
Q 012355          196 SSLFILMTQHGLEY--PNFYEKLYALLVPSIFMAK--------HRAKFFELL-DSCLRSPLLPAYLAAAFVKKLSRLSIL  264 (465)
Q Consensus       196 ~~LF~Li~~~Nld~--~rFY~~LY~LLdp~l~~s~--------~ra~fL~LL-~~~Lks~~lp~~RVAAFiKRLlqlaL~  264 (465)
                      .+++.++-..|+++  +.||. +-+++||.+....        .+-+++.+. ..+..+..++.+|..+|-||+.-++.+
T Consensus       544 ~~lY~~l~~~~~~~~~~~~~~-ilr~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~  622 (704)
T KOG2153|consen  544 DHLYKMLFPMNLGPDDDGFAI-ILRLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSE  622 (704)
T ss_pred             HHHHHHhcccccCCCcchHHH-HHHHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhcc
Confidence            44555555444443  45554 3456666322211        122333332 234466778999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcc
Q 012355          265 VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRS  344 (465)
Q Consensus       265 ~pP~~~~~iL~lI~nLLkrhP~l~~LL~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~S  344 (465)
                      .|....++.++|+-.+|-|++.+-.++..+..                           .|.+.|.+...+|+.+|...+
T Consensus       623 ~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~---------------------------~G~~~~~~~a~~p~~s~~sa~  675 (704)
T KOG2153|consen  623 TPEYCSIASLALFEKLLLRYHPISRLMASEIA---------------------------IGVGATGEGALPPELSNLSAA  675 (704)
T ss_pred             CccccccccHHHHHHHHHhcchHHHHHHHHHh---------------------------hcCCccCcCCCCccccCchHH
Confidence            99999999999999999998888777765543                           578999999999999999999


Q ss_pred             hhHHHHHHhhccChHHHHHHHHhhc
Q 012355          345 SLWEIDTLRHHYCPPVSRFVLSLEN  369 (465)
Q Consensus       345 sLWEL~~L~~HyHPsVa~~A~~L~~  369 (465)
                      .|||-.+|+.||+|+|..-++.+..
T Consensus       676 ~L~~~~~~~~~~~P~v~~~~kql~~  700 (704)
T KOG2153|consen  676 ELFEQDLLEMHYNPTVPLSLKQLYK  700 (704)
T ss_pred             HHhhhHHHHhccCCCCCchHHHHHH
Confidence            9999999999999999988777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	465
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 55/366 (15%), Positives = 107/366 (29%), Gaps = 103/366 (28%)

Query: 45  DENSESHSRASIELSLRKSY-YILSKI------PSMEDNNEKSEHEMWSGSGSSSEEGNL 97
            +  E   +  +E  LR +Y +++S I      PSM       + +          + N+
Sbjct: 73  SKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 98  KEASKKSKTKVKMPKAEKSNN----------NSCLQALSAAIISKKMKSKFTK--AWITF 145
                  K +  + +   + N           + + AL   + S K++ K      W+  
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCL-SYKVQCKMDFKIFWLNL 189

Query: 146 LRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQH 205
                P  + + +   L++    + S      +   R + I        L  L       
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSK--- 241

Query: 206 GLEYPNFYEKLYALLV------PSIFMAKHRAKFFELLDSC------------------- 240
              Y N       LLV         + A      F L  SC                   
Sbjct: 242 --PYEN------CLLVLLNVQNAKAWNA------FNL--SCKILLTTRFKQVTDFLSAAT 285

Query: 241 --------LRSPLLPAYLAAAFVKKLS-RLSILVPP---SGALVIMALIHNLLRRHPSIN 288
                       L P  + +  +K L  R   L P    +     +++I   +R   +  
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLA-- 342

Query: 289 CLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGI--DHFDD----EESNPVKSNAM 342
                 D  +  N D      I++++    ++ ++P      FD       S  + +  +
Sbjct: 343 ----TWDNWKHVNCDKL--TTIIESS----LNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 343 RSSLWE 348
            S +W 
Sbjct: 393 -SLIWF 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00