Citrus Sinensis ID: 012367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTPYT
Secondary Structure (PSIPRED)
ccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEcccccccccccccccccEEcccccccEEEEcccccccEEEEccccEEEEcccccEEEccccccccEEEEEccccccEEEEEEEEccccccEEEccccccEEEEEccccEEEEEEEcEEEEEEccccccccccccccccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEccccccEEEEcccccEEEEEcccccEEEEccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEccccccEEEEccccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEccccEEEEEEcccccEEEccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHccEEEEcccccEEEcccccccEEEcccccccEEEEEEcccccEEEccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEccccc
Coil and Loop (DISEMBL)
mlssdegvddvffdstdclsfeesvvaeeelgpgkldydiwmseprsVKERRKNFLCKmglvefsskneitfddssqmmgldritecsgavsgssmnradenlncfdremdSEANCMVDELEQDQMNECVVtlegesngfsqsvdkfenpfpeckgvniKKVKKLWKRIISMKKRNVetcmsekrkpnsekpkankMEVKQNKKKCMEFTALYTSQEIQAHkgciwtlkfspdgrylasggedgVVRIWHVTSVAAScksftddggfgsnakegkikfgkkksshvpvvipdevfqieesplqelhghkgdvldlawsnsNYLLSCSMDKTVRMWQVGCnqclnvfdhhnyvtcvqfnpiddnyfisgsidgkVRIWGVCEKRVVDWADVRDVISAIcyipdgkgfiVGSITGTCHFykasgndlklekvdfhdrkktsgnkitgiqgrisknydnfrrfqtpyt
Flexible Loop (DISEMBL)
mlssdegvddvffdstDCLSFeesvvaeeelgpgkldydiwMSEPRSVKERRKNFLCKMglvefsskneitfddssqmMGLDRITECsgavsgssmnrADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKfenpfpeckgvnikkvkkLWKRIISmkkrnvetcmsekrkpnsekpkankmevkQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAScksftddggfgsnAKEGKikfgkkksshvpvvIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEkvdfhdrkktsgnkitgiqgrisknydnfrrfqtpyt
Low Complexity Region (SEG)
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAkegkikfgkkkSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTPYT
Disordered region (IsUnstruct)
*********DVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSE******RRKNFLCKMGLVEFSS***I*********************************************************ECVVTL*************FENPFPECKGVNIKKVKKLWKRIISMK********************************CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF*****************HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH************I*******************
Disordered Region (DISOPRED)
**********VFFDSTDCL*****************DYDIWMSEPR****RRKNFLCKMGLVE***************MGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFS*********************KKLWKRIISMKKRNVETCMSEKRKPNS**********KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG*G*****************VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTPYT
Disordered Region (DISEMBL)
********DDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVE**********************QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTPYT
Disordered Region (DISPRO)
************FD*TDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTPYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.436	0.217	0.388	2e-42
O60136	586	Uncharacterized WD repeat	no	no	0.529	0.419	0.307	3e-37
Q9XSC3	912	WD repeat-containing prot	yes	no	0.473	0.241	0.340	8e-36
Q498F0	912	WD repeat-containing prot	N/A	no	0.539	0.275	0.321	9e-36
Q5JSH3	913	WD repeat-containing prot	yes	no	0.475	0.242	0.337	2e-34
Q6NVE8	915	WD repeat-containing prot	yes	no	0.462	0.234	0.337	2e-34
Q9R037	908	WD repeat-containing prot	yes	no	0.462	0.236	0.337	2e-34
Q03177	834	WD repeat-containing prot	yes	no	0.554	0.309	0.286	1e-33
P32330	852	2-deoxy-glucose resistant	no	no	0.501	0.273	0.276	9e-19
Q5M786	334	WD repeat-containing prot	no	no	0.427	0.595	0.294	4e-18

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 31/234 (13%)

Query: 224 CIWTLKFSPDGRYLASGGEDGVVRIW------HVTSVAA-SCKSFTDDGGFGSNAKEGKI 276
            IW +KFS DGRYLA GG+D ++RIW      H  SVA+ +C S  ++      A     
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDPNNPKLNLKA----- 372

Query: 277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
                     PV          E+P++E  GH  D+LDL+WS +N+LLS SMDKT R+W 
Sbjct: 373 ----------PV--------FSEAPIREYAGHTADILDLSWSRNNFLLSSSMDKTARLWH 414

Query: 337 VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA 396
                CL  F+H ++VT + F+P DD +F+SGS+D K+R+W + EK V  W ++ ++I+A
Sbjct: 415 PVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWNELPELITA 474

Query: 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQGR 449
           + + PDG   I G+  G C FY   G   + +      R K + G+K+TGIQ R
Sbjct: 475 VAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGIQTR 528

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 131/270 (48%), Gaps = 24/270 (8%)

Query: 184 KRKPNSEKPKANKMEVKQ------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL 237
           KR P  E     K+ V Q        K    F       E    K  +W  + S  G+YL
Sbjct: 142 KRMPKKEITLNQKLYVSQVIGPADAPKSKTIFGKRIMQWEPSQFKESVWASEISKSGKYL 201

Query: 238 ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297
           A+ G+D ++R+W V       ++           KEG    G+          P  +F+ 
Sbjct: 202 ATAGKDAIIRVWKVIETPERRETL---------LKEGPQSCGR-------FFTPSSIFEP 245

Query: 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357
           E  P+ E  GH  +VL ++WS +++LL+ S D+TVR+W     + L VF H+  VTCV F
Sbjct: 246 E--PVLECVGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTKSLAVFRHNEIVTCVAF 303

Query: 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
           +PIDD YF+SGS+D K+++W +   +++ W ++  V+S IC+ PDG+  +VG   G C  
Sbjct: 304 HPIDDRYFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYPDGESIVVGMFYGLCAI 363

Query: 418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
           Y+          +  H   +    ++TG+Q
Sbjct: 364 YETKNLQYVSSWLIHHSPSRNKKCRVTGLQ 393

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 27/247 (10%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS----FTDDGGFGSNAKEGKI 276
           H G +WT+KFS  GR LAS G+D VVRIW + +      +    +  +G    +  +  +
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESL 568

Query: 277 KFGKKKSSHVPVVIPDEVFQIEESPLQE-----LHGHKGDVLDLAWSNSNYLLSCSMDKT 331
              K  +        DE    + +P ++       GH  D+LDL+WS + +LLS SMDKT
Sbjct: 569 NSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKT 628

Query: 332 VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV- 390
           VR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  W +V 
Sbjct: 629 VRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVD 688

Query: 391 --RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--------KKTSG 440
               +I+A  +  +GK  ++G+  G C FY         E + +H +        +   G
Sbjct: 689 GQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRGRNKVG 741

Query: 441 NKITGIQ 447
            KITGI+
Sbjct: 742 RKITGIE 748

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  151 bits (382), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 29/280 (10%)

Query: 196 KMEVKQNKKKCMEFTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 254
           K +     K   +F  +   Q++   H G +WT+KFS  GR LAS G+D VVRIW + + 
Sbjct: 486 KFKAAHGFKGPYDFEQIKVVQDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIWVLKNA 545

Query: 255 AASCKS----FTDDGGFGSNAKEGKIKFGKKKS-----SHVPVVIPDEV-FQIEESPLQE 304
                +    +  +G    +  +  +   K  +     S    V PD+      + P  +
Sbjct: 546 FDYFNNMRIKYNTEGRVSPSPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCK 605

Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
             GH  D+LDL+WS + +LLS SMDKTVR+W +   +CL  F H ++VT + F+P DD Y
Sbjct: 606 YKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRY 665

Query: 365 FISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKAS 421
           F+SGS+DGK+R+W + +K+V  W ++     +I+A  +  +GK  ++G+  G C FY   
Sbjct: 666 FLSGSLDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDT- 724

Query: 422 GNDLKLEKVDFHDR--------KKTSGNKITGIQGRISKN 453
                 E + +H +        +   G KITGI+    +N
Sbjct: 725 ------EHLKYHTQIHVRSTRGRNRVGRKITGIEPLPGEN 758

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 37/258 (14%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H G +WT+KFS  GR LAS G+D VVRIW + +       + ++     N  EG++    
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 564

Query: 281 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 565 SQESLSSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 624

Query: 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 625 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 684

Query: 387 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 435
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 685 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 737

Query: 436 KKTSGNKITGIQGRISKN 453
           +   G KITGI+    +N
Sbjct: 738 RNKVGRKITGIEPLPGEN 755

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 131/252 (51%), Gaps = 37/252 (14%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H G +WT+KFS  GR LAS G+D +VRIW + +       + ++     N  EG++    
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 566

Query: 281 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 567 SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 626

Query: 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 627 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 686

Query: 387 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 435
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 687 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 739

Query: 436 KKTSGNKITGIQ 447
           +   G KITGI+
Sbjct: 740 RNKVGRKITGIE 751

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 131/252 (51%), Gaps = 37/252 (14%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H G +WT+KFS  GR LAS G+D +VRIW + +       + ++     N  EG++    
Sbjct: 505 HMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 559

Query: 281 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 560 SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 619

Query: 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 620 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 679

Query: 387 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 435
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 680 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 732

Query: 436 KKTSGNKITGIQ 447
           +   G KITGI+
Sbjct: 733 RNKVGRKITGIE 744

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 67/325 (20%)

Query: 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG---------------CIWTLKFSPDGR 235
           +PK  KM   + +K   +F  L+ +QE+ A++G                IW+ KFS DG+
Sbjct: 129 EPKYIKM--LKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGK 186

Query: 236 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS----------- 284
           ++A+G +DG +RIW V                   A+   ++  ++ SS           
Sbjct: 187 FMATGSKDGKIRIWKVIGSPVERAELDSSAESNKEARAKSMRIKQQVSSLNNPKEKQFLD 246

Query: 285 ---------------HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 329
                          + PV  P        +PL+    H  DVLD+ WS +N++LS SMD
Sbjct: 247 SATEKYEEKEKLLNLYAPVFHP--------TPLRLYKEHVQDVLDINWSKNNFILSASMD 298

Query: 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389
           KTV++W       L  F H ++VTCV+F+P DD +FISG +D K R+W + +  V    D
Sbjct: 299 KTVKLWHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYD 358

Query: 390 VRDVISAICYIP-DGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFH------ 433
            +D+I+++   P +GK  I+G+  G  H     G          D + ++ + H      
Sbjct: 359 CQDLITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTET 418

Query: 434 DRKKTSGNKITGIQGRISKNYDNFR 458
           D K   G ++TG+Q   S+  ++FR
Sbjct: 419 DSKIRHGPRVTGLQAFRSQLDNSFR 443

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 53/286 (18%)

Query: 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--------------SVAAS---------- 257
           K  I    FS DG+Y+  G +DG + +W V               SV+AS          
Sbjct: 173 KNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRH 232

Query: 258 -CKSFTDDGGFGSNAKEGKIKF-GKKKSSHV--PVVIPDEVFQIEESPLQELHGHKGDVL 313
                + +G   SN  +   +F G  K  H+  PV   D VF++          H  D+L
Sbjct: 233 LASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSD-VFRV-------FMEHALDIL 284

Query: 314 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373
           D  WS + +L++ SMDKT ++W       L  F H ++VT   F P DD + I+G +D +
Sbjct: 285 DANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHR 344

Query: 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCH------------FYKA 420
            R+W + +  V    D +D+I+++   P G  + I+G+  G  +            F+ +
Sbjct: 345 CRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVS 404

Query: 421 SGNDLKLEKVDFHDR----KKTSGNKITGIQGRISKNYDNFRRFQT 462
             +     K  FH      K   G +ITG+Q   SK   N R   T
Sbjct: 405 DKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVT 450

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 109/251 (43%), Gaps = 52/251 (20%)

Query: 182 SEKRKPNSEKPKANKM-EVKQNKKKCMEFTALYTSQ-EIQAHKGCIWTLKFSPDGRYLAS 239
           +E++KP +E  K         N+ K       YT +  +  H   + ++KFSP+G +LAS
Sbjct: 3   TEEKKPETEASKTQSTPSSSNNQSKPAPVKPNYTLKFTLAGHTKAVSSVKFSPNGEWLAS 62

Query: 240 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299
              D +++IW                     A +GK +                      
Sbjct: 63  SSADKLIKIW--------------------GAYDGKFE---------------------- 80

Query: 300 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF 357
              + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H NYV C  F
Sbjct: 81  ---KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 137

Query: 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCH 416
           NP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  S  G C 
Sbjct: 138 NP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196

Query: 417 FY-KASGNDLK 426
            +  ASG  LK
Sbjct: 197 IWDTASGQCLK 207

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
225431541	674	PREDICTED: WD repeat-containing protein	0.961	0.663	0.654	1e-157
296088582	668	unnamed protein product [Vitis vinifera]	0.929	0.646	0.638	1e-149
255552366	654	WD-repeat protein, putative [Ricinus com	0.920	0.654	0.555	1e-131
224131190	655	predicted protein [Populus trichocarpa]	0.924	0.656	0.543	1e-129
224093348	550	predicted protein [Populus trichocarpa]	0.832	0.703	0.536	1e-125
356511161	675	PREDICTED: WD repeat-containing protein	0.952	0.656	0.516	1e-122
449461887	668	PREDICTED: uncharacterized protein LOC10	0.922	0.642	0.516	1e-120
356518745	665	PREDICTED: uncharacterized protein LOC10	0.937	0.655	0.516	1e-106
356507482	668	PREDICTED: uncharacterized protein LOC10	0.944	0.657	0.493	1e-104
357519825	651	WD repeat-containing protein [Medicago t	0.862	0.615	0.484	1e-102

>gi|225431541|ref|XP_002275497.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/457 (65%), Positives = 345/457 (75%), Gaps = 10/457 (2%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           ML SDEG DDVFFDS D LS EESV A+EELG GKLDY+IW +EPRSV+ERR++FL  MG
Sbjct: 1   MLRSDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMG 60

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSS---MNRADENLNCFDREMDSEANCM 117
            VEF  +++  F D  +M+ L RITECSGAVS SS   +N  +EN  C  RE D  ANCM
Sbjct: 61  FVEFVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCM 120

Query: 118 VDELEQDQMNECVVTLEGESNGFSQSVDKFE-----NPFPECKGVNI-KKVKKLWKRIIS 171
           VD L Q Q  +  +  EGE+ G   S  +FE          CK + + KK +  WKR IS
Sbjct: 121 VDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFIS 180

Query: 172 MKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 231
            +K       S+  K  SE PK N+M+V+QNKK+CMEFTAL   QEIQAHKG IWT+KFS
Sbjct: 181 KRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFS 240

Query: 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291
           PDG+YLASGGEDGVVRIW VTS  ASCK  T +G FG   K+GK  FG+KK S+ PVVIP
Sbjct: 241 PDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGCEVKDGKSSFGRKKPSYAPVVIP 300

Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
           D++FQIEESPLQE HGH  DVLDLAWS SN LLS SMDKTVR+WQVG ++CLNVF H+NY
Sbjct: 301 DKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNY 360

Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
           VTC+QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWADVRDVI+AICY PDGKGFIVGS+
Sbjct: 361 VTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSV 420

Query: 412 TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           TGTC FY ASGN L+L+ KV+FH RKKTSGNKITGIQ
Sbjct: 421 TGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQ 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088582|emb|CBI37573.3| unnamed protein product [Vitis vinifera]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 290/454 (63%), Positives = 335/454 (73%), Gaps = 22/454 (4%)

Query: 4   SDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVE 63
           SDEG DDVFFDS D LS EESV A+EELG GKLDY+IW +EPRSV+ERR++FL  MG VE
Sbjct: 10  SDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMGFVE 69

Query: 64  FSSKNEITFDDSSQMMGLDRITECSGAVSGSS---MNRADENLNCFDREMDSEANCMVDE 120
           F  +++  F D  +M+ L RITECSGAVS SS   +N  +EN  C  RE D  ANCMVD 
Sbjct: 70  FVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCMVDA 129

Query: 121 LEQDQMNECVVTLEGESNGFSQSVDKFE-----NPFPECKGVNI-KKVKKLWKRIISMKK 174
           L Q Q  +  +  EGE+ G   S  +FE          CK + + KK +  WKR IS +K
Sbjct: 130 LNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFISKRK 189

Query: 175 RNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG 234
                  S+  K  SE PK N+M+V+QNKK+CMEFTAL   QEIQAHKG IWT+KFSPDG
Sbjct: 190 GRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFSPDG 249

Query: 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294
           +YLASGGEDGVVRIW VTS  ASCK  T +G FG             + S+ PVVIPD++
Sbjct: 250 QYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGC------------EPSYAPVVIPDKI 297

Query: 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC 354
           FQIEESPLQE HGH  DVLDLAWS SN LLS SMDKTVR+WQVG ++CLNVF H+NYVTC
Sbjct: 298 FQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNYVTC 357

Query: 355 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 414
           +QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWADVRDVI+AICY PDGKGFIVGS+TGT
Sbjct: 358 IQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSVTGT 417

Query: 415 CHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           C FY ASGN L+L+ KV+FH RKKTSGNKITGIQ
Sbjct: 418 CCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQ 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552366|ref|XP_002517227.1| WD-repeat protein, putative [Ricinus communis] gi|223543598|gb|EEF45127.1| WD-repeat protein, putative [Ricinus communis]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/457 (55%), Positives = 335/457 (73%), Gaps = 29/457 (6%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           ML+ DEG DD+FFDS DCLS EES+V +E        Y+IW++EP+SVKERR++FLC+MG
Sbjct: 1   MLNFDEGEDDLFFDSVDCLSPEESIVNKE--------YEIWLNEPQSVKERRQSFLCEMG 52

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRA----DENLNCFDREMDSEANC 116
           L E + K++      ++++GL RI+E SGAVS SS  R     + NL+C  RE +SEANC
Sbjct: 53  LTELACKSD------NEIIGLQRISEFSGAVSSSSSLRTYGEEEGNLDCCGRESNSEANC 106

Query: 117 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPE---CKGVNIKKVKKLWKRIISMK 173
           M+D+++Q Q+++ +V  E E++    SV + ++   E         +K+K  WK  +  +
Sbjct: 107 MIDDMKQYQLDKPIVGCENENSESLTSVSECDHSDSEQYRSYDAGKQKMKSWWKFFVQKR 166

Query: 174 KRNVETCMSEKRKPNSEKP--KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 231
           K+   TC+S+  + NS+ P  + N+++VKQNKK+CMEFT +Y  QE++AHKG IWT+KFS
Sbjct: 167 KQKECTCVSKISELNSDTPTIETNRIKVKQNKKRCMEFTGVYMQQELRAHKGFIWTMKFS 226

Query: 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291
           PDG+YLA+GGEDG+VRIW VTSV    KSF  +  F  + KEGK    K+K SH  VVIP
Sbjct: 227 PDGQYLATGGEDGIVRIWQVTSVNGCQKSFASEDSF--DMKEGK---SKRKMSHASVVIP 281

Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
           + +FQ+EESP+ E +GH  DVLDLAWSNSN LLS S DKTVR+WQVG + CLN+F H +Y
Sbjct: 282 ERIFQLEESPVHEFYGHSSDVLDLAWSNSNCLLSSSKDKTVRLWQVGSDHCLNIFHHISY 341

Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
           VTC+QFNP+++NYFISGSIDGKVRIWGVCE+RVVDW D  DV SAICY PDGKGF+VGSI
Sbjct: 342 VTCIQFNPVNENYFISGSIDGKVRIWGVCEQRVVDWVDAHDVTSAICYQPDGKGFVVGSI 401

Query: 412 TGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQ 447
           TGTC FY+ASGNDL+L  ++    RK+T+GN+ITGIQ
Sbjct: 402 TGTCRFYEASGNDLQLGAEIHVQGRKRTAGNRITGIQ 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131190|ref|XP_002328477.1| predicted protein [Populus trichocarpa] gi|222838192|gb|EEE76557.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/458 (54%), Positives = 317/458 (69%), Gaps = 28/458 (6%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           MLSSDEG  D+F+DS D            +LG  +L+YDIW++EP+SV+ERR+ FL  MG
Sbjct: 1   MLSSDEGKRDLFYDSVDYF----------DLGCDQLEYDIWLTEPQSVEERRQGFLRGMG 50

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRAD-ENLNCFD----REMDSEAN 115
           L  F+ K         +  GL+RITECSGAVS SS+   + E +N       RE +SEAN
Sbjct: 51  LDGFAFKRH-------ENTGLERITECSGAVSSSSVPCTNVEEVNVVSCSAGREENSEAN 103

Query: 116 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPE-CKGVNIKK--VKKLWKRIISM 172
           C++D++ +D+M++  V  E E+ G    +   E    E CK  +  K  +K  WK  +  
Sbjct: 104 CVIDQMSKDKMDKSDVASENENIGPLLDLQGCEQCEEEKCKKCDSGKSIMKSWWKHFLKK 163

Query: 173 -KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 231
            K+  V  C+S   K ++E PK N+ +VKQNKK CMEFT +Y  QEIQAHKG IWT+KFS
Sbjct: 164 SKEERVGRCVSGVSKLDTEAPKTNRTKVKQNKKGCMEFTGVYMRQEIQAHKGFIWTMKFS 223

Query: 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK-FGKKKSSHVPVVI 290
           PDG+YLA+GGED ++R+W VT V +SCKSF  +G   SN KE K      KK  +  VVI
Sbjct: 224 PDGQYLATGGEDRIIRVWRVTLVDSSCKSFPSEGHCDSNLKEAKSNNLSTKKRMYSSVVI 283

Query: 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
           P++VFQIEE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W++GCN  LN+F H N
Sbjct: 284 PEKVFQIEETPLQEFHGHASEILDLAWSDSNHLLSSSMDKTVRLWRLGCNHSLNIFRHSN 343

Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410
           YVTC+QFNP+D NYFISGSIDGKVRIWGV EKRVV W DVRDVISAI Y PDG+GF+VG+
Sbjct: 344 YVTCIQFNPVDKNYFISGSIDGKVRIWGVSEKRVVHWTDVRDVISAISYQPDGRGFVVGT 403

Query: 411 ITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           I GTC FY+ SG DL+LE +V    R++TSGN+IT IQ
Sbjct: 404 IKGTCRFYEVSGTDLQLEAEVHIQGRRRTSGNRITSIQ 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093348|ref|XP_002309892.1| predicted protein [Populus trichocarpa] gi|222852795|gb|EEE90342.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/453 (53%), Positives = 302/453 (66%), Gaps = 66/453 (14%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           MLSSDEG  D+FFDS D L          ELG  KL+YDIW++EP+SVKERR+ FL  MG
Sbjct: 1   MLSSDEGESDLFFDSVDYL----------ELGCDKLEYDIWLNEPQSVKERRQGFLRGMG 50

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSM---NRADENLNCFD--REMDSEAN 115
           L  F+S  +       + +GL+RITECS AVS S +   N  + NL  +   RE +SEAN
Sbjct: 51  LGGFASNID-------ENLGLERITECSEAVSSSLVSCTNVEEVNLVSYSAGREENSEAN 103

Query: 116 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKR 175
           CMVDE+    M++     E E+ G S               V++++              
Sbjct: 104 CMVDEILPFSMDKPGAASENENIGPS---------------VHLRQ-------------- 134

Query: 176 NVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 235
                           PK N+ +VKQNKK  MEF+ +Y  QEIQAHKG IWT+KFSPDG+
Sbjct: 135 --------------GSPKTNRTKVKQNKKGFMEFSGVYMGQEIQAHKGFIWTMKFSPDGQ 180

Query: 236 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295
           YLA+GGED ++RIW VTSV +SCKSF+ +G   SN KEGK     KK  H  VVIP++VF
Sbjct: 181 YLATGGEDRIIRIWRVTSVDSSCKSFSSEGHSDSNLKEGKSSLRTKKRMHSSVVIPEKVF 240

Query: 296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV 355
           QIEE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W VGCN CL +F H +YVTC+
Sbjct: 241 QIEETPLQEFHGHTSEILDLAWSDSNHLLSSSMDKTVRLWLVGCNYCLGIFHHSSYVTCI 300

Query: 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 415
           QFNP+D+NYFISGSIDGKVR+WGV EKRVV WADVRDVISAICY PDG+GF+VG+I G+C
Sbjct: 301 QFNPVDENYFISGSIDGKVRVWGVSEKRVVHWADVRDVISAICYQPDGRGFVVGTIIGSC 360

Query: 416 HFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
            FY+ SG DL+LE ++    R + SGN+ITGIQ
Sbjct: 361 RFYEVSGTDLQLEAEIHIQGRNRNSGNRITGIQ 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511161|ref|XP_003524298.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/465 (51%), Positives = 316/465 (67%), Gaps = 22/465 (4%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYD-IWMSEPRSVKERRKNFLCKM 59
           MLSSD+G  DVFFDS D LS ++SV+A+EE G G+  YD IW+ EP SVKERR+ FL  +
Sbjct: 1   MLSSDDGDMDVFFDSVDSLSTQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGL 60

Query: 60  GLVEFSSK----NEITFDDSSQMMGLDRITECSGAVSGSSMNRAD----ENLNCFDREMD 111
           GL + SSK     ++  DDSS  +GL+RI ECSGA+S + +   D    E L     +  
Sbjct: 61  GLADSSSKVCSQEKMNLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAA 120

Query: 112 SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKF-------ENPFPECKGVNIKKVKK 164
           S+    +DE +    +E    ++G+ + FS + ++        +  F +   ++ +K K 
Sbjct: 121 SKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFD-MSKRKRKN 179

Query: 165 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 224
            WKR ++++K       S   K N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG 
Sbjct: 180 WWKRFVNIRKSGEGNVRS---KLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGL 236

Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284
           +WT+KFSP G+YLASGGEDGVVRIW VTS+  S   FT +     +  E      +KK S
Sbjct: 237 VWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHS 296

Query: 285 HVPVV-IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 343
             P + +P+ VFQIEESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCL
Sbjct: 297 SQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCL 356

Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 403
           NVF H++YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RD ISAI Y  DG
Sbjct: 357 NVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDG 416

Query: 404 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           KGF+VGS+TGTC FY ASG   +LE ++D H +KK SGNKITGIQ
Sbjct: 417 KGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQ 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461887|ref|XP_004148673.1| PREDICTED: uncharacterized protein LOC101207772 [Cucumis sativus] gi|449507515|ref|XP_004163054.1| PREDICTED: uncharacterized LOC101207772 [Cucumis sativus]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/465 (51%), Positives = 302/465 (64%), Gaps = 36/465 (7%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           MLSSD G  DVFFDS D L  EES+VAEE     KL Y+IWMSEP+S+K+RR+ FL ++G
Sbjct: 1   MLSSD-GDADVFFDSEDYLPLEESLVAEEA-DFSKLGYEIWMSEPQSIKKRRERFLQEVG 58

Query: 61  LVEFSSKNEITFDDSSQM------MGLDRITECSGAVSGSSMNRADENLNCFDREMDSEA 114
            V+F+S +    D   +       M L+R+TECSGAVS S                D   
Sbjct: 59  FVDFASSSTCAQDSEIESSCSSERMELERLTECSGAVSSS----------------DYTP 102

Query: 115 NCMVDELE----QDQMNECVVTLEGESNGFSQSVDKFENPFPE-----CKGVNIKKVKKL 165
           +C V+E +     ++M       E  S   S S   F  P  E     C+  ++ K K L
Sbjct: 103 SCNVEENDLVVCHNEMQSAEFDNEATSRLSSVSDSSFRRPQGEANVEACQDADVGKRKIL 162

Query: 166 --WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG 223
             WK   +   R      S + + NS K ++ +M+V Q+KK+C EF+ALY  Q+I AHKG
Sbjct: 163 TWWKSFKNKAARRRSADFSRESELNSPKSQSCRMKVYQHKKRCSEFSALYMRQQICAHKG 222

Query: 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 283
            IWT+KFSPDG+YLASGGEDGVVRIW VT   AS +   DDG + +  KEGK  F  K  
Sbjct: 223 LIWTMKFSPDGKYLASGGEDGVVRIWRVTYANASSEFLADDGNYNTKPKEGKSSFSSKPL 282

Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 343
               VVIP++VFQI+E P+QELHGH  D+LD+AWS SN LLS S DKTVR+WQV  +QCL
Sbjct: 283 RFATVVIPEKVFQIDELPIQELHGHSSDILDIAWSTSNCLLSSSKDKTVRLWQVSSDQCL 342

Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 403
           NVF H NYVTCVQFNP+D+N+F+SGSIDGK+RIWGV ++RVVDWAD+RDVI+A+ Y PDG
Sbjct: 343 NVFHHKNYVTCVQFNPMDENFFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAVSYRPDG 402

Query: 404 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           KGF VGSITGTC FY+ SG+ L L  +++   RKK SG +ITGIQ
Sbjct: 403 KGFAVGSITGTCRFYETSGDYLHLSAQINVQGRKKASGKRITGIQ 447

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518745|ref|XP_003528038.1| PREDICTED: uncharacterized protein LOC100801576 [Glycine max]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/463 (51%), Positives = 304/463 (65%), Gaps = 27/463 (5%)

Query: 1   MLSSDEGVDDVFFDSTDCLS-FEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKM 59
           ML SDEG  DVFFDS DC S   +SV+ E+E G     Y+IW++EP SV ERR+ FL +M
Sbjct: 1   MLISDEGDSDVFFDSVDCFSPTRDSVLTEQEFG-----YEIWVNEPVSVMERREKFLQEM 55

Query: 60  GLVEFSSK------NEITFDDSSQMMGLDRITECSGAVSGSSMN--RADEN----LNCFD 107
           GL + SSK      N ++ DDSS+ +GL+RI + SGAVS +S +    D++    L    
Sbjct: 56  GLGDGSSKVCSQENNVMSSDDSSERLGLERIRD-SGAVSNASCSCILPDDDQVSELVLSG 114

Query: 108 REMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPEC--KGVNIKKVKKL 165
            E  SEA  + DE +    +E     EG+    S +  +  +   E   K +  K+ K  
Sbjct: 115 SEATSEAQGLFDEHKGCPKDESC--FEGKVYEVSCTDQEVRHRKAEVREKYMGEKEKKNW 172

Query: 166 WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCI 225
           WK  IS KK       S   K NS   K  ++ V+QNKK+ ME +ALY  QEI+AHKG I
Sbjct: 173 WKHFISSKKGGGGKVRS---KLNSSTNKTRRINVRQNKKRWMELSALYIGQEIRAHKGLI 229

Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285
           WT+KFSP+G+YLASGGEDGV+RIW V ++  S   F  +    +  K       KK SS 
Sbjct: 230 WTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICFNAEDSAANKVKHDFSSSQKKHSSQ 289

Query: 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV 345
             VV+P ++F+IEESPL E  GH  DVLDLAWSNS+ LLS S DKTVR+W++GC+QCL+V
Sbjct: 290 SFVVLPSKIFKIEESPLHEFSGHASDVLDLAWSNSDTLLSSSSDKTVRLWKIGCSQCLSV 349

Query: 346 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
           F H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PDGKG
Sbjct: 350 FHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGKG 409

Query: 406 FIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           F+VGS+ GTC FY ASG   +LE K+  + +K TSGNKITGIQ
Sbjct: 410 FVVGSLPGTCRFYVASGKHFQLETKIHVNGKKSTSGNKITGIQ 452

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507482|ref|XP_003522494.1| PREDICTED: uncharacterized protein LOC100780979 [Glycine max]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/464 (49%), Positives = 299/464 (64%), Gaps = 25/464 (5%)

Query: 1   MLSSDEGVDDVFFDSTDCLS-FEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKM 59
           ML SDEG  D+FFDS DC S   ES++ ++E G     Y+IW++EP SV ERR+ FL  +
Sbjct: 1   MLISDEGDSDLFFDSVDCFSPTRESLLTKQEFG-----YEIWVNEPVSVMERREKFLQGL 55

Query: 60  GLVEFSSK-------NEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCF---DRE 109
           GL + SS        N ++ DDSS  +GL+RI +   A +  S    D+ ++       E
Sbjct: 56  GLGDGSSSKVCSQENNMMSSDDSSVRLGLERIRDSGAASNACSCILPDDQVSELVLSGSE 115

Query: 110 MDSEANCMVDELEQDQMNE-CVVTLEGESNGFSQSVDKFENPFPE-CKGVNI--KKVKKL 165
             SEA  + DE +    +E C      E +   Q V   +   PE C G ++  K+ K  
Sbjct: 116 ATSEAQALFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKVEVPEKCLGFDMGEKEKKNW 175

Query: 166 WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCI 225
           WK  IS KK       S   K NS   K  ++ V+QNKK+ MEF+ALY  QEI+AH+G I
Sbjct: 176 WKHFISSKKGGGGKFRS---KLNSTTNKTRRINVRQNKKRWMEFSALYIGQEIRAHEGLI 232

Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSS 284
           WT+KFSP+G+YLASGGEDGV+RIW V ++  S      +    S  K        K  S 
Sbjct: 233 WTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICLNAEDSAASKVKHDFSSSQKKHSSQ 292

Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN 344
              +V+P+++F+IEESPL E +GH  DVLDLAWS+S+ LLS S DKTVR+W++GC+QCL+
Sbjct: 293 SSFIVLPNKIFKIEESPLHEFYGHASDVLDLAWSSSDTLLSSSSDKTVRLWKIGCSQCLS 352

Query: 345 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404
           VF H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PD K
Sbjct: 353 VFYHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDAK 412

Query: 405 GFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           GF+VGS+TGTC FY ASG   +LE K+  + +K+TSGNKITGIQ
Sbjct: 413 GFVVGSLTGTCRFYVASGKYFQLETKIRVNGKKRTSGNKITGIQ 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519825|ref|XP_003630201.1| WD repeat-containing protein [Medicago truncatula] gi|357519897|ref|XP_003630237.1| WD repeat-containing protein [Medicago truncatula] gi|355524223|gb|AET04677.1| WD repeat-containing protein [Medicago truncatula] gi|355524259|gb|AET04713.1| WD repeat-containing protein [Medicago truncatula]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/452 (48%), Positives = 288/452 (63%), Gaps = 51/452 (11%)

Query: 11  VFFDSTDCLSFEESVVAEEELGP---GKLDYD-IWMSEPRSVKERRKNFLCKMGLVEFSS 66
           +F+DS D L+ E+SV+ EE  G    G   YD IW++EP SVKERR+ FL  M L   SS
Sbjct: 15  LFYDSLDSLTGEDSVLDEEGFGSERRGCFVYDEIWVNEPISVKERRERFLQGMDLAYSSS 74

Query: 67  K-----NEITFDDSSQMMGLDRITECSGAVSGSSMN---RADENLNCFDREMDSEANCMV 118
           K         FDD S  +G +RI   SGAVS +S++   +    L        SEA  ++
Sbjct: 75  KVCSQEKTTCFDDWSVTLGSERIVASSGAVSNASISPSGKVSGKLVLSGWNAASEAEVLL 134

Query: 119 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLW-KRIISMKKRNV 177
           ++L++ +  E    ++G      Q   + +  F +    N K  +K W KR ++++K + 
Sbjct: 135 EDLKRRREYE----VDGSFQEHRQREGEAKEEFWDFD--NGKANRKNWLKRFVNIRKGDK 188

Query: 178 ETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL 237
               S   K N+   K  +++VKQNKK+ MEF+ +Y  QEI+AHKG IWT+KFSP+G+YL
Sbjct: 189 GNFRS---KLNAATNKTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYL 245

Query: 238 ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV-IPDEVFQ 296
           ASGGEDGVVRIW V S                           +  SH P V +P+++FQ
Sbjct: 246 ASGGEDGVVRIWRVFS---------------------------RNKSHPPFVSLPNDIFQ 278

Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQ 356
           IEESPLQEL GH  D+LDLAWSNS+ LLS SMDKTVR W++ C+QCL+VF H  +VTC+Q
Sbjct: 279 IEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCIQ 338

Query: 357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 416
           FNP+++NYFISGSIDGKVRIWG+ E+RV+DWAD+RDVISAI Y  DGKGF+VGS+TGTC 
Sbjct: 339 FNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTCR 398

Query: 417 FYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
           FY ASG   +LE ++D   +KK SGNKITGIQ
Sbjct: 399 FYVASGKYFQLEGQIDIPGKKKASGNKITGIQ 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.522	0.409	0.522	1.7e-82
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.344	0.244	0.590	1.8e-76
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.344	0.229	0.527	2.7e-76
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.344	0.247	0.552	3.2e-73
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.341	0.224	0.546	2.8e-69
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.344	0.193	0.524	2.7e-67
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.333	0.171	0.493	7.1e-66
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.541	0.285	0.438	7.4e-66
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.623	0.321	0.376	5.5e-61
POMBASE|SPAC3H5.08c	933	SPAC3H5.08c "WD repeat protein	0.492	0.245	0.360	4.1e-38

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 138/264 (52%), Positives = 175/264 (66%)

Query:   186 KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGV 245
             K  S +   +K++VK NKK  +E +A Y  Q+I  HKG IWTLKFSPDG+YLA+GGEDGV
Sbjct:   162 KYKSSEETMSKVKVKTNKKSHVELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGV 221

Query:   246 VRIWHVTSVAASCKSFT-DDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQE 304
             V+IW +T   +   SF          A                V+ P + F IEE+P QE
Sbjct:   222 VKIWRITLSDSLLASFLRQQEPINQQAAL--------------VLFPQKAFHIEETPFQE 267

Query:   305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
             L+GH GDVLDLAWS+SN LLS S DKTVR+W+ GC+QCL+VF H+NYVTCV+FNP++ N 
Sbjct:   268 LYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNN 327

Query:   365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
             F SGSIDGK RIWG+ E+RVV W DVRD ISAI Y P+G GF+VG ITG C FY+   ND
Sbjct:   328 FASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFVVGCITGNCRFYQILDND 387

Query:   425 LKL-EKVDFHDRKKTSGNKITGIQ 447
             + + E++    R     N+IT ++
Sbjct:   388 VIMDEQILIRGR-----NRITAVE 406

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 95/161 (59%), Positives = 126/161 (78%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             VV P +VF+I E PL E  GH G+VLD++WS  NYLLS SMDKTVR+W+VG N CL VF 
Sbjct:   307 VVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFA 366

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H++YVT VQFNP+++NYF+SGSIDGKVRIW +    VVDWAD++D+ISA+CY PDG+G I
Sbjct:   367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGI 426

Query:   408 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
             +GS+ G+C F+  SG  L+L+ ++  H++KK+S  +ITG Q
Sbjct:   427 IGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQ 467

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
 Identities = 85/161 (52%), Positives = 122/161 (75%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             V+IP ++F++ + PL E  GH GD+LD++WS +N LLS S+D +VR+WQ+GC  CL +F 
Sbjct:   335 VIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS 394

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H+NYVT VQFNP+DD++FISGSIDGKVRIW   + +VVDWAD R +++A+CY PDG+  I
Sbjct:   395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVI 454

Query:   408 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447
             +G++T  C FY  SG+ L+L+  +  H++KK+S  +I G Q
Sbjct:   455 IGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQ 495

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
 Identities = 89/161 (55%), Positives = 123/161 (76%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             VV+P  +F I E PL E  GH G++LDL+WS   YLLS S+D+TVR+W+VGC++CL  F 
Sbjct:   301 VVLPPTIFSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFT 360

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H+N+VTCV FNP+DDNYFISGSIDGKVRIW V   RVVD+ D+RD+++A+CY PD KG +
Sbjct:   361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYRPDAKGAV 420

Query:   408 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQ 447
             +GS+TG C FY    N L++++ ++ H +KK +  +I+G+Q
Sbjct:   421 IGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKRISGLQ 461

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 2.8e-69, Sum P(3) = 2.8e-69
 Identities = 88/161 (54%), Positives = 121/161 (75%)

Query:   289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFD 347
             V+P +VF I E+P  E  GH G++LDL+WS   +LLS S+D+TVR+W+VG + +C+ VF 
Sbjct:   343 VLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFS 402

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H ++VTCV FNP+DDNYFISGSIDGKVRIW V + RVVD+ D+R +++A+CY PDGKG +
Sbjct:   403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAV 462

Query:   408 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQ 447
             VGS+TG C FY  + N L+L++ +  H +KK    +ITG Q
Sbjct:   463 VGSMTGECRFYHTTDNQLQLDRDISLHGKKKVPNKRITGFQ 503

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 2.7e-67, Sum P(3) = 2.7e-67
 Identities = 85/162 (52%), Positives = 113/162 (69%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             V++P+ VF + E P+    GH  DVLDL+WS S +LLS SMDKTVR+W +    CL VF 
Sbjct:   447 VLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS 506

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H +YVTC+QFNP+DDNYFISGS+D KVRIW + + +VVDW D+ ++++A CY PDG+G +
Sbjct:   507 HSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGAL 566

Query:   408 VGSITGTCHFYKASGNDLKLEK-VDFHDRKK-TSGNKITGIQ 447
             VGS  GTC  Y    N L+  + ++  +RKK T   KITG Q
Sbjct:   567 VGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQ 608

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 7.1e-66, Sum P(3) = 7.1e-66
 Identities = 79/160 (49%), Positives = 110/160 (68%)

Query:   291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
             P+ VF + + P+    GH  DVLDL+WS S  LLS SMDKTVR+W +    CL +F H++
Sbjct:   501 PETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHND 560

Query:   351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410
             YVTCVQFNP+D++YFISGS+D K+RIW +  ++VV+W D++++++A+CY PDG+   VGS
Sbjct:   561 YVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGS 620

Query:   411 ITGTCHFYKASGNDLKLEK---VDFHDRKKTSGNKITGIQ 447
             I G C  Y A   D KLE+   +D  ++KK    KIT  Q
Sbjct:   621 INGHCRLYSAE--DCKLEQTNQIDLQNKKKAQAKKITAFQ 658

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 7.4e-66, Sum P(2) = 7.4e-66
 Identities = 117/267 (43%), Positives = 161/267 (60%)

Query:   196 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 255
             ++ V+Q  K   E TALY +QEIQAH G IW++KFS DG+YLAS GED ++ IW V    
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   256 ASCKSFTD---------DGGFGSNAXXXXXXXXXXXS----SHVPVVIPDEVFQIEESPL 302
                +   D         +G                 S    S   + +PD +F + E P 
Sbjct:   447 KKGELLLDRPELLLLATNGSPEPTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLSEKPF 506

Query:   303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 362
                 GH  DVLDLAWS S +LLS SMDKTVR+W +    CL VF H +YVTC+QFNP+DD
Sbjct:   507 CSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDD 566

Query:   363 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422
              YFISGS+D KVR+W + +++VVDW D+ +++++ CY PDG+G +VGS  G+C  Y AS 
Sbjct:   567 RYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASD 626

Query:   423 NDLKLE-KVDFHDRKKTSGNK-ITGIQ 447
             N L+ + +++  ++KK +  K ITG Q
Sbjct:   627 NKLQQKSQINLQNKKKKAHQKKITGFQ 653

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 5.5e-61, Sum P(2) = 5.5e-61
 Identities = 116/308 (37%), Positives = 172/308 (55%)

Query:   158 NIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK-MEVKQNKKKCMEFTALYTSQ 216
             NIK V       ++ K  +  +  S K+  + +  KAN+ ++V+   K   E +AL+  Q
Sbjct:   339 NIKGVAHSMSLRVADKDVSDGSTDSPKKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQ 398

Query:   217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----------SVAASCKSFTDDGG 266
             EIQAH+G +WT+KFS D  YLASGG D V+ +W V           S+     S  D  G
Sbjct:   399 EIQAHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSG 458

Query:   267 FGSNAXXXXXXXXXXXS---SHVP--VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 321
                                 +H+P  V +P+ VF   + P+  L GH   +LDL+WS S 
Sbjct:   459 NEITVVEKKKKGKGSSGRRHNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQ 518

Query:   322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
              LLS SMDKTVR+W +    CL +F H++YVTC+QF+P+D+NYF+SGS+D K+RIW + +
Sbjct:   519 LLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQD 578

Query:   382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKTSG 440
             + VV+W+D+ ++++A CY PDG+G ++GS  G C  Y      L +  ++D    KK+  
Sbjct:   579 RHVVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQA 638

Query:   441 N-KITGIQ 447
               KIT  Q
Sbjct:   639 KRKITSFQ 646

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

POMBASE|SPAC3H5.08c SPAC3H5.08c "WD repeat protein, human WDR44 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 418 (152.2 bits), Expect = 4.1e-38, P = 4.1e-38
 Identities = 89/247 (36%), Positives = 135/247 (54%)

Query:   211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 270
             A+ ++    +    IW +KFS DGRYLA GG+D ++RIW V                  +
Sbjct:   305 AITSNSSSNSSNNAIWAMKFSRDGRYLAVGGQDRILRIWAVLD--------------SEH 350

Query:   271 AXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 330
             A            ++  + +   VF   E+P++E  GH  D+LDL+WS +N+LLS SMDK
Sbjct:   351 ARSVASETCSSDPNNPKLNLKAPVFS--EAPIREYAGHTADILDLSWSRNNFLLSSSMDK 408

Query:   331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV 390
             T R+W      CL  F+H ++VT + F+P DD +F+SGS+D K+R+W + EK V  W ++
Sbjct:   409 TARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWNEL 468

Query:   391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQGR 449
              ++I+A+ + PDG   I G+  G C FY   G   + +      R K   G+K+TGIQ R
Sbjct:   469 PELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGIQTR 528

Query:   450 ISKNYDN 456
              ++  DN
Sbjct:   529 -TQMIDN 534

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0044732 "mitotic spindle pole body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034856001 SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (659 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	465
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
smart00320	40	smart00320, WD40, WD40 repeats	8e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	9e-08
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (266), Expect = 8e-26
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 49/203 (24%)

Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 278
           + H G +  +  S DG YLASG  D  +R+W                          ++ 
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLW-------------------------DLET 82

Query: 279 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV 337
           G+                     ++ L GH   V  +A+S     L S S DKT+++W V
Sbjct: 83  GEC--------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 338 GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRVVDWADVRDVIS 395
              +CL     H  +V  V F+P D  +  S S DG +++W     K V         ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 396 AICYIPDGKGFIVGSITGTCHFY 418
           ++ + PDG+  +  S  GT   +
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (251), Expect = 7e-24
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 50/199 (25%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 274
            + ++ H G +  + FSPDG+ LA+G  DG +++W + +                     
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET--------------------- 40

Query: 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVR 333
                                      L+ L GH G V D+A S +  YL S S DKT+R
Sbjct: 41  ------------------------GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76

Query: 334 MWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGV-CEKRVVDWADVR 391
           +W +   +C+     H +YV+ V F+P D     S S D  +++W V   K +       
Sbjct: 77  LWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Query: 392 DVISAICYIPDGKGFIVGS 410
           D ++++ + PDG  F+  S
Sbjct: 136 DWVNSVAFSPDGT-FVASS 153

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 49/206 (23%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           + +  H   + ++ FSPDGR L+S   D  +++W V +                      
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------------------- 124

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                                     L  L GH   V  +A+S +  ++ S S D T+++
Sbjct: 125 -----------------------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 335 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RD 392
           W +   +C+     H   V  V F+P D    +S S DG +++W +   + +       +
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220

Query: 393 VISAICYIPDGKGFIVGSITGTCHFY 418
            ++++ + PDG     GS  GT   +
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 48/164 (29%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +  H G + ++ FSPDG  L S   DG +++W                    +   GK
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--------------------DLSTGK 210

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRM 334
                                     L  L GH+  V  +A+S   YLL S S D T+R+
Sbjct: 211 -------------------------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Query: 335 WQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           W +   +C+     H N VT + ++P D     SGS DG +RIW
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 1e-17
 Identities = 57/266 (21%), Positives = 96/266 (36%), Gaps = 13/266 (4%)

Query: 184 KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGED 243
                S     + + +       +      +S  ++ H+  I ++ FSPDG  L SG  D
Sbjct: 27  SLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86

Query: 244 GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK---KSSHVPVVIPDEVFQIEES 300
           G +++W + +     KS         +        G      SS +   +          
Sbjct: 87  GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146

Query: 301 PLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQF 357
            ++ L GH   V  LA+S    LL    S+D T+++W +   + L+    H   V+ + F
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 358 NPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 413
           +P       SGS DG +R+W    G   +  +       V     + PDG     GS  G
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV---SSFSPDGSLLASGSSDG 263

Query: 414 TCHFYKASGNDLKLEKVDFHDRKKTS 439
           T   +    +   L  +  H     S
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLS 289

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.0 bits (193), Expect = 9e-16
 Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 9/246 (3%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273
            + ++ H   + +L FSPDG+ LASG   DG +++W + +      +        S+   
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAF 206

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
                    S      I        +     L GH   V+     + + L S S D T+R
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 334 MWQV-GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 391
           +W +   +  L     H+  V  V F+P D     SGS DG VR+W +   +++    ++
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 392 ---DVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
                +S++ + PDG   + G S  GT   +               +    S +    + 
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVV 385

Query: 448 GRISKN 453
              S +
Sbjct: 386 SSGSTD 391

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 47/216 (21%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 274
            + +  H   + ++ FSPDG+ LASG  DG VR+W + +                     
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG-------------------- 316

Query: 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLSCSMDKTV 332
                                  +      L GH+G V  L++S   S  +   S D T+
Sbjct: 317 -----------------------KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 333 RMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV-CEKRVVDWADVR 391
           R+W +   + L   + H+ V  V F+P D     SGS DG VR+W +     + +     
Sbjct: 354 RLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427
             ++++ + PDGK    GS   T   +    +   +
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 46/124 (37%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273
               ++ H+  + ++ FSPDG  LASG EDG +R+W + +                    
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-------------------- 250

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTV 332
                                       +Q L GH   V  LAWS     L S S D T+
Sbjct: 251 -------------------------GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 333 RMWQ 336
           R+W 
Sbjct: 286 RIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
             + L GH G V  +A+S +   L + S D T+++W +   + L     H   V  V  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 359 PIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G 413
             D  Y  SGS D  +R+W    G C   V         +S++ + PDG+  +  S    
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGEC---VRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115

Query: 414 TCHFY 418
           T   +
Sbjct: 116 TIKVW 120

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250
           + ++ H G + ++ FSPDG+YLASG +DG +++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250
           + ++ H G + ++ FSPDG  LASG +DG VR+W 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 299 ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
              L+ L GH G V  +A+S + N L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 300 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
             L+ L GH G V  +A+S +  YL S S D T+++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 341 QCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           + L     H   VT V F+P D  Y  SGS DG +++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 341 QCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW 377
           + L     H   VT V F+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 18/103 (17%)

Query: 296 QIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN----------QCL 343
           Q+ + P+ +L GH   +LDL ++   S  L S S D T+R+W++  N          QC+
Sbjct: 61  QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120

Query: 344 NVFDHHNYVTCVQFNPIDDNYFI--SGSIDGKVRIWGV-CEKR 383
            +  H   ++ + +NP+  NY+I  S   D  V IW +  EKR
Sbjct: 121 -LKGHKKKISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKR 160

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 218 IQAHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 276
           ++ H+G + +L FSPDG  L SGG +DG +R+W +                 SN      
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-----RTGKPLKTLEGHSNVLSVSF 378

Query: 277 KFGKKKSSHVP----VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT 331
               +  S       V + D       S L+ L GH   V  L +S     L S S D T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLS---TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 332 VRMWQVGCNQCLNVFDHHNYVTCVQFNPI 360
           +R+W +  +     F     V   + + +
Sbjct: 436 IRLWDLKTSLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 37/182 (20%)

Query: 217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHV----------TSVAASCKSFTDDG 265
           E++ H+  +W++ +S  D   LASG +DG V++W +          T     C  F  + 
Sbjct: 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629

Query: 266 G----FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 321
           G    FGS   + K+ +   ++  +P              L  + GH   V  + + +S+
Sbjct: 630 GRSLAFGS--ADHKVYYYDLRNPKLP--------------LCTMIGHSKTVSYVRFVDSS 673

Query: 322 YLLSCSMDKTVRMWQV-----GCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375
            L+S S D T+++W +     G N+  L+ F  H  V       + D Y  +GS   +V 
Sbjct: 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733

Query: 376 IW 377
           ++
Sbjct: 734 VY 735

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0286	343	consensus G-protein beta subunit [General function	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.92
PTZ00421	493	coronin; Provisional	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.92
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.91
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.91
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.91
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.9
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0296	399	consensus Angio-associated migratory cell protein	99.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0643	327	consensus Translation initiation factor 3, subunit	99.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.87
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.87
PTZ00421	493	coronin; Provisional	99.87
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.87
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.86
KOG0645	312	consensus WD40 repeat protein [General function pr	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.86
KOG0643	327	consensus Translation initiation factor 3, subunit	99.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.86
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.86
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.86
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.85
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.85
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
KOG0296	399	consensus Angio-associated migratory cell protein	99.84
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.84
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.84
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.84
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.83
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
PTZ00420	568	coronin; Provisional	99.83
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.82
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.82
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.82
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.81
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.81
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.81
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.8
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.8
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.8
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.8
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.79
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.79
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.79
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.78
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.78
KOG0289	506	consensus mRNA splicing factor [General function p	99.78
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.78
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.77
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.77
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.76
KOG0641	350	consensus WD40 repeat protein [General function pr	99.76
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.76
KOG0267	825	consensus Microtubule severing protein katanin p80	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.75
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.75
KOG0639	705	consensus Transducin-like enhancer of split protei	99.75
KOG1273	405	consensus WD40 repeat protein [General function pr	99.74
KOG0646	476	consensus WD40 repeat protein [General function pr	99.74
KOG1274	933	consensus WD40 repeat protein [General function pr	99.73
KOG4328	498	consensus WD40 protein [Function unknown]	99.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.71
KOG1274	933	consensus WD40 repeat protein [General function pr	99.7
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.7
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.69
KOG2055	514	consensus WD40 repeat protein [General function pr	99.69
KOG1539	910	consensus WD repeat protein [General function pred	99.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG2048	691	consensus WD40 repeat protein [General function pr	99.65
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.64
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.64
KOG4328	498	consensus WD40 protein [Function unknown]	99.63
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.63
KOG1539	910	consensus WD repeat protein [General function pred	99.63
KOG0639	705	consensus Transducin-like enhancer of split protei	99.63
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.63
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.62
KOG2055	514	consensus WD40 repeat protein [General function pr	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.6
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.6
KOG1188	376	consensus WD40 repeat protein [General function pr	99.6
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.6
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.59
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.59
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.59
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.55
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.55
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.55
KOG2096	420	consensus WD40 repeat protein [General function pr	99.54
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.54
KOG2048	691	consensus WD40 repeat protein [General function pr	99.53
KOG1273	405	consensus WD40 repeat protein [General function pr	99.53
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.52
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.51
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.51
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.51
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.5
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.5
COG2319	466	FOG: WD40 repeat [General function prediction only	99.49
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.48
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.48
COG2319	466	FOG: WD40 repeat [General function prediction only	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
KOG1188	376	consensus WD40 repeat protein [General function pr	99.47
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.46
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.44
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.44
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.43
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.36
PRK01742	429	tolB translocation protein TolB; Provisional	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.36
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.35
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.34
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.32
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.32
PRK04922	433	tolB translocation protein TolB; Provisional	99.31
KOG1963	792	consensus WD40 repeat protein [General function pr	99.31
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.29
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.28
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.28
PRK03629	429	tolB translocation protein TolB; Provisional	99.28
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.27
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.26
KOG4227	609	consensus WD40 repeat protein [General function pr	99.26
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.25
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.25
PRK11028	330	6-phosphogluconolactonase; Provisional	99.25
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.25
PRK02889	427	tolB translocation protein TolB; Provisional	99.23
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.23
KOG1963	792	consensus WD40 repeat protein [General function pr	99.23
KOG2139	445	consensus WD40 repeat protein [General function pr	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.22
KOG1310	758	consensus WD40 repeat protein [General function pr	99.22
PRK11028	330	6-phosphogluconolactonase; Provisional	99.18
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.17
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.17
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.16
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.16
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.15
KOG2139	445	consensus WD40 repeat protein [General function pr	99.13
KOG2321	703	consensus WD40 repeat protein [General function pr	99.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.07
PRK03629	429	tolB translocation protein TolB; Provisional	99.07
PRK01742	429	tolB translocation protein TolB; Provisional	99.06
KOG4547	541	consensus WD40 repeat-containing protein [General	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.03
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.0
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.97
PRK04922	433	tolB translocation protein TolB; Provisional	98.97
PRK05137	435	tolB translocation protein TolB; Provisional	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
PRK02889	427	tolB translocation protein TolB; Provisional	98.91
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.8
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.78
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.77
KOG2315	566	consensus Predicted translation initiation factor	98.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.77
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.75
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.75
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
PRK01029	428	tolB translocation protein TolB; Provisional	98.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.64
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.61
PRK00178	430	tolB translocation protein TolB; Provisional	98.6
PRK04792	448	tolB translocation protein TolB; Provisional	98.58
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.51
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.49
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.49
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.47
PRK04043	419	tolB translocation protein TolB; Provisional	98.45
KOG1334	559	consensus WD40 repeat protein [General function pr	98.43
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.39
KOG4547	541	consensus WD40 repeat-containing protein [General	98.37
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.36
KOG2695	425	consensus WD40 repeat protein [General function pr	98.36
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.36
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.35
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.35
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.31
COG4946	668	Uncharacterized protein related to the periplasmic	98.24
COG4946	668	Uncharacterized protein related to the periplasmic	98.24
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.19
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.18
KOG2315	566	consensus Predicted translation initiation factor	98.16
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.16
KOG2695	425	consensus WD40 repeat protein [General function pr	98.15
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.15
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.15
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.11
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.11
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.04
PRK04043	419	tolB translocation protein TolB; Provisional	97.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.94
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.94
KOG2314	698	consensus Translation initiation factor 3, subunit	97.92
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.88
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.84
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.73
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.55
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.54
KOG2314	698	consensus Translation initiation factor 3, subunit	97.53
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.47
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.35
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.34
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.21
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.15
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.11
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.09
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.02
KOG3621	726	consensus WD40 repeat-containing protein [General	96.9
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.72
PRK02888	635	nitrous-oxide reductase; Validated	96.71
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.61
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.56
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.37
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.3
PRK02888	635	nitrous-oxide reductase; Validated	96.26
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.12
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.1
COG3391	381	Uncharacterized conserved protein [Function unknow	96.09
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.06
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.01
KOG3621	726	consensus WD40 repeat-containing protein [General	95.9
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.83
KOG2395	644	consensus Protein involved in vacuole import and d	95.68
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.64
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.41
COG3391	381	Uncharacterized conserved protein [Function unknow	95.25
KOG2395	644	consensus Protein involved in vacuole import and d	95.12
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.08
KOG2444	238	consensus WD40 repeat protein [General function pr	95.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.05
PRK13616	591	lipoprotein LpqB; Provisional	94.95
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.88
KOG2444	238	consensus WD40 repeat protein [General function pr	94.67
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.48
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.4
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.4
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.21
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.89
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.39
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.34
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.3
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.02
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.82
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.78
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.6
PRK13616	591	lipoprotein LpqB; Provisional	92.54
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.5
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.23
PHA02713	557	hypothetical protein; Provisional	91.1
PRK13684	334	Ycf48-like protein; Provisional	90.61
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.56
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.12
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.97
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.39
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.27
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.06
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.56
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	88.38
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.76
COG5167	776	VID27 Protein involved in vacuole import and degra	87.61
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.51
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.04
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	86.31
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	86.06
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	85.44
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	84.51
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.13
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.88
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	82.88
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	82.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.34
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.28
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	81.85
PHA03098	534	kelch-like protein; Provisional	81.71
KOG2247	615	consensus WD40 repeat-containing protein [General	81.69
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.07
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	80.65
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.48
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	80.2

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-59  Score=469.40  Aligned_cols=438  Identities=38%  Similarity=0.665  Sum_probs=319.5

Q ss_pred             CCccceeeecccccccccCccccccCCCCCcccceeccCCCCHHHHHHHHHHhcCCCCCcCCCc-ccccCC-------cc
Q 012367            6 EGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNE-ITFDDS-------SQ   77 (465)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~   77 (465)
                      +||||+||||.|+++               ..|+||+.+|+||.|||++||++|||+....... .+....       +.
T Consensus         6 ~ee~~~f~~~~~~~~---------------~~~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~~~~   70 (712)
T KOG0283|consen    6 EEEEDRFFDASERVS---------------PDYDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVESNV   70 (712)
T ss_pred             ccccccccccccccC---------------cchhhhhcCccchhHHHHHHhhhhcccccccccccccccccccccccccc
Confidence            355599999999996               1199999999999999999999999996654221 111110       00


Q ss_pred             ccCCcc-ccc-----ccCCccCCCCCCCCCCccccccccCCccceeccc---------cccccCcceeeeecccc-cCCC
Q 012367           78 MMGLDR-ITE-----CSGAVSGSSMNRADENLNCFDREMDSEANCMVDE---------LEQDQMNECVVTLEGES-NGFS  141 (465)
Q Consensus        78 ~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~---------l~~~~~~~~~~~~~~~~-~~~s  141 (465)
                      +....+ +.+     +..+. .++.........+ + .++.+.++++.+         +.+.+.....+.++++. ++.+
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~-~~s~~~~~~~~~~-~-~~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~  147 (712)
T KOG0283|consen   71 DESNHNSVEDTDSEQCRPSS-SSSKSRVSQSSSS-I-ELDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGES  147 (712)
T ss_pred             cccccccccccccccCCccc-ccccccccccccc-e-eecccceeeEeeccCccccccccCCCcccccccccccCCcCcc
Confidence            000000 000     00000 0000000000011 1 158888888876         56888999999999998 6888


Q ss_pred             hhhhcccCC--CC----------ccCCC-----chhhHHHHHHHHHHhhhcccccc---------c-ccc---------C
Q 012367          142 QSVDKFENP--FP----------ECKGV-----NIKKVKKLWKRIISMKKRNVETC---------M-SEK---------R  185 (465)
Q Consensus       142 ~~~~~l~~~--~~----------~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~---------~-~~~---------~  185 (465)
                      +.+.+|++.  ++          ...+.     .++..+.|.+++...... ....         . ...         .
T Consensus       148 ~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~-~s~~~~~~~~~~~~d~~~~~~~~~~~~~  226 (712)
T KOG0283|consen  148 SRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHS-LSSLSENRRSRFDSDSSSQFHNYLSEPK  226 (712)
T ss_pred             cchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccc-cccccccccccccccchhcccccccccc
Confidence            889988771  11          11112     223334466665443221 1110         0 000         0


Q ss_pred             ---CCCCCCCcchhhHHhhccccccccccccchhhhc-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367          186 ---KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF  261 (465)
Q Consensus       186 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~  261 (465)
                         ........+.++++++.+|..+++..++..|.++ +|+++||+|+||+||+||||||+||.|+||.+.+........
T Consensus       227 ~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~  306 (712)
T KOG0283|consen  227 SSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAE  306 (712)
T ss_pred             cccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccc
Confidence               0000112338899999999999999999999999 999999999999999999999999999999987733321111


Q ss_pred             cCCC-------------Ccccc--cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEE
Q 012367          262 TDDG-------------GFGSN--AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC  326 (465)
Q Consensus       262 ~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~  326 (465)
                      ....             +....  .................+..+..++.+..+|++.+.||.++|++|.|+.+++|+|+
T Consensus       307 ~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS  386 (712)
T KOG0283|consen  307 GDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS  386 (712)
T ss_pred             cccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEec
Confidence            1100             00000  11111222223333344778888999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE
Q 012367          327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  406 (465)
Q Consensus       327 s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l  406 (465)
                      |+|+|||||++....|+++|.|.++|+||+|+|.|++||++|+.|++||||++...+++.|.+....|+++||.|||++.
T Consensus       387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEeecCC--------ccceeeeec
Q 012367          407 IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRISKN--------YDNFRRFQT  462 (465)
Q Consensus       407 ~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs--------~d~~~~~~~  462 (465)
                      ++|+.+|.|++|++.+.+++.. ++..+++++...++|||+||.|...        +..+|+++.
T Consensus       467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            9999999999999999999988 9999998888888999999998755        344777765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=6.1e-30  Score=231.34  Aligned_cols=230  Identities=21%  Similarity=0.360  Sum_probs=178.7

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (465)
                      ..++|+||.+.|.+|.|++|.++|+|+|.||.+.|||.-+.........+..-+..+.      +.+.+...++....+ 
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA------~sPSg~~VAcGGLdN~  120 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA------YSPSGNFVACGGLDNK  120 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE------ECCCCCeEEecCcCce
Confidence            3478999999999999999999999999999999999877555444333322111111      111111111111111 


Q ss_pred             -ceeeec-------CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367          293 -EVFQIE-------ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       293 -~~~~~~-------~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~  363 (465)
                       .+|.+.       .+..+++.+|++.+.|+.|-+++.|+|+|.|.+..+||+++++.+..| +|.+.|.++.++|.+++
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence             122221       133567889999999999999999999999999999999999999999 69999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      .|++|+-|++.++||++.+..+. +.+|...|++|+|.|+|.-+++|+.|+++++||++..... ..+.    +-.....
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys----~~~~~~g  275 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYS----HDSIICG  275 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeec----cCcccCC
Confidence            99999999999999999987765 8899999999999999999999999999999999976432 1221    1123467


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      |+++.|+.+|.+
T Consensus       276 itSv~FS~SGRl  287 (343)
T KOG0286|consen  276 ITSVAFSKSGRL  287 (343)
T ss_pred             ceeEEEcccccE
Confidence            999999999754

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=1.1e-30  Score=263.66  Aligned_cols=202  Identities=29%  Similarity=0.514  Sum_probs=177.5

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      +........++.||.++|..++|+|+.++|+++|+|++||+|.+.+..                                
T Consensus       437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s--------------------------------  484 (707)
T KOG0263|consen  437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS--------------------------------  484 (707)
T ss_pred             cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce--------------------------------
Confidence            334445567789999999999999999999999999999999998743                                


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEE
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l  365 (465)
                                   .+-.+.||..+|+++.|+|-| +++|+|.|++.++|.....++++.| +|.+.|.|+.|+| +.+|+
T Consensus       485 -------------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~  550 (707)
T KOG0263|consen  485 -------------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYV  550 (707)
T ss_pred             -------------eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-ccccc
Confidence                         345667999999999999987 8999999999999999999999999 6999999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      ++||.|.+||+||+.+|..++ +.+|..+|++++|+|+|++|++|+.||.|.+||+.++.+...       .+.+.+.|.
T Consensus       551 aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~  623 (707)
T KOG0263|consen  551 ATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIY  623 (707)
T ss_pred             ccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCcee
Confidence            999999999999999998887 889999999999999999999999999999999999877432       222347899


Q ss_pred             eEEEeecCC------ccc-eeeeec
Q 012367          445 GIQGRISKN------YDN-FRRFQT  462 (465)
Q Consensus       445 ~~~f~p~gs------~d~-~~~~~~  462 (465)
                      ++.|+.+|.      -|+ +++|+.
T Consensus       624 SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  624 SLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             EEEEecCCCEEEecCCCCeEEEEEc
Confidence            999998743      344 788874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.8e-30  Score=245.07  Aligned_cols=261  Identities=17%  Similarity=0.301  Sum_probs=195.7

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCK  259 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~  259 (465)
                      +...+...+....+.+++|.       .+.....++|.||++.|.++.|+|.  +..||||+.||+|++|++.+......
T Consensus       184 S~ds~~laT~swsG~~kvW~-------~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~  256 (459)
T KOG0272|consen  184 SRDSKHLATGSWSGLVKVWS-------VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD  256 (459)
T ss_pred             ecCCCeEEEeecCCceeEee-------cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh
Confidence            34444444555666677663       3445667899999999999999997  56999999999999999987544333


Q ss_pred             eecCCCCcccccCCCeEEeccCCCCc--eeEecCCceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEE
Q 012367          260 SFTDDGGFGSNAKEGKIKFGKKKSSH--VPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMW  335 (465)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lW  335 (465)
                      ...+...+.      .+.+...+...  .+....-.+|++. ...+....||...|.+++|+++| +++||+.|..-+||
T Consensus       257 l~gH~~RVs------~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  257 LEGHLARVS------RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             hhcchhhhe------eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence            322221111      11121111111  1111112344443 34456678999999999999997 78899999999999


Q ss_pred             eCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEee-CCCEEEEEEcC
Q 012367          336 QVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIP-DGKGFIVGSIT  412 (465)
Q Consensus       336 D~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~sp-dg~~l~sgs~d  412 (465)
                      |++++.++..+ +|...|..|.|+| +|..+||||.|++++|||++....+ .+.+|.+-|+.|+|+| .|.+|++++.|
T Consensus       331 DlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  331 DLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             ecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            99999999999 6999999999999 9999999999999999999976655 4788999999999999 78999999999


Q ss_pred             CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC------CccceeeeecC
Q 012367          413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK------NYDNFRRFQTP  463 (465)
Q Consensus       413 G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g------s~d~~~~~~~p  463 (465)
                      +++++|...+... +..+..|.      .+|.++.++|++      +||++..++.|
T Consensus       410 ~t~kiWs~~~~~~-~ksLaGHe------~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  410 NTVKIWSTRTWSP-LKSLAGHE------GKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             cceeeecCCCccc-chhhcCCc------cceEEEEeccCCceEEEeccCceeeeccC
Confidence            9999999887644 33444444      678888888775      77877666654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.5e-30  Score=242.31  Aligned_cols=232  Identities=23%  Similarity=0.374  Sum_probs=185.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe--cCCceeee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV--IPDEVFQI  297 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  297 (465)
                      |-+.+|..+.||+++..|||||.+|.++||+..+....+.+..+...+.........    .....+...  ...++|..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~----~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD----SDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC----CccceeeeccCCceeeecc
Confidence            778999999999999999999999999999999987777766655443322211110    011111111  12245555


Q ss_pred             cC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          298 EE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       298 ~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                      +. .++..+.||...|..++|+|+| +|+|++.|.+-++||+.++..+... +|...|.+++|+| +|.+++||+.|..-
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLG  327 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchh
Confidence            54 7899999999999999999986 9999999999999999998766555 7999999999999 99999999999999


Q ss_pred             EEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee---
Q 012367          375 RIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI---  450 (465)
Q Consensus       375 ~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p---  450 (465)
                      ||||+++++.+- +.+|...|.+|+|+|+|..|++|+.|++|+|||++.... +..+..|.      +-|+.+.|.|   
T Consensus       328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~------nlVS~Vk~~p~~g  400 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHS------NLVSQVKYSPQEG  400 (459)
T ss_pred             heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceeccccc------chhhheEecccCC
Confidence            999999987664 888999999999999999999999999999999997665 55666666      5566666665   


Q ss_pred             ----cCCccc-eeeeecC
Q 012367          451 ----SKNYDN-FRRFQTP  463 (465)
Q Consensus       451 ----~gs~d~-~~~~~~p  463 (465)
                          +.+||+ +++|.++
T Consensus       401 ~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  401 YFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             eEEEEcccCcceeeecCC
Confidence                578887 4666544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=236.61  Aligned_cols=257  Identities=17%  Similarity=0.312  Sum_probs=191.2

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF  261 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~  261 (465)
                      ++..+...+...+..++.|.       +..-.+.++.++|...|.|++|+|||+.||||+.||.|++||..+++.....+
T Consensus       124 sp~g~~l~tGsGD~TvR~WD-------~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  124 SPTGSRLVTGSGDTTVRLWD-------LDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             cCCCceEEecCCCceEEeec-------cCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence            44444445556666666663       34445567889999999999999999999999999999999999887766555


Q ss_pred             cCCCCcccccCCCeEEeccCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCC
Q 012367          262 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG  338 (465)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~  338 (465)
                      ..............+.........+...-.+  .+|++. ...+..+.||+.+|+|+.|-.++++++||.|++|++|+..
T Consensus       197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEcc
Confidence            4443322111111111111111111111111  234432 4567888999999999999989999999999999999965


Q ss_pred             CCeEeEE-------------------------------------------------------------------------
Q 012367          339 CNQCLNV-------------------------------------------------------------------------  345 (465)
Q Consensus       339 ~~~~l~~-------------------------------------------------------------------------  345 (465)
                      .|.+.+.                                                                         
T Consensus       277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~  356 (480)
T KOG0271|consen  277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS  356 (480)
T ss_pred             chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence            5432211                                                                         


Q ss_pred             -------ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367          346 -------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHF  417 (465)
Q Consensus       346 -------~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i  417 (465)
                             .+|..-|+.+.|+| |++|++++|.|..|++||.++|+.+. +.+|-..|..++|+.|.+.|++|+.|.++++
T Consensus       357 kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKv  435 (480)
T KOG0271|consen  357 KKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKV  435 (480)
T ss_pred             ccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEE
Confidence                   12666789999999 99999999999999999999998775 8889999999999999999999999999999


Q ss_pred             EEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      |++++.++..   ++.+    +...+..+.++|+|+
T Consensus       436 w~V~tkKl~~---DLpG----h~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  436 WDVRTKKLKQ---DLPG----HADEVFAVDWSPDGQ  464 (480)
T ss_pred             EEeeeeeecc---cCCC----CCceEEEEEecCCCc
Confidence            9999987743   3444    557899999999864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.5e-29  Score=232.79  Aligned_cols=168  Identities=29%  Similarity=0.504  Sum_probs=151.3

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ..+...+.||.++|.|+.|+|+|.+||||+.|.++|+||+.+                                      
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------------------------------------  146 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------------------------------------  146 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------------------------------------
Confidence            356678899999999999999999999999999999999987                                      


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-e-cCCCceEEEEEccC----CCCE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDNY  364 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~-~h~~~V~~i~fsp~----~~~~  364 (465)
                             ..|.++..+|...|.|++|+||+ .|++|+.||+|++||..+|+++.. + +|...|++++|.|.    ..++
T Consensus       147 -------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~  219 (480)
T KOG0271|consen  147 -------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR  219 (480)
T ss_pred             -------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence                   36788999999999999999997 899999999999999999887544 4 69999999999874    4679


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      |++++.||.|+|||+..+.++. +.+|+..|+|++|--+| +|++|+.|++|++|+...+.+
T Consensus       220 las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~  280 (480)
T KOG0271|consen  220 LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL  280 (480)
T ss_pred             eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH
Confidence            9999999999999999887665 88999999999998766 899999999999999987655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-28  Score=219.31  Aligned_cols=198  Identities=20%  Similarity=0.410  Sum_probs=168.6

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      -.+.+.+.||...|..+..+++|++.+|+|.|+++++||+.++                                     
T Consensus        53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------------------------------   95 (315)
T KOG0279|consen   53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-------------------------------------   95 (315)
T ss_pred             CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------------------------------------
Confidence            3455778999999999999999999999999999999999874                                     


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCC-CCEEEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID-DNYFIS  367 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~-~~~l~s  367 (465)
                              ++.+.|.||...|.+++|++++ +++|||.|++|++|++..........  +.+.|.|++|+|.. ..+|++
T Consensus        96 --------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   96 --------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             --------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence                    3467788999999999999975 99999999999999998554443333  37899999999943 779999


Q ss_pred             EeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      +|.|++|++||+++.++.. +.+|.+.++.++++|||..+++|+.||.+.+||++.++-. ..+.       +...|.++
T Consensus       168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-ysl~-------a~~~v~sl  239 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-YSLE-------AFDIVNSL  239 (315)
T ss_pred             ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee-Eecc-------CCCeEeeE
Confidence            9999999999999998876 8899999999999999999999999999999999987652 2221       34679999


Q ss_pred             EEeecCCc------cceeeeec
Q 012367          447 QGRISKNY------DNFRRFQT  462 (465)
Q Consensus       447 ~f~p~gs~------d~~~~~~~  462 (465)
                      .|+|+.-.      -.+++|+.
T Consensus       240 ~fspnrywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  240 CFSPNRYWLCAATATSIKIWDL  261 (315)
T ss_pred             EecCCceeEeeccCCceEEEec
Confidence            99998533      34777764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.9e-28  Score=247.53  Aligned_cols=166  Identities=26%  Similarity=0.564  Sum_probs=154.9

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ...+...++||..|||.+.|+|.|-|+||||.|++-++|....                                     
T Consensus       482 t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-------------------------------------  524 (707)
T KOG0263|consen  482 TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-------------------------------------  524 (707)
T ss_pred             cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-------------------------------------
Confidence            3445567789999999999999999999999999999999875                                     


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                              ..|++.+.||.++|.|+.|+|+ +++++||.|++||+||+.+|..++.| +|..+|++++|+| +|+||++|
T Consensus       525 --------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg  595 (707)
T KOG0263|consen  525 --------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASG  595 (707)
T ss_pred             --------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeec
Confidence                    2678899999999999999997 69999999999999999999999999 6999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      +.|+.|.|||+.++.++. +.+|++.|.++.|+.||..||+|+.|.+|++||+..
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999987765 889999999999999999999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=215.15  Aligned_cols=201  Identities=21%  Similarity=0.446  Sum_probs=173.7

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      .+.+....+++|.+.|.|+++.|.+.+||||+.|++|+|||+.+++.                                 
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L---------------------------------  185 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL---------------------------------  185 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------
Confidence            34455688999999999999999999999999999999999998643                                 


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~s  367 (465)
                                  ..++.||...|..+++++- .||++++.|+.|+.||+...+.++.+ +|-..|.|++.+| .-+.|++
T Consensus       186 ------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t  252 (460)
T KOG0285|consen  186 ------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVT  252 (460)
T ss_pred             ------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEe
Confidence                        4567799999999999985 69999999999999999999999988 6999999999999 8899999


Q ss_pred             EeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          368 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      |+.|.++||||+++...+ .+.+|...|.+|.+.|-...+++|+.|++|++||+..++-.. .+..|.      +.+..+
T Consensus       253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~-tlt~hk------ksvral  325 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI-TLTHHK------KSVRAL  325 (460)
T ss_pred             cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE-eeeccc------ceeeEE
Confidence            999999999999997655 488999999999999988899999999999999999886532 333333      345555


Q ss_pred             EEe------ecCCccceeeeecC
Q 012367          447 QGR------ISKNYDNFRRFQTP  463 (465)
Q Consensus       447 ~f~------p~gs~d~~~~~~~p  463 (465)
                      ...      .+++-|+++.|..|
T Consensus       326 ~lhP~e~~fASas~dnik~w~~p  348 (460)
T KOG0285|consen  326 CLHPKENLFASASPDNIKQWKLP  348 (460)
T ss_pred             ecCCchhhhhccCCccceeccCC
Confidence            555      35788999999988

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=4.4e-26  Score=217.99  Aligned_cols=230  Identities=21%  Similarity=0.421  Sum_probs=178.2

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ....+|..|++||.+++|+..|.||++++.||++.+||..++.......................+........     -
T Consensus       267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~-----i  341 (524)
T KOG0273|consen  267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGC-----I  341 (524)
T ss_pred             hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCce-----E
Confidence            34567889999999999999999999999999999999988766554443333311111111111111111100     0


Q ss_pred             ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC--------C
Q 012367          293 EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI--------D  361 (465)
Q Consensus       293 ~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~--------~  361 (465)
                      .++.+ ...|+.++.||.+.|.+|.|+|.+ +|+|||.|+|++||......+...+ .|+..|+.+.|+|+        .
T Consensus       342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            12222 357899999999999999999976 8899999999999999988888888 58889999999883        3


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~  440 (465)
                      +..+++++.|++|++||+..+.++. +..|..+|.+++|+|+|+++++|+.||.|++|++.++++...   +.     ..
T Consensus       422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s---~~-----~~  493 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS---YQ-----GT  493 (524)
T ss_pred             CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe---ec-----CC
Confidence            4579999999999999999887776 779999999999999999999999999999999999877422   11     23


Q ss_pred             CceeeEEEeecCCcc
Q 012367          441 NKITGIQGRISKNYD  455 (465)
Q Consensus       441 ~~It~~~f~p~gs~d  455 (465)
                      ..|..+.|+..|.+-
T Consensus       494 ~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  494 GGIFELCWNAAGDKL  508 (524)
T ss_pred             CeEEEEEEcCCCCEE
Confidence            458888888888553

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.7e-27  Score=216.82  Aligned_cols=328  Identities=17%  Similarity=0.274  Sum_probs=228.1

Q ss_pred             ccccccCCccceeccccccccCcceeeeecccccCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhccc--ccccc
Q 012367          105 CFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNV--ETCMS  182 (465)
Q Consensus       105 ~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~  182 (465)
                      ...|+.|+.+.++.+++..++..+....+..+..... .+.          ..+...+++.|..+.++++...  +..++
T Consensus         5 ~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~-~~~----------~~~g~ll~kkwtSv~rlqKki~~Les~l~   73 (406)
T KOG0295|consen    5 LSERQRDEINMAIADLSGSNGYSESDRIFHKEASLAT-EMR----------KKDGGLLEKKWTSVDRLQKKIRELESKLD   73 (406)
T ss_pred             ecccchHHHHHHHHhhhccccccccceeEeecCCCcc-ccc----------ccccceeeccccccchhHHHHHHHHhhhc
Confidence            4567788888888888766666666655554443322 111          1123334455555555544422  12222


Q ss_pred             ccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 012367          183 EKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT  262 (465)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~  262 (465)
                      +......... +.    .+.+....+.+++...+.+.+|..+|+.+.|+|+-..++++++|++|++||..+++.......
T Consensus        74 ~~~~el~~g~-pt----~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG  148 (406)
T KOG0295|consen   74 ETGDELIAGD-PT----GSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG  148 (406)
T ss_pred             ccccccccCC-CC----cCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc
Confidence            2222211111 11    112222335667777899999999999999999999999999999999999999877443333


Q ss_pred             CCCCcccccCCCeEEeccCCCCceeE--ecCCceeeec--CCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeC
Q 012367          263 DDGGFGSNAKEGKIKFGKKKSSHVPV--VIPDEVFQIE--ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQV  337 (465)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~  337 (465)
                      ....+      ..+.+...+...+.+  ..+...|+..  ..+++.+.+|...|.+++|-|. ++++|++.|.+|+.|++
T Consensus       149 Ht~sv------~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~  222 (406)
T KOG0295|consen  149 HTDSV------FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC  222 (406)
T ss_pred             cccce------eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence            22221      112221111111111  1112233332  3467778899999999999985 59999999999999999


Q ss_pred             CCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeC-------------
Q 012367          338 GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD-------------  402 (465)
Q Consensus       338 ~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spd-------------  402 (465)
                      .++.|+.+| .|...|..++.+. ||.++++++.|.+|++|-+.++++.. +..|...|.+++|.|.             
T Consensus       223 ~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  223 DTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             ccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence            999999999 5999999999999 99999999999999999999886544 7889999999999873             


Q ss_pred             --CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          403 --GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       403 --g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                        ++++.+++.|++|++||+.++...+ ++..      +.+.|.++.|+|.|.|      | ++|+|+.
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~tg~cL~-tL~g------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVSTGMCLF-TLVG------HDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             CCccEEEeecccceEEEEeccCCeEEE-EEec------ccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence              2589999999999999999986643 3333      4589999999999988      2 3788874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.94  E-value=8.2e-26  Score=204.63  Aligned_cols=193  Identities=23%  Similarity=0.451  Sum_probs=165.4

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+++.+|++.+.|+.|-+|+ +|+|+|.|.++.+||++++                                       
T Consensus       137 v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g---------------------------------------  176 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG---------------------------------------  176 (343)
T ss_pred             eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc---------------------------------------
Confidence            346788999999999999865 7999999999999999985                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                            +.+..|.||.+.|.+++++| + +.++||+.|++.+|||++.+.+.+.| +|...|++|+|.| +|.-|++|+.
T Consensus       177 ------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSD  249 (343)
T KOG0286|consen  177 ------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSD  249 (343)
T ss_pred             ------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCC
Confidence                  34677889999999999999 4 59999999999999999999999999 6999999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367          371 DGKVRIWGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~  447 (465)
                      |++.|+||++..+.+....   ....|++++|+..|++|++|..|.+|.+||.-.++... .+.      .|.++|+.+.
T Consensus       250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~------GHeNRvScl~  322 (343)
T KOG0286|consen  250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLA------GHENRVSCLG  322 (343)
T ss_pred             CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-Eee------ccCCeeEEEE
Confidence            9999999999876655333   34679999999999999999999999999987655422 222      2558999999


Q ss_pred             EeecC------Cccc-eeee
Q 012367          448 GRISK------NYDN-FRRF  460 (465)
Q Consensus       448 f~p~g------s~d~-~~~~  460 (465)
                      .+|+|      ++|. +|+|
T Consensus       323 ~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  323 VSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             ECCCCcEEEecchhHheeec
Confidence            99985      5564 4554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=3.7e-26  Score=205.70  Aligned_cols=210  Identities=23%  Similarity=0.415  Sum_probs=171.4

Q ss_pred             cccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCC
Q 012367          205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (465)
Q Consensus       205 ~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (465)
                      +..++..-.+.+.|.||...|.+++|+||.+.++|||.|.+|++|++.....                            
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----------------------------  139 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----------------------------  139 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE----------------------------
Confidence            3345555577789999999999999999999999999999999999876321                            


Q ss_pred             ceeEecCCceeeecCCcceeee--ccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEc
Q 012367          285 HVPVVIPDEVFQIEESPLQELH--GHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN  358 (465)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fs  358 (465)
                                        .++.  +|.+.|.|+.|+|+  + +++++|.|++|++||+++.+....+ +|+++|+.++++
T Consensus       140 ------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS  201 (315)
T KOG0279|consen  140 ------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS  201 (315)
T ss_pred             ------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC
Confidence                              1121  34789999999996  3 8999999999999999998888887 799999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCc-c
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR-K  436 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~-~  436 (465)
                      | ||.+.++|+.||.+.+||++.++.+...++...|.+++|+|+.-.|+.+... .|+|||+.++..... ..+..+. .
T Consensus       202 p-DGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~  279 (315)
T KOG0279|consen  202 P-DGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSS  279 (315)
T ss_pred             C-CCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhcccccccccc
Confidence            9 9999999999999999999999999999999999999999998777776655 599999998766433 3333333 2


Q ss_pred             cccCCceeeEEEeecCCc------cc-eeeeec
Q 012367          437 KTSGNKITGIQGRISKNY------DN-FRRFQT  462 (465)
Q Consensus       437 ~~~~~~It~~~f~p~gs~------d~-~~~~~~  462 (465)
                      +.....-.+++|+++|+-      |+ +++|.+
T Consensus       280 ~~~~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  280 KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence            333456678889988753      44 566654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=5.4e-27  Score=216.41  Aligned_cols=253  Identities=17%  Similarity=0.295  Sum_probs=185.6

Q ss_pred             CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367          191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  270 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~  270 (465)
                      ......+++|.       -..+++...|.||+|.|.|+.|  +.+.++|||.|.+|+|||++++++...++.....+...
T Consensus       213 GlrDnTikiWD-------~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl  283 (499)
T KOG0281|consen  213 GLRDNTIKIWD-------KNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL  283 (499)
T ss_pred             ccccCceEEec-------cccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence            34455566663       4566788999999999999999  45699999999999999999998877666554443322


Q ss_pred             cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCC
Q 012367          271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHH  349 (465)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~  349 (465)
                      .......+.......+.++.....-  .....+.+.||...|+.+.|+. .+++++|.|.||++|++.++.+++++ +|.
T Consensus       284 rf~ng~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~-kyIVsASgDRTikvW~~st~efvRtl~gHk  360 (499)
T KOG0281|consen  284 RFSNGYMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWSTSTCEFVRTLNGHK  360 (499)
T ss_pred             EEeCCEEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeecccc-ceEEEecCCceEEEEeccceeeehhhhccc
Confidence            2222222222222222222111100  1234566889999999999875 49999999999999999999999999 588


Q ss_pred             CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ..|.|+++   .++++++||.|.+||+||+..|.++. +.+|.+-|.++.|.  .+.+++|..||+|++||+..+.-+..
T Consensus       361 RGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  361 RGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             ccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcc
Confidence            99999999   78999999999999999999998887 78999999999995  67899999999999999987654411


Q ss_pred             ---EeeecCcccccCCceeeEEEe-----ecCCccceeeee
Q 012367          429 ---KVDFHDRKKTSGNKITGIQGR-----ISKNYDNFRRFQ  461 (465)
Q Consensus       429 ---~~~~~~~~~~~~~~It~~~f~-----p~gs~d~~~~~~  461 (465)
                         .+.+.. ...+.+++-++||-     .+...|++.+|+
T Consensus       436 ~~~~~Cl~~-lv~hsgRVFrLQFD~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  436 PASTLCLRT-LVEHSGRVFRLQFDEFQIISSSHDDTILIWD  475 (499)
T ss_pred             cccchHHHh-hhhccceeEEEeecceEEEeccCCCeEEEEE
Confidence               222221 22244567777654     445556677775

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=3.8e-25  Score=201.04  Aligned_cols=197  Identities=27%  Similarity=0.479  Sum_probs=169.1

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ...+.+|++.|++++|+|+|.+|||||.|..|.+|++...                                        
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd----------------------------------------   79 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD----------------------------------------   79 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc----------------------------------------
Confidence            4567799999999999999999999999999999997642                                        


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                          .+....+.+|.+.|..+.|.+++ .+++++.|++|+.||+++|++++.++ |...|+.++-+.....++.||+.|+
T Consensus        80 ----ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~  155 (338)
T KOG0265|consen   80 ----CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG  155 (338)
T ss_pred             ----ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCc
Confidence                12344566999999999999875 99999999999999999999999995 8888998886554567888999999


Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      ++++||+++...+........+++++|..++..+.+|+-|+.|++||++.+...+   .+.+    +...||++..+|.|
T Consensus       156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsG----h~DtIt~lsls~~g  228 (338)
T KOG0265|consen  156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSG----HADTITGLSLSRYG  228 (338)
T ss_pred             eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---Eeec----ccCceeeEEeccCC
Confidence            9999999999988888888899999999999999999999999999998776533   2222    55799999999998


Q ss_pred             Cc------cc-eeeeec
Q 012367          453 NY------DN-FRRFQT  462 (465)
Q Consensus       453 s~------d~-~~~~~~  462 (465)
                      .|      |+ +++|+.
T Consensus       229 s~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  229 SFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             CccccccccceEEEEEe
Confidence            77      33 688874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=6.8e-25  Score=225.14  Aligned_cols=204  Identities=26%  Similarity=0.446  Sum_probs=165.5

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+++.+|...|++++|+|+|+++++|+.|++|+|||+...                                       
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---------------------------------------  235 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---------------------------------------  235 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---------------------------------------
Confidence            45667899999999999999999999999999999999431                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                           ...++++.||...|++++|+|.+ ++++|+.|++|+|||+++++++..+ .|.+.|++++|++ ++++|++++.|
T Consensus       236 -----~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d  309 (456)
T KOG0266|consen  236 -----GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD  309 (456)
T ss_pred             -----CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence                 23467888999999999999976 9999999999999999999999999 5999999999999 99999999999


Q ss_pred             CcEEEEeCCCCeE--E-ecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc--ccccCCcee
Q 012367          372 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--KKTSGNKIT  444 (465)
Q Consensus       372 g~I~iwd~~~~~~--~-~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~It  444 (465)
                      +.|+|||+.++..  . ...++..  .+++++|+|+++++++++.|+.+++||+...............  ........+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST  389 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence            9999999999983  3 3444444  5999999999999999999999999999977665442222221  111222234


Q ss_pred             eEEEeecCCccc-eeeeec
Q 012367          445 GIQGRISKNYDN-FRRFQT  462 (465)
Q Consensus       445 ~~~f~p~gs~d~-~~~~~~  462 (465)
                      +-.+..+|..|. +.+|+.
T Consensus       390 ~~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  390 GGKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             CCCeEEEEeCCceEEEEeC
Confidence            445556666665 455543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.5e-24  Score=222.61  Aligned_cols=201  Identities=35%  Similarity=0.590  Sum_probs=168.7

Q ss_pred             hhhhccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          215 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       215 ~~~l~~H-~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      .+.+.+| ...|.++.|+++|++|++++.|+.+++|+......                                     
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------  193 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------  193 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence            4555555 88999999999999999999999999999854321                                     


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC-CCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~-~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                            ...+.+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++ +|..+|++++|+| .++++++|+.
T Consensus       194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~  266 (456)
T KOG0266|consen  194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD  266 (456)
T ss_pred             ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence                  1344557899999999999987 9999999999999999 556888998 6999999999999 7799999999


Q ss_pred             CCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee-eeEeeecCcccccCCceeeEEE
Q 012367          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      |++|+|||++++++.. +.+|.+.|++++|+++|..|++++.||.|++||+.++... ...+...   .... .++.++|
T Consensus       267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---~~~~-~~~~~~f  342 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---ENSA-PVTSVQF  342 (456)
T ss_pred             CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC---CCCC-ceeEEEE
Confidence            9999999999987775 8889999999999999999999999999999999998764 2222111   1223 7999999


Q ss_pred             eecCCc------c-ceeeeecC
Q 012367          449 RISKNY------D-NFRRFQTP  463 (465)
Q Consensus       449 ~p~gs~------d-~~~~~~~p  463 (465)
                      +|++.|      | ..++|+..
T Consensus       343 sp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  343 SPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             CCCCcEEEEecCCCeEEEEEcc
Confidence            999876      4 36776643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=2.4e-24  Score=216.20  Aligned_cols=185  Identities=25%  Similarity=0.475  Sum_probs=164.8

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      ..+||...|+|++++|||+++|||++||+|+|||...+                                          
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------------------------------------------  382 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------------------------------------------  382 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------------------------------------------
Confidence            44799999999999999999999999999999999874                                          


Q ss_pred             ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCC-
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDG-  372 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg-  372 (465)
                         -++.+|..|+..|+.+.|+.. +.++++|.||+|+.||+...++.++|..+.  ...|++..| .|.++..|+.|. 
T Consensus       383 ---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F  458 (893)
T KOG0291|consen  383 ---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF  458 (893)
T ss_pred             ---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE
Confidence               346788899999999999975 589999999999999999999999997555  457888988 899999999887 


Q ss_pred             cEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       373 ~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .|.||++.+|+++. +.+|.++|.+++|+|+|..|++|+.|.+|++||+-...-+.+.+....       .++++.|+|+
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-------dvl~vsfrPd  531 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-------DVLAVSFRPD  531 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc-------ceeEEEEcCC
Confidence            49999999999997 889999999999999999999999999999999988766666665443       6899999999


Q ss_pred             CCc
Q 012367          452 KNY  454 (465)
Q Consensus       452 gs~  454 (465)
                      |.-
T Consensus       532 G~e  534 (893)
T KOG0291|consen  532 GKE  534 (893)
T ss_pred             CCe
Confidence            754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=8.8e-25  Score=204.16  Aligned_cols=248  Identities=19%  Similarity=0.318  Sum_probs=181.9

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      +....+.+..|+.+.........   +.-+||+++|-+|+..++|..++|||.|.+|+||+........ ......    
T Consensus       164 sas~Dqtl~Lw~~~~~~~~~~~~---~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~-~E~~s~----  235 (423)
T KOG0313|consen  164 SASMDQTLRLWKWNVGENKVKAL---KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE-LESSSN----  235 (423)
T ss_pred             EecCCceEEEEEecCchhhhhHH---hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccc-ccccch----
Confidence            34455555555555444333333   4445999999999999999999999999999999944321110 000000    


Q ss_pred             ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCC
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH  349 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~  349 (465)
                        .......             ..--.....|+..+.||..+|.++.|++...++++|.|.+|+.||+.++.++..+..+
T Consensus       236 --~rrk~~~-------------~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~  300 (423)
T KOG0313|consen  236 --RRRKKQK-------------REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN  300 (423)
T ss_pred             --hhhhhhh-------------hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC
Confidence              0000000             0000113468889999999999999999889999999999999999999999999999


Q ss_pred             CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eEE--ecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVV--DWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--~~~--~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      ...+|+.++| ..++|++|+.|..||+||.+++  .++  .+.+|.+.|.++.|+|.. .+|++|+.||++++||+++.+
T Consensus       301 ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  301 KSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             cceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            9999999999 9999999999999999999874  344  488999999999999955 578999999999999999998


Q ss_pred             eeeeEeeecCcccccCCceeeEEEeecCCccceeeee
Q 012367          425 LKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQ  461 (465)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~~~~~  461 (465)
                      -++..+..|+.+.-+...-.+.-+...|...+++++.
T Consensus       380 ~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  380 APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence            8888777776443333333333333334444566655

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.92  E-value=2.6e-25  Score=209.29  Aligned_cols=212  Identities=22%  Similarity=0.425  Sum_probs=172.8

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHK-GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG  268 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~  268 (465)
                      +.+....+|.|+.        .+...+.+++|. ..|++++|||+...++|+|.||+|+|||....              
T Consensus       155 SgD~gG~iKyWqp--------nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~--------------  212 (464)
T KOG0284|consen  155 SGDKGGMIKYWQP--------NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP--------------  212 (464)
T ss_pred             EcCCCceEEeccc--------chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--------------
Confidence            3455667777753        344556667766 99999999999999999999999999998752              


Q ss_pred             cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367          269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-  346 (465)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-  346 (465)
                                                     ++...+.||.-.|.+++|+|. ++++++|.|..|++||.+++.|+.++ 
T Consensus       213 -------------------------------kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh  261 (464)
T KOG0284|consen  213 -------------------------------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH  261 (464)
T ss_pred             -------------------------------chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence                                           345566899999999999996 69999999999999999999999998 


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCc
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .|+..|..+.|+| ++++|+|+|.|..++++|+++ .++..+.+|...|+++.|+| ...+|.+|+.||.|..|.+...+
T Consensus       262 ~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  262 GHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             hccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence            5999999999999 889999999999999999995 45566889999999999999 45688899999999999988332


Q ss_pred             eeeeEeeecCcccccCCceeeEEEeec------CCccc-eeeee
Q 012367          425 LKLEKVDFHDRKKTSGNKITGIQGRIS------KNYDN-FRRFQ  461 (465)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~It~~~f~p~------gs~d~-~~~~~  461 (465)
                      .. ..+     .-.+...|.++++.|-      |+-|. +++|.
T Consensus       341 p~-~~i-----~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  341 PL-GEI-----PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cc-cCC-----CcccccceeeeeccccceeEeecCCCcceeeec
Confidence            22 111     1224578999988886      45565 45554

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=1.8e-23  Score=214.51  Aligned_cols=173  Identities=20%  Similarity=0.296  Sum_probs=144.3

Q ss_pred             hhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       217 ~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .+.+|.+.|++++|+| ++++||||+.||+|+|||+.+......                                    
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~------------------------------------  113 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN------------------------------------  113 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc------------------------------------
Confidence            4679999999999999 889999999999999999975321000                                    


Q ss_pred             eecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCC
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                        ...++..+.+|...|.+++|+|+  ++|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+
T Consensus       114 --~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg  190 (493)
T PTZ00421        114 --ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK  190 (493)
T ss_pred             --cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence              01356778899999999999985  489999999999999999999888884 889999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEe-cccCCCC-eEEEEEeeCCCEEEEEE----cCCcEEEEEecCCceeee
Q 012367          373 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       373 ~I~iwd~~~~~~~~-~~~~~~~-V~sv~~spdg~~l~sgs----~dG~v~iwd~~~~~~~~~  428 (465)
                      +|+|||+++++.+. +.+|... +..+.|.|++..+++++    .|+.|++||++....++.
T Consensus       191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            99999999887664 5566654 45678999888877654    479999999987654443

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=2.1e-23  Score=215.29  Aligned_cols=211  Identities=18%  Similarity=0.289  Sum_probs=158.5

Q ss_pred             chhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          214 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ....+.+|.++|++++|+|+ +.+||||+.||+|+|||+.+......                                 
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------------------------------  112 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------------------------------  112 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------------------------------
Confidence            34567899999999999997 78999999999999999975321000                                 


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                          ....++..+.+|...|.+++|+|++  .|++++.|++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.
T Consensus       113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~  187 (568)
T PTZ00420        113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCV  187 (568)
T ss_pred             ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEec
Confidence                0012455677899999999999975  56799999999999999999888888888999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEe-cccCCCCeEEE-----EEeeCCCEEEEEEcCC----cEEEEEecCCceeeeEeeecCccc---
Q 012367          371 DGKVRIWGVCEKRVVD-WADVRDVISAI-----CYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK---  437 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv-----~~spdg~~l~sgs~dG----~v~iwd~~~~~~~~~~~~~~~~~~---  437 (465)
                      |+.|+|||++++..+. +.+|.+.+.+.     .|++++.+|++++.++    .|+|||++....++..+.++....   
T Consensus       188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~  267 (568)
T PTZ00420        188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI  267 (568)
T ss_pred             CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence            9999999999987765 66777665433     3458989999988774    799999996444444433333110   


Q ss_pred             ccCCceeeEEEeecCCccceeeeec
Q 012367          438 TSGNKITGIQGRISKNYDNFRRFQT  462 (465)
Q Consensus       438 ~~~~~It~~~f~p~gs~d~~~~~~~  462 (465)
                      .....-+++.|.......++++|..
T Consensus       268 p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EeeeCCCCCEEEEEECCCeEEEEEc
Confidence            0111223455555555566888875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.92  E-value=4.7e-24  Score=204.12  Aligned_cols=163  Identities=27%  Similarity=0.542  Sum_probs=151.0

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      .+..++.||.++|.+|.|+|.|.+|+|+|.|++++||+....                                      
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~--------------------------------------  391 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS--------------------------------------  391 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC--------------------------------------
Confidence            456788899999999999999999999999999999998753                                      


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC----------EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN----------YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID  361 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~----------~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~  361 (465)
                             ...+.+++|...|..+.|+|.+          .+++++.|.+|++||+..+.++..| +|..+|++++|+| +
T Consensus       392 -------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~  463 (524)
T KOG0273|consen  392 -------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-N  463 (524)
T ss_pred             -------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-C
Confidence                   3466788999999999999742          6999999999999999999999999 8999999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ++|+++|+.||.|.||++++++++......+.|..++|+.+|..|.++-.||.+++.|++
T Consensus       464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999999999988888889999999999999999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.6e-24  Score=186.96  Aligned_cols=183  Identities=27%  Similarity=0.497  Sum_probs=160.6

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+.|..|+++|+++.|+-+|+|.+|+|.|.+|++|+...+                                        
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------------------------------   49 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------------------------------   49 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------
Confidence            3567899999999999999999999999999999998753                                        


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                           ..++++.||...|.+++.+.++ .+++|+.|+.|.+||+.+|+.++.| +|...|+.++|+. +...+++|+.|.
T Consensus        50 -----~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~  123 (307)
T KOG0316|consen   50 -----ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS  123 (307)
T ss_pred             -----ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence                 4578899999999999998765 8999999999999999999999999 5999999999999 999999999999


Q ss_pred             cEEEEeCCCCe--EE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          373 KVRIWGVCEKR--VV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       373 ~I~iwd~~~~~--~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      ++++||.++..  ++ .+....+.|.++..+  +..|++|+.||+++.||++.+++...   +-      +.+|+++.|+
T Consensus       124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD---y~------g~pit~vs~s  192 (307)
T KOG0316|consen  124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD---YF------GHPITSVSFS  192 (307)
T ss_pred             eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh---hc------CCcceeEEec
Confidence            99999998753  33 366678889998886  56899999999999999999877432   22      3689999999


Q ss_pred             ecCCc
Q 012367          450 ISKNY  454 (465)
Q Consensus       450 p~gs~  454 (465)
                      ++++.
T Consensus       193 ~d~nc  197 (307)
T KOG0316|consen  193 KDGNC  197 (307)
T ss_pred             CCCCE
Confidence            99876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.5e-23  Score=183.41  Aligned_cols=205  Identities=25%  Similarity=0.496  Sum_probs=154.1

Q ss_pred             cchhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCC-ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          213 YTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      -..+.+++|++.|+.++|+|- |..|||||.|+.||||+... ....+.......+..   ....+...+.+...+....
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkr---sVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKR---SVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchh---eeeeeeecCCCcEEEEeec
Confidence            345788999999999999998 89999999999999999984 223333222222211   1111222112111111111


Q ss_pred             CCc--eeee---cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC---eEeEEe-cCCCceEEEEEccC
Q 012367          291 PDE--VFQI---EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPI  360 (465)
Q Consensus       291 ~~~--~~~~---~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~---~~l~~~-~h~~~V~~i~fsp~  360 (465)
                      ...  +|.-   +.+.+..+.||...|.+++|+++| +|++|+.|+.|-||.+..+   .|+..+ .|...|..+.|+| 
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-  160 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-  160 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-
Confidence            111  1111   235678899999999999999875 9999999999999999743   577777 4999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC----eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          361 DDNYFISGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ...+|+++|+|++|++|.-...    .+..+.+|...|.+++|+|.|..|++++.|++++||...
T Consensus       161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            9999999999999999987632    245688899999999999999999999999999999854

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.92  E-value=5.4e-25  Score=211.28  Aligned_cols=173  Identities=27%  Similarity=0.550  Sum_probs=157.6

Q ss_pred             cccccchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          209 FTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      +-+-....++.||+..|+++.|.| .+.+|++||.|+.|+||++..                                  
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----------------------------------  246 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----------------------------------  246 (503)
T ss_pred             eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec----------------------------------
Confidence            345566788999999999999999 899999999999999999875                                  


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~  366 (465)
                                ...+++++.||..+|.+++|++++ .++|+|.|++|++||+++|+++..|.....++|+.|+|.+.+.|+
T Consensus       247 ----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl  316 (503)
T KOG0282|consen  247 ----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL  316 (503)
T ss_pred             ----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence                      235688999999999999999976 899999999999999999999999999999999999995559999


Q ss_pred             EEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +|+.|+.|+.||+++++++. +..|-+.|..+.|-++|+.+++.+.|++++||+.+..-.
T Consensus       317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  317 VGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             EecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence            99999999999999999887 666889999999999999999999999999999886533

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9e-24  Score=196.52  Aligned_cols=177  Identities=20%  Similarity=0.400  Sum_probs=157.2

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ..+.+.+.+|.-.|.+++|-|.|.+++|++.|.+|+.|++.++.                                    
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~------------------------------------  226 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY------------------------------------  226 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce------------------------------------
Confidence            45677888999999999999999999999999999999999853                                    


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC---------
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI---------  360 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~---------  360 (465)
                               ++.++.+|...|..+..+.+| ++++|+.|.+|++|-+.+++|...+ .|..+|.|++|.|.         
T Consensus       227 ---------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  227 ---------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             ---------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence                     467888999999999999887 7889999999999999999999998 59999999999882         


Q ss_pred             -----CCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          361 -----DDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       361 -----~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                           .+.++.+++.|++|++||+.++.++ ++.+|.++|..++|+|.|++|+++..|+++++||+.+.+- ...+..|.
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah~  376 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-MKTLEAHE  376 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-eeccCCCc
Confidence                 2359999999999999999998766 5899999999999999999999999999999999986543 33444554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6e-24  Score=216.23  Aligned_cols=201  Identities=21%  Similarity=0.441  Sum_probs=171.4

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ..-.+...+..|.|+|+.|+|||++.+++|||.|-+|+||+..+.                                   
T Consensus        39 RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-----------------------------------   83 (1202)
T KOG0292|consen   39 RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-----------------------------------   83 (1202)
T ss_pred             hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-----------------------------------
Confidence            334456778899999999999999999999999999999999874                                   


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~s  367 (465)
                                +++.++.||-+.|..+.|++. .+++|+|.|.||+||+..+.+|+..+ +|+.+|.|.+|+| ....++|
T Consensus        84 ----------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVS  152 (1202)
T KOG0292|consen   84 ----------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVS  152 (1202)
T ss_pred             ----------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEE
Confidence                      456778899999999999986 69999999999999999999999999 6999999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCe----------------------------EEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367          368 GSIDGKVRIWGVCEKR----------------------------VVD--WADVRDVISAICYIPDGKGFIVGSITGTCHF  417 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~----------------------------~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i  417 (465)
                      +|.|.+|||||+..-+                            ++.  +.+|...|+.++|+|.-..|++|+.|..|++
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence            9999999999984311                            122  5678889999999999999999999999999


Q ss_pred             EEecCCce-eeeEeeecCcccccCCceeeEEEeec-------CCccceeeeec
Q 012367          418 YKASGNDL-KLEKVDFHDRKKTSGNKITGIQGRIS-------KNYDNFRRFQT  462 (465)
Q Consensus       418 wd~~~~~~-~~~~~~~~~~~~~~~~~It~~~f~p~-------gs~d~~~~~~~  462 (465)
                      |.++..+. ....      .+.|.+.++++-|.|.       +....+|+|+.
T Consensus       233 WrmnetKaWEvDt------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  233 WRMNETKAWEVDT------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             EEeccccceeehh------hhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            99986543 2222      3446689999999993       44445899885

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.91  E-value=1.1e-24  Score=205.05  Aligned_cols=182  Identities=23%  Similarity=0.436  Sum_probs=153.6

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+++|..+|++|.|+++|.+++||+.+|.|++|+..-                                          
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------------------------  169 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------------------------  169 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------------------------------------
Confidence            45689999999999999999999999999999998763                                          


Q ss_pred             eecCCcceeeeccc-cceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          296 QIEESPLQELHGHK-GDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       296 ~~~~~~~~~~~gh~-~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                          ..++.+++|. ..|.+++|+|. ..+++||.|++|+|||....+.-..+ +|.-.|.|++|+| ...++++||.|.
T Consensus       170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn  244 (464)
T KOG0284|consen  170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN  244 (464)
T ss_pred             ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence                2344555555 89999999984 59999999999999999988877777 5888999999999 889999999999


Q ss_pred             cEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       373 ~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .|++||.+++.++. +.+|+..|.++.|+|++++|++++.|..|++||+++.+- +.....      +.+.++++.++|-
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~------Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-LFTYRG------HKKDVTSLTWHPL  317 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-HHHhhc------chhhheeeccccc
Confidence            99999999988765 888999999999999999999999999999999994322 222222      2356666665553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.91  E-value=1.1e-22  Score=196.98  Aligned_cols=233  Identities=20%  Similarity=0.367  Sum_probs=170.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeE-EeccCCCCceeEecCCce--e
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI-KFGKKKSSHVPVVIPDEV--F  295 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~  295 (465)
                      .+|+|.|.+|+|+||++.++|+|.|.+++|||+.+..+..........     .+..+ .++. ....+.+...+.+  +
T Consensus       232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-----~dqqvG~lWq-kd~lItVSl~G~in~l  305 (603)
T KOG0318|consen  232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-----EDQQVGCLWQ-KDHLITVSLSGTINYL  305 (603)
T ss_pred             CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch-----hceEEEEEEe-CCeEEEEEcCcEEEEe
Confidence            389999999999999999999999999999999998776655443331     01111 1222 2222333333222  1


Q ss_pred             ee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE----------------------------
Q 012367          296 QI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV----------------------------  345 (465)
Q Consensus       296 ~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~----------------------------  345 (465)
                      +. ...+++.+.||...|+++..+|++ +|+||+.||.|.-||..++.+-+.                            
T Consensus       306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~  385 (603)
T KOG0318|consen  306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT  385 (603)
T ss_pred             cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence            11 234788899999999999999986 899999999999999654321100                            


Q ss_pred             --------------------------------------------------------------------------------
Q 012367          346 --------------------------------------------------------------------------------  345 (465)
Q Consensus       346 --------------------------------------------------------------------------------  345 (465)
                                                                                                      
T Consensus       386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg  465 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG  465 (603)
T ss_pred             EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence                                                                                            


Q ss_pred             ------------------ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCE
Q 012367          346 ------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKG  405 (465)
Q Consensus       346 ------------------~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~  405 (465)
                                        ..|..+|++++|+| ++.||++|...++|.+||+.+.++..  |.-|+..|.+++|+|+..+
T Consensus       466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~  544 (603)
T KOG0318|consen  466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL  544 (603)
T ss_pred             eEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE
Confidence                              13667788888888 88888888888888888888776643  6669999999999999999


Q ss_pred             EEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe------ecCCccceeeeecCC
Q 012367          406 FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR------ISKNYDNFRRFQTPY  464 (465)
Q Consensus       406 l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~------p~gs~d~~~~~~~p~  464 (465)
                      +|+|+.|-+|.||++......   +...+.   |...++++.|.      .+|..-++++|.+||
T Consensus       545 vATGSlDt~Viiysv~kP~~~---i~iknA---H~~gVn~v~wlde~tvvSsG~Da~iK~W~v~~  603 (603)
T KOG0318|consen  545 VATGSLDTNVIIYSVKKPAKH---IIIKNA---HLGGVNSVAWLDESTVVSSGQDANIKVWNVTL  603 (603)
T ss_pred             EEeccccceEEEEEccChhhh---eEeccc---cccCceeEEEecCceEEeccCcceeEEecccC
Confidence            999999999999999864433   332332   22337777654      347777899999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.91  E-value=5.2e-23  Score=182.67  Aligned_cols=196  Identities=21%  Similarity=0.370  Sum_probs=164.5

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      +..++.+|++-|+++.|..+|++++|||+||++||||+....                                      
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--------------------------------------  116 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--------------------------------------  116 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--------------------------------------
Confidence            567889999999999999999999999999999999998632                                      


Q ss_pred             eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                              ......|..+|+++..+|+ ..|++|..+|.|++||+....|...+  .....|.++...| +|.+++.+..
T Consensus       117 --------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nn  187 (311)
T KOG0315|consen  117 --------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANN  187 (311)
T ss_pred             --------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecC
Confidence                    2223357899999999996 58999999999999999998887776  3456899999999 9999999999


Q ss_pred             CCcEEEEeCCCCe-------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCcccccCCc
Q 012367          371 DGKVRIWGVCEKR-------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNK  442 (465)
Q Consensus       371 Dg~I~iwd~~~~~-------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~  442 (465)
                      .|..++|++.+.+       +..+..|...+..+.++||+++|++++.|.+|+||++++- +.++ ++..+.      ..
T Consensus       188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~------rW  260 (311)
T KOG0315|consen  188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQ------RW  260 (311)
T ss_pred             CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCC------ce
Confidence            9999999997643       2237789999999999999999999999999999999987 5444 333333      57


Q ss_pred             eeeEEEeecCCc------cc-eeeeecC
Q 012367          443 ITGIQGRISKNY------DN-FRRFQTP  463 (465)
Q Consensus       443 It~~~f~p~gs~------d~-~~~~~~p  463 (465)
                      +=+..|+.+|.|      |+ .|+|+.+
T Consensus       261 vWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  261 VWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEeeeeccCccEEEecCCCCceeecccc
Confidence            888888888776      33 6777654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.91  E-value=2.9e-23  Score=184.30  Aligned_cols=212  Identities=20%  Similarity=0.381  Sum_probs=175.5

Q ss_pred             CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367          191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  270 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~  270 (465)
                      .+.+..++.|+.       ..-.+..+++...+.|+.+.+.|++++||+|+.- .||+||+.+..               
T Consensus        16 A~YDhTIRfWqa-------~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~n---------------   72 (311)
T KOG0315|consen   16 AGYDHTIRFWQA-------LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNN---------------   72 (311)
T ss_pred             ccCcceeeeeeh-------hcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCC---------------
Confidence            344455555543       3445667887778889999999999999999874 69999998742               


Q ss_pred             cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCC
Q 012367          271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH  349 (465)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~  349 (465)
                                                  ..|+.++.+|+..|..+.|..+| .++|||.||+++|||++...|.+.|.|.
T Consensus        73 ----------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~  124 (311)
T KOG0315|consen   73 ----------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN  124 (311)
T ss_pred             ----------------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence                                        24789999999999999999876 8999999999999999999999999999


Q ss_pred             CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      .+|+++..+| +...|++|..+|.|+|||+.......  .......|.++...|||.+++.+...|+|++|++-+.....
T Consensus       125 spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  125 SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence            9999999999 88899999999999999998765443  34455789999999999999999999999999998744322


Q ss_pred             eEeeecCcccccCCceeeEEEeecCCcc
Q 012367          428 EKVDFHDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       428 ~~~~~~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                       .+....+.+.+...|+.+.++|++.|.
T Consensus       204 -~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  204 -ELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             -cceEhhheecccceEEEEEECCCCcEE
Confidence             333333455667899999999998773

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.3e-23  Score=195.39  Aligned_cols=257  Identities=20%  Similarity=0.343  Sum_probs=197.8

Q ss_pred             hhcccCCCCccCCCchhhHHHHHHHHHHhhhccccccccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCC
Q 012367          144 VDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG  223 (465)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  223 (465)
                      ..+|..-.+....+++++++.+.++.+..++...-....-+           .+..-+....-..-.+.+..|+|+.|++
T Consensus       157 l~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsld-----------svsll~Dh~c~~~qip~qt~qil~~htd  225 (519)
T KOG0293|consen  157 LDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLD-----------SVSLLSDHFCGRLQIPSQTWQILQDHTD  225 (519)
T ss_pred             HHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccc-----------hhhhhhhcccCcccCCchhhhhHhhCCC
Confidence            33333333444556889999999999988865321110000           0111111111122345577799999999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .||-+.||++|+|||||+.|.+..||.+.....                                          -+..+
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------------------------------------------~kl~~  263 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------------------------------------------FKLKK  263 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------------------------------------------eeeee
Confidence            999999999999999999999999999864211                                          13467


Q ss_pred             eeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          304 ELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      ++.||..+|.-+.|+|+ .+|++|+.|..+.+||+.+|.+...+.++  ..+.+++|.| |+..+++|+.|+.|..||+.
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC
Confidence            88899999999999997 59999999999999999999999999655  7899999999 99999999999999999998


Q ss_pred             CCeEEecccCC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc----
Q 012367          381 EKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD----  455 (465)
Q Consensus       381 ~~~~~~~~~~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d----  455 (465)
                      ......|.+.. ..|.+++.++||+++++.+.|..|++|+..+..-.        +.++-..+|++++++-++.|-    
T Consensus       343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--------~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--------GLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh--------ccccccCceeEEEEcCCCcEEEEEc
Confidence            88777777754 56999999999999999999999999998753221        123334689999999988773    


Q ss_pred             ---ceeeeec
Q 012367          456 ---NFRRFQT  462 (465)
Q Consensus       456 ---~~~~~~~  462 (465)
                         .+++|+.
T Consensus       415 ~~qei~LWDl  424 (519)
T KOG0293|consen  415 QDQEIHLWDL  424 (519)
T ss_pred             ccCeeEEeec
Confidence               2677764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=195.26  Aligned_cols=222  Identities=17%  Similarity=0.283  Sum_probs=174.4

Q ss_pred             HHHhhhccccccccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEE
Q 012367          169 IISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVR  247 (465)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~  247 (465)
                      +.+.++-..-.++..+.+..+..+..+.+++-..+.       -.....+.+|+.+|..+.|+|++ ..|++|+.|++++
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK  136 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence            344444333344444555555556666666554222       22347788999999999999965 4899999999999


Q ss_pred             EEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--CEEEE
Q 012367          248 IWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLS  325 (465)
Q Consensus       248 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s  325 (465)
                      +||+.+..                                             ....+.+|++.|.|.+|+|.  .+++|
T Consensus       137 ~~d~s~a~---------------------------------------------v~~~l~~htDYVR~g~~~~~~~hivvt  171 (487)
T KOG0310|consen  137 YWDLSTAY---------------------------------------------VQAELSGHTDYVRCGDISPANDHIVVT  171 (487)
T ss_pred             EEEcCCcE---------------------------------------------EEEEecCCcceeEeeccccCCCeEEEe
Confidence            99998742                                             13367799999999999985  38999


Q ss_pred             EeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeEEe-cccCCCCeEEEEEeeC
Q 012367          326 CSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD-WADVRDVISAICYIPD  402 (465)
Q Consensus       326 ~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~~~-~~~~~~~V~sv~~spd  402 (465)
                      ||.||+|++||++.. ..+..+.|..+|..+.|-| .|..|++++ ...|+|||+.+ ++.+. ...|...|+|+++..+
T Consensus       172 GsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~  249 (487)
T KOG0310|consen  172 GSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD  249 (487)
T ss_pred             cCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence            999999999999987 7888899999999999999 889999987 57899999985 45554 4449999999999999


Q ss_pred             CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          403 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       403 g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +..|++|+-||.|++||+.+.+.. ..+.+.+       +|-++.++|++
T Consensus       250 ~~rLlS~sLD~~VKVfd~t~~Kvv-~s~~~~~-------pvLsiavs~dd  291 (487)
T KOG0310|consen  250 STRLLSGSLDRHVKVFDTTNYKVV-HSWKYPG-------PVLSIAVSPDD  291 (487)
T ss_pred             CceEeecccccceEEEEccceEEE-Eeeeccc-------ceeeEEecCCC
Confidence            999999999999999997665442 2555554       79999999954

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.90  E-value=6.6e-23  Score=186.53  Aligned_cols=231  Identities=17%  Similarity=0.257  Sum_probs=185.2

Q ss_pred             ccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367          181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS  260 (465)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~  260 (465)
                      +.++.....+...+..+-.|+--..+..+.      .+++|+++|..+.|.+|++.++|+|.|.+|+.||+++++     
T Consensus        55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~-----  123 (338)
T KOG0265|consen   55 FHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK-----  123 (338)
T ss_pred             ECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-----
Confidence            355444445556666777776555555553      345999999999999999999999999999999999864     


Q ss_pred             ecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCC
Q 012367          261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG  338 (465)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~  338 (465)
                                                              .++.+++|..-|+.+..+.-|  ++.|++.|++++|||++
T Consensus       124 ----------------------------------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  124 ----------------------------------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             ----------------------------------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence                                                    466677899999999854333  78899999999999999


Q ss_pred             CCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367          339 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHF  417 (465)
Q Consensus       339 ~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i  417 (465)
                      +..+++++.....++++.|.. .+.-+++|+.|+.|++||++.+... .+.+|.+.|+.+..+|+|.++++-+.|.++++
T Consensus       164 ~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv  242 (338)
T KOG0265|consen  164 KKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV  242 (338)
T ss_pred             ccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEE
Confidence            999999999899999999999 8899999999999999999887665 48899999999999999999999999999999


Q ss_pred             EEecCCceeee-EeeecCcccccCCceeeEEEeecCCccc-------eeeeecC
Q 012367          418 YKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRISKNYDN-------FRRFQTP  463 (465)
Q Consensus       418 wd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs~d~-------~~~~~~p  463 (465)
                      ||++.-..... ..-+.+....-.+......++|++++-+       ..+|++-
T Consensus       243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~  296 (338)
T KOG0265|consen  243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT  296 (338)
T ss_pred             EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence            99986555444 2223333333345667778888876644       4566654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.6e-23  Score=204.88  Aligned_cols=174  Identities=24%  Similarity=0.437  Sum_probs=155.6

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      ++..+...+++.+|.+.|+||+.||...+++|+|.|-+|++||.+..                                 
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---------------------------------  129 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---------------------------------  129 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---------------------------------
Confidence            44455667889999999999999999999999999999999999863                                 


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-CCC
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI-DDN  363 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~-~~~  363 (465)
                                 ..+.+++.||...|.+++|+|.  +.++|++-|+||+||.+.+..+..++ +|...|+|+.|-|. +..
T Consensus       130 -----------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkp  198 (794)
T KOG0276|consen  130 -----------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKP  198 (794)
T ss_pred             -----------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcc
Confidence                       2356789999999999999984  59999999999999999999998888 59999999999872 335


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      |++||+.|.+|+|||..+..++. +.+|...|..++|+|.-..+++|+.||+++||+..+-++
T Consensus       199 ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  199 YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            99999999999999999988775 888999999999999999999999999999999876554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2e-22  Score=179.56  Aligned_cols=191  Identities=18%  Similarity=0.370  Sum_probs=164.7

Q ss_pred             CCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          221 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       221 H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      -.+.+..++|+++. +.+++++.||+++|||...                                            ..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s   94 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS   94 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence            46779999999964 4899999999999999553                                            23


Q ss_pred             CcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      .|++.++.|...|.++.|++-  ..++++|.|++|+||+...++.+.+| +|..-|+..+|+|..++.|+++|.|+++++
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            688999999999999999974  37888899999999999999999999 588999999999999999999999999999


Q ss_pred             EeCCC-CeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec---
Q 012367          377 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS---  451 (465)
Q Consensus       377 wd~~~-~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~---  451 (465)
                      ||++. ++.+.+..|...|.++.|+. +...+++|+.|+.|+.||++.-+.++..+..|+      -.|..+.|+|.   
T Consensus       175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~------~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG------LAVRKVKFSPHHAS  248 (311)
T ss_pred             EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc------eEEEEEecCcchhh
Confidence            99974 55556788888999999997 567899999999999999998888776665554      68889999886   


Q ss_pred             ----CCccc-eeeee
Q 012367          452 ----KNYDN-FRRFQ  461 (465)
Q Consensus       452 ----gs~d~-~~~~~  461 (465)
                          .+||- .|+|+
T Consensus       249 lLaSasYDmT~riw~  263 (311)
T KOG0277|consen  249 LLASASYDMTVRIWD  263 (311)
T ss_pred             HhhhccccceEEecc
Confidence                68996 56665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.90  E-value=1.5e-21  Score=189.37  Aligned_cols=211  Identities=25%  Similarity=0.377  Sum_probs=162.3

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee-ec-CCCCcc---cccCCCe-EEeccCCC
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-FT-DDGGFG---SNAKEGK-IKFGKKKS  283 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~-~~-~~~~~~---~~~~~~~-~~~~~~~~  283 (465)
                      ..+.....+..|..+++-.+|||.|-|+|+|...|+|||||........+. +. ..+.+.   ....... ...+....
T Consensus        47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre  126 (603)
T KOG0318|consen   47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE  126 (603)
T ss_pred             CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence            344456778899999999999999999999999999999998774332221 11 111111   1111111 22222222


Q ss_pred             CceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccC
Q 012367          284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI  360 (465)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~  360 (465)
                      ....++.++     .+..+-++.||...|++++|-|..  .++||+.|++|.+|+-.-.+....++ |+..|.|+.|+| 
T Consensus       127 rfg~~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-  200 (603)
T KOG0318|consen  127 RFGHVFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-  200 (603)
T ss_pred             ceeEEEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-
Confidence            233332222     345677899999999999999876  89999999999999977667667774 888999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEe-c---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          361 DDNYFISGSIDGKVRIWGVCEKRVVD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~-~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      |+.+|++.+.||+|.+||-.+++.+. +   .+|.+.|.+++|+||++.+++++.|.+++|||+.++++.
T Consensus       201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            99999999999999999999988765 3   379999999999999999999999999999999876553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.3e-21  Score=169.96  Aligned_cols=207  Identities=21%  Similarity=0.386  Sum_probs=154.4

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCC--CceeEecC-
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKS--SHVPVVIP-  291 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~-  291 (465)
                      +.-+.|++.|.|.+|||+|.+||||+.|.+|++..+....+...  .+.-.+. .......+.+.....  ..+..... 
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc--CcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence            34457999999999999999999999999999987764322111  0000000 000111111211111  11111111 


Q ss_pred             --Cceeee---cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---C-----CCceEEEEEc
Q 012367          292 --DEVFQI---EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---H-----HNYVTCVQFN  358 (465)
Q Consensus       292 --~~~~~~---~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h-----~~~V~~i~fs  358 (465)
                        .+++..   .+++++.+.||++.|.++---++-++++|+.|++|+.||++-..|+.++.   |     +..|.+++..
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd  240 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD  240 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence              122322   46788899999999999864455699999999999999999999999884   2     3579999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      | .+++|++|-.|...-+||++.++.+. +..|...|.++.|+|...++++++.|..|++-|+.+...
T Consensus       241 p-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla  307 (350)
T KOG0641|consen  241 P-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA  307 (350)
T ss_pred             C-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence            9 99999999999999999999998776 888999999999999999999999999999999986543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=6.2e-23  Score=205.85  Aligned_cols=185  Identities=24%  Similarity=0.432  Sum_probs=160.3

Q ss_pred             CCcchhhHHhhccccc-ccc-ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367          191 KPKANKMEVKQNKKKC-MEF-TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG  268 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~  268 (465)
                      .+.+..+++|+..+.. ..+ ..+.+..+-.+|...|+|++++|+.+++||||.|.+.+||+++..              
T Consensus       430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~--------------  495 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL--------------  495 (775)
T ss_pred             ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc--------------
Confidence            3456677777766521 122 223344456799999999999999999999999999999999853              


Q ss_pred             cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec
Q 012367          269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD  347 (465)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~  347 (465)
                                                     ....++.||+..|.|+.|+|. ..++|+|.|+||+||.+.+..|+++|.
T Consensus       496 -------------------------------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  496 -------------------------------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE  544 (775)
T ss_pred             -------------------------------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec
Confidence                                           346778899999999999984 689999999999999999999999995


Q ss_pred             -CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          348 -HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       348 -h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                       |...|..+.|-. ++..|+|++.||.|++|++.++.+.. +..|.+.|++++-+|.+.++++|+.||.|.+|.=.
T Consensus       545 GH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  545 GHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             CccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence             999999999999 99999999999999999999988775 88899999999999999999999999999999643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=2.5e-21  Score=212.58  Aligned_cols=239  Identities=17%  Similarity=0.272  Sum_probs=166.6

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCCCcccccCCCeEEeccCCCCceeEecCC--
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (465)
                      ..+.+|.+.|++++|+|+|++|||||.|++|+||++........... +............+.+.............+  
T Consensus       477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCe
Confidence            45667999999999999999999999999999999764211000000 000000000011111111111111111111  


Q ss_pred             -ceeeec-CCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 -EVFQIE-ESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 -~~~~~~-~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                       .+|++. .+.+..+.+|.+.|++++|+| + .+|+||+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|
T Consensus       557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence             234443 456677889999999999996 4 489999999999999999999999888778899999976589999999


Q ss_pred             eCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-----eeeEeeecCcccccCC
Q 012367          369 SIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-----KLEKVDFHDRKKTSGN  441 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~  441 (465)
                      +.|+.|++||+++..  ...+.+|...|++++|. ++..|++++.||+|++||+.....     .+..+..      +..
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g------h~~  709 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG------HTN  709 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC------CCC
Confidence            999999999998754  34577899999999997 788999999999999999975321     1222222      335


Q ss_pred             ceeeEEEeecCC------ccc-eeeee
Q 012367          442 KITGIQGRISKN------YDN-FRRFQ  461 (465)
Q Consensus       442 ~It~~~f~p~gs------~d~-~~~~~  461 (465)
                      .+..+.|+|++.      .|+ +.+|+
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            677777777643      344 56665

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.89  E-value=5.3e-22  Score=184.88  Aligned_cols=261  Identities=17%  Similarity=0.196  Sum_probs=186.3

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF  261 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~  261 (465)
                      .|......+.....+.-+|......       ...++.+|+..|+++.||.+|.|||||+.+|.|+||++.++...+...
T Consensus        73 ~P~~~l~aTGGgDD~AflW~~~~ge-------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   73 HPNNNLVATGGGDDLAFLWDISTGE-------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             CCCCceEEecCCCceEEEEEccCCc-------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence            4444444555666666666443332       335678999999999999999999999999999999999988777765


Q ss_pred             cCCCCcccccCCC--eEEeccCCCCceeEecCCceeeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC
Q 012367          262 TDDGGFGSNAKEG--KIKFGKKKSSHVPVVIPDEVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV  337 (465)
Q Consensus       262 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~  337 (465)
                      .....+.......  .+.+.........      +|.+.. ...+.+.||+.++++=.|.|+| .++++..||+|++|++
T Consensus       146 ~e~~dieWl~WHp~a~illAG~~DGsvW------mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~  219 (399)
T KOG0296|consen  146 QEVEDIEWLKWHPRAHILLAGSTDGSVW------MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP  219 (399)
T ss_pred             cccCceEEEEecccccEEEeecCCCcEE------EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence            3322222222111  1222222222111      233333 5678899999999999999986 8999999999999999


Q ss_pred             CCCeEeEEecC--C--------------------------------------------------CceEEEEEccC--CCC
Q 012367          338 GCNQCLNVFDH--H--------------------------------------------------NYVTCVQFNPI--DDN  363 (465)
Q Consensus       338 ~~~~~l~~~~h--~--------------------------------------------------~~V~~i~fsp~--~~~  363 (465)
                      .+++++..+..  .                                                  ..+.|+.|.|.  .-.
T Consensus       220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp  299 (399)
T KOG0296|consen  220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP  299 (399)
T ss_pred             CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence            99988766530  0                                                  01112222221  223


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I  443 (465)
                      ++|+|+.||+|.|||+...++.....|...|+.+.|-+ ..+|++++.+|.|+.||.+++.+..   .+++    |...|
T Consensus       300 L~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~---~y~G----H~~~I  371 (399)
T KOG0296|consen  300 LAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF---TYTG----HQMGI  371 (399)
T ss_pred             hhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEE---EEec----Cchhe
Confidence            68899999999999999999999999999999999999 7799999999999999999998753   3344    44678


Q ss_pred             eeEEEeecC------Cccc-eeeeecC
Q 012367          444 TGIQGRISK------NYDN-FRRFQTP  463 (465)
Q Consensus       444 t~~~f~p~g------s~d~-~~~~~~p  463 (465)
                      ..+.++|++      +.|+ .++|..|
T Consensus       372 l~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  372 LDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            888888874      4455 4555554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=5.4e-22  Score=199.39  Aligned_cols=249  Identities=20%  Similarity=0.308  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHhhhc--ccc---ccccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCE
Q 012367          162 VKKLWKRIISMKKR--NVE---TCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRY  236 (465)
Q Consensus       162 ~~~~~k~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~  236 (465)
                      +..|+...+-+++.  -..   ...+++.....+...++++|+|..       ..-+|..++..|+..|+++.|+..|+.
T Consensus       334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~-------~SgfC~vTFteHts~Vt~v~f~~~g~~  406 (893)
T KOG0291|consen  334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT-------QSGFCFVTFTEHTSGVTAVQFTARGNV  406 (893)
T ss_pred             EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEec-------cCceEEEEeccCCCceEEEEEEecCCE
Confidence            56777777666544  111   122555555667778888888843       445788999999999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce-----eee-cCCcceeeecccc
Q 012367          237 LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV-----FQI-EESPLQELHGHKG  310 (465)
Q Consensus       237 LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~gh~~  310 (465)
                      |+++|-||+|+.||+.....-..+..+....       ...+.....+...+......     |.. .++.+-.+.||.+
T Consensus       407 llssSLDGtVRAwDlkRYrNfRTft~P~p~Q-------fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg  479 (893)
T KOG0291|consen  407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ-------FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG  479 (893)
T ss_pred             EEEeecCCeEEeeeecccceeeeecCCCcee-------eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence            9999999999999998765544444333221       12222222222222222222     222 3567778999999


Q ss_pred             ceEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--
Q 012367          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--  386 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--  386 (465)
                      +|.+++|+|.+ .|+|+|.|+|||+||+-. ...+.++.+...|..++|.| +|.-++++..||.|.+||+..+..+.  
T Consensus       480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccc
Confidence            99999999975 899999999999999854 35677888999999999999 99999999999999999996543221  


Q ss_pred             -------------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          387 -------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       387 -------------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                                         -.......++++|++||..+++|+....|++|++.++-+
T Consensus       559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence                               111235689999999999999999999999999986554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-21  Score=174.91  Aligned_cols=186  Identities=20%  Similarity=0.334  Sum_probs=162.0

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .|+||..+|+.|+|+.+|.+|.|++.|.++.||--.++                                          
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG------------------------------------------   42 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG------------------------------------------   42 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC------------------------------------------
Confidence            36799999999999999999999999999999976553                                          


Q ss_pred             ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-----
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----  370 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~-----  370 (465)
                         ..+-++.||++.|+|++...+ ..+++|+.|.+++|||+.+|+++..+....+|..+.|++ ++++++....     
T Consensus        43 ---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~  118 (327)
T KOG0643|consen   43 ---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGY  118 (327)
T ss_pred             ---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence               457788999999999999865 699999999999999999999999999999999999999 8888877654     


Q ss_pred             CCcEEEEeCCC-------Ce-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          371 DGKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       371 Dg~I~iwd~~~-------~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      .+.|.++|++.       .. ...+..+...++.+-|.|-+++|++|..||.|.+||+++++...+....|+      ..
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~------~~  192 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS------SK  192 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc------cc
Confidence            36799999973       33 445666778999999999999999999999999999999877666655555      58


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      |+.+|++++.+|
T Consensus       193 Ind~q~s~d~T~  204 (327)
T KOG0643|consen  193 INDLQFSRDRTY  204 (327)
T ss_pred             cccccccCCcce
Confidence            999999998655

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=3.6e-22  Score=193.01  Aligned_cols=232  Identities=19%  Similarity=0.289  Sum_probs=164.1

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...-.|++|+..|.++++.|.|..|+|||.|-+|++||+.........+.....-. ....+.+.+...+....++....
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-THQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccc-ccccceeeecCCCCeEEEEecCc
Confidence            33456789999999999999999999999999999999988766555443322111 11122222333333222222211


Q ss_pred             --ceeeecC----------C---cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEecC------
Q 012367          293 --EVFQIEE----------S---PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVFDH------  348 (465)
Q Consensus       293 --~~~~~~~----------~---~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~~h------  348 (465)
                        .+++-.+          .   -+..-.||...++|-+|+|.  +.++|++.||++||||+... ..+.+|.+      
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence              1111111          1   12345699999999999996  48999999999999999754 34455532      


Q ss_pred             CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE----ecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV----DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .-.|+.++|+| ++.+||+|+.||.|.+|+.....+.    .-..|..  .|++|+|++||++|++-+.|+++++||++.
T Consensus       317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            23789999999 9999999999999999998553321    2345665  899999999999999999999999999998


Q ss_pred             Cceeee-EeeecCcccccCCceeeEEEeec
Q 012367          423 NDLKLE-KVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       423 ~~~~~~-~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .+.++. ...+..     ...-|.+.|+|+
T Consensus       396 ~kkpL~~~tgL~t-----~~~~tdc~FSPd  420 (641)
T KOG0772|consen  396 FKKPLNVRTGLPT-----PFPGTDCCFSPD  420 (641)
T ss_pred             cccchhhhcCCCc-----cCCCCccccCCC
Confidence            877766 333333     245566677776

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.6e-20  Score=178.04  Aligned_cols=224  Identities=23%  Similarity=0.454  Sum_probs=166.2

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc-
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-  293 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (465)
                      .+++++|.++|++++|+|++++|++++.||.|++|++.+..............      ..+.+.............+. 
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~~~~i   75 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV------RDVAASADGTYLASGSSDKTI   75 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcce------eEEEECCCCCEEEEEcCCCeE
Confidence            35778999999999999999999999999999999998765433332222211      11111111111111111121 


Q ss_pred             -eeeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEe
Q 012367          294 -VFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       294 -~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                       +|++.. +.+..+.+|...|.++.|++++ ++++++.|+.|++||+.+++....+. |...|.+++|+| ++.++++++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  154 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSS  154 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEc
Confidence             233332 4667788899999999999875 66677779999999999888888885 888999999999 788999888


Q ss_pred             CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      .|+.|++||+++++... +..|...|.+++|+|+++.+++++.+|.+++||+...+... .+.      .+...|+++.|
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~------~~~~~i~~~~~  227 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLR------GHENGVNSVAF  227 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec-chh------hcCCceEEEEE
Confidence            89999999998776554 56777899999999999999999999999999998754422 221      22347888888


Q ss_pred             eecC
Q 012367          449 RISK  452 (465)
Q Consensus       449 ~p~g  452 (465)
                      +|++
T Consensus       228 ~~~~  231 (289)
T cd00200         228 SPDG  231 (289)
T ss_pred             cCCC
Confidence            8863

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=6.3e-22  Score=198.69  Aligned_cols=222  Identities=21%  Similarity=0.376  Sum_probs=161.6

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      +.+.+++. .+.||+..|.++....+|.+|||||.|++|++|.+++............  ......+.+.....+.....
T Consensus       352 ~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~--gH~~svgava~~~~~asffv  428 (775)
T KOG0319|consen  352 TLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN--GHTNSVGAVAGSKLGASFFV  428 (775)
T ss_pred             ecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc--ccccccceeeecccCccEEE
Confidence            44445544 8899999999999777889999999999999999844322111111000  00011111111111111111


Q ss_pred             EecCC---ceeeecC------Ccc----eeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCce
Q 012367          288 VVIPD---EVFQIEE------SPL----QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYV  352 (465)
Q Consensus       288 ~~~~~---~~~~~~~------~~~----~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V  352 (465)
                      ....+   ++|.+..      .+.    .+...|...|++++++|+ .+++|||.|++++||++.+...+.++ +|...|
T Consensus       429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv  508 (775)
T KOG0319|consen  429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV  508 (775)
T ss_pred             EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccce
Confidence            11111   1222221      111    234579999999999986 48999999999999999999999999 699999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEee
Q 012367          353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  431 (465)
Q Consensus       353 ~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~  431 (465)
                      +|+.|+| .++.++|+|.|++|+||.+.+..++. +.+|...|..+.|-.+|+.|++++.||.+++|++.++.- ...++
T Consensus       509 w~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD  586 (775)
T KOG0319|consen  509 WCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLD  586 (775)
T ss_pred             EEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhh
Confidence            9999999 88999999999999999999988775 788999999999999999999999999999999997754 22455


Q ss_pred             ecC
Q 012367          432 FHD  434 (465)
Q Consensus       432 ~~~  434 (465)
                      .|.
T Consensus       587 ~H~  589 (775)
T KOG0319|consen  587 AHN  589 (775)
T ss_pred             hcc
Confidence            555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.8e-22  Score=194.94  Aligned_cols=235  Identities=18%  Similarity=0.324  Sum_probs=179.7

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEE--eccCCCCceeEecCC
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK--FGKKKSSHVPVVIPD  292 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  292 (465)
                      .+++..|...|.+|.|||....++++-..|.|.|||.++..........+.++..+.......  +.......+.     
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir-----   80 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR-----   80 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE-----
Confidence            456777999999999999999999999999999999998776665555554443332222111  1111112222     


Q ss_pred             ceeee-cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQI-EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~-~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                       +|+. ....++.|.+|.+.|.+++.+|. .+++|+|.|-+|++||...+ .|.++| +|..+|.+++|+|.|.+.|+++
T Consensus        81 -Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   81 -VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             -EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence             2333 24678899999999999999996 59999999999999999866 577788 6999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeE-EecccCCCCeEEEEEeeCC--CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          369 SIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~-~~~~~~~~~V~sv~~spdg--~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      |.|++|+||.+-...+ .++.+|...|++|+|-|.|  .+|++|+.|.+++|||..+..- ..++..|      .+.|..
T Consensus       160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-V~TLeGH------t~Nvs~  232 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-VQTLEGH------TNNVSF  232 (794)
T ss_pred             eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-HHHhhcc------cccceE
Confidence            9999999999976544 4588999999999999855  6999999999999999886433 2233323      345666


Q ss_pred             EEEeec------CCcc-ceeeeec
Q 012367          446 IQGRIS------KNYD-NFRRFQT  462 (465)
Q Consensus       446 ~~f~p~------gs~d-~~~~~~~  462 (465)
                      +.|+|.      |+-| ++|+|..
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecC
Confidence            666664      6555 5788874

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.88  E-value=4.1e-23  Score=189.30  Aligned_cols=166  Identities=28%  Similarity=0.509  Sum_probs=145.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      +.+.-+-|..|||||+||+||+.||.|.|||..+++......                                     .
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-------------------------------------Y  253 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-------------------------------------Y  253 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-------------------------------------h
Confidence            567778999999999999999999999999998865421110                                     0


Q ss_pred             CcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      +....+--|...|.|+.|+.+ .+|++|+.||.|++|.+.+|+|++.|.  |...|+|+.|+. |+..+++++.|.++||
T Consensus       254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI  332 (508)
T ss_pred             hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence            111223347789999999987 599999999999999999999999995  999999999999 9999999999999999


Q ss_pred             EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      --+.+|+++. +.+|...|+.+.|++||..+++++.||+|++|+..+.
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence            9999998876 8999999999999999999999999999999998754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-21  Score=177.27  Aligned_cols=225  Identities=17%  Similarity=0.276  Sum_probs=154.7

Q ss_pred             hhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee-----e--ecCCCCc
Q 012367          195 NKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK-----S--FTDDGGF  267 (465)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~-----~--~~~~~~~  267 (465)
                      +..+..+.+++...|........|++|.+.|++|+|+.||++|||++.|++|+||++........     .  ......+
T Consensus        59 ~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V  138 (420)
T KOG2096|consen   59 KHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV  138 (420)
T ss_pred             cccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE
Confidence            33445555666667777888899999999999999999999999999999999999876321100     0  0000001


Q ss_pred             ccccCCCeEEeccCCCCceeEecCCc----eeeec---CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC
Q 012367          268 GSNAKEGKIKFGKKKSSHVPVVIPDE----VFQIE---ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC  339 (465)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~  339 (465)
                      ........+.++.......++....+    .+...   ...+..-.-|.-.|..+-...++ +++|++.|.+|.||+++ 
T Consensus       139 ~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-  217 (420)
T KOG2096|consen  139 VFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-  217 (420)
T ss_pred             EECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-
Confidence            11111122222222222222211110    00000   01111122466667666665544 89999999999999999 


Q ss_pred             CeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC---CC------eEEecccCCCCeEEEEEeeCCCEEEEE
Q 012367          340 NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------RVVDWADVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       340 ~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~---~~------~~~~~~~~~~~V~sv~~spdg~~l~sg  409 (465)
                      |+.+..+. ....-+..+.+| +|+++++++..--|++|.+-   .|      ++..+.+|...|.++||+|+...+++.
T Consensus       218 Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  218 GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            88888885 334567788999 99999999999999999973   22      344588999999999999999999999


Q ss_pred             EcCCcEEEEEec
Q 012367          410 SITGTCHFYKAS  421 (465)
Q Consensus       410 s~dG~v~iwd~~  421 (465)
                      +.||++++||++
T Consensus       297 SkDG~wriwdtd  308 (420)
T KOG2096|consen  297 SKDGKWRIWDTD  308 (420)
T ss_pred             ecCCcEEEeecc
Confidence            999999999976

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=2.9e-22  Score=182.85  Aligned_cols=217  Identities=21%  Similarity=0.361  Sum_probs=165.5

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +....+..|++++++.+|+|||.++||||.|..|+|.|++..........             +..+..           
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~e-------------m~~~~~-----------  158 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKE-------------MISGDT-----------  158 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhh-------------hccCCc-----------
Confidence            44456778999999999999999999999999999999975322110000             000000           


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEe---EEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCL---NVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l---~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                         ...-..++++..|..+|+++.|+|. ..|++++.|++|+++|.......   +.|....+|.+|.|+| .|.+++.|
T Consensus       159 ---qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvg  234 (430)
T KOG0640|consen  159 ---QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVG  234 (430)
T ss_pred             ---ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEe
Confidence               0011347889999999999999996 58999999999999999765443   4456778999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          369 SIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      ....++|+||+.+-++..    -.+|.+.|++|.|++.|++.++|+.||.|++||--.++-....-..|+     +..|.
T Consensus       235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-----gsevc  309 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-----GSEVC  309 (430)
T ss_pred             cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-----Cceee
Confidence            999999999999877654    456999999999999999999999999999999765543222222333     46777


Q ss_pred             eEEEeecCCc-------cceeeeec
Q 012367          445 GIQGRISKNY-------DNFRRFQT  462 (465)
Q Consensus       445 ~~~f~p~gs~-------d~~~~~~~  462 (465)
                      +..|.-+|.|       ....+|..
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeee
Confidence            7777766555       34666653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=3.1e-21  Score=183.26  Aligned_cols=197  Identities=20%  Similarity=0.330  Sum_probs=168.0

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      +.+.-++.++|.||+..|+.+.|+|+...+++++.|-.|+||.+....                                
T Consensus       247 d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--------------------------------  294 (506)
T KOG0289|consen  247 DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--------------------------------  294 (506)
T ss_pred             ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--------------------------------
Confidence            344556678889999999999999999999999999999999987532                                


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCC---CceEEEEEccCCCC
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDN  363 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~---~~V~~i~fsp~~~~  363 (465)
                                   .......|..+|+.+..+|.| ||++++.|++....|++++.++....+.   -.+++++|+| ||.
T Consensus       295 -------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgL  360 (506)
T KOG0289|consen  295 -------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGL  360 (506)
T ss_pred             -------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-Cce
Confidence                         123345799999999999975 9999999999999999999999888764   2589999999 999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +|.+|..|+.|+|||+..+..+ .+.+|.+.|.+++|+.+|-+|++++.|+.|++||++..+ .+..+.+..+     ..
T Consensus       361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-n~kt~~l~~~-----~~  434 (506)
T KOG0289|consen  361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-NFKTIQLDEK-----KE  434 (506)
T ss_pred             EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-ccceeecccc-----cc
Confidence            9999999999999999887655 488899999999999999999999999999999998655 2334544442     36


Q ss_pred             eeeEEEeecCCccc
Q 012367          443 ITGIQGRISKNYDN  456 (465)
Q Consensus       443 It~~~f~p~gs~d~  456 (465)
                      +.++.|-++|+|-.
T Consensus       435 v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLG  448 (506)
T ss_pred             ceeEEEcCCCCeEE
Confidence            88899999988853

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=1.1e-21  Score=187.56  Aligned_cols=210  Identities=19%  Similarity=0.331  Sum_probs=165.9

Q ss_pred             cchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .+.-.|.||++.=.+|+|++... +|++|+.|++|.+||+........                                
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~--------------------------------  215 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK--------------------------------  215 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc--------------------------------
Confidence            34457889999889999999755 899999999999999986322100                                


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCC--CeEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~--~~~l~~~-~h~~~V~~i~fsp~~~~~l~  366 (465)
                            ...+...+.+|...|.+++|++-  .++++++.|+.+.|||+++  .++.+.. .|...|+|++|+|.++..||
T Consensus       216 ------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilA  289 (422)
T KOG0264|consen  216 ------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILA  289 (422)
T ss_pred             ------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEE
Confidence                  12456778899999999999984  5899999999999999995  3444444 59999999999999999999


Q ss_pred             EEeCCCcEEEEeCCC--CeEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce----------eeeEeeec
Q 012367          367 SGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL----------KLEKVDFH  433 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~--~~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~----------~~~~~~~~  433 (465)
                      |||.|++|++||+|+  ..+..+.+|...|..|.|+|+. ..|++++.||++.+||+..-.-          +.+-+..|
T Consensus       290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H  369 (422)
T KOG0264|consen  290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH  369 (422)
T ss_pred             eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence            999999999999986  4566789999999999999965 5788889999999999973222          22334555


Q ss_pred             CcccccCCceeeEEEeecC-------Cccc-eeeeecC
Q 012367          434 DRKKTSGNKITGIQGRISK-------NYDN-FRRFQTP  463 (465)
Q Consensus       434 ~~~~~~~~~It~~~f~p~g-------s~d~-~~~~~~p  463 (465)
                      +.   +..+|+.+.++|..       .-|| +.+|+.+
T Consensus       370 gG---H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  370 GG---HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cC---cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            53   45679999998884       3355 4666543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6.4e-22  Score=176.27  Aligned_cols=201  Identities=20%  Similarity=0.414  Sum_probs=161.0

Q ss_pred             ccchhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ..+.+.++.|+..|.++.|++. ++.++++|.||+|++|+....                                    
T Consensus        94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------------------------------------  137 (311)
T KOG0277|consen   94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------------------------------------  137 (311)
T ss_pred             CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC------------------------------------
Confidence            3467889999999999999995 557888899999999998642                                    


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCC-CeEeEEecCCCceEEEEEccCCCCEEEE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~-~~~l~~~~h~~~V~~i~fsp~~~~~l~s  367 (465)
                               +.++++.||..-|...+|+|.  +.++++|.|+++++||++. |+.+....|...+.|+.|+..+.+.++|
T Consensus       138 ---------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T  208 (311)
T KOG0277|consen  138 ---------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT  208 (311)
T ss_pred             ---------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence                     457789999999999999984  7999999999999999975 4445533588899999999989999999


Q ss_pred             EeCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          368 GSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      |+.|+.||+||+++-+  +..+.+|.-.|+.|+|+|.. ..|++++.|-+++|||...+.-..+....|.      -.+-
T Consensus       209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht------EFv~  282 (311)
T KOG0277|consen  209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT------EFVC  282 (311)
T ss_pred             cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc------eEEe
Confidence            9999999999998754  33578999999999999954 5889999999999999986665555554444      2344


Q ss_pred             eEEEee-------cCCccceeeeecC
Q 012367          445 GIQGRI-------SKNYDNFRRFQTP  463 (465)
Q Consensus       445 ~~~f~p-------~gs~d~~~~~~~p  463 (465)
                      |+.+++       +-..|....++.|
T Consensus       283 g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  283 GLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccccccCceeeecccccceeeecc
Confidence            554443       2345555544444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=2e-21  Score=195.32  Aligned_cols=221  Identities=22%  Similarity=0.405  Sum_probs=162.3

Q ss_pred             cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee----eeec--CCCCcccccCCCeEEecc
Q 012367          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC----KSFT--DDGGFGSNAKEGKIKFGK  280 (465)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~  280 (465)
                      .++.......++++|.+.||.|+.+||++.++|||.|.+|++||..-.....    ....  ...........-.+.+.+
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            3444555667888999999999999999999999999999999975321100    0000  000000000000111111


Q ss_pred             CCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEE
Q 012367          281 KKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCV  355 (465)
Q Consensus       281 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i  355 (465)
                      .+.-.+.....+  .+|-+. -+-.-.+.||.-+|.||..+|+ .+++|||.|++|++|-+.-|.|-+.| .|.+.|+++
T Consensus       519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV  598 (888)
T ss_pred             CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence            111111111222  223332 2345578899999999999997 48999999999999999999998887 799999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCe-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .|-| ...+|.++|.|+.|+-||-..-. +..+.+|...|++++.+|+|.++++++.|.+|++|......+.++
T Consensus       599 ~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  599 QFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             EEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence            9999 99999999999999999987644 456899999999999999999999999999999999876555443

>PTZ00421 coronin; Provisional

Probab=99.87  E-value=1.1e-20  Score=193.89  Aligned_cols=191  Identities=17%  Similarity=0.265  Sum_probs=147.2

Q ss_pred             chhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +...+.+|...|.+++|+|++ ++||||+.|++|+|||+.++.                                     
T Consensus       117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-------------------------------------  159 (493)
T PTZ00421        117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-------------------------------------  159 (493)
T ss_pred             ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-------------------------------------
Confidence            346788999999999999986 699999999999999998642                                     


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCc-eEEEEEccCCCCEEEEEe
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-VTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~-V~~i~fsp~~~~~l~sgs  369 (465)
                              .+..+.+|...|.+++|+|++ +|++++.|++|++||+++++.+..+. |.+. +..+.|.| ++..+++++
T Consensus       160 --------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G  230 (493)
T PTZ00421        160 --------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLG  230 (493)
T ss_pred             --------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEe
Confidence                    345566899999999999975 89999999999999999999888774 6553 45778888 666666654


Q ss_pred             ----CCCcEEEEeCCCCe-EEecc--cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367          370 ----IDGKVRIWGVCEKR-VVDWA--DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (465)
Q Consensus       370 ----~Dg~I~iwd~~~~~-~~~~~--~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~  441 (465)
                          .|+.|++||+++.. .+...  .....+....|+|+++.|++|+. ||.|++||+.++.+... ..+     ....
T Consensus       231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~-~~~-----~s~~  304 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC-SSY-----SSVE  304 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE-eec-----cCCC
Confidence                47899999998643 33222  23445667789999999998884 99999999998765332 111     1234


Q ss_pred             ceeeEEEeecCCccc
Q 012367          442 KITGIQGRISKNYDN  456 (465)
Q Consensus       442 ~It~~~f~p~gs~d~  456 (465)
                      .+.++.|.|.-..|.
T Consensus       305 ~~~g~~~~pk~~~dv  319 (493)
T PTZ00421        305 PHKGLCMMPKWSLDT  319 (493)
T ss_pred             CCcceEecccccccc
Confidence            677888888755553

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.87  E-value=3.3e-21  Score=179.06  Aligned_cols=223  Identities=17%  Similarity=0.298  Sum_probs=174.4

Q ss_pred             CCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367          189 SEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG  268 (465)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~  268 (465)
                      .+...+..+++|       ++..-+...++.||...|..+++|+-..||.++++|+.|+-||++..+.+..+......+.
T Consensus       167 ~tgs~DrtikIw-------Dlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~  239 (460)
T KOG0285|consen  167 ATGSADRTIKIW-------DLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY  239 (460)
T ss_pred             EecCCCceeEEE-------EcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE
Confidence            344445556666       4555566678889999999999999999999999999999999998777766655544443


Q ss_pred             cccCCCeEEeccCCCCceeEecCCceeeec-CCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367          269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVF  346 (465)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~  346 (465)
                      +......+......+....    ..+|++. ...++.+.||..+|.++.+.| ++.+++||.|++|++||++.|+...++
T Consensus       240 ~L~lhPTldvl~t~grDst----~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl  315 (460)
T KOG0285|consen  240 CLDLHPTLDVLVTGGRDST----IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL  315 (460)
T ss_pred             EEeccccceeEEecCCcce----EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEee
Confidence            3333322221111111111    1345553 457889999999999999987 579999999999999999999887777


Q ss_pred             -cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          347 -DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       347 -~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                       .|...|.|++.+| ..+.|++++.|. |+-|++..+..+. +.+|+..|++++...|| ++++|+.+|.+.+||..++.
T Consensus       316 t~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  316 THHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             ecccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCc
Confidence             5777999999999 999999999875 8999999887665 78899999999999887 88999999999999998764


Q ss_pred             e
Q 012367          425 L  425 (465)
Q Consensus       425 ~  425 (465)
                      -
T Consensus       393 n  393 (460)
T KOG0285|consen  393 N  393 (460)
T ss_pred             c
Confidence            3

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=194.43  Aligned_cols=231  Identities=19%  Similarity=0.356  Sum_probs=176.0

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.||.+.|++++|..-+.+|++|+.|.+++|||+.++.+.+...........................      ..+|
T Consensus       243 ~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~t------VkVW  316 (537)
T KOG0274|consen  243 TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNT------VKVW  316 (537)
T ss_pred             eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCce------EEEE
Confidence            3488999999999998878899999999999999999999988887655544444333333333111111      2345


Q ss_pred             eec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          296 QIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       296 ~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      ++. ...++.+.+|.++|.++..+ .+++++|+.|++|++||+.+++|++.+ +|..+|+++.+.+ . .++++|+.|++
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~  393 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTT  393 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccc
Confidence            554 56677888899999999988 679999999999999999999999999 6999999999865 3 99999999999


Q ss_pred             EEEEeCCCC-eEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe--
Q 012367          374 VRIWGVCEK-RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR--  449 (465)
Q Consensus       374 I~iwd~~~~-~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~--  449 (465)
                      |++||+++. +++ .+.+|...|..+.+  .+++|++++.||+|++||..++..... +...     +...|+.+++.  
T Consensus       394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~-~~~~-----~~~~v~~l~~~~~  465 (537)
T KOG0274|consen  394 IKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRT-LEGR-----HVGGVSALALGKE  465 (537)
T ss_pred             eEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeee-eccC-----CcccEEEeecCcc
Confidence            999999998 555 47778887866555  577999999999999999988766332 2111     22345555442  


Q ss_pred             ---ecCCccceeeeecC
Q 012367          450 ---ISKNYDNFRRFQTP  463 (465)
Q Consensus       450 ---p~gs~d~~~~~~~p  463 (465)
                         ..+...++.+|+.|
T Consensus       466 ~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  466 EILCSSDDGSVKLWDLR  482 (537)
T ss_pred             eEEEEecCCeeEEEecc
Confidence               23444557777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.86  E-value=9.6e-20  Score=172.60  Aligned_cols=224  Identities=22%  Similarity=0.426  Sum_probs=166.5

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PD  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  292 (465)
                      ....+.+|...|..+.|+|++++|++++.||.|++|++.+................      +.+... ........ .+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~------~~~~~~-~~~~~~~~~~~  115 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS------VAFSPD-GRILSSSSRDK  115 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEE------EEEcCC-CCEEEEecCCC
Confidence            34566789999999999999999999999999999999875444333322211111      111111 11111111 11


Q ss_pred             c--eeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEE
Q 012367          293 E--VFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       293 ~--~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~s  367 (465)
                      .  +|++. .++...+..|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+. |...|.+++|+| +++.+++
T Consensus       116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  194 (289)
T cd00200         116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLS  194 (289)
T ss_pred             eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEE
Confidence            1  23333 45566777899999999999965 66666669999999999888888874 677999999999 8889999


Q ss_pred             EeCCCcEEEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          368 GSIDGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      ++.|+.|++||+.+++.+... .|...+.+++|+|++.++++++.+|.+++|++.+++... .+.      .+...|+++
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~------~~~~~i~~~  267 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ-TLS------GHTNSVTSL  267 (289)
T ss_pred             ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE-Ecc------ccCCcEEEE
Confidence            999999999999987777644 788899999999999899988889999999998754432 222      233579999


Q ss_pred             EEeecC
Q 012367          447 QGRISK  452 (465)
Q Consensus       447 ~f~p~g  452 (465)
                      .|+|++
T Consensus       268 ~~~~~~  273 (289)
T cd00200         268 AWSPDG  273 (289)
T ss_pred             EECCCC
Confidence            999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=168.77  Aligned_cols=201  Identities=19%  Similarity=0.318  Sum_probs=157.9

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      +.+..+|.||...|.|++|+++|.||||++.|+.|=||.+.....                                   
T Consensus        95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-----------------------------------  139 (312)
T KOG0645|consen   95 FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-----------------------------------  139 (312)
T ss_pred             eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----------------------------------
Confidence            345688999999999999999999999999999999999885321                                   


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCC---CCeEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVG---CNQCLNVF-DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~---~~~~l~~~-~h~~~V~~i~fsp~~~~~l~  366 (465)
                             ...+..+++|+..|..+.|+|. ++|+|+|.|.+|++|+-.   .-.|..++ +|++.|++++|+| .|..++
T Consensus       140 -------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~  211 (312)
T KOG0645|consen  140 -------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLV  211 (312)
T ss_pred             -------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEE
Confidence                   1345678899999999999996 699999999999999876   23578888 5888999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC-cccccCCceee
Q 012367          367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITG  445 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~It~  445 (465)
                      +++.|++|+||-..+.   -...|...+..++|.  ...|++++.|+.|++|.-...--. ..+.+-. ....+...|.+
T Consensus       212 s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~-p~~~l~~~~~~aHe~dVNs  285 (312)
T KOG0645|consen  212 SCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE-PSWNLLAKKEGAHEVDVNS  285 (312)
T ss_pred             EecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC-chHHHHHhhhcccccccce
Confidence            9999999999986622   123467789999998  448999999999999987742111 1222211 22335578999


Q ss_pred             EEEeec-------CCccc-eeeee
Q 012367          446 IQGRIS-------KNYDN-FRRFQ  461 (465)
Q Consensus       446 ~~f~p~-------gs~d~-~~~~~  461 (465)
                      +++.|.       ++.|. +++|.
T Consensus       286 V~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  286 VQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             EEEcCCCCCceeecCCCceEEEEE
Confidence            999993       45555 45553

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-19  Score=166.51  Aligned_cols=240  Identities=19%  Similarity=0.290  Sum_probs=153.3

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc---cCCCeEEeccCCCCcee
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN---AKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  287 (465)
                      .+.+.+.+..-.+.|++|.|+++|.+|+++++|.+++|||..++................   .....+.......... 
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t-   81 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT-   81 (311)
T ss_pred             ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc-
Confidence            344556676778899999999999999999999999999999988776665543221111   1111111111100000 


Q ss_pred             EecCCceee-ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE
Q 012367          288 VVIPDEVFQ-IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       288 ~~~~~~~~~-~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l  365 (465)
                          -.... ...+.++.+.||...|.+|+.+|. ..++|++.|++|++||++..+|...+..... ..++|.| .|-+|
T Consensus        82 ----IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp-~GLif  155 (311)
T KOG1446|consen   82 ----IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDP-EGLIF  155 (311)
T ss_pred             ----eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECC-CCcEE
Confidence                00111 145778999999999999999995 6999999999999999997666554432211 2344555 55555


Q ss_pred             EEEeCCCcEEEEeC-----------------------------------------------CCCeEEe-cccCCC---Ce
Q 012367          366 ISGSIDGKVRIWGV-----------------------------------------------CEKRVVD-WADVRD---VI  394 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~-----------------------------------------------~~~~~~~-~~~~~~---~V  394 (465)
                      |++.....|++||+                                               -+|.+.. +..+..   .-
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~  235 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP  235 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence            55544445555554                                               4443332 222211   12


Q ss_pred             EEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec----CCccceeeeecC
Q 012367          395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS----KNYDNFRRFQTP  463 (465)
Q Consensus       395 ~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~----gs~d~~~~~~~p  463 (465)
                      -..+|+||++++++|+.||+|++|++++++........      ....++.++|.|-    -+-+....+++|
T Consensus       236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~------~~~~~~~~~fnP~~~mf~sa~s~l~fw~p  302 (311)
T KOG1446|consen  236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP------NGGPVSCVRFNPRYAMFVSASSNLVFWLP  302 (311)
T ss_pred             eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC------CCCCccccccCCceeeeeecCceEEEEec
Confidence            56789999999999999999999999888765432211      2356677777775    233444444444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6e-21  Score=183.87  Aligned_cols=186  Identities=23%  Similarity=0.400  Sum_probs=156.1

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+++.-.+..|.++.|-.||++||.|.+.|.|+|+|+.+.                                       
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---------------------------------------  100 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---------------------------------------  100 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---------------------------------------
Confidence            33445556788999999999999999999999999996541                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                            ..++.+.+|+.+|..+.|+|.+  .+++|+.|+.+++||+.+......+ +|.++|.|.+|+|.++..++|||+
T Consensus       101 ------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY  174 (487)
T KOG0310|consen  101 ------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY  174 (487)
T ss_pred             ------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence                  2367788999999999999853  8889999999999999998875455 699999999999988999999999


Q ss_pred             CCcEEEEeCCCC-eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          371 DGKVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       371 Dg~I~iwd~~~~-~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      ||+||+||++.. ..+....|..+|..+.+-|.|..+++++.. .|++||+.++...+.....      +.+.||++.+.
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~------H~KtVTcL~l~  247 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFN------HNKTVTCLRLA  247 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhc------ccceEEEEEee
Confidence            999999999986 666678899999999999999999998754 8999999966554433222      34789999887


Q ss_pred             ec
Q 012367          450 IS  451 (465)
Q Consensus       450 p~  451 (465)
                      -+
T Consensus       248 s~  249 (487)
T KOG0310|consen  248 SD  249 (487)
T ss_pred             cC
Confidence            64

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.86  E-value=1e-20  Score=169.80  Aligned_cols=235  Identities=16%  Similarity=0.239  Sum_probs=170.6

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc-CCCeEE-eccC-CCCceeEec
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA-KEGKIK-FGKK-KSSHVPVVI  290 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~  290 (465)
                      ..-++.||++.|||+...-+.++|+||+.|.++++||+.++++......+........ ..+.+. +... ........ 
T Consensus        44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v-  122 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFV-  122 (327)
T ss_pred             eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEE-
Confidence            3467889999999999999999999999999999999999988876655443221111 111111 1111 11111100 


Q ss_pred             CCceeee--------cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEcc
Q 012367          291 PDEVFQI--------EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNP  359 (465)
Q Consensus       291 ~~~~~~~--------~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp  359 (465)
                        .++.+        ...|+..+..+...++.+-|.|- ..|++|..||.|.+||++++..+..-  .|...|+.++++|
T Consensus       123 --~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~  200 (327)
T KOG0643|consen  123 --SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR  200 (327)
T ss_pred             --EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC
Confidence              12222        35668888889999999999995 59999999999999999998654443  4888999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE--EecCCceeee--Ee---ee
Q 012367          360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY--KASGNDLKLE--KV---DF  432 (465)
Q Consensus       360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw--d~~~~~~~~~--~~---~~  432 (465)
                       +..+|++||.|.+-++||+.+-.++.......+|++.+++|-...++.|+...---+=  +.+.++..-.  ..   .-
T Consensus       201 -d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE  279 (327)
T KOG0643|consen  201 -DRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE  279 (327)
T ss_pred             -CcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence             9999999999999999999999999888888999999999987777776643322222  2222322211  00   01


Q ss_pred             cCcccccCCceeeEEEeecC
Q 012367          433 HDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       433 ~~~~~~~~~~It~~~f~p~g  452 (465)
                      -++.+.+..+|.+++|+|+|
T Consensus       280 igrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  280 IGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             hccccccccCcceeEECCCC
Confidence            24456688999999999985

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.86  E-value=3.5e-21  Score=181.92  Aligned_cols=244  Identities=15%  Similarity=0.176  Sum_probs=152.4

Q ss_pred             CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367          191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  270 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~  270 (465)
                      ......++.|......     .....+|.|-.++|+.+.|.++++++++++.|+.+++|++...........+...+...
T Consensus       193 gg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  193 GGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA  267 (459)
T ss_pred             cchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence            3445566666543332     33467888999999999999999999999999999999998765443332222111111


Q ss_pred             cCCCeEEeccCCCCceeEec----CCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367          271 AKEGKIKFGKKKSSHVPVVI----PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF  346 (465)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~  346 (465)
                      ....      ....  .+..    ..+.|++.......-.-....+.+|. .....++||-.|++|+.||+++..+....
T Consensus       268 k~~~------~~~~--vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~-~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv  338 (459)
T KOG0288|consen  268 KFKL------SHSR--VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV-CSISDVISGHFDKKVRFWDIRSADKTRSV  338 (459)
T ss_pred             hhhc------cccc--eeeccccchhhhhhhhhhheeccccccccccceE-ecceeeeecccccceEEEeccCCceeeEe
Confidence            0000      0000  0000    00111111100000000001111111 01124556667777777777777777777


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ...+.|+++..++ ++.-+.+++.|.++.+.|+++..+.....     .....+.++|+|++.|+++|+.||.|+||++.
T Consensus       339 ~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  339 PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             ecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            7667888888888 88888888888888888888776654211     22348899999999999999999999999999


Q ss_pred             CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ++++... .....    +...|+++.|+|.|++
T Consensus       418 tgKlE~~-l~~s~----s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  418 TGKLEKV-LSLST----SNAAITSLSWNPSGSG  445 (459)
T ss_pred             CceEEEE-eccCC----CCcceEEEEEcCCCch
Confidence            9988543 11111    2237999999999877

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=9.8e-21  Score=173.35  Aligned_cols=216  Identities=17%  Similarity=0.301  Sum_probs=160.0

Q ss_pred             cccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc---ccccCCCeEEeccCCCCc
Q 012367          209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---GSNAKEGKIKFGKKKSSH  285 (465)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  285 (465)
                      +..-.|..++.||.|.|++|+|++.+.+++|++.|++-+||...-.-.......+..+.   .....+.......     
T Consensus       177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d-----  251 (481)
T KOG0300|consen  177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD-----  251 (481)
T ss_pred             eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc-----
Confidence            44556778899999999999999999999999999999999842111000000000000   0000000000000     


Q ss_pred             eeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~  363 (465)
                      .........   -..|+..+.||.+.|.+..|-.+ ..++++|.|.+..+||++++..+..+ +|....+.++-+| ..+
T Consensus       252 ~~~~sD~~t---iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQr  327 (481)
T KOG0300|consen  252 SSEKSDGHT---IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQR  327 (481)
T ss_pred             cccccCCce---eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cce
Confidence            000000000   12478889999999999999875 48999999999999999999999998 6888999999999 999


Q ss_pred             EEEEEeCCCcEEEEeCCCC--eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          364 YFISGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      ++++.+.|.+.|+||++..  .+..+.+|.+.|+++.|.-+. .+++|+.|.+|++||+++..-++..+....
T Consensus       328 LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  328 LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCC
Confidence            9999999999999999853  344589999999999999765 689999999999999998887777665443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.86  E-value=1.4e-21  Score=179.28  Aligned_cols=218  Identities=22%  Similarity=0.363  Sum_probs=166.9

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccc-cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFT-ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS  260 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~  260 (465)
                      +++.....+...++-+.+|.+......-. ..+....+--|..+|.|+.||.|..+||||+.||.|+||.+.++.+    
T Consensus       222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C----  297 (508)
T KOG0275|consen  222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC----  297 (508)
T ss_pred             CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH----
Confidence            33333334445566667776543322111 1112233556899999999999999999999999999999998654    


Q ss_pred             ecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCC
Q 012367          261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG  338 (465)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~  338 (465)
                                                               ++.|. +|+..|+|+.|+.++ .+++++.|.+|++.-+.
T Consensus       298 -----------------------------------------lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  298 -----------------------------------------LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             -----------------------------------------HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence                                                     44444 799999999999875 89999999999999999


Q ss_pred             CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c-----------------------------
Q 012367          339 CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-----------------------------  387 (465)
Q Consensus       339 ~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~-----------------------------  387 (465)
                      +|++++.| +|+.+|+.+.|.+ +|.++++++.||+|++|+..+..++. +                             
T Consensus       337 SGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  337 SGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             cchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            99999999 6999999999999 99999999999999999987643211 0                             


Q ss_pred             -------c---------c--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          388 -------A---------D--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       388 -------~---------~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                             .         +  ..+...+.+.+|.|.++.+.+.|+.++.|.+.++++.. .+..|.      +-+.|+...
T Consensus       416 tv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-tl~VhE------kdvIGl~HH  488 (508)
T KOG0275|consen  416 TVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-TLPVHE------KDVIGLTHH  488 (508)
T ss_pred             eEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-eeeccc------ccccccccC
Confidence                   0         0  11224456789999999999999999999999988754 444555      467788877


Q ss_pred             ecC
Q 012367          450 ISK  452 (465)
Q Consensus       450 p~g  452 (465)
                      |..
T Consensus       489 PHq  491 (508)
T KOG0275|consen  489 PHQ  491 (508)
T ss_pred             ccc
Confidence            764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.86  E-value=2.8e-21  Score=185.91  Aligned_cols=186  Identities=18%  Similarity=0.313  Sum_probs=152.2

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      -.+.+++.||..+|..++|+++|..++|+|.|++|++||++++.+.....                              
T Consensus       248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~------------------------------  297 (503)
T KOG0282|consen  248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH------------------------------  297 (503)
T ss_pred             cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe------------------------------
Confidence            56779999999999999999999999999999999999999987653321                              


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sg  368 (465)
                                      -...+.|+.|+|++  .+++|+.|+.|+.||+++++.++.+. |-+.|..|.|-+ ++++|++.
T Consensus       298 ----------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFiss  360 (503)
T KOG0282|consen  298 ----------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISS  360 (503)
T ss_pred             ----------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeee
Confidence                            12456789999864  89999999999999999999999984 778999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEe-----------------------------------------------cccC--CCCeEEEEE
Q 012367          369 SIDGKVRIWGVCEKRVVD-----------------------------------------------WADV--RDVISAICY  399 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~-----------------------------------------------~~~~--~~~V~sv~~  399 (465)
                      +.|+.++||+.+..-.+.                                               +.+|  .+.-..+.|
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            999999999986532110                                               1112  123456899


Q ss_pred             eeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          400 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       400 spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      +|||.+|++|+.||.|.+||..+.++. ..+      +.+...++++.|.|.
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~-~~l------kah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLV-SKL------KAHDQPCIGVDWHPV  485 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhh-hcc------ccCCcceEEEEecCC
Confidence            999999999999999999999887652 222      233468899988886

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=2e-20  Score=195.55  Aligned_cols=203  Identities=26%  Similarity=0.440  Sum_probs=157.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      -++..|.++|+|+.|+|||+|||+||+|+.|.||..... .....+..                           .++.-
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs---------------------------~g~~~  114 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGS---------------------------TGGAK  114 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccc---------------------------ccccc
Confidence            345689999999999999999999999999999998741 11000000                           00000


Q ss_pred             ee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          296 QI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       296 ~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                      .. ..+.+..+.+|.+.|.+++|+|++ +|++++.|++|.||+..+..+++.+ +|...|..+.|.| -|+||++-+.|+
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDr  193 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDR  193 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCc
Confidence            00 124677889999999999999975 9999999999999999999999998 5999999999999 999999999999


Q ss_pred             cEEEEeCCCCe-----------------------------------------------------EEecccCCCCeEEEEE
Q 012367          373 KVRIWGVCEKR-----------------------------------------------------VVDWADVRDVISAICY  399 (465)
Q Consensus       373 ~I~iwd~~~~~-----------------------------------------------------~~~~~~~~~~V~sv~~  399 (465)
                      +|+||.+.+-.                                                     -..+.+|..++.++.|
T Consensus       194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF  273 (942)
T KOG0973|consen  194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF  273 (942)
T ss_pred             eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence            99999863300                                                     1135789999999999


Q ss_pred             eeC-----CC------------EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          400 IPD-----GK------------GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       400 spd-----g~------------~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +|.     .+            .+|+|+.|++|.||.....+.-+....+-      ...|.+++|+|+|.
T Consensus       274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf------~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF------NKSIVDMSWSPDGF  338 (942)
T ss_pred             ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh------cCceeeeeEcCCCC
Confidence            982     12            68899999999999985443322222222      36899999999973

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=4.6e-20  Score=168.22  Aligned_cols=199  Identities=25%  Similarity=0.418  Sum_probs=150.9

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .-.+.|.+|+||| ...+++.||.||+||+|++......                                         
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-----------------------------------------   63 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-----------------------------------------   63 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcc-----------------------------------------
Confidence            4578899999999 4557779999999999999862110                                         


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC--EEEEEeCCCcEE
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR  375 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~--~l~sgs~Dg~I~  375 (465)
                       .+ +....|.++|.+++|+.++ .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ...  .|+|||.|.+|+
T Consensus        64 -~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   64 -VP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             -cc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence             01 3344689999999999886 89999999999999999998877778999999999987 555  899999999999


Q ss_pred             EEeCCCCeEEecc------------------------------------------cCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367          376 IWGVCEKRVVDWA------------------------------------------DVRDVISAICYIPDGKGFIVGSITG  413 (465)
Q Consensus       376 iwd~~~~~~~~~~------------------------------------------~~~~~V~sv~~spdg~~l~sgs~dG  413 (465)
                      .||.+....+...                                          ...-.+++|+..+|....+.|+..|
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG  220 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG  220 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence            9999865422110                                          0123378899999999999999999


Q ss_pred             cEEEEEecCCceeee-EeeecCcc--ccc-CCceeeEEEeec-------CCccceeeeec
Q 012367          414 TCHFYKASGNDLKLE-KVDFHDRK--KTS-GNKITGIQGRIS-------KNYDNFRRFQT  462 (465)
Q Consensus       414 ~v~iwd~~~~~~~~~-~~~~~~~~--~~~-~~~It~~~f~p~-------gs~d~~~~~~~  462 (465)
                      .|-+..+........ .+.-|...  ... ...|.++.|+|.       |++.++.+|+.
T Consensus       221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecc
Confidence            999999987543221 33323211  112 456788899885       66667777763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-20  Score=179.37  Aligned_cols=184  Identities=21%  Similarity=0.350  Sum_probs=156.0

Q ss_pred             cccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCC
Q 012367          205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (465)
Q Consensus       205 ~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (465)
                      ...+++.-.+...+.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+......                           
T Consensus       106 YlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a---------------------------  158 (476)
T KOG0646|consen  106 YLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA---------------------------  158 (476)
T ss_pred             EEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc---------------------------
Confidence            34466677777888999999999999999999999999999999998642110                           


Q ss_pred             ceeEecCCceeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCC
Q 012367          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID  361 (465)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~  361 (465)
                             ....  ..+|++.+..|+-+|+++...++   ..|+|+|.|.++++||+..+..+..+.....+.+++..| .
T Consensus       159 -------~~~~--~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-a  228 (476)
T KOG0646|consen  159 -------DNDH--SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-A  228 (476)
T ss_pred             -------ccCC--CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-c
Confidence                   0000  24689999999999999999865   499999999999999999999999999999999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC-----------------eEEecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          362 DNYFISGSIDGKVRIWGVCEK-----------------RVVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~-----------------~~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ++.++.|+.+|.|.+.++..-                 +...+.+|.+  .|+|++++-||..|++|+.||.|+|||+.+
T Consensus       229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            999999999999999887321                 1223677887  999999999999999999999999999976


Q ss_pred             Cce
Q 012367          423 NDL  425 (465)
Q Consensus       423 ~~~  425 (465)
                      .+.
T Consensus       309 ~Q~  311 (476)
T KOG0646|consen  309 KQC  311 (476)
T ss_pred             HHH
Confidence            543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=2e-20  Score=167.44  Aligned_cols=163  Identities=23%  Similarity=0.426  Sum_probs=140.3

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      +.+++|.+.|.+|+|+.+|..||+|+.|+++++|++.....                                       
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------------------------   54 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------------------------   54 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence            67889999999999999999999999999999999986311                                       


Q ss_pred             eecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                          ..-....+|.+.|-.++|+|.  ..+++++.|++|++||+++++|.........-.-+.|+| ++.+++.|+.|..
T Consensus        55 ----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~  129 (313)
T KOG1407|consen   55 ----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR  129 (313)
T ss_pred             ----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence                112235689999999999974  589999999999999999999999997777667789999 9999999999999


Q ss_pred             EEEEeCCCCe------------------------------------------EEecccCCCCeEEEEEeeCCCEEEEEEc
Q 012367          374 VRIWGVCEKR------------------------------------------VVDWADVRDVISAICYIPDGKGFIVGSI  411 (465)
Q Consensus       374 I~iwd~~~~~------------------------------------------~~~~~~~~~~V~sv~~spdg~~l~sgs~  411 (465)
                      |.+.|.++.+                                          +..+..|.....||.|+|+|++|++|+.
T Consensus       130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA  209 (313)
T KOG1407|consen  130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA  209 (313)
T ss_pred             EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc
Confidence            9999886532                                          1124567778889999999999999999


Q ss_pred             CCcEEEEEecC
Q 012367          412 TGTCHFYKASG  422 (465)
Q Consensus       412 dG~v~iwd~~~  422 (465)
                      |..|.+||+..
T Consensus       210 DAlvSLWD~~E  220 (313)
T KOG1407|consen  210 DALVSLWDVDE  220 (313)
T ss_pred             cceeeccChhH
Confidence            99999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.85  E-value=1.3e-19  Score=199.01  Aligned_cols=200  Identities=22%  Similarity=0.408  Sum_probs=148.2

Q ss_pred             cchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-
Q 012367          213 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-  290 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  290 (465)
                      .....+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++......... ..+.      .+.+............ 
T Consensus       566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~------~v~~~~~~g~~latgs~  638 (793)
T PLN00181        566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC------CVQFPSESGRSLAFGSA  638 (793)
T ss_pred             eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE------EEEEeCCCCCEEEEEeC
Confidence            34456789999999999997 7889999999999999999887655443221 1111      1111111111111111 


Q ss_pred             CC--ceeeecC--CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCC------eEeEEe-cCCCceEEEEEcc
Q 012367          291 PD--EVFQIEE--SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN------QCLNVF-DHHNYVTCVQFNP  359 (465)
Q Consensus       291 ~~--~~~~~~~--~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~------~~l~~~-~h~~~V~~i~fsp  359 (465)
                      .+  .+|++..  .++..+.+|...|.++.|.++.+|++++.|++|++||+..+      .++..+ +|...+.+++|+|
T Consensus       639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~  718 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV  718 (793)
T ss_pred             CCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence            11  2333332  25677889999999999987789999999999999999743      566777 5888999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEe--------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          360 IDDNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~--------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                       ++.+|++|+.|+.|++|+......+.              ...+...|.+++|+|++..|++|+.+|.|+||++
T Consensus       719 -~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        719 -SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             -CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             89999999999999999986543221              1234567999999999999999999999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=8.8e-20  Score=165.73  Aligned_cols=214  Identities=22%  Similarity=0.347  Sum_probs=166.0

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ..|.|.|+++...+ .|+|+++|+.||.|.+||+++.........       ......+                     
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-------i~k~~c~---------------------   91 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-------IAKHKCI---------------------   91 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-------eeheeee---------------------
Confidence            46999999999988 588999999999999999986321100000       0000000                     


Q ss_pred             cCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCC--CEEEEEeCCCc
Q 012367          298 EESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFISGSIDGK  373 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~--~~l~sgs~Dg~  373 (465)
                        -....-.+|.-.|.++.|-|  .|++.++|.|.+++|||+.+-+..-.|...+.|++-+++|...  .++++|..|-.
T Consensus        92 --v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   92 --VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             --ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence              01123347999999999998  4799999999999999999999999999999999999999543  46778888889


Q ss_pred             EEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCE-EEEEEcCCcEEEEEecCCceeeeEeeecCcccc--------cCCce
Q 012367          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT--------SGNKI  443 (465)
Q Consensus       374 I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~-l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~--------~~~~I  443 (465)
                      |++-|+.+|.... +.+|.+.|.+|.|+|...+ |++|+.||.|++||++...-.+..++.|+.++.        +..++
T Consensus       170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence            9999999998765 8899999999999997764 788999999999999866445555665553332        44678


Q ss_pred             eeEEEeecC-------Cccceeeeec
Q 012367          444 TGIQGRISK-------NYDNFRRFQT  462 (465)
Q Consensus       444 t~~~f~p~g-------s~d~~~~~~~  462 (465)
                      .|++|..+|       ..+.+++|..
T Consensus       250 ngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  250 NGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eeeeecccchhhhhccCccceEEeec
Confidence            899998875       4466888874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.7e-20  Score=190.22  Aligned_cols=198  Identities=21%  Similarity=0.331  Sum_probs=155.8

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      -.+.+.+.||.+.|..|.||.++ +|+|+|.|.|||+|++....+                                   
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C-----------------------------------  402 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC-----------------------------------  402 (712)
T ss_pred             ccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce-----------------------------------
Confidence            45678999999999999999876 899999999999999986433                                   


Q ss_pred             CceeeecCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                                ++.| .|..-|+|++|+|  ++++++|+-|+.||||++...+.+.-......|++++|.| +|++.+.|+
T Consensus       403 ----------L~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt  470 (712)
T KOG0283|consen  403 ----------LKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGT  470 (712)
T ss_pred             ----------eeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEecc-CCceEEEEE
Confidence                      3334 4999999999998  4799999999999999999988888888889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEec---cc------CCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc
Q 012367          370 IDGKVRIWGVCEKRVVDW---AD------VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~---~~------~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~  439 (465)
                      .+|.+++|+....+++..   ..      ....|+.+.|.|.. ..+++.+.|..|||||.++..+...--.+++     
T Consensus       471 ~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-----  545 (712)
T KOG0283|consen  471 FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-----  545 (712)
T ss_pred             eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-----
Confidence            999999999988776531   11      12379999999844 4688889999999999977665332111221     


Q ss_pred             CCceeeEEEeecCCc------c-ceeeeec
Q 012367          440 GNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       440 ~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ...-+..+|+.+|.|      | .+.+|..
T Consensus       546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  546 TSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            122344556666555      3 3667764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1e-19  Score=181.46  Aligned_cols=230  Identities=19%  Similarity=0.289  Sum_probs=172.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      +...|+++.|+++|.+||.|..+|.|.|||+.+......... ....+.+......+.........+....    .....
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~d----vR~~~  291 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHD----VRISQ  291 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEE----Eecch
Confidence            388999999999999999999999999999988766655544 3333333333322222222211111110    01111


Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe--CCCcEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGKVR  375 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs--~Dg~I~  375 (465)
                      .....+.+|...|..++|++++ ++++|+.|..|.|||.....++..+ .|...|.+++|+|....+||+|+  .|+.|+
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~  371 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK  371 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence            2222478999999999999985 9999999999999999777776666 79999999999999999999975  599999


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEE--EcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sg--s~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +||..++..+........|.+|.|++..+-|+++  ..++.|.||+..+.++. ..+..      |..+|-.++.+|+|.
T Consensus       372 fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-~~l~g------H~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  372 FWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-AELLG------HTSRVLYLALSPDGE  444 (484)
T ss_pred             EEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee-eeecC------CcceeEEEEECCCCC
Confidence            9999999999988899999999999998777664  45789999999884432 12222      447899999999954


Q ss_pred             c-------cceeeee
Q 012367          454 Y-------DNFRRFQ  461 (465)
Q Consensus       454 ~-------d~~~~~~  461 (465)
                      +       .++++|.
T Consensus       445 ~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  445 TIVTGAADETLRFWN  459 (484)
T ss_pred             EEEEecccCcEEecc
Confidence            4       4567765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.85  E-value=4.3e-21  Score=177.59  Aligned_cols=192  Identities=23%  Similarity=0.415  Sum_probs=159.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ....|.|+.+  |...+++|..|++|+|||..+..+........+.+.+......+.+.........++..+     .+.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~-----tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVN-----TGE  268 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEecc-----CCc
Confidence            4567999998  455899999999999999999888777777777777666666666665555555444333     357


Q ss_pred             cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe---EEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l---~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      ++.++-+|...|..+.|++ |+++|+|.|.++.+||+.+...+   +++ +|-..|+.+.|   +.+|++++|.|++|++
T Consensus       269 ~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV  344 (499)
T ss_pred             hhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEE
Confidence            8899999999999999975 79999999999999999876532   233 69999999999   5679999999999999


Q ss_pred             EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      |++.++..+. +.+|...|-|+.|.  |+++++|+.|.+|++||+..+..
T Consensus       345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~c  392 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC  392 (499)
T ss_pred             Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHH
Confidence            9999999886 78899999888884  88999999999999999997765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=9.9e-20  Score=166.91  Aligned_cols=195  Identities=24%  Similarity=0.374  Sum_probs=148.5

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      .+...+++|.++|++++.  +|.|+||||.|-+|+|||+...                                      
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~--------------------------------------   73 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR--------------------------------------   73 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch--------------------------------------
Confidence            334567899999999999  5889999999999999999863                                      


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                             ..+..+..|.+.|+++.|.+.-   .|++|+.||.|.+|++..-.++..+ .|.+.|+.++.+| .+++.++.
T Consensus        74 -------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsV  145 (362)
T KOG0294|consen   74 -------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSV  145 (362)
T ss_pred             -------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEE
Confidence                   3345566799999999998753   8999999999999999999999999 4889999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee---------------------------------------CCCEEEEE
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---------------------------------------DGKGFIVG  409 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp---------------------------------------dg~~l~sg  409 (465)
                      +.|+.++.||+-.++...........+.|.|+|                                       ++..|++|
T Consensus       146 g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG  225 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVG  225 (362)
T ss_pred             cCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEe
Confidence            999999999997765333222222222233333                                       34467888


Q ss_pred             EcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec---------CCccceeeeec
Q 012367          410 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS---------KNYDNFRRFQT  462 (465)
Q Consensus       410 s~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~---------gs~d~~~~~~~  462 (465)
                      ..|+.|.+||.+. ..++..+..|.      ++|.++.+.-+         ++...+++|+.
T Consensus       226 ~d~~~i~~~D~ds-~~~~~~~~AH~------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  226 GDNEWISLKDTDS-DTPLTEFLAHE------NRVKDIASYTNPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             cCCceEEEeccCC-Cccceeeecch------hheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence            8899999999887 34444555555      45666653322         44445777775

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.84  E-value=1.9e-19  Score=167.90  Aligned_cols=164  Identities=21%  Similarity=0.392  Sum_probs=148.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ++|..|+++|.+++.+|+.+++||||.|..-.+|++.++.                                        
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----------------------------------------   97 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----------------------------------------   97 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----------------------------------------
Confidence            6788999999999999999999999999999999998753                                        


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                           ....+.+|...|+++.|+.++ +|+||..+|.|+||+..++.....+. .-..+.=+.|+| .+.+|+.|+.||.
T Consensus        98 -----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGs  171 (399)
T KOG0296|consen   98 -----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGS  171 (399)
T ss_pred             -----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCc
Confidence                 355677999999999999875 99999999999999999999888874 555677789999 9999999999999


Q ss_pred             EEEEeCCC-CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          374 VRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       374 I~iwd~~~-~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      |-+|.+.+ +.+..+.+|...+++-.|.|+|+.+++|..||+|++|++.++..
T Consensus       172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence            99999998 44555889999999999999999999999999999999998854

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.84  E-value=3.3e-20  Score=164.95  Aligned_cols=191  Identities=19%  Similarity=0.349  Sum_probs=166.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .|+.-|.+++|+.|.++|+||+.+..+||+|++..                                            .
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--------------------------------------------~  133 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--------------------------------------------K  133 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCC--------------------------------------------C
Confidence            68899999999999999999999999999999863                                            2


Q ss_pred             CcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          300 SPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      .|..++.+|++.|..+-|.. +..++|++.|++||+||.+++..++.+..+.+|+++.+++ +++++.++ ..+.|.+||
T Consensus       134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwd  211 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWD  211 (334)
T ss_pred             CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEec
Confidence            46677889999999999975 6789999999999999999999999999999999999999 88876655 578899999


Q ss_pred             CCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC------
Q 012367          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK------  452 (465)
Q Consensus       379 ~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g------  452 (465)
                      ..+-.++........|.+.+.+|+...+++|+.|+.++.||..++.-.-.    +  .+.+..+|..+.|+|+|      
T Consensus       212 aksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~----~--nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  212 AKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS----Y--NKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             cccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee----c--ccCCCCceEEEEECCCCceeecc
Confidence            99998888888889999999999999999999999999999998754322    1  23466899999999984      


Q ss_pred             Ccc-ceeeeec
Q 012367          453 NYD-NFRRFQT  462 (465)
Q Consensus       453 s~d-~~~~~~~  462 (465)
                      +.| ++|+|++
T Consensus       286 SEDGTirlWQt  296 (334)
T KOG0278|consen  286 SEDGTIRLWQT  296 (334)
T ss_pred             CCCceEEEEEe
Confidence            445 5899985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=1e-19  Score=174.18  Aligned_cols=220  Identities=24%  Similarity=0.382  Sum_probs=162.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec--CCceee
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI--PDEVFQ  296 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  296 (465)
                      .+|...|.+++.|+||+|||||+.|..|.||+..+.+...........+.      .+.+............  ...+|.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~------~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS------SLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee------eeeeecCccceeeeecCCceEEEe
Confidence            38999999999999999999999999999999998766544222222211      1112111111111111  123444


Q ss_pred             ec-CCcceeeeccccceEEEEecCCCEEEEE-eCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          297 IE-ESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       297 ~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~-s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                      +. ...+.++.||.+.|.+|....-..++|. +.|+++++|++.....+....+.+.+-|++|-  +...|++||.+|.|
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~I  350 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSI  350 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceE
Confidence            43 3456788999999999988766555554 59999999999666555555788899999997  57889999999999


Q ss_pred             EEEeCCCCeEEec--cc-----------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee---EeeecCcccc
Q 012367          375 RIWGVCEKRVVDW--AD-----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE---KVDFHDRKKT  438 (465)
Q Consensus       375 ~iwd~~~~~~~~~--~~-----------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~---~~~~~~~~~~  438 (465)
                      .+|++...+++..  ..           ++.+|++++..|...++++|+.+|+|++|-+..+-.++.   .+.+.     
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~-----  425 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV-----  425 (479)
T ss_pred             EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc-----
Confidence            9999988776531  11           223899999999999999999999999999999844433   33333     


Q ss_pred             cCCceeeEEEeecCC
Q 012367          439 SGNKITGIQGRISKN  453 (465)
Q Consensus       439 ~~~~It~~~f~p~gs  453 (465)
                        ..|++++|+++|.
T Consensus       426 --GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  426 --GFVNSLAFSNSGK  438 (479)
T ss_pred             --cEEEEEEEccCCC
Confidence              5799999999987

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.84  E-value=1.5e-19  Score=160.89  Aligned_cols=164  Identities=21%  Similarity=0.383  Sum_probs=146.9

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ..++.+|++.|..+-|....+.++|++.|++||+||..++...                                     
T Consensus       136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v-------------------------------------  178 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV-------------------------------------  178 (334)
T ss_pred             chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE-------------------------------------
Confidence            3678899999999999999999999999999999999986443                                     


Q ss_pred             eeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                              +++. .+.+|+++.++++|.+++-...+.|+.||..+-..++.+.....|.+...+| +..++++|+.|..+
T Consensus       179 --------~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~  248 (334)
T KOG0278|consen  179 --------QSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKV  248 (334)
T ss_pred             --------EEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEE
Confidence                    2222 3468899999999999999999999999999999999999999999999999 88999999999999


Q ss_pred             EEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          375 RIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       375 ~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.||..++.-+..  .+|.++|.||.|+|||...++|+.||+|++|.+..++.
T Consensus       249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            9999999876653  78999999999999999999999999999999876554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.8e-20  Score=162.17  Aligned_cols=180  Identities=18%  Similarity=0.343  Sum_probs=153.7

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA  271 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  271 (465)
                      .....++.|...+.       .+.+++.+|...|..++.+.|...+|+||.|..|.+||+.++                 
T Consensus        36 GsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-----------------   91 (307)
T KOG0316|consen   36 GSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-----------------   91 (307)
T ss_pred             CCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC-----------------
Confidence            34455556644333       456889999999999999999999999999999999999986                 


Q ss_pred             CCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eEeEEec-
Q 012367          272 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN--QCLNVFD-  347 (465)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~--~~l~~~~-  347 (465)
                                                  +.++.+.||.+.|+.++|+.+ ..+++|+.|.++++||-++.  ++++.+. 
T Consensus        92 ----------------------------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde  143 (307)
T KOG0316|consen   92 ----------------------------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE  143 (307)
T ss_pred             ----------------------------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh
Confidence                                        447788899999999999975 58999999999999999764  5677774 


Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ..+.|.+|..   .+..|++||.||++|.||++.|++.. .....+|++++|++||+..++++.|+++++.|-.++++..
T Consensus       144 a~D~V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~  219 (307)
T KOG0316|consen  144 AKDGVSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK  219 (307)
T ss_pred             hcCceeEEEe---cccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence            6778999998   56889999999999999999998754 3345689999999999999999999999999999988743

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=8.2e-20  Score=170.92  Aligned_cols=210  Identities=24%  Similarity=0.365  Sum_probs=166.2

Q ss_pred             ccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          219 QAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      -+|.+.|+.+..++-|+  +.|+-++.|.|+||++........   ....                          .+-.
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~---~~~~--------------------------~~~~  198 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS---EPGL--------------------------EVKD  198 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc---Cccc--------------------------cccc
Confidence            48999999999988765  778889999999999875211000   0000                          0001


Q ss_pred             ecCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEe----EEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          297 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCL----NVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l----~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      ....|+.++.+|.+.=..|+|+|  .|.|+||..-+.|++|...++.-.    ....|...|..++|+|.....|+|||.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            23578999999999999999998  478999999999999999886421    112599999999999999999999999


Q ss_pred             CCcEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee--eeEeeecCcccccCCceee
Q 012367          371 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       371 Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~It~  445 (465)
                      ||+|+|||++.+   ..+....|...|+.|.|+.+-.+|++|+.||+++|||++.-+..  +.++.+|.      .+||+
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk------~pIts  352 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK------APITS  352 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc------CCeeE
Confidence            999999999987   45667889999999999998889999999999999999865543  33555555      78999


Q ss_pred             EEEeec--------CCccceeeeecC
Q 012367          446 IQGRIS--------KNYDNFRRFQTP  463 (465)
Q Consensus       446 ~~f~p~--------gs~d~~~~~~~p  463 (465)
                      +.|+|.        |..+.+.+|+..
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEee
Confidence            999975        566678888753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.83  E-value=1.1e-19  Score=173.98  Aligned_cols=202  Identities=20%  Similarity=0.345  Sum_probs=162.4

Q ss_pred             cCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      -|.+.|+.+.+.|+.. .+||++..+.|.|||............                                   +
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----------------------------------~  166 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----------------------------------E  166 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----------------------------------c
Confidence            6999999999999765 788889999999999876321110000                                   1


Q ss_pred             CCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCe-------EeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          299 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~-------~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                      ..|...+.||...-.+|+|++.  +.|++++.|++|++||+....       ....| .|...|..++|+|.+..+|+++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence            2456678899998889999974  699999999999999996543       23334 5999999999999999999999


Q ss_pred             eCCCcEEEEeCCC--CeEE-ecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          369 SIDGKVRIWGVCE--KRVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       369 s~Dg~I~iwd~~~--~~~~-~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      +.|+.+.|||+++  .+.. ...+|...|++++|+| ++..||+|+.|++|.+||++.-+.++..+..|.      ..|.
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~------dev~  320 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE------DEVF  320 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC------cceE
Confidence            9999999999995  3333 2667999999999999 567889999999999999998888766665555      6899


Q ss_pred             eEEEeec--------CCccceeeeec
Q 012367          445 GIQGRIS--------KNYDNFRRFQT  462 (465)
Q Consensus       445 ~~~f~p~--------gs~d~~~~~~~  462 (465)
                      .++|+|.        |....+.+|+.
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEec
Confidence            9999997        55556788875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=4e-20  Score=174.64  Aligned_cols=238  Identities=19%  Similarity=0.262  Sum_probs=162.9

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF  261 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~  261 (465)
                      +...+..++..+.....+|+--    ....+...+++.+|..+|..+.||||.+||++++.|..+.+||+.++.....+.
T Consensus       233 S~nGkyLAsaSkD~Taiiw~v~----~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  233 SHNGKYLASASKDSTAIIWIVV----YDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             cCCCeeEeeccCCceEEEEEEe----cCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence            5555555555555555555322    223366678999999999999999999999999999999999999877655444


Q ss_pred             cCCCC-------------cccccCCCeEEeccCCCCceeEe-------------cCCc-------------eeeecCCcc
Q 012367          262 TDDGG-------------FGSNAKEGKIKFGKKKSSHVPVV-------------IPDE-------------VFQIEESPL  302 (465)
Q Consensus       262 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-------------~~~~~~~~~  302 (465)
                      ...+.             +.....+..+..+...+.....+             .++.             ++..+....
T Consensus       309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d  388 (519)
T KOG0293|consen  309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD  388 (519)
T ss_pred             cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence            33111             11111111111111111100000             0010             011111111


Q ss_pred             eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cC--CCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      ..+..-..+|+++..+.++ ++++.-.+..+.+||+.....++.+ +|  ..++..-||.-.+..++++||.|++|+||+
T Consensus       389 r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh  468 (519)
T KOG0293|consen  389 RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH  468 (519)
T ss_pred             hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence            1123345788999999876 6777888999999999977777766 44  447888889886779999999999999999


Q ss_pred             CCCCeEEe-cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCC
Q 012367          379 VCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       379 ~~~~~~~~-~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      ..+++++. +.+|...|++|+|+| +..++|+|+.||+|+||-....
T Consensus       469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99988775 899999999999999 4568999999999999987654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1e-20  Score=189.63  Aligned_cols=183  Identities=19%  Similarity=0.420  Sum_probs=160.1

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .|.+|.++|-+|.|++...+|++|+.||+|++||+.+.                                          
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA------------------------------------------  102 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA------------------------------------------  102 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh------------------------------------------
Confidence            37899999999999999999999999999999999863                                          


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                         +.++++.||...+.++.|+|-+ +.++++.|+.+++||++...|...++ |...|.++.|+| +|+++++|+.|.++
T Consensus       103 ---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  103 ---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTV  178 (825)
T ss_pred             ---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCccee
Confidence               4577888999999999999976 78899999999999999888999995 888999999999 99999999999999


Q ss_pred             EEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          375 RIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       375 ~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +|||+..|++.. +..|...+.++.|+|..-.++.|+.|+++++||+++-.+..       ..+.....|.+..|.|++
T Consensus       179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~-------s~~~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS-------SGKPETDGVRSLAFNPDG  250 (825)
T ss_pred             eeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee-------ccCCccCCceeeeecCCc
Confidence            999999999886 77799999999999999999999999999999997533311       111124567778888775

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=6e-19  Score=182.39  Aligned_cols=125  Identities=21%  Similarity=0.399  Sum_probs=106.8

Q ss_pred             cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCe--------EeEEe-cCCCceEEEEEccCCCC-EEEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFISG  368 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~--------~l~~~-~h~~~V~~i~fsp~~~~-~l~sg  368 (465)
                      ++..+.+|.+.|.+++|+|.  .+|+||+.|++|+|||+.++.        ++..+ .|...|.+++|+| ++. +++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg  144 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS  144 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence            46677899999999999985  599999999999999997642        23344 5889999999999 555 56799


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +.|++|+|||+++++.+....+...|.+++|+|+|..|++++.|+.|+|||++++...
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            9999999999999876654456788999999999999999999999999999987654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=7.8e-20  Score=186.54  Aligned_cols=160  Identities=19%  Similarity=0.423  Sum_probs=146.7

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +..-+..|..++|||...+++++-..|+|++||..-+                                           
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-------------------------------------------   41 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-------------------------------------------   41 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhh-------------------------------------------
Confidence            3345667899999999999999999999999998742                                           


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                        ..+..|..|.++|..++|+|.+ +++||+.|..|+||+..+.+|+.++ +|-++|..+.|++ .-.+++|+|.|.+||
T Consensus        42 --tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIr  118 (1202)
T KOG0292|consen   42 --TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIR  118 (1202)
T ss_pred             --hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEE
Confidence              4577888999999999999975 9999999999999999999999888 7999999999999 889999999999999


Q ss_pred             EEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          376 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       376 iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      ||+..++.++. +.+|...|.|..|+|....++++|.|-+||+||+.+-
T Consensus       119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence            99999988775 8999999999999999999999999999999999853

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.82  E-value=2.3e-19  Score=168.06  Aligned_cols=204  Identities=19%  Similarity=0.287  Sum_probs=162.4

Q ss_pred             cchhhhccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~---~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ...+++.||.++|.+++|.....   .|++||.|.++++|.++.+....                               
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-------------------------------  183 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV-------------------------------  183 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-------------------------------
Confidence            34567789999999888754333   59999999999999987643221                               


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-------------------------CeEe
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCL  343 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-------------------------~~~l  343 (465)
                                +.++.-.||...|.++...+++ .+++||.|.+|++|+..+                         +.++
T Consensus       184 ----------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  184 ----------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             ----------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence                      2233334999999999998875 899999999999999321                         1233


Q ss_pred             EEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          344 NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       344 ~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      -.+ +|..+|.++.|++  ...++++|.|.+|+.||+.++...........++++.++|..+.|++|+.|..+++||.++
T Consensus       254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            334 5999999999986  7789999999999999999999988777888999999999999999999999999999997


Q ss_pred             CceeeeEeeecCcccccCCceeeEEEeec-------CCccc-eeeeecC
Q 012367          423 NDLKLEKVDFHDRKKTSGNKITGIQGRIS-------KNYDN-FRRFQTP  463 (465)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~It~~~f~p~-------gs~d~-~~~~~~p  463 (465)
                      +.-......+-+    |.+.|.++.++|.       ++||+ .++|++.
T Consensus       332 ~~gs~v~~s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  332 GDGSVVSQSLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             CCCceeEEeeec----chhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence            765544443333    4478888887775       78887 5777753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=1.3e-19  Score=169.68  Aligned_cols=167  Identities=22%  Similarity=0.443  Sum_probs=137.9

Q ss_pred             ccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ..+..++.+|.+.=++|+|||--. .|+||.--+.|++|...++.                                   
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-----------------------------------  245 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-----------------------------------  245 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCc-----------------------------------
Confidence            344567789999999999999322 58888777889999887632                                   


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC---eEeEEecCCCceEEEEEccCCCCEE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~---~~l~~~~h~~~V~~i~fsp~~~~~l  365 (465)
                          |....   ..+.+|+..|-+|+|+|.  +.++|||.||+|+|||++.+   .++.+-.|...|+.|.|+. ...+|
T Consensus       246 ----W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lL  317 (440)
T KOG0302|consen  246 ----WKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLL  317 (440)
T ss_pred             ----eeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Cccee
Confidence                11122   234579999999999984  79999999999999999988   5666667999999999999 66799


Q ss_pred             EEEeCCCcEEEEeCCCC---e-EEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEec
Q 012367          366 ISGSIDGKVRIWGVCEK---R-VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~---~-~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~  421 (465)
                      ++|+.||+++|||++.-   + +..+..|..+|++|.|+|. ...|++++.|..|.+||+.
T Consensus       318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            99999999999999863   3 3358889999999999995 4578889999999999987

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.82  E-value=1.5e-19  Score=165.32  Aligned_cols=170  Identities=19%  Similarity=0.386  Sum_probs=144.2

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +++|..|..+|+++.|+|....|++|+.|++|+++|+......                                     
T Consensus       165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-------------------------------------  207 (430)
T KOG0640|consen  165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-------------------------------------  207 (430)
T ss_pred             EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH-------------------------------------
Confidence            4678899999999999999999999999999999998753221                                     


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEccCCCCEEEEEe
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                           +..+.+ ....+|.+|.|+|.| +|+.|..--++++||+.+.+|...-    +|.+.|+++.+++ .+++.++||
T Consensus       208 -----rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaS  280 (430)
T KOG0640|consen  208 -----RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTAS  280 (430)
T ss_pred             -----HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEec
Confidence                 011111 245689999999986 8888888899999999999987665    4899999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEeccc--C-CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          370 IDGKVRIWGVCEKRVVDWAD--V-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~--~-~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .||.|+|||--+++++...+  | ...|.+..|..+|+++++.+.|..+++|.+.++.....
T Consensus       281 kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  281 KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            99999999998888876332  3 45699999999999999999999999999998877544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.1e-19  Score=183.44  Aligned_cols=190  Identities=17%  Similarity=0.336  Sum_probs=156.8

Q ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          225 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       225 I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      +..|+|+. +.++|||++..|.|.+||+...                                          +..+.+.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~  127 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT  127 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence            44677764 4569999999999999999752                                          1234566


Q ss_pred             eeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          304 ELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      .|..|...|.++.|++.  ++|+|||.||+|++||++......++ .....|..|.|+|..+++|+++...|.+++||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            78899999999999974  69999999999999999988877777 5777999999999999999999999999999998


Q ss_pred             CCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc----
Q 012367          381 EKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY----  454 (465)
Q Consensus       381 ~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~----  454 (465)
                      ...  ...+.+|.+.|.++.|+|++.+||+|+.|+.|+|||+.+.+...... .+     ...++..+.|.|..+|    
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-In-----Tiapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-IN-----TIAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-Ee-----ecceeeeeeeccCccchhhh
Confidence            643  34588999999999999999999999999999999999766644311 11     2367888999998665    


Q ss_pred             -----c-ceeeeec
Q 012367          455 -----D-NFRRFQT  462 (465)
Q Consensus       455 -----d-~~~~~~~  462 (465)
                           | .+++|++
T Consensus       282 csmv~dtsV~VWDv  295 (839)
T KOG0269|consen  282 CSMVVDTSVHVWDV  295 (839)
T ss_pred             hhccccceEEEEee
Confidence                 2 3788874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=1.1e-19  Score=169.31  Aligned_cols=249  Identities=12%  Similarity=0.236  Sum_probs=177.5

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      +.+-++.+++|       ++....+..++++|.|.|..|++..  ..++|+|.|.+|+.|.+... ..... ........
T Consensus        84 SGs~DG~VkiW-------nlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti-lg~s~~~g  152 (433)
T KOG0268|consen   84 SGSCDGEVKIW-------NLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI-LGKSVYLG  152 (433)
T ss_pred             ccccCceEEEE-------ehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee-eccccccc
Confidence            33445566655       4555567788999999999999987  57999999999999998763 11111 11111100


Q ss_pred             ccCCCeEEeccCCCCceeEecCCceeee-cCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF  346 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~  346 (465)
                      ...........+.+..+      .+|+. ...|++.+.--...|.++.|+|-  ..|++|+.|+.|.|||++++.+++..
T Consensus       153 Idh~~~~~~FaTcGe~i------~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV  226 (433)
T KOG0268|consen  153 IDHHRKNSVFATCGEQI------DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV  226 (433)
T ss_pred             cccccccccccccCcee------eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence            11111111111111111      23333 35688888888889999999985  58999999999999999999999988


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      -..-.-+.|+|+| ....|++|+.|..++.||++.-  .+....+|.+.|.+|.|+|.|+-+++|+.|.+|+||.++.+.
T Consensus       227 i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  227 ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence            7777778999999 9999999999999999999863  344588999999999999999999999999999999998765


Q ss_pred             eeeeEeeecCcccccCCceeeEE------EeecCCcc-ceeeeec
Q 012367          425 LKLEKVDFHDRKKTSGNKITGIQ------GRISKNYD-NFRRFQT  462 (465)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~It~~~------f~p~gs~d-~~~~~~~  462 (465)
                      -.-   .+|.++-   ..+.++.      |..+|+.| |+|+|..
T Consensus       306 SRd---iYhtkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  306 SRD---IYHTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             chh---hhhHhhh---heeeEEEEeccccEEEecCCCcceeeeec
Confidence            421   1222211   2355554      44557777 5888863

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=7.7e-19  Score=165.31  Aligned_cols=205  Identities=24%  Similarity=0.367  Sum_probs=156.8

Q ss_pred             hccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          218 IQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       218 l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      +.||+++|..++|+| +...+||||+|.+|+||++........                                     
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------------------------------------  119 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------------------------------------  119 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------------------------
Confidence            469999999999999 556899999999999999986432211                                     


Q ss_pred             ecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                       -..|+..+.||...|--++|+|.  +.|+|++.|.+|.+|++.++..+-.+.|.+-|+++.|+. +|.+|++.+.|.+|
T Consensus       120 -ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  120 -LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKV  197 (472)
T ss_pred             -cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeeccccee
Confidence             12578899999999999999985  699999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEeCCCCeEEecc-cCCC-CeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeee--EeeecCccccc-CCceeeE
Q 012367          375 RIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLE--KVDFHDRKKTS-GNKITGI  446 (465)
Q Consensus       375 ~iwd~~~~~~~~~~-~~~~-~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~--~~~~~~~~~~~-~~~It~~  446 (465)
                      ||||.++++++.-. +|.+ .-..+.|-.+|..+-+|-.   +..+-+||...-..+.-  .++..+...-+ -..=|++
T Consensus       198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~i  277 (472)
T KOG0303|consen  198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSI  277 (472)
T ss_pred             EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCE
Confidence            99999999988733 5543 3455678889986555543   67899998775444322  22222211111 1233455


Q ss_pred             EEeecCCccceeeee
Q 012367          447 QGRISKNYDNFRRFQ  461 (465)
Q Consensus       447 ~f~p~gs~d~~~~~~  461 (465)
                      -+.....+.++|-+.
T Consensus       278 vYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  278 VYLCGKGDSSIRYFE  292 (472)
T ss_pred             EEEEecCCcceEEEE
Confidence            555555666666554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=6.2e-19  Score=175.80  Aligned_cols=161  Identities=25%  Similarity=0.478  Sum_probs=142.3

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+++|...|..++|++|+++||+|+.|+.|.|||...                                           
T Consensus       296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-------------------------------------------  332 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-------------------------------------------  332 (484)
T ss_pred             hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-------------------------------------------
Confidence            4889999999999999999999999999999999843                                           


Q ss_pred             ecCCcceeeeccccceEEEEecC--CCEEEEE--eCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE-e-C
Q 012367          297 IEESPLQELHGHKGDVLDLAWSN--SNYLLSC--SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-S-I  370 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~--s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg-s-~  370 (465)
                        ..+...+..|.+.|..++|+|  .++||+|  +.|++|++||+.++..+........|..|.|++ ..+-|+++ + .
T Consensus       333 --~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s  409 (484)
T KOG0305|consen  333 --PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYS  409 (484)
T ss_pred             --ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCC
Confidence              256778889999999999998  4688886  469999999999999999999999999999999 55444443 3 3


Q ss_pred             CCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          371 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      ++.|.||+..+...+ .+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            678999999886655 48999999999999999999999999999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=4.3e-19  Score=157.52  Aligned_cols=168  Identities=23%  Similarity=0.347  Sum_probs=138.9

Q ss_pred             cchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          213 YTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      +...+|.||.|||+.++|..  .|.+|||++.||.|.||.-.++.-                                  
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w----------------------------------   92 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW----------------------------------   92 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----------------------------------
Confidence            45678899999999999976  799999999999999999876421                                  


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCC--eEeEE--ecCCCceEEEEEccCC--
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN--QCLNV--FDHHNYVTCVQFNPID--  361 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~--~~l~~--~~h~~~V~~i~fsp~~--  361 (465)
                               ........|...|++++|.|.+   .|++++.||.|.|.+.+..  .....  +.|.-.|++++|.|..  
T Consensus        93 ---------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   93 ---------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             ---------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence                     2355667899999999999864   7889999999999998754  22222  2588899999999941  


Q ss_pred             C-----------CEEEEEeCCCcEEEEeCCCCeEE---ecccCCCCeEEEEEeeCC----CEEEEEEcCCcEEEEEecCC
Q 012367          362 D-----------NYFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       362 ~-----------~~l~sgs~Dg~I~iwd~~~~~~~---~~~~~~~~V~sv~~spdg----~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +           +.|++|+.|..|+||+...+.-.   .+.+|.+.|+.++|.|.-    .+|++++.||+|.||..+..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence            2           46999999999999999886433   378899999999999964    47999999999999988743

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.81  E-value=6.7e-19  Score=184.30  Aligned_cols=200  Identities=22%  Similarity=0.321  Sum_probs=158.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee-
Q 012367          221 HKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI-  297 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  297 (465)
                      |...|.+|..+|+|..+||||  .||.++||+..........                                  ++. 
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------------------------------~~~~   57 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------------------------------KNEN   57 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh----------------------------------hhcc
Confidence            466699999999999999999  9999999997652110000                                  000 


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC------------------CeEeEEe-cCCCceEEEEE
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQF  357 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~------------------~~~l~~~-~h~~~V~~i~f  357 (465)
                      -.+.+.....|.+.|+|+.|+|+| +|++||.|+.|.||+...                  -++...+ +|...|..++|
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W  137 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW  137 (942)
T ss_pred             cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence            135677788899999999999986 999999999999999762                  1244445 59999999999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~  436 (465)
                      +| ++.++++++.|++|.||+..+...+. +.+|...|..+.|.|-|++|++-+.|++|+||++.+-.+.. .+.-+-..
T Consensus       138 sp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k-~It~pf~~  215 (942)
T KOG0973|consen  138 SP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK-SITKPFEE  215 (942)
T ss_pred             CC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE-eeccchhh
Confidence            99 99999999999999999999876665 88999999999999999999999999999999977643322 22222212


Q ss_pred             cccCCceeeEEEeecCCccc
Q 012367          437 KTSGNKITGIQGRISKNYDN  456 (465)
Q Consensus       437 ~~~~~~It~~~f~p~gs~d~  456 (465)
                      ..-...+.-+.++|+|.|-.
T Consensus       216 ~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             CCCcceeeecccCCCcCeec
Confidence            22346778889999998854

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3.5e-19  Score=179.94  Aligned_cols=203  Identities=18%  Similarity=0.331  Sum_probs=156.1

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  270 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~  270 (465)
                      ...+-+.+|.-.+.    ..-...+.|..|+..|+++.|++.. .+|+|||+||+|++||+...                
T Consensus       107 s~nG~i~vWdlnk~----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~----------------  166 (839)
T KOG0269|consen  107 STNGVISVWDLNKS----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK----------------  166 (839)
T ss_pred             cCCCcEEEEecCcc----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc----------------
Confidence            34445555544332    1223346788999999999999854 48999999999999999863                


Q ss_pred             cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEe-
Q 012367          271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVF-  346 (465)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~-  346 (465)
                                                   +...++.+....|.+++|+|.  +.++++...|.+++||++.. ++...+ 
T Consensus       167 -----------------------------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~  217 (839)
T KOG0269|consen  167 -----------------------------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT  217 (839)
T ss_pred             -----------------------------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence                                         234455667789999999984  58999999999999999865 355555 


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE--ecccCCCCeEEEEEeeCCCE-EEEEEc--CCcEEEEEec
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIPDGKG-FIVGSI--TGTCHFYKAS  421 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~V~sv~~spdg~~-l~sgs~--dG~v~iwd~~  421 (465)
                      .|.++|.|+.|+| ++.+|||||.|++|+|||..+.+.-  .......+|..|+|-|+..+ |++++.  |-.|+|||++
T Consensus       218 AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  218 AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            5999999999999 9999999999999999999865433  34455678999999998765 555554  7899999999


Q ss_pred             CCceeeeEeeecCcccccCCceeeEEEee
Q 012367          422 GNDLKLEKVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      ..-+++..+.-|.      ..++++.|--
T Consensus       297 RPYIP~~t~~eH~------~~vt~i~W~~  319 (839)
T KOG0269|consen  297 RPYIPYATFLEHT------DSVTGIAWDS  319 (839)
T ss_pred             cccccceeeeccC------ccccceeccC
Confidence            8777776665554      4566666544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=1.4e-19  Score=168.54  Aligned_cols=229  Identities=16%  Similarity=0.305  Sum_probs=165.4

Q ss_pred             hhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--c
Q 012367          217 EIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--E  293 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  293 (465)
                      .|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+..+...+....+.+.-.      .+..  .....+....  +
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi------~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGI------CVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeE------Eecc--cceEEecCCccee
Confidence            458999999999999986 689999999999999999866554444333322111      1111  1111111111  2


Q ss_pred             eeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .|.+...+++++.+. ..+.+|.-+. ++.++||+.  .|-|||.....++..+. ..+.|.++.|+|....+|++++.|
T Consensus       133 ~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  133 QWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             eeeccCCcceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            345555566666543 4455565543 346677664  47788888777888885 456799999999888899999999


Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      +.|.+||++++.++...-..-.-+.|||+|.+-.+++|+.|.+++.||++.-..++....      .+.+.+.++.|+|.
T Consensus       210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~------dhvsAV~dVdfspt  283 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK------DHVSAVMDVDFSPT  283 (433)
T ss_pred             CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc------ccceeEEEeccCCC
Confidence            999999999998887666667778999999998999999999999999987666554332      24578999999997


Q ss_pred             ------CCccc-eeeeec
Q 012367          452 ------KNYDN-FRRFQT  462 (465)
Q Consensus       452 ------gs~d~-~~~~~~  462 (465)
                            |+||. +|++.+
T Consensus       284 G~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             cchhccccccceEEEeec
Confidence                  68887 566544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.80  E-value=8.8e-19  Score=175.16  Aligned_cols=160  Identities=23%  Similarity=0.398  Sum_probs=143.8

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ....+..+|.||++.|.|++...++. ++|||.|.+++||....                                    
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------------------------------------  131 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------------------------------------  131 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh------------------------------------
Confidence            44456688999999999999888887 99999999999998764                                    


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                                 ....+.||+..|++++.-|.+.++|||.|++|++|.-  ++++++| +|.+.|..+++-|  +..|+++
T Consensus       132 -----------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flSc  196 (745)
T KOG0301|consen  132 -----------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSC  196 (745)
T ss_pred             -----------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEee
Confidence                       2344779999999999999999999999999999986  7788888 6999999999986  5578999


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      +.||.|+.|++....+....+|+.-|.+++..+++..+++++.|++++||+..
T Consensus       197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99999999999888888899999999999988888999999999999999987

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=2.5e-18  Score=173.22  Aligned_cols=220  Identities=20%  Similarity=0.283  Sum_probs=164.6

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-cccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-FGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      -++.||...|++++||.+...++||+. +.|+||+..+.+++......... .........+..+...+..       .+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel-------~v  438 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGEL-------QV  438 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCce-------EE
Confidence            356799999999999999888888765 67999999988877655443111 0111222222222222211       12


Q ss_pred             eeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-----CeE--------eEEecCCCceEEEEEcc
Q 012367          295 FQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQC--------LNVFDHHNYVTCVQFNP  359 (465)
Q Consensus       295 ~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-----~~~--------l~~~~h~~~V~~i~fsp  359 (465)
                      |++. ...+.+..+|.+.|++++.+|++ .+++||.|++|++||..-     +..        .+++.-.+.|.|+.++|
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            3332 34456677999999999999986 899999999999999631     111        13344677899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc
Q 012367          360 IDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (465)
Q Consensus       360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~  438 (465)
                       |+++++.+-.|++|+||-+.+-+.. .+.+|.-+|.++..+||++.++||+.|.+|++|-++=+.-       |.....
T Consensus       519 -dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-------HKS~fA  590 (888)
T KOG0306|consen  519 -DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-------HKSFFA  590 (888)
T ss_pred             -CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh-------hhhhhc
Confidence             9999999999999999999987654 5899999999999999999999999999999998775433       223334


Q ss_pred             cCCceeeEEEeec
Q 012367          439 SGNKITGIQGRIS  451 (465)
Q Consensus       439 ~~~~It~~~f~p~  451 (465)
                      |...|.+++|.|.
T Consensus       591 HdDSvm~V~F~P~  603 (888)
T KOG0306|consen  591 HDDSVMSVQFLPK  603 (888)
T ss_pred             ccCceeEEEEccc
Confidence            5578999999995

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.3e-19  Score=159.20  Aligned_cols=186  Identities=24%  Similarity=0.375  Sum_probs=149.1

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      -..|++.|..+...-.|+.|||++.|++|+|+.+.+...                                         
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------------------------------------   45 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------------------------------------   45 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence            357999999999988999999999999999999986421                                         


Q ss_pred             cCCcceeeeccccceEEEEec-C--CCEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCC-CCEEEEEeC
Q 012367          298 EESPLQELHGHKGDVLDLAWS-N--SNYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSI  370 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s-~--~~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~-~~~l~sgs~  370 (465)
                       .+++.++.||.++|..++|. |  +++|++|+.||.|.||.-.+++-.+..   .|...|++|+|.|.+ +-.|++++.
T Consensus        46 -s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   46 -SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             -ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence             14577899999999999996 5  359999999999999999888543333   388999999999943 457899999


Q ss_pred             CCcEEEEeCCCC-eEE---ecccCCCCeEEEEEeeC---C-----------CEEEEEEcCCcEEEEEecCCceeeeE-ee
Q 012367          371 DGKVRIWGVCEK-RVV---DWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEK-VD  431 (465)
Q Consensus       371 Dg~I~iwd~~~~-~~~---~~~~~~~~V~sv~~spd---g-----------~~l~sgs~dG~v~iwd~~~~~~~~~~-~~  431 (465)
                      ||.|.|.+.+.. .-.   ....|.-.|++++|.|.   |           +.|++|+.|..|+||+...+...++. +.
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~  204 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE  204 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence            999999998764 221   25668899999999996   5           56999999999999999987555442 32


Q ss_pred             ecCcccccCCceeeEEEeec
Q 012367          432 FHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       432 ~~~~~~~~~~~It~~~f~p~  451 (465)
                      .      +...+..++++|+
T Consensus       205 ~------H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  205 G------HKDWVRDVAWAPS  218 (299)
T ss_pred             h------cchhhhhhhhccc
Confidence            2      3456666766665

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.79  E-value=7.4e-18  Score=173.69  Aligned_cols=185  Identities=21%  Similarity=0.415  Sum_probs=154.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .|...|.+..|+  +.++++++.|.+|++|+..++...                                          
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------  241 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------  241 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEE------------------------------------------
Confidence            367778999998  458999999999999998875331                                          


Q ss_pred             CcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw  377 (465)
                        ...+.||.+.|.++++.. +++|++|+.|+++++||..+|+|...+. |.+.|.|+..   .+.++++|+.|.+|++|
T Consensus       242 --~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  242 --LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVW  316 (537)
T ss_pred             --EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEE
Confidence              233779999999999975 5799999999999999999999999995 9999999998   45889999999999999


Q ss_pred             eCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee-----c
Q 012367          378 GVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI-----S  451 (465)
Q Consensus       378 d~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p-----~  451 (465)
                      ++.++..+.... |...|+++.++  +.++++|+.||+|++||+.+++.. ..+..      +...|+++++.+     +
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl-~sl~g------H~~~V~sl~~~~~~~~~S  387 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL-KSLSG------HTGRVYSLIVDSENRLLS  387 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee-eeecC------CcceEEEEEecCcceEEe
Confidence            999999888555 99999999998  789999999999999999966553 23332      446777776665     5


Q ss_pred             CCccc-eeeeec
Q 012367          452 KNYDN-FRRFQT  462 (465)
Q Consensus       452 gs~d~-~~~~~~  462 (465)
                      |++|+ +++|+.
T Consensus       388 gs~D~~IkvWdl  399 (537)
T KOG0274|consen  388 GSLDTTIKVWDL  399 (537)
T ss_pred             eeeccceEeecC
Confidence            88887 677764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.79  E-value=1.8e-18  Score=163.76  Aligned_cols=202  Identities=20%  Similarity=0.324  Sum_probs=153.2

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      .........+|.||++.|+++.|......+++|+.|.+|++||+....+....+..............+.-++. ...  
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~-Dkk--  323 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHF-DKK--  323 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccc-ccc--
Confidence            45566777899999999999999987777999999999999999987776655554433322222111111100 000  


Q ss_pred             EecCCceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccC
Q 012367          288 VVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPI  360 (465)
Q Consensus       288 ~~~~~~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~  360 (465)
                          ...|++ ...+......| +.|+++..++++ .|++++.|.++.+.|+++......|.     ....++.++|+| 
T Consensus       324 ----vRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-  397 (459)
T KOG0288|consen  324 ----VRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-  397 (459)
T ss_pred             ----eEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-
Confidence                112332 23445555555 499999999886 78899999999999999998888874     344589999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEe-ccc-C-CCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367          361 DDNYFISGSIDGKVRIWGVCEKRVVD-WAD-V-RDVISAICYIPDGKGFIVGSITGTCHFY  418 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~-~-~~~V~sv~~spdg~~l~sgs~dG~v~iw  418 (465)
                      ++.|+++||.||.|+||++.++++.. ... + ...|++++|+|.|.+|++++.++.+.+|
T Consensus       398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999999998875 222 2 3369999999999999999999999999

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.79  E-value=2.9e-18  Score=171.47  Aligned_cols=173  Identities=21%  Similarity=0.415  Sum_probs=143.9

Q ss_pred             CCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367          189 SEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG  268 (465)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~  268 (465)
                      .+.+.+..+++|....         +...++||+.+||++++-|.+ .++|||.|.+|++|.-.                
T Consensus       116 iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----------------  169 (745)
T KOG0301|consen  116 ISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----------------  169 (745)
T ss_pred             EecccccceEEecchh---------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC----------------
Confidence            4456677777775443         334588999999999999988 89999999999999854                


Q ss_pred             cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC
Q 012367          269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH  348 (465)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h  348 (465)
                                                     +.++++.||++-|..+++-+++.++||+.||.|++|++.....+..++|
T Consensus       170 -------------------------------~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh  218 (745)
T KOG0301|consen  170 -------------------------------TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH  218 (745)
T ss_pred             -------------------------------chhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc
Confidence                                           4578899999999999999998999999999999999954444444589


Q ss_pred             CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .+.|+++...+ ++..+++++.|++++||+..  .+.....|.. .|+++++-++|. +++|+.||.||||..+.
T Consensus       219 tn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  219 TNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            99999999777 88999999999999999977  4445444544 899999998885 68888999999998873

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.2e-17  Score=153.39  Aligned_cols=186  Identities=22%  Similarity=0.325  Sum_probs=143.6

Q ss_pred             CCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecC
Q 012367          186 KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTD  263 (465)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~  263 (465)
                      +-..+.+.+.++.+.       ++..-.....+..|.+.|+++.|.++-.  .|++|++||.|.+|++...         
T Consensus        54 ~~~aSGssDetI~IY-------Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W---------  117 (362)
T KOG0294|consen   54 PYVASGSSDETIHIY-------DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---------  117 (362)
T ss_pred             eeEeccCCCCcEEEE-------eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe---------
Confidence            334445555555544       3333344567778999999999999876  8999999999999999864         


Q ss_pred             CCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE
Q 012367          264 DGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC  342 (465)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~  342 (465)
                                                          ..+..+.+|.+.|+.++++|.+ +.++.+.|+.+++||+-.|+.
T Consensus       118 ------------------------------------~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen  118 ------------------------------------ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             ------------------------------------EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence                                                3477888999999999999987 566999999999999977654


Q ss_pred             eEEecCCCc----------------------------------------eEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          343 LNVFDHHNY----------------------------------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       343 l~~~~h~~~----------------------------------------V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      -....-...                                        +.|+.|.  ++.++++|+.|+.|++||....
T Consensus       162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~  239 (362)
T KOG0294|consen  162 AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSD  239 (362)
T ss_pred             ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCC
Confidence            333322222                                        3344443  5678999999999999999876


Q ss_pred             eEEe-cccCCCCeEEEEEe--eCCCEEEEEEcCCcEEEEEecCCce
Q 012367          383 RVVD-WADVRDVISAICYI--PDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       383 ~~~~-~~~~~~~V~sv~~s--pdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      .+.. +.+|...|.++.+-  |++.+|++++.||.|++||++..+.
T Consensus       240 ~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  240 TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            6554 78899999999843  6788999999999999999987643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.78  E-value=1.7e-17  Score=148.74  Aligned_cols=197  Identities=17%  Similarity=0.261  Sum_probs=150.0

Q ss_pred             hhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-----------cccCCCeEEeccCC
Q 012367          215 SQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-----------SNAKEGKIKFGKKK  282 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  282 (465)
                      .-...+|.+.|-.++|+|. ...||+++.|.+|++||+..+++..........+.           .......+.+....
T Consensus        57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r  136 (313)
T KOG1407|consen   57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDAR  136 (313)
T ss_pred             hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence            3456799999999999985 45999999999999999988776654443322211           11111111100000


Q ss_pred             -------------CCceeEecCCceeee-------------cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEE
Q 012367          283 -------------SSHVPVVIPDEVFQI-------------EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMW  335 (465)
Q Consensus       283 -------------~~~~~~~~~~~~~~~-------------~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lW  335 (465)
                                   ........++.+|-+             +-+|+..+++|.....||.|+|+| ++++|+.|..|.||
T Consensus       137 ~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  137 TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW  216 (313)
T ss_pred             ccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence                         000000111111111             357888999999999999999986 99999999999999


Q ss_pred             eCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC
Q 012367          336 QVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT  412 (465)
Q Consensus       336 D~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d  412 (465)
                      |+..--|++.| .+.-+|..|.|+. ++++||+||.|..|-|=++.+|..+....+.++...|+|+|....|+-++.|
T Consensus       217 D~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  217 DVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence            99999999999 4777999999999 9999999999999999999999999999999999999999999988887754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.78  E-value=1.5e-17  Score=158.28  Aligned_cols=165  Identities=15%  Similarity=0.269  Sum_probs=135.7

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ....+..|.++|+.+..+|.|.||++++.||+..+.|+.++...+....                               
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-------------------------------  343 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-------------------------------  343 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-------------------------------
Confidence            3455679999999999999999999999999999999988654332111                               


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                                  .+..-.+++++|+||| .+.+|..|+.|++||+.++..+..| +|.++|..|+|+. +|.|+++++.|
T Consensus       344 ------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add  410 (506)
T KOG0289|consen  344 ------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADD  410 (506)
T ss_pred             ------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecC
Confidence                        0122357899999998 6679999999999999999999999 5999999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          372 GKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      +.|++||++.-+......  ....|.+++|.+.|.+|+.++.|=.|++++-.+
T Consensus       411 ~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence            999999999866554332  233699999999999999997776666666443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.78  E-value=5.1e-17  Score=157.29  Aligned_cols=230  Identities=23%  Similarity=0.365  Sum_probs=168.4

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC--Ccc-cccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFG-SNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ++..+|.+.|.+++.-.+|. |+||+.|..|..|| ...........++.  .+. .......+.++...+......   
T Consensus       281 k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt---  355 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT---  355 (626)
T ss_pred             eEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee---
Confidence            34449999999999999996 55599999999999 32222211111111  000 000011122222222111111   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                          +...--....+|....+.++.+|+ +++++++.|++|+||+  ..++........++.|+.|+| .+ .+|.|...
T Consensus       356 ----~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~  427 (626)
T KOG2106|consen  356 ----LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTAT  427 (626)
T ss_pred             ----ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeecc
Confidence                112223456789999999999996 5999999999999999  677777777888999999999 77 99999999


Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      |...+.|..+..++........+++++|+|+|.+||+|+.|+.|++|.++.+...+......     ++.+||.+.|+++
T Consensus       428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-----~gs~ithLDwS~D  502 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-----SGSPITHLDWSSD  502 (626)
T ss_pred             ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-----cCceeEEeeecCC
Confidence            99999999998888866669999999999999999999999999999999888877654322     2378999999999


Q ss_pred             CCcc------ceeeeecC
Q 012367          452 KNYD------NFRRFQTP  463 (465)
Q Consensus       452 gs~d------~~~~~~~p  463 (465)
                      ++|-      .-++++.|
T Consensus       503 s~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             CceEEeccCceEEEEEcc
Confidence            8873      34555565

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.5e-18  Score=172.26  Aligned_cols=189  Identities=15%  Similarity=0.309  Sum_probs=153.4

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA  271 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  271 (465)
                      +.++.++.|........++. .....++.|.+.|+.+...-+|+.|+|+|.|-+|++|+......               
T Consensus        44 GRDg~i~~W~~~~d~~~~s~-~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---------------  107 (735)
T KOG0308|consen   44 GRDGIIRLWSVTQDSNEPST-PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---------------  107 (735)
T ss_pred             CCCceEEEeccccccCCccc-chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---------------
Confidence            34455555544333322222 24678899999999999999999999999999999999875321               


Q ss_pred             CCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEe-cCC-CEEEEEeCCCeEEEEeCCCC--eEeEEe-
Q 012367          272 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNS-NYLLSCSMDKTVRMWQVGCN--QCLNVF-  346 (465)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-s~~-~~l~s~s~DgtV~lWD~~~~--~~l~~~-  346 (465)
                                                  -+..++..|.+.|.|+++ .++ .+++||+-|+.|.|||+.++  +.+..+ 
T Consensus       108 ----------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n  159 (735)
T KOG0308|consen  108 ----------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN  159 (735)
T ss_pred             ----------------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence                                        235567789999999999 454 48999999999999999987  333333 


Q ss_pred             ---------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEE
Q 012367          347 ---------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCH  416 (465)
Q Consensus       347 ---------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~  416 (465)
                               ++...|++++.++ .+..|++|+..+.|++||.++++ ++.+.+|++.|.++-.++||..+++++.||+|+
T Consensus       160 ~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr  238 (735)
T KOG0308|consen  160 NVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR  238 (735)
T ss_pred             ccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence                     3667899999999 88999999999999999999865 556889999999999999999999999999999


Q ss_pred             EEEecCCce
Q 012367          417 FYKASGNDL  425 (465)
Q Consensus       417 iwd~~~~~~  425 (465)
                      +||+.-.+-
T Consensus       239 lWdLgqQrC  247 (735)
T KOG0308|consen  239 LWDLGQQRC  247 (735)
T ss_pred             eeeccccce
Confidence            999975443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.77  E-value=2.9e-18  Score=166.18  Aligned_cols=200  Identities=19%  Similarity=0.376  Sum_probs=143.2

Q ss_pred             hhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          217 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .-+||...++|.+|+|..+ .++|++.||++||||+.........+.+                                
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~--------------------------------  310 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT--------------------------------  310 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee--------------------------------
Confidence            4469999999999999766 8999999999999999874322111110                                


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE--eEEe--cCCC--ceEEEEEccCCCCEEEEE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF--DHHN--YVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~--l~~~--~h~~--~V~~i~fsp~~~~~l~sg  368 (465)
                             +...+..-.++.++|++++ .+++|..||.|.+|+......  ...+  .|..  .|+||.|++ ++++|++-
T Consensus       311 -------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSR  382 (641)
T KOG0772|consen  311 -------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSR  382 (641)
T ss_pred             -------ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhc
Confidence                   0111344578899999986 788999999999999865432  2222  3665  899999999 99999999


Q ss_pred             eCCCcEEEEeCCCC-eEE-ecccC--CCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeeeEeeecCcccc
Q 012367          369 SIDGKVRIWGVCEK-RVV-DWADV--RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKT  438 (465)
Q Consensus       369 s~Dg~I~iwd~~~~-~~~-~~~~~--~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~~~~~~~~~~~  438 (465)
                      +.|+++++||++.- +.+ .+.+.  .-.-+.++|+|+.+.|++|+.      .|++.+||..+-...+ .+.+.+    
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~-ki~i~~----  457 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY-KIDIST----  457 (641)
T ss_pred             cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE-EecCCC----
Confidence            99999999999863 333 34443  334678999999999999884      6789999987655543 333333    


Q ss_pred             cCCceeeEEEeec-------CCccceeeeecC
Q 012367          439 SGNKITGIQGRIS-------KNYDNFRRFQTP  463 (465)
Q Consensus       439 ~~~~It~~~f~p~-------gs~d~~~~~~~p  463 (465)
                        ..+..++|+|-       ....++++++-|
T Consensus       458 --aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  458 --ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             --ceEEEEeecchhhheeeecCCCceEEEECc
Confidence              34555555543       233456666554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=3e-17  Score=161.79  Aligned_cols=250  Identities=19%  Similarity=0.303  Sum_probs=170.2

Q ss_pred             cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC--cccc--cCCCeEEeccCC
Q 012367          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG--FGSN--AKEGKIKFGKKK  282 (465)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~  282 (465)
                      +.-.+..+...+.||++.|+||...|.|.+||+|+.||+|+||.+.++.++.........  +...  .....+.++...
T Consensus       385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC
Confidence            333455566778999999999999999999999999999999999998877544332211  0000  000000000000


Q ss_pred             C--------C---------ceeEecCC--------ceeeec-----CCcceeeeccccceEEEEecCCC-EEEEEeCC--
Q 012367          283 S--------S---------HVPVVIPD--------EVFQIE-----ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD--  329 (465)
Q Consensus       283 ~--------~---------~~~~~~~~--------~~~~~~-----~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D--  329 (465)
                      .        +         ......+.        ..|.-.     ..-++..-.|...|..+.|+..| +|++...+  
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence            0        0         00000000        011111     11244555788999999999765 88876554  


Q ss_pred             -CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEE
Q 012367          330 -KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGF  406 (465)
Q Consensus       330 -gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l  406 (465)
                       ..|.|+++........| ...+.|.++.|+| ...+|+.++ ...|||||+..+.++. +.....+|..++.+|.|..|
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence             67999999887777777 4677899999999 666666665 5789999999887765 56677889999999999999


Q ss_pred             EEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcccee
Q 012367          407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFR  458 (465)
Q Consensus       407 ~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~~  458 (465)
                      ++|+.|+.+..||+.-+..++..+.+|.+.......-...-+..+++.|+..
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv  674 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTV  674 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcE
Confidence            9999999999999998888888777777433333333333334457777643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.76  E-value=2.7e-17  Score=157.73  Aligned_cols=246  Identities=18%  Similarity=0.289  Sum_probs=175.5

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC------C-Cccc---ccCCCeEEeccCCCC
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD------G-GFGS---NAKEGKIKFGKKKSS  284 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~------~-~~~~---~~~~~~~~~~~~~~~  284 (465)
                      .+.+..|.-+|.||+++|++++.++++.||+|.=|++.++..........      . ....   ......+.+......
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            45667899999999999999999999999999999998876442111110      0 0000   000111111111111


Q ss_pred             -ceeEecCCc---eeee-cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEE
Q 012367          285 -HVPVVIPDE---VFQI-EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQF  357 (465)
Q Consensus       285 -~~~~~~~~~---~~~~-~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~f  357 (465)
                       +......+.   +|.. ...+++.+.+|.+.|.+++|-.+ ..|++++.|++|++|++.....+.++ +|.+.|..|..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence             111111111   2222 34677889999999999999864 58999999999999999987776665 89999999988


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~  437 (465)
                      .. -++.+-+|+.|+++++|++.......+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+.....-..|+-..
T Consensus       295 L~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  295 LS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             hc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccC
Confidence            87 777788888999999999987777778899999999999865 4889999999999999987766544433343221


Q ss_pred             c--cC---CceeeEEEeec------CCccc-eeeeec
Q 012367          438 T--SG---NKITGIQGRIS------KNYDN-FRRFQT  462 (465)
Q Consensus       438 ~--~~---~~It~~~f~p~------gs~d~-~~~~~~  462 (465)
                      -  +.   ..|++++..|.      |+.+. +|+|.+
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            1  11   38899977765      66654 788875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=2.6e-17  Score=158.95  Aligned_cols=204  Identities=16%  Similarity=0.215  Sum_probs=168.7

Q ss_pred             CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367          191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  270 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~  270 (465)
                      ....+.+++|.-       ..-.+.+.+++|+..|++|.++-...|||+++..|-|.|..+.+.....            
T Consensus        97 gG~~~~Vkiwdl-------~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt------------  157 (673)
T KOG4378|consen   97 GGQSGCVKIWDL-------RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT------------  157 (673)
T ss_pred             cCcCceeeehhh-------HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc------------
Confidence            344556666643       3334456788999999999999999999999999999999988743211            


Q ss_pred             cCCCeEEeccCCCCceeEecCCceeeecCCcceeee-ccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367          271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-  346 (465)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~-  346 (465)
                                                       +|. +....|.-+.|++..  +|.+++.+|+|.+||+....++..+ 
T Consensus       158 ---------------------------------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~  204 (673)
T KOG4378|consen  158 ---------------------------------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS  204 (673)
T ss_pred             ---------------------------------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh
Confidence                                             111 112345578888863  7889999999999999988888877 


Q ss_pred             -cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          347 -DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       347 -~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                       .|..+...|+|+|.+..+|++.+.|.+|.+||++............+.++|+|.++|.+|++|+..|.|..||++..+.
T Consensus       205 ~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  205 EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence             4999999999999999999999999999999999888877777788999999999999999999999999999999988


Q ss_pred             eeeEeeecCcccccCCceeeEEEeecC
Q 012367          426 KLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       426 ~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      ++..+..|.      ..|+.++|-|+.
T Consensus       285 Pv~v~sah~------~sVt~vafq~s~  305 (673)
T KOG4378|consen  285 PVAVRSAHD------ASVTRVAFQPSP  305 (673)
T ss_pred             CceEeeecc------cceeEEEeeecc
Confidence            888777766      459999888874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=4.1e-17  Score=149.55  Aligned_cols=177  Identities=20%  Similarity=0.323  Sum_probs=144.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      -...|..|.|+|.+..|+.+++||++++|++....                                             
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---------------------------------------------   46 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---------------------------------------------   46 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------------------------------------
Confidence            46779999999999999999999999999998631                                             


Q ss_pred             cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                       +.....|..++++++|.+...+++|+.||.|+++|+.++.....-.|...|.||.+++ ....+++||.|++|++||.+
T Consensus        47 -l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   47 -LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             -hhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence             2222348899999999999899999999999999999998888888999999999999 88899999999999999999


Q ss_pred             CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       381 ~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      ....+........|.++...  |..|++|+.+..+.+||++.......     .....-...+.++++.|+
T Consensus       125 ~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q-----~reS~lkyqtR~v~~~pn  188 (323)
T KOG1036|consen  125 NKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQ-----RRESSLKYQTRCVALVPN  188 (323)
T ss_pred             ccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhh-----hccccceeEEEEEEEecC
Confidence            86666555566678777665  77999999999999999998766541     111111245666777773

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.6e-17  Score=158.71  Aligned_cols=163  Identities=23%  Similarity=0.310  Sum_probs=139.2

Q ss_pred             hccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          218 IQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      -++|+..|..|+|+.+-+ .|||||.|.+|++||+.++                                          
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g------------------------------------------  276 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG------------------------------------------  276 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC------------------------------------------
Confidence            358999999999988755 8999999999999999985                                          


Q ss_pred             ecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                         +|..++..|.+.|.++.|+|.  ..|++|+.|++|.+.|.+.. ..-..+...+.|..++|+|.....|+++..||+
T Consensus       277 ---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  277 ---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             ---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence               455666679999999999985  49999999999999999853 334445677889999999989999999999999


Q ss_pred             EEEEeCCCC-e-EEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce
Q 012367          374 VRIWGVCEK-R-VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       374 I~iwd~~~~-~-~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      |+-+|+|.. + +.....|.+.|.++++++.- .++++++.|+.|++|++.....
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            999999864 4 44588899999999999854 4688899999999999986544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-16  Score=140.62  Aligned_cols=201  Identities=21%  Similarity=0.357  Sum_probs=140.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .....|.+++|+|.|.+.|.|+...+++|............                        ......|..      
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~------------------------hea~~~pp~------   79 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA------------------------HEAAKQPPS------   79 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccc------------------------cccccCCCe------
Confidence            45678999999999999999999999999865432110000                        000000000      


Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE-----Ee-cCCCceEEEEEcc-------------
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF-DHHNYVTCVQFNP-------------  359 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~-----~~-~h~~~V~~i~fsp-------------  359 (465)
                      -..+.-+-|.+.|.|.+|+|.+ ++++|+.|++|++.-.....|..     .| -|.+.|..++|..             
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence            0122334589999999999986 88899999999998654332211     12 2445555555532             


Q ss_pred             --------------------------------CCCCEEEEEeCCCcEEEEeCCCCeEEeccc--------CCCCeEEEEE
Q 012367          360 --------------------------------IDDNYFISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICY  399 (465)
Q Consensus       360 --------------------------------~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--------~~~~V~sv~~  399 (465)
                                                      .++-.|++|+.|.+||+||++-...+...+        ....|.+++.
T Consensus       160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence                                            034579999999999999998776664222        1367999999


Q ss_pred             eeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec------CCccce
Q 012367          400 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS------KNYDNF  457 (465)
Q Consensus       400 spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~------gs~d~~  457 (465)
                      .|.|+.|++|-.|..|.+||++++..... +.      .+...|..+.|+|+      ++||+-
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~-f~------phsadir~vrfsp~a~yllt~syd~~  296 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQR-FH------PHSADIRCVRFSPGAHYLLTCSYDMK  296 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeee-eC------CCccceeEEEeCCCceEEEEecccce
Confidence            99999999999999999999999876432 22      24468999999998      566653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.5e-17  Score=152.61  Aligned_cols=199  Identities=19%  Similarity=0.326  Sum_probs=164.2

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ....++|.||++.||.++.......+.|++.|.+-+||.++++                                     
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-------------------------------------  180 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-------------------------------------  180 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc-------------------------------------
Confidence            3456788999999999999887779999999999999999975                                     


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC------CC-------------------------
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GC-------------------------  339 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~------~~-------------------------  339 (465)
                              .++..+.||.+.|++|+|++.+ +++++|.|++..||..      ..                         
T Consensus       181 --------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~  252 (481)
T KOG0300|consen  181 --------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS  252 (481)
T ss_pred             --------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence                    4467788999999999999986 7889999999999972      11                         


Q ss_pred             -----C----eEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEE
Q 012367          340 -----N----QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIV  408 (465)
Q Consensus       340 -----~----~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~s  408 (465)
                           +    .++..+ +|...|.+..|-. .++.+++++.|++..+||+.++.++. +.+|....+.++-+|..+.+++
T Consensus       253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT  331 (481)
T KOG0300|consen  253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT  331 (481)
T ss_pred             ccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE
Confidence                 0    122333 4888899999998 99999999999999999999999987 8899999999999999999999


Q ss_pred             EEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec-----CCccc-eeeeec
Q 012367          409 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS-----KNYDN-FRRFQT  462 (465)
Q Consensus       409 gs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~-----gs~d~-~~~~~~  462 (465)
                      .+.|-+.++||.+..-.....  +++    +...+|+..|..+     |+.|. +.+|+.
T Consensus       332 sSrDtTFRLWDFReaI~sV~V--FQG----HtdtVTS~vF~~dd~vVSgSDDrTvKvWdL  385 (481)
T KOG0300|consen  332 SSRDTTFRLWDFREAIQSVAV--FQG----HTDTVTSVVFNTDDRVVSGSDDRTVKVWDL  385 (481)
T ss_pred             eccCceeEeccchhhcceeee--ecc----cccceeEEEEecCCceeecCCCceEEEeee
Confidence            999999999999954332223  333    4478888888754     77776 566653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.2e-18  Score=174.94  Aligned_cols=195  Identities=23%  Similarity=0.437  Sum_probs=162.2

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+.+.+|...|.|+..-..++.+++|+.|..+.+|.+...                                        
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------------------   60 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------------------   60 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC----------------------------------------
Confidence            3677799999999999888899999999999999998753                                        


Q ss_pred             eeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                           .++..+.+|..+|.++.|++. .+|++|+.+|+|++||+..++.++++ +|...+..++|+| -+.|+++|+.|.
T Consensus        61 -----~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdt  134 (825)
T KOG0267|consen   61 -----NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDT  134 (825)
T ss_pred             -----chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccc
Confidence                 224457899999999999986 58889999999999999999988887 7999999999999 999999999999


Q ss_pred             cEEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          373 KVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       373 ~I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .+++||++ .|....+.+|...|..+.|+|+|++++.|+.|.+++|||+..+++.. .+.      ++..++..+.|.|.
T Consensus       135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~-ef~------~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK-EFK------SHEGKVQSLEFHPL  207 (825)
T ss_pred             cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc-ccc------cccccccccccCch
Confidence            99999998 56666688899999999999999999999999999999998887632 222      22245555555554


Q ss_pred             ------CCcc-ceeeeec
Q 012367          452 ------KNYD-NFRRFQT  462 (465)
Q Consensus       452 ------gs~d-~~~~~~~  462 (465)
                            |+.| ++++|+.
T Consensus       208 e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  208 EVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             hhhhccCCCCceeeeecc
Confidence                  4444 5677764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.9e-17  Score=158.24  Aligned_cols=200  Identities=24%  Similarity=0.403  Sum_probs=147.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceE
Q 012367          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  313 (465)
Q Consensus       234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~  313 (465)
                      |+|+|.|..|..|.|||+.-........               .++...+         +......+.-....+|+..|.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~---------------~LGs~~s---------k~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCV---------------TLGSKAS---------KKKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccce---------------eechhhh---------hhhhhhcccccccccchHHHH
Confidence            6799999999999999986432211110               0100000         000001112223457999999


Q ss_pred             EEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-eEEeccc
Q 012367          314 DLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWAD  389 (465)
Q Consensus       314 ~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~  389 (465)
                      +|+|+..  +.|+|||.|+||++||+.+++|...+. |...|.++.|+|..+.+|++|+.|++|++.|.+.. ..-....
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            9999864  699999999999999999999999997 77899999999999999999999999999999852 2222334


Q ss_pred             CCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC--------Cccceeee
Q 012367          390 VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK--------NYDNFRRF  460 (465)
Q Consensus       390 ~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g--------s~d~~~~~  460 (465)
                      ..+.|-.++|.|.. ..+++++.||+|+-+|++....++.++..|.      ..|+++.+++..        ....+.+|
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd------~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD------DEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc------CCcceEEecCCCCcceeeccccceEEEE
Confidence            56779999999965 5688888999999999998876666777776      578888777652        22446777


Q ss_pred             ecC
Q 012367          461 QTP  463 (465)
Q Consensus       461 ~~p  463 (465)
                      ..+
T Consensus       402 ~~~  404 (463)
T KOG0270|consen  402 KFD  404 (463)
T ss_pred             eec
Confidence            654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=2.3e-17  Score=164.02  Aligned_cols=192  Identities=19%  Similarity=0.344  Sum_probs=157.6

Q ss_pred             CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEE-CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKF-SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      .+.+..+++|...+.-     -.+..+|..|++.|.|+++ .++..++||||-|+.|.+||+.++........       
T Consensus        91 ~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~-------  158 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF-------  158 (735)
T ss_pred             ecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc-------
Confidence            3445667777554432     3567889999999999999 88888999999999999999997532000000       


Q ss_pred             ccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-  346 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-  346 (465)
                                                  .......+. |+...|.+++.++.+ .+++|+..+.+++||.++.+.+..+ 
T Consensus       159 ----------------------------n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr  210 (735)
T KOG0308|consen  159 ----------------------------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR  210 (735)
T ss_pred             ----------------------------cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee
Confidence                                        001122222 889999999999876 7889999999999999998877666 


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +|.+.|.++..++ +|+.++++|.||+|++||+..++++. +..|...|+++..+|+=..+++|+.||.|..=|+++.
T Consensus       211 GHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  211 GHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            7999999999999 99999999999999999999887765 7889999999999999999999999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.75  E-value=4.7e-17  Score=148.70  Aligned_cols=189  Identities=22%  Similarity=0.363  Sum_probs=140.0

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .+..+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++                                    
T Consensus        62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------------------------------------  105 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------------------------------------  105 (347)
T ss_pred             cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------------------------------------
Confidence            34446677899999999999999999999999999999999753                                    


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEecCCCc-----------------
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------------  351 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~-----------------  351 (465)
                                +..+..|.++|..+.|-+.   ..|+|||.|++|+.||+++..++.++...+.                 
T Consensus       106 ----------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~  175 (347)
T KOG0647|consen  106 ----------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAE  175 (347)
T ss_pred             ----------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecC
Confidence                      4455679999999999864   3799999999999999998766655433222                 


Q ss_pred             -------------------------eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE---EecccCC---------CCe
Q 012367          352 -------------------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV---VDWADVR---------DVI  394 (465)
Q Consensus       352 -------------------------V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~---~~~~~~~---------~~V  394 (465)
                                               +.||+..+ +...++.|+..|.+.|..+..+..   ..+.-|.         -.|
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence                                     45666666 555567777777777777655311   1122222         248


Q ss_pred             EEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       395 ~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ++|+|+|.-..|++++.||++.+||-..... +...      ..+..+|+...|..+|++
T Consensus       255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s------~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTS------ETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             cceEeecccceEEEecCCceEEEecchhhhh-hhcc------CcCCCccceeEecCCCCE
Confidence            8899999989999999999999999764332 2111      223467888888877764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.75  E-value=1.5e-17  Score=160.70  Aligned_cols=232  Identities=19%  Similarity=0.378  Sum_probs=165.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEE---eccCCCCceeE--ecCCce
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK---FGKKKSSHVPV--VIPDEV  294 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~  294 (465)
                      +|..-|.++.+|...++++|||. |-|+|||+.....    ..+.....+....+.+.   +...+...+..  .....+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~----k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi  491 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN----KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI  491 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC----CCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence            79999999999999999999998 6699999976421    11112222222222222   11111111110  011124


Q ss_pred             eeecCCcc---eeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367          295 FQIEESPL---QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       295 ~~~~~~~~---~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                      |++.....   .++..-.-....++.+|| +..++|..||.|.|||+.+...++.| +|.+.+.||.+++ +|..|-||+
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGG  570 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGG  570 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCC
Confidence            44432211   122222335567888998 47779999999999999999999999 5999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      .|++||.||++.++.+........|.++.+.|++.+|++|-.++.+-+.....  .+..++.+|.      .-|.++.|.
T Consensus       571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlhe------ScVLSlKFa  642 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHE------SCVLSLKFA  642 (705)
T ss_pred             CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC--ccceeecccc------cEEEEEEec
Confidence            99999999999998888788889999999999999999999999876665543  3333555555      568888887


Q ss_pred             ecCCc------cc-eeeeecCCC
Q 012367          450 ISKNY------DN-FRRFQTPYT  465 (465)
Q Consensus       450 p~gs~------d~-~~~~~~p~~  465 (465)
                      +.|.+      |+ +-.|-|||+
T Consensus       643 ~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  643 YCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             ccCceeeecCchhhhhhccCccc
Confidence            77644      44 688999984

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=5.9e-17  Score=148.71  Aligned_cols=152  Identities=24%  Similarity=0.357  Sum_probs=133.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      -.|+.|++.|.+||.|..||.|.|||+.+.                                             .+-+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---------------------------------------------~iar~   60 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---------------------------------------------RIARM   60 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc---------------------------------------------chhhh
Confidence            789999999999999999999999999873                                             23456


Q ss_pred             eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC-----------------------
Q 012367          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-----------------------  360 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~-----------------------  360 (465)
                      +.+|..+|++++|+++| +|+|+|.|..|.+||+..|.+++.+....+|+.++|+|.                       
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~  140 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK  140 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence            77899999999999986 899999999999999999999999887777777777762                       


Q ss_pred             -----------------------CCCEEEEEeCCCcEEEEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEEcCCcE
Q 012367          361 -----------------------DDNYFISGSIDGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTC  415 (465)
Q Consensus       361 -----------------------~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v  415 (465)
                                             .|+|+++|...|.+.++|..+.+++.....  ...|..+-++-.|+.|++-+.|..|
T Consensus       141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvI  220 (405)
T KOG1273|consen  141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVI  220 (405)
T ss_pred             eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceE
Confidence                                   356999999999999999999888874432  3678899999999999999999999


Q ss_pred             EEEEec
Q 012367          416 HFYKAS  421 (465)
Q Consensus       416 ~iwd~~  421 (465)
                      |.|++.
T Consensus       221 R~ye~~  226 (405)
T KOG1273|consen  221 RTYEIS  226 (405)
T ss_pred             EEEehh
Confidence            999987

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.4e-16  Score=153.25  Aligned_cols=196  Identities=18%  Similarity=0.223  Sum_probs=155.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      -.++|.|++-+|+|.||+.|+..|.|.+|.+.++.                                             
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---------------------------------------------  114 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---------------------------------------------  114 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecccc---------------------------------------------
Confidence            46789999999999999999999999999999863                                             


Q ss_pred             cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC---------CCeEeEEe-cCCCceEEEEEccC-CCCEEEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVF-DHHNYVTCVQFNPI-DDNYFISG  368 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~---------~~~~l~~~-~h~~~V~~i~fsp~-~~~~l~sg  368 (465)
                      .+..+.+|-..|+|+.|+.++ +++|||.||.|.+|.+-         +-.++..| .|.-+|+.+...+. ...+++|+
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence            355567899999999999876 99999999999999862         33567777 47779999988773 45689999


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-----EeeecCc----cccc
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----KVDFHDR----KKTS  439 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-----~~~~~~~----~~~~  439 (465)
                      |.|.++++||+..+.++........+.+++.+|.++.+++|+.+|.|.+.++....-+..     ....++.    ...+
T Consensus       195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH  274 (476)
T ss_pred             cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence            999999999999999998888899999999999999999999999999888764431110     0001110    1112


Q ss_pred             C--CceeeEEEeecC------Cccc-eeeee
Q 012367          440 G--NKITGIQGRISK------NYDN-FRRFQ  461 (465)
Q Consensus       440 ~--~~It~~~f~p~g------s~d~-~~~~~  461 (465)
                      .  +.||.++++.+|      ..|+ +.+|+
T Consensus       275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  275 ENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             cCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            2  589999988874      4455 55554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.5e-16  Score=161.19  Aligned_cols=230  Identities=20%  Similarity=0.349  Sum_probs=162.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce--eee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV--FQI  297 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  297 (465)
                      +|++.-+.|+|.|+|.+|+|++.||.|++|+..............+       .....++............+.+  +.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g-------~~v~~ia~~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG-------ELVSSIACYSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC-------ceeEEEeecccceEEeeccceEEEeeC
Confidence            8999999999999999999999999999999765421111110000       0011111111111111111111  222


Q ss_pred             c-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          298 E-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       298 ~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                      . ...-..+.-.+-++.+++++.+| +++.||.|-.|++-++.+....+.+ +|..+|.++.|+| .+++||+.+.||.|
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v  162 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKV  162 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceE
Confidence            1 11222333456789999999775 8999999999999999988877777 6999999999999 99999999999999


Q ss_pred             EEEeCCCCeEEecc-c--------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          375 RIWGVCEKRVVDWA-D--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       375 ~iwd~~~~~~~~~~-~--------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      +|||+.++.+.... +        ....+..++|+|+|..+++.+.|+.|.+|+..+...+..   +..+..  ...++.
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~~~~--ss~~~~  237 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRDKLS--SSKFSD  237 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---eccccc--ccceEE
Confidence            99999988755321 1        245577899999999999999999999999998877544   222211  133999


Q ss_pred             EEEeecCCccc-------eeeeec
Q 012367          446 IQGRISKNYDN-------FRRFQT  462 (465)
Q Consensus       446 ~~f~p~gs~d~-------~~~~~~  462 (465)
                      ++|+|.|.|-.       +.+|++
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEec
Confidence            99999999842       566654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.72  E-value=8.3e-17  Score=154.30  Aligned_cols=174  Identities=21%  Similarity=0.372  Sum_probs=138.3

Q ss_pred             cccccccchhhhccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCC
Q 012367          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (465)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (465)
                      +++..+...+.++-|.+.|++++|+|...  ++|+|..-|.|-+||+.+...                            
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------------------------  222 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------------------------  222 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------------------------
Confidence            34455666778888999999999999654  899999999999999963211                            


Q ss_pred             ceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe---------------------
Q 012367          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ---------------------  341 (465)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~---------------------  341 (465)
                                   ....+..+..|.++|.+|.|+|.+  .+++.|.||+|++-|+..+.                     
T Consensus       223 -------------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~  289 (498)
T KOG4328|consen  223 -------------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA  289 (498)
T ss_pred             -------------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence                         012244566788899999998853  88899999999988865321                     


Q ss_pred             ------------EeEEe-------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-----eEEecccCC
Q 012367          342 ------------CLNVF-------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-----RVVDWADVR  391 (465)
Q Consensus       342 ------------~l~~~-------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~-----~~~~~~~~~  391 (465)
                                  ....+             -|...|..++++|....+|+|+|.|++++|||++.-     ..+....|.
T Consensus       290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr  369 (498)
T KOG4328|consen  290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR  369 (498)
T ss_pred             CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence                        00111             156679999999999999999999999999999752     246678899


Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ..|.++.|+|+|-.|++.+.|..|+|||..
T Consensus       370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            999999999998889999999999999985

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=9.7e-16  Score=140.47  Aligned_cols=239  Identities=23%  Similarity=0.318  Sum_probs=153.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee----eeeeecCCCCcccccCCCeEEeccC--CCCceeEecCC
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----SCKSFTDDGGFGSNAKEGKIKFGKK--KSSHVPVVIPD  292 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  292 (465)
                      .+|.+-|+++.|.+.|+.+|||+.|++|+|||......    ........+.+      ..+.....  +...+.+....
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si------~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSI------WRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcE------EEEEecCccccceEEEEecCC
Confidence            48999999999999999999999999999999754321    11111111111      01111111  01111111111


Q ss_pred             ceeeecC------------CcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCC------eEeEEec----
Q 012367          293 EVFQIEE------------SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCN------QCLNVFD----  347 (465)
Q Consensus       293 ~~~~~~~------------~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~------~~l~~~~----  347 (465)
                      .+-..++            ....++....+.|+++.|.|.  | +|++++.||++|||+.-..      .....+.    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            1111111            123455566789999999995  3 7999999999999987543      2223333    


Q ss_pred             ----CCCceEEEEEccC--CCCEEEEEeCC-----CcEEEEeCCCC--e---EEecccCCCCeEEEEEeeCC----CEEE
Q 012367          348 ----HHNYVTCVQFNPI--DDNYFISGSID-----GKVRIWGVCEK--R---VVDWADVRDVISAICYIPDG----KGFI  407 (465)
Q Consensus       348 ----h~~~V~~i~fsp~--~~~~l~sgs~D-----g~I~iwd~~~~--~---~~~~~~~~~~V~sv~~spdg----~~l~  407 (465)
                          +.....|+.|+|.  ...+|+.|+.+     +.++||.....  +   +..+.+|...|++++|.|+-    ..|+
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence                5667889999983  35688888865     48999987542  2   23477899999999999953    5799


Q ss_pred             EEEcCCcEEEEEecC----------------CceeeeEeeecCcccc----cCCceeeEEEeecCCccceeeeecCC
Q 012367          408 VGSITGTCHFYKASG----------------NDLKLEKVDFHDRKKT----SGNKITGIQGRISKNYDNFRRFQTPY  464 (465)
Q Consensus       408 sgs~dG~v~iwd~~~----------------~~~~~~~~~~~~~~~~----~~~~It~~~f~p~gs~d~~~~~~~p~  464 (465)
                      +++.|| |+||.+..                .+++++.+...+....    -.-.++|.-++.+|....+|+|...|
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            999999 99999984                1233333321111110    11345666777778888899998776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=8.1e-16  Score=158.52  Aligned_cols=188  Identities=16%  Similarity=0.246  Sum_probs=150.0

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .|.--+-++++++|+-+|+++|.||.|-.|++-++...                                          
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------------------------------------------  128 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------------------------------------------  128 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------------------------------------------
Confidence            34445678999999999999999999999999988753                                          


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---------CCCceEEEEEccCCCCEEE
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---------h~~~V~~i~fsp~~~~~l~  366 (465)
                         .....+.+|.++|+++.++|.+ +|++++.||+|++||+.++.+...+.         ....+..++|+| ++..|+
T Consensus       129 ---s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la  204 (933)
T KOG1274|consen  129 ---SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLA  204 (933)
T ss_pred             ---chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEE
Confidence               3466788999999999999975 89999999999999999988777663         234577899999 766677


Q ss_pred             EEeCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367          367 SGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I  443 (465)
                      ..+.|+.|++|+..+.....   ...+...+..+.|+|.|++||+++.||.|.|||+.+-..       |.    ....|
T Consensus       205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~~----~~~~V  273 (933)
T KOG1274|consen  205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------HE----FKRAV  273 (933)
T ss_pred             eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------cc----cccee
Confidence            77789999999998866543   333555599999999999999999999999999987111       11    23568


Q ss_pred             eeEEEeecCCccceeeee
Q 012367          444 TGIQGRISKNYDNFRRFQ  461 (465)
Q Consensus       444 t~~~f~p~gs~d~~~~~~  461 (465)
                      +.+.|.|++.--++.-+.
T Consensus       274 c~~aw~p~~n~it~~~~~  291 (933)
T KOG1274|consen  274 CCEAWKPNANAITLITAL  291 (933)
T ss_pred             EEEecCCCCCeeEEEeec
Confidence            888888876665544443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3e-15  Score=137.93  Aligned_cols=211  Identities=17%  Similarity=0.272  Sum_probs=150.3

Q ss_pred             ccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCC
Q 012367          204 KKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS  283 (465)
Q Consensus       204 ~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (465)
                      -+.+.+..-+..+-+.||+..|++|+.+|-+..++|++.|++|++||+....+.............-...+.+.......
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence            34555555566778899999999999999999999999999999999996655544433333322222222222111111


Q ss_pred             CceeEecCCceeee---cCCcceeee---ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCC---ce
Q 012367          284 SHVPVVIPDEVFQI---EESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN---YV  352 (465)
Q Consensus       284 ~~~~~~~~~~~~~~---~~~~~~~~~---gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~---~V  352 (465)
                      ..+      ++|++   ...|..++.   +-....+.|.|+|+| +++.+...+.+.+.|.-+|..+..|. +..   --
T Consensus       162 ~~I------kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~  235 (311)
T KOG1446|consen  162 ELI------KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP  235 (311)
T ss_pred             CeE------EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence            111      11222   234555443   336788999999987 77788888999999999999888884 222   22


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-ccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       353 ~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      ...+|.| +++++++|+.||+|.+|++.++..+. +.+ +...+.++.|+|...+++++  +..+-+|=....
T Consensus       236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence            5788999 99999999999999999999987765 666 68889999999986666655  556778865543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.69  E-value=4.4e-16  Score=141.85  Aligned_cols=164  Identities=16%  Similarity=0.297  Sum_probs=133.3

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      .+|+-.|.++.|-| |.-++.|+|-|.+++|||..+.+....+                                     
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F-------------------------------------  140 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF-------------------------------------  140 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe-------------------------------------
Confidence            47999999999999 4448999999999999999885432111                                     


Q ss_pred             cCCcceeeeccccceEEEEecCC----CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          298 EESPLQELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~----~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                               .-.+.|.+-+|+|=    .++++|..|-.|++-|+.+|.+-+.+ +|.+.|.++.|+|..+-.|++|+.||
T Consensus       141 ---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg  211 (397)
T KOG4283|consen  141 ---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG  211 (397)
T ss_pred             ---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence                     12345556667662    37888889999999999999999999 69999999999997777899999999


Q ss_pred             cEEEEeCCC--CeEEe--------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          373 KVRIWGVCE--KRVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       373 ~I~iwd~~~--~~~~~--------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .||+||++.  +....              -..|.+.|+.+||+.+|.++++++.|..+++|+...+.-.+.
T Consensus       212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence            999999964  22221              234778899999999999999999999999999987765443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.1e-16  Score=147.55  Aligned_cols=204  Identities=21%  Similarity=0.298  Sum_probs=157.1

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ..++.+.+.+|.|.|++|.||.++++||+||.|..+++|++.......                                
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--------------------------------   92 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--------------------------------   92 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------------------------------
Confidence            445667888999999999999999999999999999999987531110                                


Q ss_pred             CCceeeecCCcceeee-ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCC---ceEEEEEccCCCCEE
Q 012367          291 PDEVFQIEESPLQELH-GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYF  365 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~---~V~~i~fsp~~~~~l  365 (465)
                             ..+|+.... .|...|.|++|.-. .+|++|..+++|.+.|+.+.+.+.++.|.+   .|+.+..+| ..+.|
T Consensus        93 -------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~  164 (609)
T KOG4227|consen   93 -------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTL  164 (609)
T ss_pred             -------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceE
Confidence                   124454443 35689999999865 489999999999999999999999998776   899999999 68999


Q ss_pred             EEEeCCCcEEEEeCCCCe----EEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC
Q 012367          366 ISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~  440 (465)
                      ++.+.++.|.+||.+..+    ++..........++-|+|- ...|++.+..|-+-+||++....++.+...........
T Consensus       165 ~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~  244 (609)
T KOG4227|consen  165 IVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN  244 (609)
T ss_pred             EEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence            999999999999998644    4445556677889999995 46788899999999999986655443221111111112


Q ss_pred             CceeeEEEeecCCc
Q 012367          441 NKITGIQGRISKNY  454 (465)
Q Consensus       441 ~~It~~~f~p~gs~  454 (465)
                      ..-.++.|+|+|+.
T Consensus       245 ~~~M~~~~~~~G~Q  258 (609)
T KOG4227|consen  245 TEWMGSLWSPSGNQ  258 (609)
T ss_pred             hhhhheeeCCCCCe
Confidence            33456777777754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=4e-15  Score=136.57  Aligned_cols=213  Identities=18%  Similarity=0.288  Sum_probs=158.0

Q ss_pred             hhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec
Q 012367          200 KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  279 (465)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (465)
                      |...-+..++....+.+.+ .|.++|.+++|.++ ..+++|+.||.|+.+|+.++.                        
T Consensus        33 WDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~------------------------   86 (323)
T KOG1036|consen   33 WDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN------------------------   86 (323)
T ss_pred             ccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc------------------------
Confidence            3333333444444444444 69999999999974 579999999999999998742                        


Q ss_pred             cCCCCceeEecCCceeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEc
Q 012367          280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN  358 (465)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fs  358 (465)
                                            ...+..|...|.||..++ .+.+++||.|++|++||.+...+...+.....|.|+.. 
T Consensus        87 ----------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v-  143 (323)
T KOG1036|consen   87 ----------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV-  143 (323)
T ss_pred             ----------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec-
Confidence                                  234456999999999997 47999999999999999998878888888889999988 


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc-eeeeEeee--
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDF--  432 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~-~~~~~~~~--  432 (465)
                        .++.|+.|+.|..|.+||+++.....   -...+-.+++|++-|++..+++++.+|+|.+=.++... .+.....+  
T Consensus       144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             --cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence              67899999999999999999865443   34456779999999999999999999999876665541 11112222  


Q ss_pred             cCccc---ccCCceeeEEEeec------CCccceeeeecC
Q 012367          433 HDRKK---TSGNKITGIQGRIS------KNYDNFRRFQTP  463 (465)
Q Consensus       433 ~~~~~---~~~~~It~~~f~p~------gs~d~~~~~~~p  463 (465)
                      |....   ....+|.++.|+|-      |.-|.+...|.+
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence            22111   12467888988885      444555444444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.8e-15  Score=144.00  Aligned_cols=231  Identities=17%  Similarity=0.263  Sum_probs=159.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee--eeeecCCCCcccccCCCeEEeccCCCCceeEecCC---ce
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS--CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD---EV  294 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  294 (465)
                      .-.+.|++|.|||....|++||.||+++||.+......  ........+      .....+...+...+....-.   ..
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fP------i~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFP------IQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCc------cceeeecCCCceEEEecccceEEEE
Confidence            34678999999999999999999999999998753221  111111111      11111211111111111000   12


Q ss_pred             eeec---CCcceeeeccc-cceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          295 FQIE---ESPLQELHGHK-GDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       295 ~~~~---~~~~~~~~gh~-~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                      |++.   ..++..+.|+. ..+.....+++ ++|+..+..|.|.|....++..+..+...+.|..++|+. ++..|++.+
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~  363 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASG  363 (514)
T ss_pred             eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEc
Confidence            2222   23344455554 34556777776 599999999999999999999999999999999999998 889999988


Q ss_pred             CCCcEEEEeCCCCeEEecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-----eeeEeeecCcccccCCc
Q 012367          370 IDGKVRIWGVCEKRVVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDL-----KLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~  442 (465)
                      .+|.|.+||++...++......+  .-+++|.+++|.+||+|+..|.|.|||..+...     +...+.      .-...
T Consensus       364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d------NLtt~  437 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD------NLTTA  437 (514)
T ss_pred             CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh------hhhee
Confidence            99999999999988776333333  347788889999999999999999999653221     111111      12357


Q ss_pred             eeeEEEeecCC---------ccceeeeecC
Q 012367          443 ITGIQGRISKN---------YDNFRRFQTP  463 (465)
Q Consensus       443 It~~~f~p~gs---------~d~~~~~~~p  463 (465)
                      |++++|++++.         .+.+|++..|
T Consensus       438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvP  467 (514)
T KOG2055|consen  438 ITSLQFNHDAQILAIASRVKKNALRLVHVP  467 (514)
T ss_pred             eeeeeeCcchhhhhhhhhccccceEEEecc
Confidence            99999999854         3558898888

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.68  E-value=1.1e-15  Score=156.09  Aligned_cols=185  Identities=16%  Similarity=0.211  Sum_probs=158.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      ...+++++.+++|++.+.|+..|+|-+|++.++-....+                                         
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-----------------------------------------  486 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-----------------------------------------  486 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-----------------------------------------
Confidence            377999999999999999999999999999875332111                                         


Q ss_pred             ceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          302 LQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                       ..-..|.++|++++...- ..++|++.+|.++.||......+..+.-...++++..+. ....++.+..|-.|+++|..
T Consensus       487 -~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~  564 (910)
T KOG1539|consen  487 -GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDFSIRVVDVV  564 (910)
T ss_pred             -ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCceeEEEEEch
Confidence             011369999999999764 589999999999999999999899998888999999998 88889999999999999999


Q ss_pred             CCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccce
Q 012367          381 EKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNF  457 (465)
Q Consensus       381 ~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~  457 (465)
                      +.++++ +.+|.+.|++++|+|||++|++++.|++|++||+.++.+. ..+.+       .+..+++.|+|+|.|..+
T Consensus       565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI-D~~~v-------d~~~~sls~SPngD~LAT  634 (910)
T KOG1539|consen  565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-DGLLV-------DSPCTSLSFSPNGDFLAT  634 (910)
T ss_pred             hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee-eeEec-------CCcceeeEECCCCCEEEE
Confidence            999887 7889999999999999999999999999999999988762 22222       257899999999998653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=7.4e-16  Score=151.38  Aligned_cols=201  Identities=21%  Similarity=0.351  Sum_probs=150.9

Q ss_pred             CCcchhhHHhhcccc-ccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          191 KPKANKMEVKQNKKK-CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       191 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      ......+++|.-.+. ...-..+.+..++.+|.++|.|+++.+++.+++|||.||+|+.|++....-..           
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~-----------  380 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD-----------  380 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc-----------
Confidence            345566666655221 11223455667889999999999999999999999999999999986311100           


Q ss_pred             ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeE------
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQC------  342 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~------  342 (465)
                                             ..+. .......+.||++.|+.+++|+. ..|++|+.||||++|+......      
T Consensus       381 -----------------------ds~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~  436 (577)
T KOG0642|consen  381 -----------------------DSYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP  436 (577)
T ss_pred             -----------------------cccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCc
Confidence                                   0000 01124567799999999999975 5799999999999998754332      


Q ss_pred             --------------------------------------eEEec--------CCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          343 --------------------------------------LNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       343 --------------------------------------l~~~~--------h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                                                            +..+.        ....+.-+.++| ...+.+++..|+.|++
T Consensus       437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRF  515 (577)
T ss_pred             cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceec
Confidence                                                  00010        112356777888 7789999999999999


Q ss_pred             EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      +|..++.++. ...|...++++++.|+|-+|++|+.||.+++|.+......+
T Consensus       516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             ccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            9999998886 77899999999999999999999999999999987654443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.66  E-value=1.8e-15  Score=151.85  Aligned_cols=201  Identities=19%  Similarity=0.328  Sum_probs=144.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc---------------ccccCCCeEEeccC---
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---------------GSNAKEGKIKFGKK---  281 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~---  281 (465)
                      +-.-.|++++.||+|++||+|..-|+++||++.+....+....+...+               .+......+.+...   
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            456679999999999999999999999999998755444333322221               11111221111110   


Q ss_pred             ----------CCCceeEecC--C-------------ceeeecC--Ccceeeecc-----ccceEEEEecCC-CEEEEEeC
Q 012367          282 ----------KSSHVPVVIP--D-------------EVFQIEE--SPLQELHGH-----KGDVLDLAWSNS-NYLLSCSM  328 (465)
Q Consensus       282 ----------~~~~~~~~~~--~-------------~~~~~~~--~~~~~~~gh-----~~~V~~l~~s~~-~~l~s~s~  328 (465)
                                ......+...  +             ..|....  .....+..|     ...+.+|+..|. +++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence                      0111111110  0             0111110  001111112     246778888886 68999999


Q ss_pred             CCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCC
Q 012367          329 DKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG  403 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg  403 (465)
                      |+.|+|||+.+++..+.|+    |.+....+...| .+.|+++.+.|.++.++|+.+++++. ..+|...|+.+.|.+|.
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC  695 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence            9999999999999999994    667888999999 99999999999999999999998875 88999999999999999


Q ss_pred             CEEEEEEcCCcEEEEEec
Q 012367          404 KGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       404 ~~l~sgs~dG~v~iwd~~  421 (465)
                      +.|++.+.||+|.+|.+.
T Consensus       696 kHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  696 KHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hhheeecCCceEEEEECc
Confidence            999999999999999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.1e-15  Score=145.78  Aligned_cols=177  Identities=25%  Similarity=0.373  Sum_probs=136.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceee
Q 012367          226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  305 (465)
Q Consensus       226 ~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (465)
                      .+++|+++|..||+|+.||++|||++...                                             ..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------------------------------------------~t~l~e  182 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------------------------------------------LTILEE  182 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc---------------------------------------------hhhhhh
Confidence            78999999999999999999999998763                                             234455


Q ss_pred             eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCC-----CEEEEEeCCCcEEE
Q 012367          306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD-----NYFISGSIDGKVRI  376 (465)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~-----~~l~sgs~Dg~I~i  376 (465)
                      ..|.+.|.+|.|+|++ +|++-+.| ..+||++.++.++....   .......+.|+. ++     ..++.-...+.|+.
T Consensus       183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence            6799999999999998 88899999 99999999997776664   233456777876 55     33344445567888


Q ss_pred             EeCCCC------eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367          377 WGVCEK------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       377 wd~~~~------~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      ||+...      +..........|++++.++||++++.|+.||.|-||+..+-+..+.      -++.|...||+++|+|
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~------vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY------VKEAHLGFVTGLTFSP  334 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe------ehhhheeeeeeEEEcC
Confidence            776431      2222344566899999999999999999999999999876544322      2344667999999999


Q ss_pred             cCCcc
Q 012367          451 SKNYD  455 (465)
Q Consensus       451 ~gs~d  455 (465)
                      +..|.
T Consensus       335 dsr~~  339 (398)
T KOG0771|consen  335 DSRYL  339 (398)
T ss_pred             CcCcc
Confidence            97764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.2e-14  Score=143.68  Aligned_cols=197  Identities=15%  Similarity=0.272  Sum_probs=154.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      -..+|++|+|+.+.+.||.+-.||+|-||++...-.                                            
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~--------------------------------------------   59 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF--------------------------------------------   59 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCce--------------------------------------------
Confidence            356799999999999999999999999999986311                                            


Q ss_pred             cceeeecc-ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          301 PLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       301 ~~~~~~gh-~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      ....+.|+ ...|.+++|++++.|.|.+.+|+|.-||+.+.+.+..+. ..+.|++++.+| .+..++.|+.||.+..++
T Consensus        60 ~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEe
Confidence            12233444 468999999999999999999999999999999998886 667999999999 889999999999888888


Q ss_pred             CCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEeecC--
Q 012367          379 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRISK--  452 (465)
Q Consensus       379 ~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~g--  452 (465)
                      ...+.+..   +...++.|.+++|+|++..+++|+.||.|++||+..+.-... ...+.+-.+....-+=+++|.-++  
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI  218 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI  218 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcE
Confidence            88887664   444568999999999999999999999999999987765442 333333333233445566665443  


Q ss_pred             ----Cccceeeeec
Q 012367          453 ----NYDNFRRFQT  462 (465)
Q Consensus       453 ----s~d~~~~~~~  462 (465)
                          +-.++.+|+-
T Consensus       219 ~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  219 ASGDSAGTVTFWDS  232 (691)
T ss_pred             EEecCCceEEEEcc
Confidence                3344666653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.64  E-value=1.4e-14  Score=131.78  Aligned_cols=210  Identities=17%  Similarity=0.278  Sum_probs=140.7

Q ss_pred             ccccchhhhc-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee-eeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          210 TALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       210 ~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      .++.+...|. .|-+.|.||.|.|++..||+-. |..|.+|++.+.... .......... .......-...........
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-MRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-ccceecccccCCCCccceE
Confidence            3344444554 6677999999999999998877 788999999876552 2211111110 0000000001111111111


Q ss_pred             Ee-cCCce--eeec--CCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEc
Q 012367          288 VV-IPDEV--FQIE--ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFN  358 (465)
Q Consensus       288 ~~-~~~~~--~~~~--~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fs  358 (465)
                      .. ....+  |+..  .+....-.+|...|.++.|+|+.  +|+||+.||.|++||.+.. .++..+ .|..+|+++.|+
T Consensus       188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence            11 11111  1211  12223345788899999999974  8999999999999999864 456666 699999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCC------------------------------CeEEecccCCCCeEEEEEee-CCCEEE
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCE------------------------------KRVVDWADVRDVISAICYIP-DGKGFI  407 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~------------------------------~~~~~~~~~~~~V~sv~~sp-dg~~l~  407 (465)
                      |..+.++++||.|..|.+|-...                              +.+.++..|.+.|.+++|+. |.=.++
T Consensus       268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA  347 (370)
T KOG1007|consen  268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA  347 (370)
T ss_pred             CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence            99999999999999999995421                              22335677999999999997 555688


Q ss_pred             EEEcCCcEEEEEec
Q 012367          408 VGSITGTCHFYKAS  421 (465)
Q Consensus       408 sgs~dG~v~iwd~~  421 (465)
                      +-++||++.|=.+.
T Consensus       348 SLSYDGRviIs~V~  361 (370)
T KOG1007|consen  348 SLSYDGRVIISSVP  361 (370)
T ss_pred             EeccCceEEeecCC
Confidence            89999999876554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.64  E-value=4.5e-14  Score=136.48  Aligned_cols=190  Identities=15%  Similarity=0.149  Sum_probs=132.9

Q ss_pred             hhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +.+.+|.. +.+++|+|+|+.+ ++++.|+.|++||+.++...                                     
T Consensus        25 ~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------------------------------------   66 (300)
T TIGR03866        25 RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------------------------------------   66 (300)
T ss_pred             EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------------------------------------
Confidence            44444544 6789999999976 67788999999998764321                                     


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                              ..+..+. .+..++|+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++.++++++.++
T Consensus        67 --------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~  136 (300)
T TIGR03866        67 --------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETT  136 (300)
T ss_pred             --------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCC
Confidence                    1122222 24567888875 44 455678999999999998888887666788999999 999999988765


Q ss_pred             -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeeecCccc-ccCCceeeEEEe
Q 012367          373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKITGIQGR  449 (465)
Q Consensus       373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~It~~~f~  449 (465)
                       .+.+||..++...........+.+++|+|+|+.|++++ .+|.|++||+.+++... .+..+.... .......++.|+
T Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s  215 (300)
T TIGR03866       137 NMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLT  215 (300)
T ss_pred             CeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEEC
Confidence             57788998887765434445678899999999886554 58999999999875432 222221100 011234467777


Q ss_pred             ecCCc
Q 012367          450 ISKNY  454 (465)
Q Consensus       450 p~gs~  454 (465)
                      |++.+
T Consensus       216 ~dg~~  220 (300)
T TIGR03866       216 KDGKT  220 (300)
T ss_pred             CCCCE
Confidence            77654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.63  E-value=6e-15  Score=141.66  Aligned_cols=226  Identities=18%  Similarity=0.295  Sum_probs=148.3

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCC--
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGG--  266 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~--  266 (465)
                      ..++.+.+-+|.-.....+...+   ..+..|.++|.+|.|+|... .+++.|.||+|+.=|+++......+......  
T Consensus       205 ~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~  281 (498)
T KOG4328|consen  205 VGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIW  281 (498)
T ss_pred             EccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcccee
Confidence            34455555555443222222222   34568999999999999654 8999999999999999875432222211000  


Q ss_pred             c---ccccCCCeEEeccCCCCceeEecCCceeee--cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCC
Q 012367          267 F---GSNAKEGKIKFGKKKSSHVPVVIPDEVFQI--EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC  339 (465)
Q Consensus       267 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~  339 (465)
                      +   ........+.++..-+ ..      .+++.  .+.....+.-|...|.+++++|-.  +++|||.|++++|||++.
T Consensus       282 fs~~d~~~e~~~vl~~~~~G-~f------~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  282 FSSLDFSAESRSVLFGDNVG-NF------NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             eeeccccCCCccEEEeeccc-ce------EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence            0   0011111111111111 00      12222  223344556788899999999953  899999999999999975


Q ss_pred             Ce-----EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC----CCeEEecccCC----CC--eEEEEEeeCCC
Q 012367          340 NQ-----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC----EKRVVDWADVR----DV--ISAICYIPDGK  404 (465)
Q Consensus       340 ~~-----~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~----~~~~~~~~~~~----~~--V~sv~~spdg~  404 (465)
                      -.     .+..+.|...|.++.|+|.+++ |+|.+.|..|||||..    .-.......|.    .+  ..-..|.|+..
T Consensus       355 l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~  433 (498)
T KOG4328|consen  355 LRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN  433 (498)
T ss_pred             hcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence            43     3556689999999999995565 9999999999999983    22222222222    22  34467999999


Q ss_pred             EEEEEEcCCcEEEEEecCCcee
Q 012367          405 GFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       405 ~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      ++++|-.-..|-|||-.++++.
T Consensus       434 li~vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  434 LIVVGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             EEEEeccCcceeEEcCCCCEEe
Confidence            9999999999999999887753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.63  E-value=2.1e-15  Score=142.35  Aligned_cols=128  Identities=24%  Similarity=0.356  Sum_probs=113.0

Q ss_pred             eeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCe-------EeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          303 QELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~-------~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                      -.+.||+++|++++|+|  ++.++|||.|.+|+||++-.+.       ++..+ +|...|--++|+|.-.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34569999999999998  5699999999999999986543       23333 69999999999999999999999999


Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~  430 (465)
                      +|.||++.++..+....|.+.|.+++|+-||..|++++.|..|||||.+++++..+..
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence            9999999999877656699999999999999999999999999999999998876653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.63  E-value=2.9e-15  Score=152.95  Aligned_cols=155  Identities=23%  Similarity=0.416  Sum_probs=134.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .+|.++|+.++...-++.++|++.||.+++||..+.....                                        
T Consensus       490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----------------------------------------  529 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----------------------------------------  529 (910)
T ss_pred             ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----------------------------------------
Confidence            4899999999999889999999999999999998743211                                        


Q ss_pred             CCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          299 ESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                           .+. -...+.++..+. .+.++.+..|-.|+++|+.+.+.++.| +|.+.|++++|+| +|+++++++.|++||+
T Consensus       530 -----~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  530 -----SLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRT  602 (910)
T ss_pred             -----eec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEE
Confidence                 111 123455666664 368888999999999999999999999 5999999999999 9999999999999999


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-CcEEEEEe
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKA  420 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~  420 (465)
                      ||+.++.++.........+++.|+|+|.+||+...| .-|++|--
T Consensus       603 wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  603 WDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999999988899999999999999999999998 56889963

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.63  E-value=2.9e-15  Score=145.06  Aligned_cols=246  Identities=14%  Similarity=0.243  Sum_probs=179.6

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC----c
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----F  267 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~----~  267 (465)
                      ....-+|+|.-..+-..++- .. -....-...|+++++.|||+.|++||+-.+|.|||+...............    .
T Consensus       437 gGkgcVKVWdis~pg~k~Pv-sq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyA  514 (705)
T KOG0639|consen  437 GGKGCVKVWDISQPGNKSPV-SQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA  514 (705)
T ss_pred             cCCCeEEEeeccCCCCCCcc-cc-ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhh
Confidence            44556677755444222211 10 112234677999999999999999999999999999875443332222211    1


Q ss_pred             ccccCCCeEEeccCCCCceeEecCCceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE
Q 012367          268 GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV  345 (465)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~  345 (465)
                      .....+.++.+.....+.+.      +|++. ...++.|+||++.+.||.++++| .|.||+-|.+||-||++.+..+..
T Consensus       515 La~spDakvcFsccsdGnI~------vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq  588 (705)
T KOG0639|consen  515 LAISPDAKVCFSCCSDGNIA------VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ  588 (705)
T ss_pred             hhcCCccceeeeeccCCcEE------EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence            11222334444333333332      34442 34678899999999999999987 799999999999999999998888


Q ss_pred             ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          346 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       346 ~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ......|.++.++| .+.+++.|-..+.+-|..........+..|...|.++.|.+-|+++++.+.|..+..|.+.-+..
T Consensus       589 hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas  667 (705)
T KOG0639|consen  589 HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  667 (705)
T ss_pred             hhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc
Confidence            88888999999999 99999999999999999988887778888999999999999999999999999999999876644


Q ss_pred             eeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          426 KLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      .++.   .     -...|++..++.++.|
T Consensus       668 iFqs---k-----E~SsVlsCDIS~ddky  688 (705)
T KOG0639|consen  668 IFQS---K-----ESSSVLSCDISFDDKY  688 (705)
T ss_pred             eeec---c-----ccCcceeeeeccCceE
Confidence            3221   1     1245677766655433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.63  E-value=8.9e-15  Score=146.73  Aligned_cols=194  Identities=24%  Similarity=0.408  Sum_probs=148.4

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      ...+.|.||.-.|.|++.+|+|+++||+....     .|++|+..+.                                 
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---------------------------------  562 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---------------------------------  562 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---------------------------------
Confidence            34577889999999999999999999997643     5889988763                                 


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE-eE----EecCCCceEEEEEccCC
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LN----VFDHHNYVTCVQFNPID  361 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~-l~----~~~h~~~V~~i~fsp~~  361 (465)
                                  ..++.+.+|.-.|+.|+|+|++ +|+++|.|.++.||....... -.    .-.|..-|+++.|+| +
T Consensus       563 ------------~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-d  629 (764)
T KOG1063|consen  563 ------------LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-D  629 (764)
T ss_pred             ------------hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-c
Confidence                        3355788999999999999986 999999999999998854321 11    124888999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe--EE---ecccCCCCeEEEEEee-----CCCEEEEEEcCCcEEEEEecCCceeee--E
Q 012367          362 DNYFISGSIDGKVRIWGVCEKR--VV---DWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKASGNDLKLE--K  429 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~--~~---~~~~~~~~V~sv~~sp-----dg~~l~sgs~dG~v~iwd~~~~~~~~~--~  429 (465)
                      +.+|+|+|.|.+|++|.....+  .+   ....+...|++++|.|     .+..+++|...|.|.+|.......+..  .
T Consensus       630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~  709 (764)
T KOG1063|consen  630 EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT  709 (764)
T ss_pred             cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence            9999999999999999987762  22   2456889999999998     233789999999999999662222111  1


Q ss_pred             eee---cCcccccCCceeeEEEeecC
Q 012367          430 VDF---HDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       430 ~~~---~~~~~~~~~~It~~~f~p~g  452 (465)
                      +.+   -.....+...|+.+.|.|.-
T Consensus       710 ~~~~~~l~~~~~~~~aV~rl~w~p~~  735 (764)
T KOG1063|consen  710 FNLDTRLCATIGPDSAVNRLLWRPTC  735 (764)
T ss_pred             eeeccccccccChHHhhheeEecccc
Confidence            111   12234456778888888763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.62  E-value=8.1e-15  Score=135.53  Aligned_cols=186  Identities=24%  Similarity=0.403  Sum_probs=142.9

Q ss_pred             cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       220 ~H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .|......++|+-+    ..+||.||.-|.|+|.|+.+.+                                        
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----------------------------------------  126 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----------------------------------------  126 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----------------------------------------
Confidence            47777788888654    3489999999999999998743                                        


Q ss_pred             eecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEe
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                           ....+.||...|+.|.++|.+  +++++|.|.+||+|++++..|+..|+    |.+.|.++.|++ ++.+|++++
T Consensus       127 -----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG  200 (385)
T KOG1034|consen  127 -----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG  200 (385)
T ss_pred             -----hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccC
Confidence                 345677999999999999975  99999999999999999999999994    999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEE-----------------------e------cccCCCC---------------------------
Q 012367          370 IDGKVRIWGVCEKRVV-----------------------D------WADVRDV---------------------------  393 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~-----------------------~------~~~~~~~---------------------------  393 (465)
                      .|..|++|++...+..                       .      ..-|...                           
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgk  280 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGK  280 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecch
Confidence            9999999999732100                       0      0001111                           


Q ss_pred             ---------------------------eE--EEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          394 ---------------------------IS--AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       394 ---------------------------V~--sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                                                 |.  -.+|.|-++.||.|...|.|.+||++....+....-.+.   ..+..|.
T Consensus       281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s---~~~~tVR  357 (385)
T KOG1034|consen  281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS---KSGSTVR  357 (385)
T ss_pred             hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec---cccceee
Confidence                                       11  134556677899999999999999998877533111121   2456788


Q ss_pred             eEEEeecCCc
Q 012367          445 GIQGRISKNY  454 (465)
Q Consensus       445 ~~~f~p~gs~  454 (465)
                      ...|+-+|+.
T Consensus       358 Q~sfS~dgs~  367 (385)
T KOG1034|consen  358 QTSFSRDGSI  367 (385)
T ss_pred             eeeecccCcE
Confidence            8888888765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.9e-14  Score=137.14  Aligned_cols=238  Identities=14%  Similarity=0.206  Sum_probs=159.3

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      |.+.--.-+|.+.+|+|+|+ .++++|.-..+.+||+.+.+...........   ........+.......+.....+.+
T Consensus       251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e---~~~~e~FeVShd~~fia~~G~~G~I  327 (514)
T KOG2055|consen  251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE---EKSMERFEVSHDSNFIAIAGNNGHI  327 (514)
T ss_pred             eeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc---cchhheeEecCCCCeEEEcccCceE
Confidence            44444578899999999999 9999999999999999876543222111110   0011111111111111111111111


Q ss_pred             eee---cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCc--eEEEEEccCCCCEEEEE
Q 012367          295 FQI---EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISG  368 (465)
Q Consensus       295 ~~~---~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~--V~~i~fsp~~~~~l~sg  368 (465)
                      ..+   ....+..+. -.+.|.+++|+.++ .|++++.+|.|.+||+++..|++.|...+.  -+.+|.++ ++.|||+|
T Consensus       328 ~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~G  405 (514)
T KOG2055|consen  328 HLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATG  405 (514)
T ss_pred             Eeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEec
Confidence            111   112222222 45789999999765 788888999999999999999999965443  36777778 99999999


Q ss_pred             eCCCcEEEEeCCCC------eEE-ecccCCCCeEEEEEeeCCCEEEEEEc--CCcEEEEEecCCceeeeEeeecCccccc
Q 012367          369 SIDGKVRIWGVCEK------RVV-DWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (465)
Q Consensus       369 s~Dg~I~iwd~~~~------~~~-~~~~~~~~V~sv~~spdg~~l~sgs~--dG~v~iwd~~~~~~~~~~~~~~~~~~~~  439 (465)
                      |..|.|.|||..+.      +++ .+......|+++.|+||++.|+.+|.  +..+++-.+.+... +..+...   .+.
T Consensus       406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-FsNfP~~---n~~  481 (514)
T KOG2055|consen  406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-FSNFPTS---NTK  481 (514)
T ss_pred             cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-eccCCCC---CCc
Confidence            99999999997542      222 36667888999999999999988886  67888888776443 2233322   335


Q ss_pred             CCceeeEEEeecCCcc-------ceeeeec
Q 012367          440 GNKITGIQGRISKNYD-------NFRRFQT  462 (465)
Q Consensus       440 ~~~It~~~f~p~gs~d-------~~~~~~~  462 (465)
                      ...++++.|+|.++|-       ..++|..
T Consensus       482 vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ccceEEEEecCCCceEEeecCCCceeeEee
Confidence            6789999999988773       2566654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.5e-15  Score=146.93  Aligned_cols=170  Identities=21%  Similarity=0.387  Sum_probs=135.5

Q ss_pred             cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCce
Q 012367          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (465)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (465)
                      -.+..+...++|.||+|.|+|+.|+.+|.+|||||.|-.+.|||.-..                                
T Consensus        35 ~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------------------------------   82 (758)
T KOG1310|consen   35 TWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------------------------------   82 (758)
T ss_pred             HHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--------------------------------
Confidence            345567778999999999999999999999999999999999998643                                


Q ss_pred             eEecCCceeeecCCccee-eeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCC----------eEeEEe-cCCCc
Q 012367          287 PVVIPDEVFQIEESPLQE-LHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCN----------QCLNVF-DHHNY  351 (465)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~----------~~l~~~-~h~~~  351 (465)
                                   ++++. -.||...|-+++|-|   +.+++||+.|+.|+|+|+...          ...+.+ .|...
T Consensus        83 -------------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r  149 (758)
T KOG1310|consen   83 -------------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDR  149 (758)
T ss_pred             -------------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhh
Confidence                         23333 248999999999987   348999999999999999742          233334 38889


Q ss_pred             eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-----------ecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEE
Q 012367          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-----------DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYK  419 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-----------~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd  419 (465)
                      |..|+-.|...+.|.+++.||+|+-+|++.....           .....--...++..+|. ..+|++|+.|-..++||
T Consensus       150 VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  150 VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             hhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence            9999999966699999999999999999863211           11222234678889985 46899999999999999


Q ss_pred             ec
Q 012367          420 AS  421 (465)
Q Consensus       420 ~~  421 (465)
                      .+
T Consensus       230 ~R  231 (758)
T KOG1310|consen  230 RR  231 (758)
T ss_pred             hh
Confidence            54

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=1.5e-14  Score=133.41  Aligned_cols=190  Identities=19%  Similarity=0.315  Sum_probs=151.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      -..+|+|.+|++|++.+|.+-...-|.||.....+.                                          .+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~------------------------------------------w~   46 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL------------------------------------------WE   46 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC------------------------------------------ce
Confidence            467899999999999999999999999998875321                                          24


Q ss_pred             cceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCC-Ce---EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          301 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGC-NQ---CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~-~~---~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      +.+++..|...|+.++|+|. +.|++|+.|...+||.... +.   .+-.+.++..++||.|+| .++.|++||....|.
T Consensus        47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~is  125 (361)
T KOG1523|consen   47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLIS  125 (361)
T ss_pred             eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEE
Confidence            67888999999999999985 6999999999999999943 33   334447999999999999 999999999999999


Q ss_pred             EEeCCCCeEE-----ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec-------------CCceeeeEeeecCccc
Q 012367          376 IWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-------------GNDLKLEKVDFHDRKK  437 (465)
Q Consensus       376 iwd~~~~~~~-----~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~-------------~~~~~~~~~~~~~~~~  437 (465)
                      ||-+....--     ....+...|+++.|+|++-.|++|+.|+.+++|..-             +.++++-++...  ..
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~  203 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--AS  203 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hc
Confidence            9988765432     234577889999999999999999999999999753             122222211111  11


Q ss_pred             ccCCceeeEEEeecCCcc
Q 012367          438 TSGNKITGIQGRISKNYD  455 (465)
Q Consensus       438 ~~~~~It~~~f~p~gs~d  455 (465)
                      ..+..+.++.|+|+|.-.
T Consensus       204 ~~ggwvh~v~fs~sG~~l  221 (361)
T KOG1523|consen  204 SSGGWVHGVLFSPSGNRL  221 (361)
T ss_pred             cCCCceeeeEeCCCCCEe
Confidence            456899999999998643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.60  E-value=1.4e-14  Score=144.13  Aligned_cols=163  Identities=24%  Similarity=0.444  Sum_probs=128.4

Q ss_pred             EEEECCC---CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          227 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       227 ~l~fspd---g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      +..|++.   .+.||.+.+||.|.++|.....                                       |.++...+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~---------------------------------------fr~ee~~lk   94 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIV---------------------------------------FRLEERQLK   94 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhh---------------------------------------cchhhhhhc
Confidence            3667663   3489999999999999987531                                       122334466


Q ss_pred             eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE---ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~---~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      .+..|...|.++.|.|.. .|++++.|.++++||+.+..+...   ++|...|.++||.|.+...|++|+.||.|.|||+
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            677899999999999954 899999999999999999988776   4899999999999999999999999999999999


Q ss_pred             CCCe----------------------------EEecccCCCCeEE---EEEeeCCCEEEEEEc-CCcEEEEEecCCceee
Q 012367          380 CEKR----------------------------VVDWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL  427 (465)
Q Consensus       380 ~~~~----------------------------~~~~~~~~~~V~s---v~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~  427 (465)
                      +-..                            ...+..+...|.+   +.+..|...||+++. |+.|+|||++.+.-.+
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            6322                            0112333444555   556678889999888 9999999999776554


Q ss_pred             e
Q 012367          428 E  428 (465)
Q Consensus       428 ~  428 (465)
                      .
T Consensus       255 r  255 (720)
T KOG0321|consen  255 R  255 (720)
T ss_pred             c
Confidence            4

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=7.9e-15  Score=144.21  Aligned_cols=194  Identities=19%  Similarity=0.360  Sum_probs=148.7

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .++..|.+.|+.+.|+|....|++|+.||++++|++.......                                     
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~-------------------------------------  330 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA-------------------------------------  330 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc-------------------------------------
Confidence            3778899999999999999999999999999999994310000                                     


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC------Ce----EeEEe-cCCCceEEEEEccCCCC
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------NQ----CLNVF-DHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~------~~----~l~~~-~h~~~V~~i~fsp~~~~  363 (465)
                      ....+|+.+|.+|.++|.|+++.+.+ .+++|+.||+|+.|++..      ..    ....+ +|.+.|+.+++++ ..+
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~  409 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKD  409 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-ccc
Confidence            00236889999999999999998764 899999999999996531      11    12223 6999999999999 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEec--------------------------------------------c--------cCC
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVDW--------------------------------------------A--------DVR  391 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~~--------------------------------------------~--------~~~  391 (465)
                      .|++++.||+||+|+........+                                            .        ...
T Consensus       410 ~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~  489 (577)
T KOG0642|consen  410 RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY  489 (577)
T ss_pred             ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence            899999999999998744321000                                            0        001


Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ..+.-+.++|.+.+.+++..|+.|+++|..++++...       ...+...++++++.|+|-|
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s-------~~a~~~svtslai~~ng~~  545 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS-------MVAHKDSVTSLAIDPNGPY  545 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchh-------eeeccceecceeecCCCce
Confidence            2366788899999999999999999999998877433       2223467899999988655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.8e-14  Score=133.93  Aligned_cols=172  Identities=22%  Similarity=0.333  Sum_probs=134.7

Q ss_pred             ccccchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      ......+.+++|.+.++.|+|..  .+..+.+|+.||+||+||+......                              
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~------------------------------  107 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES------------------------------  107 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh------------------------------
Confidence            34455678889999999999987  4668999999999999999874322                              


Q ss_pred             EecCCceeeecCCcceeeeccc-cceEEEEec-CCCEEEEEeC----CCeEEEEeCCCCeE-eEEe--cCCCceEEEEEc
Q 012367          288 VVIPDEVFQIEESPLQELHGHK-GDVLDLAWS-NSNYLLSCSM----DKTVRMWQVGCNQC-LNVF--DHHNYVTCVQFN  358 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~s-~~~~l~s~s~----DgtV~lWD~~~~~~-l~~~--~h~~~V~~i~fs  358 (465)
                                   +...+.+|. .+-.+++.+ ..+.+++|..    |-.|.+||++..+. ++.+  .|.+.|++++|+
T Consensus       108 -------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH  174 (376)
T KOG1188|consen  108 -------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH  174 (376)
T ss_pred             -------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence                         122233343 355566665 3455555543    56799999998776 7766  499999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCC----eEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      |.+.++|+|||.||.|.|||+...    .+.....+...|..+.|..++ +.|.+-+..++..+|++..+.
T Consensus       175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            999999999999999999999654    244567788889999999877 568888999999999998765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.60  E-value=1e-14  Score=138.31  Aligned_cols=167  Identities=30%  Similarity=0.539  Sum_probs=126.1

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      -...|..|..+|+++.|+|+|..||||+.+|.|.+|........     ......                        .
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~d~e~------------------------~  107 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DADTEA------------------------D  107 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cccchh------------------------h
Confidence            34567899999999999999999999999999999987641110     000000                        0


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      ...-.....+.+.+|...|.+++|+|++ ++++++.|.++++||+..|+.+..+ .|..+|..++|.| ..+|+++-+.|
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d  186 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD  186 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence            0000012245677899999999999975 8999999999999999999999988 5999999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEeccc--------------------C----CCCeEEEEEeeCCCEEEEEE
Q 012367          372 GKVRIWGVCEKRVVDWAD--------------------V----RDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~--------------------~----~~~V~sv~~spdg~~l~sgs  410 (465)
                      ...+++.+...+++...+                    |    ..-...++|+|||..+++..
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            988888776544322111                    1    11245679999999998865

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.59  E-value=3.5e-13  Score=130.27  Aligned_cols=194  Identities=11%  Similarity=0.146  Sum_probs=123.0

Q ss_pred             EEEEEECCCCCEEEE-EeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEE-eccCCCCceeEecCCceeeecC-C
Q 012367          225 IWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIK-FGKKKSSHVPVVIPDEVFQIEE-S  300 (465)
Q Consensus       225 I~~l~fspdg~~LaS-gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~  300 (465)
                      +..++|+|+++.+++ ++.|+.|++||+.+............... .....+... ...........      +.... .
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~------~d~~~~~  148 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHF------IDTKTYE  148 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEE------EeCCCCe
Confidence            467899999997755 45689999999987655433321111100 001111111 11111001111      11111 1


Q ss_pred             cceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCC------C--ceEEEEEccCCCCEEEE-Ee
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH------N--YVTCVQFNPIDDNYFIS-GS  369 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~------~--~V~~i~fsp~~~~~l~s-gs  369 (465)
                      ..... .....+..++|+|++ +| +++..++.|++||+.+++++..+...      .  ....++|+| ++++++. .+
T Consensus       149 ~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~  226 (300)
T TIGR03866       149 IVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALG  226 (300)
T ss_pred             EEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcC
Confidence            11111 122345678999886 45 45556999999999999887766411      1  235688999 8887544 45


Q ss_pred             CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCcee
Q 012367          370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK  426 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~  426 (465)
                      .++.|.+||+.++++.....+...+.+++|+|+|+.|+++. .+|.|.+||+.+.+..
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            56789999999888776555566899999999999998874 5899999999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=1.2e-15  Score=155.45  Aligned_cols=119  Identities=32%  Similarity=0.633  Sum_probs=104.0

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ++..+.|.||..+|.|+.|...|.+++||+.|..|+||...+.                                     
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------------------------------------  222 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------------------------------------  222 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-------------------------------------
Confidence            4455778899999999999999999999999999999998764                                     


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                              .++....||.+.|++++.+..+ +++++|.|..|++|-+.++.++.++ +|.+.|++|+|+|     +.+.+
T Consensus       223 --------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss  289 (1113)
T KOG0644|consen  223 --------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSS  289 (1113)
T ss_pred             --------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCC
Confidence                    3456677999999999998765 7889999999999999999999888 6999999999999     23777


Q ss_pred             CCCcEEEEeCC
Q 012367          370 IDGKVRIWGVC  380 (465)
Q Consensus       370 ~Dg~I~iwd~~  380 (465)
                      .||++++||.+
T Consensus       290 ~dgt~~~wd~r  300 (1113)
T KOG0644|consen  290 DDGTCRIWDAR  300 (1113)
T ss_pred             CCCceEecccc
Confidence            88999999876

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=6.1e-15  Score=155.58  Aligned_cols=188  Identities=15%  Similarity=0.248  Sum_probs=147.2

Q ss_pred             hhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          215 SQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..++.-|+|+|.++.|++... +||+|+.||.|.|||+.+.......                                 
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~---------------------------------  155 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP---------------------------------  155 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC---------------------------------
Confidence            355678999999999999655 9999999999999999873221100                                 


Q ss_pred             eeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCC--ceEEEEEccCCCCEEEEE
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN--YVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~--~V~~i~fsp~~~~~l~sg  368 (465)
                              -  -..-.+.|.+++|+..  ..|++++.+|.+.|||++..+.+-.+. +..  .+..++|+|.+...++++
T Consensus       156 --------~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  156 --------G--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA  225 (1049)
T ss_pred             --------C--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence                    0  1124578999999964  489999999999999999888777774 333  478999999777778888


Q ss_pred             eCCC---cEEEEeCCCC--eEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          369 SIDG---KVRIWGVCEK--RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       369 s~Dg---~I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +.|.   .|.+||+|..  .+..+.+|...|.++.|.+.+ .+|++++.|+.|.+|+..+++... .+..      .++.
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~-~~p~------~~nW  298 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG-ELPA------QGNW  298 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee-ecCC------CCcc
Confidence            7764   6999999853  333467899999999999966 899999999999999999976643 2222      3478


Q ss_pred             eeeEEEeecC
Q 012367          443 ITGIQGRISK  452 (465)
Q Consensus       443 It~~~f~p~g  452 (465)
                      +..++|+|..
T Consensus       299 ~fdv~w~pr~  308 (1049)
T KOG0307|consen  299 CFDVQWCPRN  308 (1049)
T ss_pred             eeeeeecCCC
Confidence            8999999863

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.59  E-value=1e-13  Score=134.71  Aligned_cols=174  Identities=20%  Similarity=0.366  Sum_probs=139.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      .-|.||+|.++|. ++||..+|.|.||+..+...                                             .
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---------------------------------------------~  280 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI---------------------------------------------S  280 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE---------------------------------------------E
Confidence            5699999999996 88999999999999865322                                             2


Q ss_pred             eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCC-----------------------------------------CCe
Q 012367          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-----------------------------------------CNQ  341 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~-----------------------------------------~~~  341 (465)
                      +....|.+.|.+++...+|.|+||+.|..|.+||-.                                         ++-
T Consensus       281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence            222378999999998888989999999999999821                                         111


Q ss_pred             EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       342 ~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      .+..+.|....+.++.+| +.+.++|++.|+.+++|+  ..++........++.++.|+|.| .+++|+..|...+.|..
T Consensus       361 ~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e  436 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE  436 (626)
T ss_pred             eEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence            223345888899999999 999999999999999999  56666666677889999999999 99999999999999998


Q ss_pred             CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +..+.....+        ..+|+-+.|+|+|.+
T Consensus       437 ~~~lv~~~~d--------~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  437 TQDLVTIHTD--------NEQLSVVRYSPDGAF  461 (626)
T ss_pred             cceeEEEEec--------CCceEEEEEcCCCCE
Confidence            8555433222        367999999999654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.56  E-value=7.9e-14  Score=140.01  Aligned_cols=233  Identities=20%  Similarity=0.296  Sum_probs=154.7

Q ss_pred             cchhhhccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~---~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ....++.||++.|.+++|...+.   +|||+|+|.+||||.+.-............          ......  ......
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~----------~t~~~~--~~~f~~  249 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS----------LTTLSN--LPVFMI  249 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc----------cccccC--Cceeee
Confidence            34467899999999999988655   999999999999999864321110000000          000000  000000


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE-------EecC-CCceEEEEEccC
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-------VFDH-HNYVTCVQFNPI  360 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~-------~~~h-~~~V~~i~fsp~  360 (465)
                      ...-.+.+.  ....+.||.+.|.++.|+|.+ .|+|+|+|+++.+|......-+.       ..++ ...-+...|+| 
T Consensus       250 l~~i~~~is--~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-  326 (764)
T KOG1063|consen  250 LEEIQYRIS--FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-  326 (764)
T ss_pred             eeeEEEEEe--hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-
Confidence            000001111  112345999999999999987 89999999999999886653221       1222 33578899999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367          361 DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~  436 (465)
                      +++.+++-+..|..++|......    .....+|...|+.|+|+|.|.+|++.+.|-+-|+|-.-+.+.....+   .+.
T Consensus       327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi---aRP  403 (764)
T KOG1063|consen  327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI---ARP  403 (764)
T ss_pred             CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee---ccc
Confidence            99999999999999999943321    22367899999999999999999999999999999766444433333   233


Q ss_pred             cccCCceeeEEEeec------CCccc-eeeeecC
Q 012367          437 KTSGNKITGIQGRIS------KNYDN-FRRFQTP  463 (465)
Q Consensus       437 ~~~~~~It~~~f~p~------gs~d~-~~~~~~p  463 (465)
                      ..|+..++++.|.+.      |-..+ +|++..|
T Consensus       404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP  437 (764)
T KOG1063|consen  404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP  437 (764)
T ss_pred             ccccccceeeehccCCceeeecccceeeeeecCc
Confidence            345566666666652      22233 6777766

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=4.2e-13  Score=121.82  Aligned_cols=114  Identities=19%  Similarity=0.435  Sum_probs=92.8

Q ss_pred             cccceEEEEecCCC-E--EEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCC
Q 012367          308 HKGDVLDLAWSNSN-Y--LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE  381 (465)
Q Consensus       308 h~~~V~~l~~s~~~-~--l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~  381 (465)
                      ..++|.+++|+|++ .  +++|..++.|.+||++ ++.+..+. ...+..|.|+| +|+++++|+.+   |.|.+||+++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            34579999999975 4  3445678899999997 66666665 46778999999 99999998764   5699999998


Q ss_pred             CeEEecccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCce
Q 012367          382 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDL  425 (465)
Q Consensus       382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~  425 (465)
                      .+.+....|.. ++.++|+|||++|++++.      |+.++||+..+..+
T Consensus       135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            88887666654 789999999999999874      78899999986644

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3.3e-13  Score=120.28  Aligned_cols=196  Identities=18%  Similarity=0.318  Sum_probs=138.0

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee------eecCCCC-cccccCCCeEEeccCCCCceeEec
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK------SFTDDGG-FGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      .++|.++|+.|+|+  ..+|++|+. |.|+-|...+......      ...+... .......+.+.+....++......
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG  134 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG  134 (325)
T ss_pred             ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence            47999999999998  347888775 9999999876433110      0001000 111122223333333333333332


Q ss_pred             CCcee--eec-CCcceeeeccccceEEEEe-cCCCEEEEEeCCCeEEEEeCCCCeEeEEec---C--------CCceEEE
Q 012367          291 PDEVF--QIE-ESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---H--------HNYVTCV  355 (465)
Q Consensus       291 ~~~~~--~~~-~~~~~~~~gh~~~V~~l~~-s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h--------~~~V~~i  355 (465)
                      ...++  +++ ++..++++||++.|.++.- +..+.++||+.||+|||||.++++++..+.   |        ..+|.|+
T Consensus       135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal  214 (325)
T KOG0649|consen  135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL  214 (325)
T ss_pred             CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE
Confidence            22233  233 4456789999999999997 456799999999999999999999988874   2        2357777


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      +.   +..++++|+ ...+.+|.++..+..........|..+.|..|  .+++++..+.|.-|.+.+
T Consensus       215 a~---~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  215 AV---NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ec---cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence            76   568888877 57799999999998888888899999999755  788888888899998875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.55  E-value=7e-14  Score=127.42  Aligned_cols=188  Identities=16%  Similarity=0.249  Sum_probs=145.0

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .|.+++++..|+. +-+++.+.|-|.++.|||++++..                                          
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------------------------  185 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------------------------  185 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------------------------
Confidence            5678999999987 566999999999999999987411                                          


Q ss_pred             CCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe---c-CCCceEEEEEccCCCCEEEEEeCC-
Q 012367          299 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF---D-HHNYVTCVQFNPIDDNYFISGSID-  371 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~---~-h~~~V~~i~fsp~~~~~l~sgs~D-  371 (465)
                      ......+-+|...|.+++|..+  +.++|++.||.||++|++.-.--..+   . .+.+...++|++.+.+|+|+-..| 
T Consensus       186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS  265 (364)
T KOG0290|consen  186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS  265 (364)
T ss_pred             cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence            1123345689999999999985  48999999999999999875433322   2 356889999999999999987665 


Q ss_pred             CcEEEEeCCCC--eEEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCce-eee-EeeecCcccccCCceeeE
Q 012367          372 GKVRIWGVCEK--RVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL-KLE-KVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       372 g~I~iwd~~~~--~~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~-~~~-~~~~~~~~~~~~~~It~~  446 (465)
                      ..|.|.|++..  .+..+.+|...|++++|.|. ...|++++.|..+.+||+...-. ... .+-    .-+.+..|..+
T Consensus       266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil----ay~a~~EVNqi  341 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL----AYTAGGEVNQI  341 (364)
T ss_pred             ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh----hhhccceeeee
Confidence            57999999864  45569999999999999995 56899999999999999975433 111 111    11145678888


Q ss_pred             EEeecCC
Q 012367          447 QGRISKN  453 (465)
Q Consensus       447 ~f~p~gs  453 (465)
                      ++++...
T Consensus       342 ~Ws~~~~  348 (364)
T KOG0290|consen  342 QWSSSQP  348 (364)
T ss_pred             eecccCC
Confidence            9887644

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.55  E-value=6.6e-14  Score=139.39  Aligned_cols=165  Identities=21%  Similarity=0.348  Sum_probs=124.7

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ..+|.+.|..++|-|....|++++.|.++++||+.+.....                                       
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------------------------------------  136 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------------------------------------  136 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------------------------------
Confidence            35899999999999966699999999999999998754321                                       


Q ss_pred             cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeE--------------------eEEe--------c
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--------------------LNVF--------D  347 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~--------------------l~~~--------~  347 (465)
                          ...+.||.+.|.+++|.+.+  .+++|+.||.|.|||++....                    ....        .
T Consensus       137 ----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  137 ----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence                22466999999999999864  899999999999999864320                    0000        1


Q ss_pred             CCC----ceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEEe---------cccC---CCCeEEEEEeeCCCEEEEEE
Q 012367          348 HHN----YVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       348 h~~----~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~~---------~~~~---~~~V~sv~~spdg~~l~sgs  410 (465)
                      +..    .|+.+.| . |...||+++. |+.|+|||++......         +..|   .-.+++++....|.+|.+.+
T Consensus       213 ~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            222    3555555 4 8889999888 9999999998754321         1222   34577888888889999999


Q ss_pred             cCCcEEEEEecCCceee
Q 012367          411 ITGTCHFYKASGNDLKL  427 (465)
Q Consensus       411 ~dG~v~iwd~~~~~~~~  427 (465)
                      .|++|++|++.+.....
T Consensus       291 tD~sIy~ynm~s~s~sP  307 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISP  307 (720)
T ss_pred             cCCcEEEEeccccCcCc
Confidence            99999999998765543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.55  E-value=1.4e-13  Score=127.43  Aligned_cols=167  Identities=19%  Similarity=0.338  Sum_probs=133.5

Q ss_pred             hhhhccCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          215 SQEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fsp-----dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      .+....|+.+|..++|++     .-+.+||+|.+ .|.+|........+.                              
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~------------------------------   79 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRL------------------------------   79 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceee------------------------------
Confidence            355668999999999985     23477887764 688888764221110                              


Q ss_pred             cCCceeeecCCcceee--eccccceEEEEecC-----CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC
Q 012367          290 IPDEVFQIEESPLQEL--HGHKGDVLDLAWSN-----SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID  361 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~--~gh~~~V~~l~~s~-----~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~  361 (465)
                                  ++.+  ..|...-..++|+-     +.+++.++.-|.|+|.|+.++++...+ +|...|+.|.|+|..
T Consensus        80 ------------lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~  147 (385)
T KOG1034|consen   80 ------------LQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR  147 (385)
T ss_pred             ------------eeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC
Confidence                        0110  02455555667752     238999999999999999999998888 699999999999988


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .++++++|.|..||+|++++..++.    ..+|.+.|.++.|+++|.+|++++.|.++++|++....
T Consensus       148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence            9999999999999999999988776    45699999999999999999999999999999998433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=2.7e-13  Score=124.99  Aligned_cols=190  Identities=18%  Similarity=0.255  Sum_probs=130.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC--cccccCCCeEEeccCCCCceeEecCC-cee
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG--FGSNAKEGKIKFGKKKSSHVPVVIPD-EVF  295 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  295 (465)
                      .-|.-.|-.+-..-++.||+|++.|.+|.+|++.. +......+....  .......+.....       ..+.++ .+|
T Consensus       184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~idtnq~~n~~aavSP~GRFia~-------~gFTpDVkVw  255 (420)
T KOG2096|consen  184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSIDTNQSSNYDAAVSPDGRFIAV-------SGFTPDVKVW  255 (420)
T ss_pred             hhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeeccccccccceeeCCCCcEEEE-------ecCCCCceEE
Confidence            45778888888888999999999999999999984 333222221111  0111111111110       011111 122


Q ss_pred             ee---------cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCC-------CCeEeEEec-----CCCceE
Q 012367          296 QI---------EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVG-------CNQCLNVFD-----HHNYVT  353 (465)
Q Consensus       296 ~~---------~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~-------~~~~l~~~~-----h~~~V~  353 (465)
                      .+         +...+..+.||...|+.++|+|+ ..++|.|.||+++|||+.       ..+.++++.     ......
T Consensus       256 E~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~  335 (420)
T KOG2096|consen  256 EPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV  335 (420)
T ss_pred             EEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence            22         23456678999999999999987 589999999999999984       223444441     223344


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      .+..+| +++.|+... ...+++|..++++...  -..|...|.+++|+|+|+++++++ |..++++.
T Consensus       336 RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  336 RLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            899999 998888765 6789999999988775  345899999999999999999986 55677765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.54  E-value=2.1e-14  Score=139.02  Aligned_cols=175  Identities=17%  Similarity=0.277  Sum_probs=142.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      |.|+.+   ..|+++||..+.|+|||+...                                             -..+.
T Consensus        85 v~~~s~---S~y~~sgG~~~~Vkiwdl~~k---------------------------------------------l~hr~  116 (673)
T KOG4378|consen   85 VACASQ---SLYEISGGQSGCVKIWDLRAK---------------------------------------------LIHRF  116 (673)
T ss_pred             Hhhhhc---ceeeeccCcCceeeehhhHHH---------------------------------------------HHhhh
Confidence            444444   479999999999999999842                                             12455


Q ss_pred             eeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367          305 LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~  381 (465)
                      +.+|+..|+++.++. |.+|++++..|.|.|..+.++.....|.|.  ..|.-+.|+|....+|.+++.+|.|.+||+..
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            678999999999986 569999999999999999999988889765  35679999996666788899999999999988


Q ss_pred             CeEEe--cccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367          382 KRVVD--WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       382 ~~~~~--~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                      ...+.  ...|..+...|||+|.. ..|++.+.|..|.+||+...+.. ..+.+       ..+.+.++|.++|.|.
T Consensus       197 ~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y-------~~Plstvaf~~~G~~L  265 (673)
T KOG4378|consen  197 MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTY-------SHPLSTVAFSECGTYL  265 (673)
T ss_pred             CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeee-------cCCcceeeecCCceEE
Confidence            76654  55699999999999954 67888999999999999865442 22222       3478899999998874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=6e-13  Score=133.58  Aligned_cols=195  Identities=19%  Similarity=0.352  Sum_probs=150.4

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      ++..+.....+....++||+|+.+|.+..++.|++||.+...+........                             
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-----------------------------  146 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-----------------------------  146 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-----------------------------
Confidence            444555556677888999999999999999999999977777776543221                             


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEe-----c----CCCceEEEEE
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF-----D----HHNYVTCVQF  357 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~-----~----h~~~V~~i~f  357 (465)
                                    ...+.-.++.|.+++|+|++. +++|+.||.|++||+.+++.+...     +    ...-|+++.|
T Consensus       147 --------------~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~  212 (691)
T KOG2048|consen  147 --------------KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF  212 (691)
T ss_pred             --------------EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE
Confidence                          112223468999999999884 999999999999999999887732     1    2235888888


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~  436 (465)
                      -.  ...|++|..-|+|.+||...+.++. ...|...|.+++..+++.++++++.|+.|.-|...+++.+   +...+.+
T Consensus       213 Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r  287 (691)
T KOG2048|consen  213 LR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRR  287 (691)
T ss_pred             ee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccc
Confidence            74  6789999999999999999998886 6678999999999999999999999999999999887664   2222223


Q ss_pred             cccCCceeeEEEee
Q 012367          437 KTSGNKITGIQGRI  450 (465)
Q Consensus       437 ~~~~~~It~~~f~p  450 (465)
                      .-+...+.+++..+
T Consensus       288 ~~h~hdvrs~av~~  301 (691)
T KOG2048|consen  288 DLHAHDVRSMAVIE  301 (691)
T ss_pred             cCCcccceeeeeec
Confidence            33344455554443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.6e-12  Score=119.83  Aligned_cols=210  Identities=17%  Similarity=0.272  Sum_probs=140.8

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc---CCCeEEeccCCCC
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA---KEGKIKFGKKKSS  284 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  284 (465)
                      +|......+.|.+|..+|.+++||++|+.|+|+|.|..|++||+..+.+......+.......-   ..+..........
T Consensus        51 D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s  130 (405)
T KOG1273|consen   51 DFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES  130 (405)
T ss_pred             EccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC
Confidence            5666677889999999999999999999999999999999999998876554433322211111   0111110000000


Q ss_pred             ceeEecCCceeeecCCcceeeeccc--c----ceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEE
Q 012367          285 HVPVVIPDEVFQIEESPLQELHGHK--G----DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCV  355 (465)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~gh~--~----~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i  355 (465)
                      ..       +..... +.+.+-...  +    .-.+..|.+. .++++|...|.+.++|..+.+|+..++..  ..|..|
T Consensus       131 p~-------vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I  202 (405)
T KOG1273|consen  131 PV-------VIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI  202 (405)
T ss_pred             cE-------EEEecC-CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE
Confidence            11       111111 222221111  0    0111235554 49999999999999999999999999633  588999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCC-------CeEEeccc-----CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVDWAD-----VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG  422 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~-------~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~  422 (465)
                      .|+. .+++|+.-+.|+.||.|++..       +.+.....     ....-.+++|+.+|.++++|+. ...++||....
T Consensus       203 ~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  203 IVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             EEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            9998 999999999999999999862       12211111     1223457899999999988886 46799999988


Q ss_pred             Ccee
Q 012367          423 NDLK  426 (465)
Q Consensus       423 ~~~~  426 (465)
                      +.+.
T Consensus       282 GsLV  285 (405)
T KOG1273|consen  282 GSLV  285 (405)
T ss_pred             ccee
Confidence            8774

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.52  E-value=1.7e-13  Score=130.01  Aligned_cols=167  Identities=22%  Similarity=0.372  Sum_probs=135.7

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       222 ~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ..+|..+.|.++.. .|||||.|..|+||.+........             ..                       .-.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------~~-----------------------~V~   56 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------DM-----------------------KVE   56 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------ce-----------------------eEE
Confidence            46799999999877 999999999999999875322100             00                       012


Q ss_pred             cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC--------C-----C---eEeEEe-cCCCceEEEEEccCCC
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD  362 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~--------~-----~---~~l~~~-~h~~~V~~i~fsp~~~  362 (465)
                      .+..+..|...|+++.|+|++ +|+||+.+|.|.+|-..        +     .   ...+.. .|...|+.++|+| ++
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~  135 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS  135 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence            345677899999999999986 89999999999999765        2     1   122223 4889999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          363 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +++++|+.|+.+++||+..+++.. ..+|...|..++|.|-++++++-+.|...+.+.+.....
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence            999999999999999999999887 778999999999999999999999998777777764433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.52  E-value=8.2e-13  Score=133.02  Aligned_cols=155  Identities=16%  Similarity=0.223  Sum_probs=117.8

Q ss_pred             cceeeeccccceEEEEecC-C---CEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceE---------------------
Q 012367          301 PLQELHGHKGDVLDLAWSN-S---NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVT---------------------  353 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~-~---~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~---------------------  353 (465)
                      ....+..|...|.|+.++. .   .+|++++.|..|.|+|+...- ++.++ +|+..|+                     
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence            3455778999999999984 2   489999999999999986432 22232 2444444                     


Q ss_pred             ----------------------------EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c---ccCCCCeEEEEEee
Q 012367          354 ----------------------------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W---ADVRDVISAICYIP  401 (465)
Q Consensus       354 ----------------------------~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~---~~~~~~V~sv~~sp  401 (465)
                                                  .++..| ...++++++.|+.|+|||+.+++... +   .+|.+...-+...|
T Consensus       573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP  651 (1080)
T KOG1408|consen  573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP  651 (1080)
T ss_pred             hheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC
Confidence                                        444555 55689999999999999999988776 3   34667788899999


Q ss_pred             CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC-------CccceeeeecC
Q 012367          402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK-------NYDNFRRFQTP  463 (465)
Q Consensus       402 dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g-------s~d~~~~~~~p  463 (465)
                      .|-++++.+.|.++.+||..++...- ++..      +.-.+||+.|.++-       ....+-+|..|
T Consensus       652 SgiY~atScsdktl~~~Df~sgEcvA-~m~G------HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  652 SGIYLATSCSDKTLCFVDFVSGECVA-QMTG------HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             CccEEEEeecCCceEEEEeccchhhh-hhcC------cchheeeeeecccchhheeecCCceEEEEECc
Confidence            99999999999999999999886632 3333      34689999999883       33447777777

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.51  E-value=5.6e-13  Score=133.19  Aligned_cols=215  Identities=16%  Similarity=0.266  Sum_probs=151.1

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC---------ceeeeeeecCCCCcccccCCCeE--
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS---------VAASCKSFTDDGGFGSNAKEGKI--  276 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~---------~~~~~~~~~~~~~~~~~~~~~~~--  276 (465)
                      +...-...|+|+||++.|+|++|+.||+.+|||+.|..|.||.-.-         ....|..+.+..+....+.....  
T Consensus        39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFgl  118 (1081)
T KOG1538|consen   39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGL  118 (1081)
T ss_pred             eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccc
Confidence            3344556789999999999999999999999999999999998542         12233444433322111111111  


Q ss_pred             -------------------EeccCCCCceeEecCCceeeecC---Cc---ceeeeccccceEEEEecCC------CEEEE
Q 012367          277 -------------------KFGKKKSSHVPVVIPDEVFQIEE---SP---LQELHGHKGDVLDLAWSNS------NYLLS  325 (465)
Q Consensus       277 -------------------~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~gh~~~V~~l~~s~~------~~l~s  325 (465)
                                         ..+...+.+..+...++...+..   .+   +..-.|.+.+|.+++|+|.      ..++.
T Consensus       119 WS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  119 WSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             cChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence                               11222233333333333333321   11   2233457889999999974      27888


Q ss_pred             EeCCCeEEEEeCCCCeEeE-EecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC
Q 012367          326 CSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK  404 (465)
Q Consensus       326 ~s~DgtV~lWD~~~~~~l~-~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~  404 (465)
                      .....|+..+.+. |+.+. .-.-.-...|+++.| +|.|+..|+.|+.+++|....-.+-+......+|++|+..|+++
T Consensus       199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ  276 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ  276 (1081)
T ss_pred             EeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence            8888999998886 44443 333444667999999 99999999999999999877666667777889999999999999


Q ss_pred             EEEEEEcCCcEEEEEecCCc
Q 012367          405 GFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       405 ~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .++.|+.||+|-.|++-..+
T Consensus       277 ~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  277 YVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             eEEEEEccCeeehhhhHHhH
Confidence            99999999999999976443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=9.1e-13  Score=121.14  Aligned_cols=239  Identities=17%  Similarity=0.263  Sum_probs=148.5

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeee-
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASC-  258 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~-  258 (465)
                      +...+..++-...++++++...+..-   ...+....++|.+.|+.|.|.+  -|+.+|+++.|+++.||.=......+ 
T Consensus        22 D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~   98 (361)
T KOG2445|consen   22 DFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH   98 (361)
T ss_pred             cccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence            44445555666778888887433322   2334456679999999999966  58999999999999999753211100 


Q ss_pred             -eee-cCCCCcccccCCCeEEeccCCC----------CceeEecCCceeeec-CCcceeee-------ccccceEEEEec
Q 012367          259 -KSF-TDDGGFGSNAKEGKIKFGKKKS----------SHVPVVIPDEVFQIE-ESPLQELH-------GHKGDVLDLAWS  318 (465)
Q Consensus       259 -~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~-------gh~~~V~~l~~s  318 (465)
                       ... .-............+.++...-          ++..+.......++. -...++++       .+.....|+.|+
T Consensus        99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn  178 (361)
T KOG2445|consen   99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN  178 (361)
T ss_pred             cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence             000 0000000111111122222211          111111111111111 11122222       466778899999


Q ss_pred             CCC----EEEEEeCC-----CeEEEEeCCCCe--Ee--EEe-cCCCceEEEEEccCCCC---EEEEEeCCCcEEEEeCCC
Q 012367          319 NSN----YLLSCSMD-----KTVRMWQVGCNQ--CL--NVF-DHHNYVTCVQFNPIDDN---YFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       319 ~~~----~l~s~s~D-----gtV~lWD~~~~~--~l--~~~-~h~~~V~~i~fsp~~~~---~l~sgs~Dg~I~iwd~~~  381 (465)
                      |..    +|+.|+.+     +.++||....+.  ..  ..+ +|.++|+.|+|.|.-|+   .||+++.|| |+||.+..
T Consensus       179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence            853    66666665     478999775442  22  223 59999999999995443   689999999 99999863


Q ss_pred             Ce---------------------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          382 KR---------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       382 ~~---------------------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .+                     +..+.+|+..|..++|+-.|..|++.+.||+||+|...-..
T Consensus       258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            11                     22367899999999999999999999999999999876443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=134.77  Aligned_cols=188  Identities=25%  Similarity=0.388  Sum_probs=125.8

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      +.+.+|.+.|.|-.|+|+|.-|+|+|+||.|+||.-...-..... .....+      .............  ...+...
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~-Q~~~~v------~c~~W~p~S~~vl--~c~g~h~  168 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV-QNEESI------RCARWAPNSNSIV--FCQGGHI  168 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh-hcCcee------EEEEECCCCCceE--EecCCeE
Confidence            456799999999999999999999999999999986542111000 000000      0011111111111  1111111


Q ss_pred             ee----cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          296 QI----EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       296 ~~----~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      .+    ....+.....|.+-|.++.|++. +.+++|+.|-..++||.........-.|..+|++++|+| + ..++.+|.
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~  246 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY  246 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeee
Confidence            11    11234457799999999999985 699999999999999987444444446889999999999 6 66666664


Q ss_pred             CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                       +++|+=          ....+.|..++|+|||..+++|+..|.+.+=.+-...+
T Consensus       247 -nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l  290 (737)
T KOG1524|consen  247 -NTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQL  290 (737)
T ss_pred             -eeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhh
Confidence             455522          23446789999999999999999999887655544443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.50  E-value=9.9e-14  Score=137.80  Aligned_cols=165  Identities=21%  Similarity=0.357  Sum_probs=132.0

Q ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          221 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       221 H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      ....|+.+.|.| |...||.|+.||.|++|.+..+....                                      ...
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------------------------------~~~  667 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------------------------------NEM  667 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------------------------------ccC
Confidence            345699999999 66799999999999999997643211                                      123


Q ss_pred             CcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      .|...+.+|...|+++.|+|  .+.|++++.|-+|+|||+.++.....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus       668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence            56778889999999999998  468999999999999999998876666 7999999999999 9999999999999999


Q ss_pred             EeCCCCeEEecc--c-CCCCeEEEEEeeCCCEEEEEEcC----CcEEEEEecCCc
Q 012367          377 WGVCEKRVVDWA--D-VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND  424 (465)
Q Consensus       377 wd~~~~~~~~~~--~-~~~~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~~  424 (465)
                      |.-+.+..-...  + ....--.|.|.-||+++++.+.|    ..|.+||..+-.
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            999875432211  1 22334457788899998887764    568888876544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.4e-14  Score=147.97  Aligned_cols=186  Identities=21%  Similarity=0.301  Sum_probs=142.9

Q ss_pred             CCcEEEEEECCCCCE----EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          222 KGCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       222 ~~~I~~l~fspdg~~----LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ....+.++|.+.|..    ||.|.+||.|.+||......                                       ..
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~  104 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NA  104 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Cc
Confidence            344678999988775    99999999999999875200                                       00


Q ss_pred             cCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          298 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                      ....+.+...|++.|..+.|++.  ++|++|+.||.|.|||+..-+.-...   ...+.|.|++|+......|++++.+|
T Consensus       105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg  184 (1049)
T KOG0307|consen  105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG  184 (1049)
T ss_pred             chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCC
Confidence            12345667789999999999984  49999999999999999875544444   24568999999997888999999999


Q ss_pred             cEEEEeCCCCeEE-ecccCC--CCeEEEEEeeCC-CEEEEEEcC---CcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          373 KVRIWGVCEKRVV-DWADVR--DVISAICYIPDG-KGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       373 ~I~iwd~~~~~~~-~~~~~~--~~V~sv~~spdg-~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      ++.|||++..+.+ .+..+.  ..+..++|+|++ ..|++++.|   -.|.+||++--.-+++.+..|.      ..|.+
T Consensus       185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~------~Gils  258 (1049)
T KOG0307|consen  185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ------RGILS  258 (1049)
T ss_pred             CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc------cceee
Confidence            9999999876544 444443  357899999987 456666654   3689999997777766554444      67999


Q ss_pred             EEEeecC
Q 012367          446 IQGRISK  452 (465)
Q Consensus       446 ~~f~p~g  452 (465)
                      +.+++.+
T Consensus       259 lsWc~~D  265 (1049)
T KOG0307|consen  259 LSWCPQD  265 (1049)
T ss_pred             eccCCCC
Confidence            9999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.49  E-value=6.2e-12  Score=125.21  Aligned_cols=170  Identities=30%  Similarity=0.573  Sum_probs=139.0

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ......+.+|...|.+++|+|++.++++++. |+.+++|++...                                    
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  188 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG------------------------------------  188 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC------------------------------------
Confidence            3445667899999999999999999999986 999999998852                                    


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE-Ee-cCCCceEEEEEccCCCCEEE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VF-DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~-~~-~h~~~V~~i~fsp~~~~~l~  366 (465)
                               ..+..+.+|...|.+++|+|++  .+++++.|++|++||...+..+. .+ .|...+ ...|+| ++.+++
T Consensus       189 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  257 (466)
T COG2319         189 ---------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLA  257 (466)
T ss_pred             ---------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEE
Confidence                     3455666799999999999876  45555999999999999888877 45 466665 448999 778999


Q ss_pred             EEeCCCcEEEEeCCCCeE--EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          367 SGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~--~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      +++.|+.+++|++.....  .....|...|.++.|.|++..+++++.|+.+.+|++........
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            999999999999986543  33457789999999999998998899999999998877665443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.48  E-value=6.6e-13  Score=121.00  Aligned_cols=208  Identities=20%  Similarity=0.324  Sum_probs=137.9

Q ss_pred             chhhhccCCCcEEEEEECCCCC-EEEEEeCC-------CcEEEEecCCceeeeeeecCCC--Ccc--cccCCCeEEeccC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGR-YLASGGED-------GVVRIWHVTSVAASCKSFTDDG--GFG--SNAKEGKIKFGKK  281 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~-~LaSgs~D-------g~V~iWd~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~  281 (465)
                      +.+.|..|.|.||.++-+|-.+ .|+|+-.|       ..+.||.+...........-..  ...  .......+.+...
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3466778999999999999554 77777543       2478999876433211111000  000  0011122222222


Q ss_pred             CCCceeEecCC-ceeeecCCc--cee-----eeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEec--CC
Q 012367          282 KSSHVPVVIPD-EVFQIEESP--LQE-----LHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HH  349 (465)
Q Consensus       282 ~~~~~~~~~~~-~~~~~~~~~--~~~-----~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~  349 (465)
                      ....+.+..+. .+|.+...+  +..     -.+|....++-+|+|  ++.-+....|+++..||+++..+...+.  |.
T Consensus       135 s~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  135 SDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             CCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhc
Confidence            22222222111 112222111  111     224667788889998  4555556678999999999999888884  88


Q ss_pred             CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEec
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~  421 (465)
                      ..|..+.|+|....+|++|+.||.|||||.+..+  +..+.+|..+|.+|.|+|. .+.|++|+.|..|.+|...
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            8999999999777889999999999999998643  4458899999999999994 4688999999999999765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.48  E-value=5.8e-13  Score=130.27  Aligned_cols=220  Identities=13%  Similarity=0.229  Sum_probs=144.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCCceeEecCCceeee-
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPVVIPDEVFQI-  297 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-  297 (465)
                      -|...|-|+.|+.+...+.+++.+-.++-|++.+.... ....+...+............ ........+...++-|.+ 
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            36666779999887766666555555555555443221 111111111111111111111 122233333444444444 


Q ss_pred             --cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          298 --EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       298 --~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                        ..+.......|.+.|.+-.|+|+| -|++++.||.|++|.-... ...++ +...+|.|++|.|...+.+.+.+  +.
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h  167 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQNEESIRCARWAPNSNSIVFCQG--GH  167 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhcCceeEEEEECCCCCceEEecC--Ce
Confidence              234456678899999999999987 7999999999999986432 22222 56779999999995566666544  55


Q ss_pred             EEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          374 VRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       374 I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      +.|=-+. +.+++.|..|.+.|.++.|+|..+.+++|+.|-..++||..+..+-.        ...+..+||+++|.|+
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAFNPE  238 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeeeccc
Confidence            6666664 45678899999999999999999999999999999999988765421        1123467888888887

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.48  E-value=3.3e-11  Score=119.95  Aligned_cols=221  Identities=23%  Similarity=0.424  Sum_probs=158.4

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeeeeecCCCCcccccCCCeEEec-cCCCCceeE-ec---
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-ASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPV-VI---  290 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~---  290 (465)
                      .+.+|...|.++.|.+.+..++.++.|+.+.+|+..... ..........     ......... ......... ..   
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~  134 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDG  134 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCc
Confidence            566899999999999999999999999999999998875 2222222111     011111110 000001111 01   


Q ss_pred             CCceeeec--CCcceeeeccccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCC-E
Q 012367          291 PDEVFQIE--ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-Y  364 (465)
Q Consensus       291 ~~~~~~~~--~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~-~  364 (465)
                      ...+|...  ......+.+|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+++|+| ++. +
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  213 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLL  213 (466)
T ss_pred             cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceE
Confidence            11234444  25667788999999999999986 6777775 9999999999888887775 889999999998 777 5


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          365 FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +++++.|+.|++||...+....  +..|...+ ...|+|++..+++++.|+.+++|++............      +...
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~~~~  286 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG------HSSS  286 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec------CCcc
Confidence            6666999999999998776665  66677765 4489999999999999999999999876652222211      2466


Q ss_pred             eeeEEEee
Q 012367          443 ITGIQGRI  450 (465)
Q Consensus       443 It~~~f~p  450 (465)
                      +.++.|.|
T Consensus       287 v~~~~~~~  294 (466)
T COG2319         287 VLSVAFSP  294 (466)
T ss_pred             EEEEEECC
Confidence            77777777

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=8.5e-13  Score=117.65  Aligned_cols=202  Identities=13%  Similarity=0.215  Sum_probs=142.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      ..|.+-+++|.+++|+.|..+|.|-+..+.+......                                   ......++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------------------------------~~~gk~~i   55 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------------------------------EPPGKLKI   55 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------------------------------CCCCCcce
Confidence            3466778999999999999999999999876321110                                   00012345


Q ss_pred             eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe----EeEEe-----cCC-----CceEEEEEccCCCCEEEEE
Q 012367          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVF-----DHH-----NYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~----~l~~~-----~h~-----~~V~~i~fsp~~~~~l~sg  368 (465)
                      ..+++|.++|..++|+ +.+|++|+. |.|+-|..+...    +....     .|.     -.|+++-..| ..+-++.+
T Consensus        56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A  132 (325)
T KOG0649|consen   56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA  132 (325)
T ss_pred             eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence            5668999999999998 566777765 999999764321    11111     122     2578899999 55555555


Q ss_pred             eCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc---cccc-CCce
Q 012367          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTS-GNKI  443 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~---~~~~-~~~I  443 (465)
                      +.|+.++-||+.+|++.. +.+|++.|.++.-......+++|+.||++|+||+.+++-.. .+....+   .+.+ ++.|
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE-EeccccChhhcCcccCcee
Confidence            579999999999999876 89999999999986666689999999999999999876532 2222221   1222 3555


Q ss_pred             eeEE----EeecCCccceeeeecC
Q 012367          444 TGIQ----GRISKNYDNFRRFQTP  463 (465)
Q Consensus       444 t~~~----f~p~gs~d~~~~~~~p  463 (465)
                      -.++    +...|.--+.-+|..|
T Consensus       212 gala~~edWlvCGgGp~lslwhLr  235 (325)
T KOG0649|consen  212 GALAVNEDWLVCGGGPKLSLWHLR  235 (325)
T ss_pred             EEEeccCceEEecCCCceeEEecc
Confidence            5554    4445666677777765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=8.2e-13  Score=123.02  Aligned_cols=143  Identities=20%  Similarity=0.405  Sum_probs=116.3

Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEE
Q 012367          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  314 (465)
Q Consensus       235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~  314 (465)
                      ..+|++-..|.|++||..++                                             +.+..+.+|...+..
T Consensus        41 ~~vav~lSngsv~lyd~~tg---------------------------------------------~~l~~fk~~~~~~N~   75 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG---------------------------------------------QLLEEFKGPPATTNG   75 (376)
T ss_pred             eeEEEEecCCeEEEEeccch---------------------------------------------hhhheecCCCCcccc
Confidence            46888888999999999874                                             346778888888888


Q ss_pred             EEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEec---CC-CceEEEEEccCCCCEEEEEeC----CCcEEEEeCCCCe
Q 012367          315 LAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFD---HH-NYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCEKR  383 (465)
Q Consensus       315 l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~-~~V~~i~fsp~~~~~l~sgs~----Dg~I~iwd~~~~~  383 (465)
                      +.|...   ..+.+|+.||+|++||++.......+.   ++ .+..|++.+- .++.+++|..    +..|.+||++..+
T Consensus        76 vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q  154 (376)
T KOG1188|consen   76 VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ  154 (376)
T ss_pred             eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc
Confidence            998752   379999999999999999877666553   43 4778888876 7788888853    6789999998765


Q ss_pred             E-Ee--cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCC
Q 012367          384 V-VD--WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       384 ~-~~--~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      . +.  ...|.+.|++++|+| +.+.|++|+.||-|.+||+...
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            4 43  456999999999999 5579999999999999999754

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.46  E-value=1e-12  Score=121.44  Aligned_cols=159  Identities=23%  Similarity=0.362  Sum_probs=120.5

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      -.+++|+|||.+|+.|- ...|+|+|+......+....                                     ...+.
T Consensus       161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~-------------------------------------t~~~~  202 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT-------------------------------------TVTKG  202 (406)
T ss_pred             heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh-------------------------------------hhhcc
Confidence            35899999999998765 47799999854322111110                                     11111


Q ss_pred             eeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCC
Q 012367          305 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVC  380 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~  380 (465)
                      -.+..+-|.+++++|-  +.++.++...++-|+.-..+.++..+ +|.+.|+.++|.+ +|+.|.+|+. |.+|-.||++
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeeh
Confidence            3356788899999984  48999999999999988888888877 6999999999999 9999999986 7789999998


Q ss_pred             CCe--EEecccCCC-CeEE--EEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          381 EKR--VVDWADVRD-VISA--ICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       381 ~~~--~~~~~~~~~-~V~s--v~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .-.  +..+..|.+ .-..  +...|+|++|++|+.||.|++||+.+
T Consensus       282 ~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  282 YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            643  223444443 2233  45568999999999999999999987

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.44  E-value=1.2e-12  Score=130.80  Aligned_cols=175  Identities=25%  Similarity=0.406  Sum_probs=137.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .|..++|-|||..|+.+..| .+.|||+..+                                             ..+.
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG---------------------------------------------~llq   47 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDG---------------------------------------------TLLQ   47 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCc---------------------------------------------cccc
Confidence            79999999999987777654 5899998864                                             4578


Q ss_pred             eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      ++.||.+.|.+++|+.+| .++||+.|+.|.+|...- +-+-.+.|.+.|.|+.|+| -...+++++.. ..-+|.....
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK  124 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK  124 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh
Confidence            889999999999999876 899999999999998653 3345568999999999999 78888988864 4678887655


Q ss_pred             eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          383 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       383 ~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      .+.. ......+.+.+|..||++++.|-.+|+|.+-+-.+....  .+.-   ...+..+|-+++|+|+.+
T Consensus       125 ~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~--~I~R---pgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  125 SVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV--KIER---PGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             hHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce--EEeC---CCCCCCCceEEEecCCCC
Confidence            4433 334567889999999999999999999998865433221  2222   223567899999999843

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.44  E-value=2.4e-12  Score=126.15  Aligned_cols=188  Identities=19%  Similarity=0.331  Sum_probs=134.4

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       222 ~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +..|+|++|-|.+. .++.+-.+|.+.++|.......   ..+  ............+.         ..   .......
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~---t~p--~~~~~k~~~~f~i~---------t~---ksk~~rN  281 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA---TAP--SYQALKDGDQFAIL---------TS---KSKKTRN  281 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---CCC--cccccCCCCeeEEe---------ee---eccccCC
Confidence            47899999999655 6666678999999987321100   000  00000000000000         00   0001124


Q ss_pred             cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      |+..+.--.+.|...+|+|++ +|++.|.||.+||+|..+...+..++ --+...|++|+| |++||++|+.|..|.||.
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEE
Confidence            555555556689999999986 99999999999999999888777764 456789999999 999999999999999999


Q ss_pred             CCCCeEEe-cccCCCCeEEEEEeeC-----------------------------------C-------------CEEEEE
Q 012367          379 VCEKRVVD-WADVRDVISAICYIPD-----------------------------------G-------------KGFIVG  409 (465)
Q Consensus       379 ~~~~~~~~-~~~~~~~V~sv~~spd-----------------------------------g-------------~~l~sg  409 (465)
                      +..++++. -.+|+.+|+.|+|.|-                                   +             -.|.+.
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV  440 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV  440 (636)
T ss_pred             eccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence            99999887 5789999999999830                                   1             146677


Q ss_pred             EcCCcEEEEEecCCceee
Q 012367          410 SITGTCHFYKASGNDLKL  427 (465)
Q Consensus       410 s~dG~v~iwd~~~~~~~~  427 (465)
                      +.|-.+.+||+....+..
T Consensus       441 GqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  441 GQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cccceEEEEecchhhccc
Confidence            789999999998776644

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.43  E-value=4e-12  Score=130.70  Aligned_cols=229  Identities=19%  Similarity=0.267  Sum_probs=145.9

Q ss_pred             cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCc---
Q 012367          193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---  267 (465)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---  267 (465)
                      ..+.+-+|...+..... +.........|..+|+.+.|-.+-.  -++++|.||.|..|++................   
T Consensus       263 y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~  341 (555)
T KOG1587|consen  263 YNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKG  341 (555)
T ss_pred             cCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccc
Confidence            34445555444433321 1222334457999999999977544  49999999999999876533211111100000   


Q ss_pred             ---ccccCCCeEEeccCCCCceeE-ecCCceee-----------ecCCcceeeeccccceEEEEecCC--CEEEEEeCCC
Q 012367          268 ---GSNAKEGKIKFGKKKSSHVPV-VIPDEVFQ-----------IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDK  330 (465)
Q Consensus       268 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~Dg  330 (465)
                         ........+.+.........+ ...+.++.           ...++...+..|.+.|..+.++|=  ..+++++ |.
T Consensus       342 ~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW  420 (555)
T KOG1587|consen  342 QQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DW  420 (555)
T ss_pred             cccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cc
Confidence               000001111111111111111 11111111           112335566778999999999983  3555555 99


Q ss_pred             eEEEEeCC-CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCE
Q 012367          331 TVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKG  405 (465)
Q Consensus       331 tV~lWD~~-~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~  405 (465)
                      +|+||... ...++..+ .+..+|++++|+|+....|+++..||.|.|||+...   .+....-+....+.+.|+++|+.
T Consensus       421 ~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~  500 (555)
T KOG1587|consen  421 TVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKL  500 (555)
T ss_pred             eeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcE
Confidence            99999987 55666666 477789999999999999999999999999999643   23333334667788899999999


Q ss_pred             EEEEEcCCcEEEEEecCC
Q 012367          406 FIVGSITGTCHFYKASGN  423 (465)
Q Consensus       406 l~sgs~dG~v~iwd~~~~  423 (465)
                      |++|...|++++|++...
T Consensus       501 lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  501 LAVGDANGTTHILKLSES  518 (555)
T ss_pred             EEEecCCCcEEEEEcCch
Confidence            999999999999999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.39  E-value=2.9e-12  Score=115.56  Aligned_cols=165  Identities=18%  Similarity=0.251  Sum_probs=125.3

Q ss_pred             cCCCcEEEEEECC-CCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          220 AHKGCIWTLKFSP-DGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       220 ~H~~~I~~l~fsp-dg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      +..+.+.|..+.- ++.  +|+.|-++|.|.+||+.++........                                  
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~----------------------------------  193 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ----------------------------------  193 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------------
Confidence            4567788887543 343  677888999999999988633222111                                  


Q ss_pred             ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eE-eE-Eec-CCCceEEEEEccCCCCEEEEEeC
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN--QC-LN-VFD-HHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~--~~-l~-~~~-h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                       ..+.......|..+|.++.+.+. +.=++|+.+..+..|.+...  .+ ++ ... .+-.|..+..-| |++.+||++.
T Consensus       194 -~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGW  271 (323)
T KOG0322|consen  194 -SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGW  271 (323)
T ss_pred             -ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeeccc
Confidence             01223344579999999999863 34578888888999988533  22 11 112 334578889999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      |+.||||..++.+.+. +..|...|++++|+|+...+++++.|++|.+|++
T Consensus       272 D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  272 DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999988776 7779999999999999999999999999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.39  E-value=2.7e-11  Score=114.10  Aligned_cols=157  Identities=18%  Similarity=0.283  Sum_probs=121.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      ..+|.+|.++.+  .|+.+=++. |.|||+.+.+....                                          
T Consensus        87 pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhT------------------------------------------  121 (391)
T KOG2110|consen   87 PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHT------------------------------------------  121 (391)
T ss_pred             CCceEEEEEccc--eEEEEEccc-EEEEecccceeehh------------------------------------------
Confidence            567999999754  566666654 99999998644322                                          


Q ss_pred             ceeeeccccceEEEEecCCC-EEEE--EeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc-EEE
Q 012367          302 LQELHGHKGDVLDLAWSNSN-YLLS--CSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK-VRI  376 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~-~l~s--~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~-I~i  376 (465)
                      +.....|...+.++.+++.+ +|+-  ....|.|.|||+.+-+.+..+ .|.+.+-|++|+| +|.++||+|..|+ |||
T Consensus       122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRV  200 (391)
T ss_pred             hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEE
Confidence            11222355566677776654 5552  334589999999999998888 4999999999999 9999999999887 789


Q ss_pred             EeCCCCeEEe-ccc--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          377 WGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       377 wd~~~~~~~~-~~~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      |.+.+|+.+. +..  ....|.+++|+|++++|++.+..++|++|.+....
T Consensus       201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            9999987765 322  24568999999999999999999999999987544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=7.9e-11  Score=111.01  Aligned_cols=217  Identities=16%  Similarity=0.251  Sum_probs=137.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC----ceee
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD----EVFQ  296 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  296 (465)
                      ....|..+.|+.+...|..|+.|| -+++.......... ....+..       .+...-.....+.+....    ++..
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~-------IvEmLFSSSLvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVS-------IVEMLFSSSLVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeE-------EEEeecccceeEEEecCCCceEEEEE
Confidence            345678888999999999999999 57887765322000 0000000       000000000001111100    0111


Q ss_pred             ecC-CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEe--
Q 012367          297 IEE-SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS--  369 (465)
Q Consensus       297 ~~~-~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs--  369 (465)
                      ... ..++.+ -....|.++.++.+. |+.+-.+. |.|||+++.+.++++.    +...+.++.+++ .+.|++--+  
T Consensus        75 ~Kk~~~ICe~-~fpt~IL~VrmNr~R-LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~  150 (391)
T KOG2110|consen   75 FKKKTTICEI-FFPTSILAVRMNRKR-LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGST  150 (391)
T ss_pred             cccCceEEEE-ecCCceEEEEEccce-EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCC
Confidence            111 111111 134678888877655 44444444 9999999999999985    334566666666 555776532  


Q ss_pred             CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCc-EEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~  447 (465)
                      ..|.|.|||+.+-+.+. +..|.+.+-+++|+|+|.+||+++..|+ ||+|.+.++++.++ +    ++......|.++.
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e-F----RRG~~~~~IySL~  225 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE-F----RRGTYPVSIYSLS  225 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee-e----eCCceeeEEEEEE
Confidence            25889999999877665 7789999999999999999999999998 58999998876443 2    2222357899999


Q ss_pred             EeecCCcc
Q 012367          448 GRISKNYD  455 (465)
Q Consensus       448 f~p~gs~d  455 (465)
                      |+|+++|.
T Consensus       226 Fs~ds~~L  233 (391)
T KOG2110|consen  226 FSPDSQFL  233 (391)
T ss_pred             ECCCCCeE
Confidence            99998773

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.36  E-value=4.8e-11  Score=110.60  Aligned_cols=199  Identities=17%  Similarity=0.300  Sum_probs=129.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-------CC-ceee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-------PD-EVFQ  296 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~  296 (465)
                      ...+.|||||..|++-++|..+++|++.........    ...........+.+......+..++.       |. ..|.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCC----CCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            457899999999999999999999998642221110    00000000001111111111111111       00 0010


Q ss_pred             e--cCCcceee-----------e--ccccce---EEEEecCCCEEEEEeCCCeEEEEeC-CCCeEe---EE-----ecCC
Q 012367          297 I--EESPLQEL-----------H--GHKGDV---LDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCL---NV-----FDHH  349 (465)
Q Consensus       297 ~--~~~~~~~~-----------~--gh~~~V---~~l~~s~~~~l~s~s~DgtV~lWD~-~~~~~l---~~-----~~h~  349 (465)
                      .  ...|++.+           .  .|...+   .+++|+|+|--+.++....|+++|+ +.|.--   .+     ++..
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            0  12233222           1  243333   5899999986666777899999999 555321   22     2346


Q ss_pred             CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceee
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL  427 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~  427 (465)
                      +-+.|++|+|.+...++.|+....+-|+.-..+.+.. +.+|.+.|+.++|.++|+.|.+|.. +-.|-.||++....++
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            7899999999888899999999999999877766554 6789999999999999999999987 6789999999765544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.2e-11  Score=123.45  Aligned_cols=196  Identities=13%  Similarity=0.171  Sum_probs=124.6

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCC-CcccccCCC-eEEeccCCCCceeEe
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDG-GFGSNAKEG-KIKFGKKKSSHVPVV  289 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~  289 (465)
                      .+.+..|...|...+|||||++||.++.+   ..|.+||+.++........... .......++ .+.+........   
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~---  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVL---  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcE---
Confidence            35567889999999999999999988754   3699999987654322111110 000111111 122111111100   


Q ss_pred             cCCcee--eecCCcceeeeccccceEEEEecCCC-EEE-EEeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCE
Q 012367          290 IPDEVF--QIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       290 ~~~~~~--~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~  364 (465)
                         .+|  +........+..|...+....|+|++ .|+ ++..++...||++... .....+.+..  .++.|+| ++++
T Consensus       273 ---~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~  346 (429)
T PRK01742        273 ---NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKT  346 (429)
T ss_pred             ---EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCE
Confidence               122  22334455666777788899999986 455 4446788888876432 2223334443  4678999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      |+.++.++ +.+||+.++....+... ....++.|+|||++|+.++.+|.+.+|.+.
T Consensus       347 ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        347 LVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            98887765 56699988876544332 234678899999999999999998888764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=6.7e-11  Score=121.38  Aligned_cols=183  Identities=13%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|.+.|.+.+|+|||+.||..+.   +..|.+||+.++..                                    
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------------------------------------  238 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------------------------------------  238 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------------------------------------
Confidence            456688899999999999999888764   46899999876422                                    


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                                ..+..+.+.+...+|+|++ .| ++.+.++.  |.+||+.++.......+.......+|+| +++.++..
T Consensus       239 ----------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~  307 (435)
T PRK05137        239 ----------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFE  307 (435)
T ss_pred             ----------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEE
Confidence                      1122344566778999987 44 46666655  7778998887655545666677899999 99988877


Q ss_pred             eC-CC--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       369 s~-Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +. ++  .|.+||+.++....+......+....|+|||+.|+..+.+   ..|.+||+.++....  +.       ....
T Consensus       308 s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--lt-------~~~~  378 (435)
T PRK05137        308 SDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--LT-------SGFL  378 (435)
T ss_pred             ECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--cc-------CCCC
Confidence            64 33  6888898887766655555567778999999999887654   357778876554322  11       1123


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      +.+..|+|+|..
T Consensus       379 ~~~p~~spDG~~  390 (435)
T PRK05137        379 VEGPTWAPNGRV  390 (435)
T ss_pred             CCCCeECCCCCE
Confidence            556677777653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=5.6e-11  Score=117.56  Aligned_cols=234  Identities=20%  Similarity=0.238  Sum_probs=147.6

Q ss_pred             hccccccccccccchhhhccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec
Q 012367          201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  279 (465)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~-LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (465)
                      +.++....+..+.+.|.| +|...-+.|..+|||+| +|||..--.|++||+.+......-......+      ....+.
T Consensus        31 ~lkkd~~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V------~feiLs  103 (703)
T KOG2321|consen   31 QLKKDVDYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVV------DFEILS  103 (703)
T ss_pred             HHhhchHHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccce------eEEEec
Confidence            344444445556666777 68888999999999996 5677788899999998754332211111110      001111


Q ss_pred             cCCCCceeEecCCceeeecCCcceeeec-c-----ccceEEEEec-CCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCc
Q 012367          280 KKKSSHVPVVIPDEVFQIEESPLQELHG-H-----KGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY  351 (465)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h-----~~~V~~l~~s-~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~  351 (465)
                      ...+.. +....+....     ++...| |     ...-.+|+++ |..-|+.++....|+-+++..|+.+..|. ....
T Consensus       104 DD~SK~-v~L~~DR~Ie-----fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~  177 (703)
T KOG2321|consen  104 DDYSKS-VFLQNDRTIE-----FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE  177 (703)
T ss_pred             cchhhh-eEeecCceee-----ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc
Confidence            110000 0000000000     000001 1     1122456665 34345555555678888999999999996 4479


Q ss_pred             eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-------ccCCC-----CeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------ADVRD-----VISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-------~~~~~-----~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      +++|..++ ...+|++|+.+|.|-.||.++...+..       ..|..     .|+++.|+.+|-.+++|+.+|.+.|||
T Consensus       178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            99999999 778999999999999999988654432       12222     399999999999999999999999999


Q ss_pred             ecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          420 ASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +++.+..+..-  |+    -.-+|..+.|.+.+..
T Consensus       257 LRa~~pl~~kd--h~----~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  257 LRASKPLLVKD--HG----YELPIKKLDWQDTDQQ  285 (703)
T ss_pred             cccCCceeecc--cC----CccceeeecccccCCC
Confidence            99876544321  11    2256777777666433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.35  E-value=2.2e-11  Score=111.32  Aligned_cols=198  Identities=15%  Similarity=0.226  Sum_probs=142.6

Q ss_pred             cCCCcEEEEEECCCCC-----EEEEEeCCCcEEEEecCCce--eeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          220 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSVA--ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~-----~LaSgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      .|.-+++.+-|.|+..     +|||.|.  .+|+|.+....  ........                             
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~-----------------------------  142 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLN-----------------------------  142 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhc-----------------------------
Confidence            6899999999999763     6777654  69999987421  11100000                             


Q ss_pred             ceeeecCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeE----eEEecCCCceEEEEEccCCCCEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~----l~~~~h~~~V~~i~fsp~~~~~l~  366 (465)
                               ...-..+.+++++..|+.  -+++.++|-|.|..|||+.++..    ...+.|...|..|+|.....+.|+
T Consensus       143 ---------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA  213 (364)
T KOG0290|consen  143 ---------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA  213 (364)
T ss_pred             ---------cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence                     000123667999999985  36899999999999999998733    233479999999999986678999


Q ss_pred             EEeCCCcEEEEeCCCCeEEe---cccC-CCCeEEEEEee-CCCEEEEEEcC-CcEEEEEecCCceeeeEeeecCcccccC
Q 012367          367 SGSIDGKVRIWGVCEKRVVD---WADV-RDVISAICYIP-DGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~---~~~~-~~~V~sv~~sp-dg~~l~sgs~d-G~v~iwd~~~~~~~~~~~~~~~~~~~~~  440 (465)
                      +.|.||.||+||++...--+   -... ..+...++|++ |-+++++-..| ..|.|.|++....++..+..|      .
T Consensus       214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H------~  287 (364)
T KOG0290|consen  214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH------Q  287 (364)
T ss_pred             EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC------c
Confidence            99999999999998754332   2222 56788899998 45677776665 568999999877766544433      4


Q ss_pred             CceeeEEEeecC-------Ccc-ceeeeecC
Q 012367          441 NKITGIQGRISK-------NYD-NFRRFQTP  463 (465)
Q Consensus       441 ~~It~~~f~p~g-------s~d-~~~~~~~p  463 (465)
                      ..|.++++.|..       ..| ...+|+.+
T Consensus       288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ccccceEecCCCCceeeecCCcceEEEEecc
Confidence            789999998862       334 36777654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.34  E-value=6.2e-12  Score=125.24  Aligned_cols=133  Identities=21%  Similarity=0.388  Sum_probs=109.8

Q ss_pred             cceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEe------EEecCCC-ceEEEEEccCCCCEEEEEeCC
Q 012367          301 PLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCL------NVFDHHN-YVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l------~~~~h~~-~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .+..+.+|...|+++.|+|  +.+|++||.|..|+||.+..+...      ..++|.+ .|.|+.|+|+.+.++++++ .
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~  149 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-H  149 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence            4566789999999999998  679999999999999999755322      2244554 7899999997677777665 7


Q ss_pred             CcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          372 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       372 g~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      |+++|||+.+++.+ ...+|.+.|.+..|+.||+.|++++.|..|+|||.+....+......|+
T Consensus       150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~  213 (1012)
T KOG1445|consen  150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG  213 (1012)
T ss_pred             ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence            99999999987755 4889999999999999999999999999999999987766555444454

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.1e-10  Score=122.45  Aligned_cols=238  Identities=15%  Similarity=0.185  Sum_probs=150.1

Q ss_pred             CCcEEEEEECC--CCCEEEEEeCCCcEEEEecCC-----ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc-
Q 012367          222 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTS-----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-  293 (465)
Q Consensus       222 ~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (465)
                      ...|+.|.+-.  |..+|++|+.||.||||+--.     .+.+.......+........+.+..|....+...+..... 
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            44588888854  445999999999999997422     1222222222222222222333334444444443333222 


Q ss_pred             --eeeecCC-cceee-eccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCe---EeEEe-cCCCc--eEEEEEccCC
Q 012367          294 --VFQIEES-PLQEL-HGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNY--VTCVQFNPID  361 (465)
Q Consensus       294 --~~~~~~~-~~~~~-~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~---~l~~~-~h~~~--V~~i~fsp~~  361 (465)
                        +|+.... .++.+ .+-..-|+++.-+-  ++.+++|-.||.|++||.+...   .+... .|+..  |..+.+.+..
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence              2333211 11211 23344566665442  4699999999999999997653   23444 47776  9999999833


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEe---cccC---CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVD---WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~---~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~  435 (465)
                      -..+++|+.+|.|++||++......   ...|   .+.++++..|++...+++|+. +.|.||++.+.++....  .+..
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k--~n~~ 1345 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK--YNPG 1345 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc--cCcc
Confidence            3459999999999999999843222   2222   235999999999999999999 99999999988765432  2222


Q ss_pred             ccc-cCCceeeEEEeec------CCccceeeeec
Q 012367          436 KKT-SGNKITGIQGRIS------KNYDNFRRFQT  462 (465)
Q Consensus       436 ~~~-~~~~It~~~f~p~------gs~d~~~~~~~  462 (465)
                      ... ....++++.|+|-      |..|++.-+..
T Consensus      1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            222 2356789999986      77777665553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.32  E-value=5e-11  Score=107.65  Aligned_cols=239  Identities=14%  Similarity=0.188  Sum_probs=152.0

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec------------CCCCcccccCCCeEEeccC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT------------DDGGFGSNAKEGKIKFGKK  281 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  281 (465)
                      +...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+....+....            +.........+..+..+..
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            4456779999999999988875 99999999999999987544332221            1111111222222222221


Q ss_pred             CCC-ce--------------------------eEecCCce-ee---ec-CCccee------eeccccceEEEEecC-CC-
Q 012367          282 KSS-HV--------------------------PVVIPDEV-FQ---IE-ESPLQE------LHGHKGDVLDLAWSN-SN-  321 (465)
Q Consensus       282 ~~~-~~--------------------------~~~~~~~~-~~---~~-~~~~~~------~~gh~~~V~~l~~s~-~~-  321 (465)
                      ..+ .+                          ....+... ..   .+ ..+...      -.+..+.|.+..|.- .+ 
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            110 00                          00000000 00   00 000000      113446677777642 22 


Q ss_pred             --EEEEEeCCCeEEEEeCCCCeEeEEe-----------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeEEe
Q 012367          322 --YLLSCSMDKTVRMWQVGCNQCLNVF-----------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVD  386 (465)
Q Consensus       322 --~l~s~s~DgtV~lWD~~~~~~l~~~-----------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~~~~~  386 (465)
                        +|++|..+|.|.+||+.++..+-.+           .|..+|.++.|.+ .-+.=++|+.+..+..|.+..  +.+..
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccc
Confidence              6789999999999999987433222           3889999999998 666678889999999999853  32221


Q ss_pred             ---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec------CCccc-
Q 012367          387 ---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS------KNYDN-  456 (465)
Q Consensus       387 ---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~------gs~d~-  456 (465)
                         ..-.+-.|..+.+-||++.+++++.||+||+|..++... +..+.+|.      ..|..++|+|+      ++.|. 
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-LAVLkyHs------agvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-LAVLKYHS------AGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-hhhhhhhh------cceeEEEeCCCCchhhhccCCce
Confidence               222345688999999999999999999999999987643 33555554      67999999998      45565 


Q ss_pred             eeeee
Q 012367          457 FRRFQ  461 (465)
Q Consensus       457 ~~~~~  461 (465)
                      +-+|.
T Consensus       317 ISLWk  321 (323)
T KOG0322|consen  317 ISLWK  321 (323)
T ss_pred             EEeee
Confidence            55554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.1e-10  Score=119.57  Aligned_cols=164  Identities=18%  Similarity=0.169  Sum_probs=115.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|...+.+.+|+|||++||.++.+   ..|.+||+.++...                                   
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-----------------------------------  241 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-----------------------------------  241 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-----------------------------------
Confidence            4566788899999999999999988743   46889998764321                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                                 .+..+.+.....+|+|++ .| ++.+.++  .|.+||+.++.......+.......+|+| ++++|+.+
T Consensus       242 -----------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~  309 (433)
T PRK04922        242 -----------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFT  309 (433)
T ss_pred             -----------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence                       111122334467899986 44 4556555  59999999887655445555567889999 99988877


Q ss_pred             eC-CCc--EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCcee
Q 012367          369 SI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLK  426 (465)
Q Consensus       369 s~-Dg~--I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~~  426 (465)
                      +. ++.  |.++|+.++....+.........++|+|||+.|+..+.++   .|.+||+.+++..
T Consensus       310 sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        310 SDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            64 444  7777777776554433334456789999999998876543   5899999877653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.5e-10  Score=119.88  Aligned_cols=234  Identities=15%  Similarity=0.214  Sum_probs=153.6

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccC----C--CeEEecc
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK----E--GKIKFGK  280 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~---~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~  280 (465)
                      ....+...+.+|+.+++.+.+.|...   ++.+++.||+|++||...+..................    .  .....+.
T Consensus        45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~  124 (792)
T KOG1963|consen   45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV  124 (792)
T ss_pred             chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence            34456678899999999999988544   7889999999999999887665444333222111100    0  0000111


Q ss_pred             CCCCceeEec---CCce--eee---cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe------
Q 012367          281 KKSSHVPVVI---PDEV--FQI---EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF------  346 (465)
Q Consensus       281 ~~~~~~~~~~---~~~~--~~~---~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~------  346 (465)
                      ..........   ....  +.+   ...+...+.+|.. -.+|..++.+.+...-.+..+.+|....+. ....      
T Consensus       125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~  202 (792)
T KOG1963|consen  125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITV  202 (792)
T ss_pred             ccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhh
Confidence            1100000000   0000  000   0111112223333 356777888777777778889999998755 1111      


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-----~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      .|.-.++|.+++| +++++++|..||.|.+|.--.     .....+.=|...|++++|+++|.+|++|+..|.+-+|.+.
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            2666789999999 999999999999999995422     1222344488899999999999999999999999999999


Q ss_pred             CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +++.++.        -.-+..|.+++++|++.+
T Consensus       282 T~~kqfL--------PRLgs~I~~i~vS~ds~~  306 (792)
T KOG1963|consen  282 TGKKQFL--------PRLGSPILHIVVSPDSDL  306 (792)
T ss_pred             CCCcccc--------cccCCeeEEEEEcCCCCe
Confidence            9875432        112478999999999876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.31  E-value=3.9e-11  Score=111.14  Aligned_cols=169  Identities=17%  Similarity=0.268  Sum_probs=136.3

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...++++.|...|++|.|+|..+.|+|++.|..-.||....+.                                     
T Consensus        46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~-------------------------------------   88 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-------------------------------------   88 (361)
T ss_pred             eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC-------------------------------------
Confidence            3458899999999999999999999999999999999874321                                     


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEE---e--cCCCceEEEEEccCCCCEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV---F--DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~---~--~h~~~V~~i~fsp~~~~~l~  366 (465)
                           .-+|.-.+.-|+...+++.|+|. +.+++||..+.|.||-.+...--.+   +  .+...|+++.|+| ++-+++
T Consensus        89 -----~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLla  162 (361)
T KOG1523|consen   89 -----TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLA  162 (361)
T ss_pred             -----eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceec
Confidence                 12455556678999999999996 6999999999999998765443222   2  3567899999999 999999


Q ss_pred             EEeCCCcEEEEeCC-----C-------------CeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          367 SGSIDGKVRIWGVC-----E-------------KRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       367 sgs~Dg~I~iwd~~-----~-------------~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      +||.|++.|||..-     .             |+++. +....+.|..+.|+|+|..|+-.+.|+++.+=|.....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999999999651     1             12222 33566889999999999999999999999999987654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.29  E-value=1.5e-10  Score=105.01  Aligned_cols=115  Identities=20%  Similarity=0.472  Sum_probs=90.2

Q ss_pred             CCCcEEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          221 HKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      +.++|.+++|+|+|+.||..  ..++.|.+||+..                                             
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------------------------------------   92 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------------------------------------   92 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------------------------------------
Confidence            45679999999999986554  4678999999862                                             


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEeC---CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC----
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----  370 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~---DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~----  370 (465)
                       +++..+  +...+..+.|+|+| +|++++.   .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++..    
T Consensus        93 -~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~  167 (194)
T PF08662_consen   93 -KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRL  167 (194)
T ss_pred             -cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccce
Confidence             223333  34567889999986 7777664   4679999999999998887765 68999999 9999999875    


Q ss_pred             --CCcEEEEeCCCCeEE
Q 012367          371 --DGKVRIWGVCEKRVV  385 (465)
Q Consensus       371 --Dg~I~iwd~~~~~~~  385 (465)
                        |+.++||+.....+.
T Consensus       168 ~~dng~~Iw~~~G~~l~  184 (194)
T PF08662_consen  168 RVDNGFKIWSFQGRLLY  184 (194)
T ss_pred             eccccEEEEEecCeEeE
Confidence              788999998655443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.28  E-value=4.6e-12  Score=129.74  Aligned_cols=226  Identities=15%  Similarity=0.264  Sum_probs=145.4

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      +....-.+|+|.       ...-.+...+.||.+.|+.++.+.+..++|++|.|..|++|.+..+..+.......+.+..
T Consensus       207 tgsdd~lvKiwS-------~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavta  279 (1113)
T KOG0644|consen  207 TGSDDRLVKIWS-------METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTA  279 (1113)
T ss_pred             ecCccceeeeee-------ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceee
Confidence            334445556653       2334556778899999999999999999999999999999999987766655555444332


Q ss_pred             ccCCCeEEeccCCCCceeEecCC-ceeeecCCcce--------eee----------------ccccceEEEEecCC----
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPD-EVFQIEESPLQ--------ELH----------------GHKGDVLDLAWSNS----  320 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~----------------gh~~~V~~l~~s~~----  320 (465)
                      ......-  .........++... ........|..        .+.                .....+.+++|...    
T Consensus       280 iafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif  357 (1113)
T KOG0644|consen  280 IAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF  357 (1113)
T ss_pred             eccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEE
Confidence            2222111  00111112222222 11111111110        000                00111222222221    


Q ss_pred             --------CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--ccc
Q 012367          321 --------NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WAD  389 (465)
Q Consensus       321 --------~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~  389 (465)
                              .+.+++-.+..+++|++.+|+.++.. .|.+++..+.++|.+.+...+++.||+..|||+..+..+.  ..+
T Consensus       358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence                    13334445566788888888777776 5889999999999999999999999999999998776554  344


Q ss_pred             CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       390 ~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                       +..+..-+|++||..++....-|.+.|.....++-
T Consensus       438 -h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  438 -HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             -cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence             56677789999999999999999999988765444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.28  E-value=1.6e-10  Score=113.65  Aligned_cols=134  Identities=14%  Similarity=0.261  Sum_probs=105.8

Q ss_pred             ccceEEEEecCC--CEEEEEeCCCeEEEEeCCC--------------CeEeEE---ec------------CCCceEEEEE
Q 012367          309 KGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC--------------NQCLNV---FD------------HHNYVTCVQF  357 (465)
Q Consensus       309 ~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~--------------~~~l~~---~~------------h~~~V~~i~f  357 (465)
                      ...|+++.|-|.  +.++.+-.+|.+.+||..-              +.....   +.            ....|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            478999999874  5888999999999997521              111111   11            2346788999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~  436 (465)
                      +| |+.+||+.|.||.+||||..+.+++. ....-+...|++|+|||++|++|+.|-.|.||.+...++.   ..-|+  
T Consensus       299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV---ARGqG--  372 (636)
T KOG2394|consen  299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV---ARGQG--  372 (636)
T ss_pred             cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE---Eeccc--
Confidence            99 99999999999999999999988775 4456678999999999999999999999999999887663   23333  


Q ss_pred             cccCCceeeEEEee
Q 012367          437 KTSGNKITGIQGRI  450 (465)
Q Consensus       437 ~~~~~~It~~~f~p  450 (465)
                        |...|+.++|-|
T Consensus       373 --HkSWVs~VaFDp  384 (636)
T KOG2394|consen  373 --HKSWVSVVAFDP  384 (636)
T ss_pred             --cccceeeEeecc
Confidence              447899998885

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=3.6e-10  Score=115.63  Aligned_cols=164  Identities=16%  Similarity=0.060  Sum_probs=113.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..+...+.+.+|||||+.||..+.   +..|.+|++.++...                                   
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-----------------------------------  236 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------------------  236 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence            445567788999999999998886642   456888888764321                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEE-EEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                              .+..+.+|   +...+|+|++ .|+ +.+.++  .|.+||+.++.......+...+....|+| +++.|+..
T Consensus       237 --------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~  304 (429)
T PRK03629        237 --------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT  304 (429)
T ss_pred             --------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence                    11122233   3357899987 454 334454  59999999887766655666788999999 99988777


Q ss_pred             eCC-Cc--EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCcee
Q 012367          369 SID-GK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLK  426 (465)
Q Consensus       369 s~D-g~--I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~  426 (465)
                      +.+ +.  |.++|+.++....+..........+|+|||+.|+..+.+   ..+.+||+.++...
T Consensus       305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            654 44  555577777665544444556778999999998876653   35788898877643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.27  E-value=3.4e-10  Score=116.60  Aligned_cols=232  Identities=15%  Similarity=0.138  Sum_probs=139.5

Q ss_pred             CCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeee---cCCCCcccccCCCeEEeccC---CCCceeEecCCc
Q 012367          221 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSF---TDDGGFGSNAKEGKIKFGKK---KSSHVPVVIPDE  293 (465)
Q Consensus       221 H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  293 (465)
                      -..+|+|++|+|. ..+||.|..+|.|-+||+..........   ....+...+    ...++..   ..........+.
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v----~~vvW~~~~~~~~f~s~ssDG~  316 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV----TAVVWLQNEHNTEFFSLSSDGS  316 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe----EEEEEeccCCCCceEEEecCCc
Confidence            4678999999994 5588899999999999998755421100   000000000    0000000   001111111121


Q ss_pred             eeeec---------CCcceeee------ccccceEEEEecCC--CEEEEEeCCCeEEEEe---CCCCe-----EeEEe-c
Q 012367          294 VFQIE---------ESPLQELH------GHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQ---VGCNQ-----CLNVF-D  347 (465)
Q Consensus       294 ~~~~~---------~~~~~~~~------gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD---~~~~~-----~l~~~-~  347 (465)
                      +..+.         ..+.....      .-...+++++|.+.  ..++.|+.+|.|.-=.   ...+.     .+..+ .
T Consensus       317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~  396 (555)
T KOG1587|consen  317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT  396 (555)
T ss_pred             EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence            11110         00011111      12356888999874  4899999999987733   22222     12122 4


Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC-C-CeEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-E-KRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~-~-~~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      |.+.|+++.++|....+|.+++ |.+|+||.-. . ..+..+..+...|++++|+|-. ..|+++..||.+.+||+....
T Consensus       397 h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             cCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            8899999999998888888887 9999999876 3 4444567777889999999965 578888889999999998665


Q ss_pred             eeee-EeeecCcccccCCceeeEEEeec-------CCccceeeeecC
Q 012367          425 LKLE-KVDFHDRKKTSGNKITGIQGRIS-------KNYDNFRRFQTP  463 (465)
Q Consensus       425 ~~~~-~~~~~~~~~~~~~~It~~~f~p~-------gs~d~~~~~~~p  463 (465)
                      .... .....      ....+-+.+++.       +..++++++..+
T Consensus       476 ~~Pv~s~~~~------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  476 EEPVLSQKVC------SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cCCccccccc------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            4322 22222      233444444443       444567777764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.27  E-value=2.5e-11  Score=117.27  Aligned_cols=189  Identities=15%  Similarity=0.186  Sum_probs=144.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCC--CeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE--GKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       226 ~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      ..+.++.+|++|+.|+.-|.|-.+|+.+....+.........+.....  ..+.++..  ...      .+|+-.+..++
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK--~y~------yvYD~~GtElH  204 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK--KYV------YVYDNNGTELH  204 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh--ceE------EEecCCCcEEe
Confidence            478999999999999999999999999988877665544322211111  11111110  111      11222334455


Q ss_pred             eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~  381 (465)
                      -+..| ..|..+.|-|.. +|++++..|.++.-|+.+|+.+..+. ..+.+..++-+| -...+-+|...|+|.+|....
T Consensus       205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC
Confidence            44444 678889999976 67788889999999999999999985 566888889999 778899999999999999987


Q ss_pred             CeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          382 KRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       382 ~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      ...+ .+.-|.+.|.+|++.++|++++|.+.|..|+|||++.-.
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            6654 578899999999999999999999999999999999765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.26  E-value=3.4e-10  Score=120.66  Aligned_cols=216  Identities=14%  Similarity=0.213  Sum_probs=135.1

Q ss_pred             ccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceee-------eeeecCCCC---cccccCCCeEEecc
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAAS-------CKSFTDDGG---FGSNAKEGKIKFGK  280 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~  280 (465)
                      -.....|+.|...|..++.++.. .+++|||.||+||||+.......       +.+......   ...+.......++.
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            34456778899999999998765 89999999999999998653222       111101111   11112222222221


Q ss_pred             CCCCceeEecCC-ceeeecCCcceeeeccc-cceEEE-EecC--CC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCc
Q 012367          281 KKSSHVPVVIPD-EVFQIEESPLQELHGHK-GDVLDL-AWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNY  351 (465)
Q Consensus       281 ~~~~~~~~~~~~-~~~~~~~~~~~~~~gh~-~~V~~l-~~s~--~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~  351 (465)
                      ..+......... .+-.......+....+. +.+.++ ++..  .. .|+.+..-+.|..||++....+...+   .++.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            111111111111 01111111111122222 333333 3332  12 68888888999999999887766664   5678


Q ss_pred             eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCC---CEEEEEE--cCCcEEEEEecCCc
Q 012367          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDG---KGFIVGS--ITGTCHFYKASGND  424 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg---~~l~sgs--~dG~v~iwd~~~~~  424 (465)
                      |++++.+| .+++++.|...|.+.+||++-+..+.  ..++..+|+.++.+|-.   ...++++  ..+.|.+|++.++.
T Consensus      1198 vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             eeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            99999999 99999999999999999999988775  34466788888888743   3444444  47889999999886


Q ss_pred             eeee
Q 012367          425 LKLE  428 (465)
Q Consensus       425 ~~~~  428 (465)
                      -+..
T Consensus      1277 ~~~v 1280 (1431)
T KOG1240|consen 1277 RQTV 1280 (1431)
T ss_pred             ceEE
Confidence            5544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1.3e-10  Score=109.97  Aligned_cols=232  Identities=13%  Similarity=0.134  Sum_probs=157.0

Q ss_pred             CCCCCcchhhHHhhccccccccccccchhhh-ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC
Q 012367          188 NSEKPKANKMEVKQNKKKCMEFTALYTSQEI-QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG  266 (465)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~  266 (465)
                      ..+....-++.+|.-..-. .-...++++.. ..|..-|.|++|....++|++|+.+++|...|+.+.+.+...      
T Consensus        71 L~SGGDD~~~~~W~~de~~-~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~------  143 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELM-VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA------  143 (609)
T ss_pred             EeecCCcceeeeechHHHH-hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee------
Confidence            3444445555555332211 11122333433 356789999999999999999999999999999874332111      


Q ss_pred             cccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCe-EeE
Q 012367          267 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQ-CLN  344 (465)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~-~l~  344 (465)
                                                           .-....+.|..+..+| ++.|++.+.++.|.+||.+..+ .+.
T Consensus       144 -------------------------------------~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~  186 (609)
T KOG4227|consen  144 -------------------------------------NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS  186 (609)
T ss_pred             -------------------------------------cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence                                                 1112345899999998 5799999999999999998655 222


Q ss_pred             Ee---cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE--Ee---cccCC---CCeEEEEEeeCCCEEEEEEcCC
Q 012367          345 VF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VD---WADVR---DVISAICYIPDGKGFIVGSITG  413 (465)
Q Consensus       345 ~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~--~~---~~~~~---~~V~sv~~spdg~~l~sgs~dG  413 (465)
                      .+   ........+.|+|....+|++.+..+-+.+||++...-  ..   ..+..   ..-.++.|+|+|..|++--..-
T Consensus       187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK  266 (609)
T ss_pred             eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence            22   35556788999999999999999999999999986532  11   11222   2235688999999988876666


Q ss_pred             cEEEEEecCCceeeeEeeecCcccccCCceeeEEEee-----cCCcc-ceeeeecC
Q 012367          414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI-----SKNYD-NFRRFQTP  463 (465)
Q Consensus       414 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p-----~gs~d-~~~~~~~p  463 (465)
                      .-.+||+....+.+.+.+....--.....|.++.|.-     +|+.+ ++.+|..|
T Consensus       267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecC
Confidence            6678999887776655542221122335667776653     35555 58999888

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.5e-09  Score=114.27  Aligned_cols=203  Identities=18%  Similarity=0.280  Sum_probs=133.8

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC-CCceeEecCCceee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK-SSHVPVVIPDEVFQ  296 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  296 (465)
                      +.+..++-..+.|+|-...++++...-.|+|||.+.+.....+......   ......+.+.... .....+...+++..
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---DTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---CCccceeeeecccchhheeeeccCceEE
Confidence            3345556778999999889999998889999999887664433322211   1111111111111 11111111111111


Q ss_pred             e---------cCCcceee---ec----cccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEE
Q 012367          297 I---------EESPLQEL---HG----HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF  357 (465)
Q Consensus       297 ~---------~~~~~~~~---~g----h~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~f  357 (465)
                      +         ..+.+..+   .+    -.+.-.-+.|.. .|+|++++.-..|+|||+....+...+.  ...-|+++.-
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence            1         00111111   11    111113456664 4788888888999999999988888773  5567888887


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCe----EEecccCCCC--eEEEEEeeCCCE-EEEEEcCCcEEEEEecCC
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDV--ISAICYIPDGKG-FIVGSITGTCHFYKASGN  423 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~--V~sv~~spdg~~-l~sgs~dG~v~iwd~~~~  423 (465)
                      +-..++.++.|..||.||+||.+...    +..+..|...  |..+.+.+.|-. |++|+.+|.|++||++..
T Consensus      1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            77678999999999999999997643    3457788877  999999998865 999999999999999984

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=5e-11  Score=118.34  Aligned_cols=186  Identities=17%  Similarity=0.248  Sum_probs=139.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      -.|..+|+.|.||..|.||||...+   ..|.|+++.....                                       
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------------------------------------  558 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------------------------------------  558 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------------------------------
Confidence            3689999999999999999998764   4577777654221                                       


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                            ...|.-..+.|.++.|+|.. +|+.++. ..|+|||+..+..++.+ .....|..++.+| .|..|+.|+.|+.
T Consensus       559 ------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k  630 (733)
T KOG0650|consen  559 ------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKK  630 (733)
T ss_pred             ------cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCe
Confidence                  11222345678999999975 5555543 68999999887776666 4566899999999 9999999999999


Q ss_pred             EEEEeCCCC--eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec------CCceeeeEeeecCcccccCCceee
Q 012367          374 VRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS------GNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       374 I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~------~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      +..||+.-.  ....+..|...|++|+||+.-..+++|+.||++.||.-.      .+.+.+..-.+.++.+.....|..
T Consensus       631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd  710 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD  710 (733)
T ss_pred             eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence            999998643  444578899999999999999999999999999988532      222222233445555555556777


Q ss_pred             EEEeec
Q 012367          446 IQGRIS  451 (465)
Q Consensus       446 ~~f~p~  451 (465)
                      ..|+|.
T Consensus       711 ~~wHP~  716 (733)
T KOG0650|consen  711 TIWHPR  716 (733)
T ss_pred             ecccCC
Confidence            777776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.25  E-value=1.7e-09  Score=106.96  Aligned_cols=189  Identities=12%  Similarity=0.140  Sum_probs=119.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCC-ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          221 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      +.+....|+++|++++|+.++ .++.|.+|++.. +....                                        
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~----------------------------------------   72 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF----------------------------------------   72 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE----------------------------------------
Confidence            345577899999999887664 588899999863 11100                                        


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCC-C---eEeEEecCCCceEEEEEccCCCCEEEEE-eCC
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-N---QCLNVFDHHNYVTCVQFNPIDDNYFISG-SID  371 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~-~---~~l~~~~h~~~V~~i~fsp~~~~~l~sg-s~D  371 (465)
                         +... ...+....++++|++ +|++++ .++.|.+|++.+ +   ..+..+.+...+.+++++| ++++++++ ..+
T Consensus        73 ---~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~  147 (330)
T PRK11028         73 ---AAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKE  147 (330)
T ss_pred             ---eeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCC
Confidence               0000 112235678999876 555544 589999999964 2   2333334445577889999 88877554 456


Q ss_pred             CcEEEEeCCCC-eEEe------cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC--Cceeee-EeeecCcccccC
Q 012367          372 GKVRIWGVCEK-RVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKLE-KVDFHDRKKTSG  440 (465)
Q Consensus       372 g~I~iwd~~~~-~~~~------~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~--~~~~~~-~~~~~~~~~~~~  440 (465)
                      +.|.+||+.+. .+..      ..........++|+|+|++++++.. ++.|.+|++..  +++... .+..........
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            99999999763 2211      1122345678999999999988877 89999999984  343322 222111111111


Q ss_pred             CceeeEEEeecCCc
Q 012367          441 NKITGIQGRISKNY  454 (465)
Q Consensus       441 ~~It~~~f~p~gs~  454 (465)
                      ....++.++|++.+
T Consensus       228 ~~~~~i~~~pdg~~  241 (330)
T PRK11028        228 RWAADIHITPDGRH  241 (330)
T ss_pred             ccceeEEECCCCCE
Confidence            23345777887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.25  E-value=5e-10  Score=114.29  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=117.8

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|...+...+|+|+|++||.++.+   ..|.+||+.++...                                   
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-----------------------------------  227 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-----------------------------------  227 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------------------
Confidence            4455677789999999999999887654   47999998764221                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                                 .+..+.+.+.+++|+|++ .| ++.+.++  .|.+||+.++.......+........|+| +++.|+..
T Consensus       228 -----------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~  295 (417)
T TIGR02800       228 -----------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT  295 (417)
T ss_pred             -----------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence                       111233445568899986 34 4555444  58999998876555445555566789999 88888766


Q ss_pred             eCC-C--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCce
Q 012367          369 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDL  425 (465)
Q Consensus       369 s~D-g--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~  425 (465)
                      +.. +  .|.++|+.++....+..+...+..+.|+|+|+.++.++.++   .|.+||+.++..
T Consensus       296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            543 3  58888888877666655666778899999999999988776   788888877544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=6.3e-10  Score=113.82  Aligned_cols=183  Identities=17%  Similarity=0.129  Sum_probs=118.1

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|...+.+.+|+|||+.||.++.+   ..|.+||+.++...                                   
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-----------------------------------  233 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-----------------------------------  233 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----------------------------------
Confidence            4455788899999999999999887643   35999998764321                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEE-EEeCCCeEEEEe--CCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD--~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                                 .+....+.+...+|+|++ .|+ +.+.++...||.  +..+.......+...+....|+| +++.++..
T Consensus       234 -----------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~  301 (427)
T PRK02889        234 -----------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFT  301 (427)
T ss_pred             -----------EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEE
Confidence                       111122345578999986 454 667788766664  55454333224555567789999 99887766


Q ss_pred             eC-CCcEEEEeC--CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          369 SI-DGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       369 s~-Dg~I~iwd~--~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +. ++...||.+  .++...............+|+|||++|+..+.++   .|.+||+.++....  +. .+      ..
T Consensus       302 s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~--lt-~~------~~  372 (427)
T PRK02889        302 SDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA--LT-DT------TR  372 (427)
T ss_pred             ecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE--cc-CC------CC
Confidence            54 456666654  4554433322233345688999999998877654   69999998776432  21 11      12


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      .....|+|+|.+
T Consensus       373 ~~~p~~spdg~~  384 (427)
T PRK02889        373 DESPSFAPNGRY  384 (427)
T ss_pred             ccCceECCCCCE
Confidence            345677777655

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.3e-10  Score=111.26  Aligned_cols=190  Identities=20%  Similarity=0.295  Sum_probs=132.0

Q ss_pred             ccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367          181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS  260 (465)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~  260 (465)
                      +..+....+....+..++++       +++.+.+.....+|.+.|.+|.|+|||++||+-+.| ..+||++.++......
T Consensus       152 f~~~gs~latgg~dg~lRv~-------~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  152 FNGDGSKLATGGTDGTLRVW-------EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             EcCCCCEeeeccccceEEEE-------ecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            34443334444455555544       567777778888999999999999999999999999 8999999986332211


Q ss_pred             ecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-----EEEEE-eCCCeEEE
Q 012367          261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-----YLLSC-SMDKTVRM  334 (465)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-----~l~s~-s~DgtV~l  334 (465)
                      ..                                           ..-......+.|+.++     ++++. ..-+.|++
T Consensus       224 t~-------------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  224 TP-------------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             CC-------------------------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeE
Confidence            10                                           0011122233343322     22222 22344555


Q ss_pred             EeCCCC---eEeEE---ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEE
Q 012367          335 WQVGCN---QCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGF  406 (465)
Q Consensus       335 WD~~~~---~~l~~---~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l  406 (465)
                      ||+...   ..++.   ......|++++.++ +|++++.|+.||.|-|++..+.+.+.  ...|...|+.+.|+||.+++
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~  339 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL  339 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc
Confidence            554321   12222   23456899999999 99999999999999999999887776  45588899999999999999


Q ss_pred             EEEEcCCcEEEEEecC
Q 012367          407 IVGSITGTCHFYKASG  422 (465)
Q Consensus       407 ~sgs~dG~v~iwd~~~  422 (465)
                      ++-+.+....+..+.-
T Consensus       340 ~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  340 ASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cccccCCceeEEEEee
Confidence            9999999999998765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=4.1e-10  Score=116.71  Aligned_cols=193  Identities=18%  Similarity=0.296  Sum_probs=143.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .|.-.++|.++||+++++|+|..||.|.+|.--....                                         ..
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------------------------~~  241 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------------------------DS  241 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------------------------cc
Confidence            5777799999999999999999999999997432100                                         01


Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      ...+.++-|...|.+++|+++| +|+||+..|.+.+|.+.+++....-+-.++|..+.++| ++++.+....|+.|.+..
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence            2345677799999999999886 99999999999999999998322226888999999999 999999999999999998


Q ss_pred             CCCCeEEe----c--------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecC---cccccCCc
Q 012367          379 VCEKRVVD----W--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHD---RKKTSGNK  442 (465)
Q Consensus       379 ~~~~~~~~----~--------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~---~~~~~~~~  442 (465)
                      ..+.....    +        ....+-.+.++++|.-+.++-.+..|.|.+||+-+....++ ++..++   ........
T Consensus       321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~  400 (792)
T KOG1963|consen  321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG  400 (792)
T ss_pred             ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence            76543221    1        11245578899999778889999999999999987766544 332222   11122345


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      |+.+..+..|++
T Consensus       401 itav~~~~~gs~  412 (792)
T KOG1963|consen  401 ITAVARSRFGSW  412 (792)
T ss_pred             eeeehhhccceE
Confidence            555555555554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3.6e-10  Score=106.30  Aligned_cols=184  Identities=17%  Similarity=0.222  Sum_probs=132.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      .+-.+..++|++.-.-+|++..|-+|+||+-.. .+.+.                                         
T Consensus        97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~-----------------------------------------  134 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK-----------------------------------------  134 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCce-----------------------------------------
Confidence            345688999999777899999999999998764 11110                                         


Q ss_pred             cceeeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCC------------eEeEEec--CCCceEEEEEccCCCCE
Q 012367          301 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCN------------QCLNVFD--HHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~------------~~l~~~~--h~~~V~~i~fsp~~~~~  364 (465)
                         .-......|++++|-|- + .|+.|. -+-|.+|.....            .+...++  .+.+|++++|++ |+..
T Consensus       135 ---Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~  209 (445)
T KOG2139|consen  135 ---LKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI  209 (445)
T ss_pred             ---ecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence               01123468999999985 3 444444 456999976421            1222333  336899999999 9999


Q ss_pred             EEEEeC-CCcEEEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          365 FISGSI-DGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       365 l~sgs~-Dg~I~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +++++. |..|.|||..++..+.+. ...+.++-+.|+|||.+|.+++-|+..++|+.....-....+.       ....
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-------gsgr  282 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-------GSGR  282 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-------cCCc
Confidence            999887 568999999999887755 4556788999999999999999999999996553322222221       2237


Q ss_pred             eeeEEEeecCCcccee
Q 012367          443 ITGIQGRISKNYDNFR  458 (465)
Q Consensus       443 It~~~f~p~gs~d~~~  458 (465)
                      |++-.++|.|++.-+.
T Consensus       283 vqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFA  298 (445)
T ss_pred             eeeeeecCCCCEEEEE
Confidence            8888899998875443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.2e-10  Score=111.50  Aligned_cols=206  Identities=22%  Similarity=0.285  Sum_probs=140.9

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      +.....|.+|.|.|..|.|+..|..|+|||.|..|.+||+....................  .++.+.......  ....
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQa--KFiP~s~d~ti~--~~s~  207 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQA--KFIPFSGDRTIV--TSSR  207 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhh--hccCCCCCcCce--eccc
Confidence            334467889999999999999999999999999999999988665544433222111110  011111111000  0000


Q ss_pred             Cceee---e----cCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe----cCCC---ceEEE
Q 012367          292 DEVFQ---I----EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF----DHHN---YVTCV  355 (465)
Q Consensus       292 ~~~~~---~----~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~---~V~~i  355 (465)
                      ++...   +    .......+..|.+.|..++.-|+  ..|+|++.|+.|.-.|++++.+...+    .+..   ....|
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            00000   0    01123456679999999999886  37999999999999999987654444    2333   57899


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeE------E-ecc------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRV------V-DWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~------~-~~~------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      +.+|.+.+.|++|+.|-.+|+||.+.-..      + .+.      ...-.|++++|+.++.-|+++-.|-.|++|.-.
T Consensus       288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            99998888999999999999999865221      1 122      234569999999999888888889999999554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3.6e-11  Score=118.21  Aligned_cols=124  Identities=25%  Similarity=0.391  Sum_probs=106.8

Q ss_pred             cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccC-CCCEEEEEeCCCcEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSIDGKVRI  376 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~-~~~~l~sgs~Dg~I~i  376 (465)
                      ...++.||++-|.++.|+.+| +|+|||.|..+.|||.-..+.+..+  +|...|.|+.|-|. +.+.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            456788999999999999876 8999999999999999988888888  59999999999995 4567889999999999


Q ss_pred             EeCCCCe-----------EEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367          377 WGVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       377 wd~~~~~-----------~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      ||+...+           ...+.-|...|..++-.|++ ..+.+++.||+++-||++...
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            9997411           11266788999999999998 789999999999999998743

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.18  E-value=3.2e-09  Score=104.92  Aligned_cols=184  Identities=15%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             cEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          224 CIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      ....|+|+|+|++|++++. ++.|.+|++.+.....                                         ..+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-----------------------------------------~~~  119 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-----------------------------------------API  119 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-----------------------------------------Cce
Confidence            4568999999998888774 8899999986421100                                         001


Q ss_pred             eeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeE-------EecCCCceEEEEEccCCCCEEEEEeC-CC
Q 012367          303 QELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLN-------VFDHHNYVTCVQFNPIDDNYFISGSI-DG  372 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~-------~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg  372 (465)
                      ..+. +......++++|++ ++ ++...++.|.+||+.+...+.       ..........+.|+| ++++++++.. ++
T Consensus       120 ~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~  197 (330)
T PRK11028        120 QIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNS  197 (330)
T ss_pred             eecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCC
Confidence            1111 11234567889875 44 566677999999997643221       112334567899999 9999887776 89


Q ss_pred             cEEEEeCCC--CeE--Ee-ccc------CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccC
Q 012367          373 KVRIWGVCE--KRV--VD-WAD------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (465)
Q Consensus       373 ~I~iwd~~~--~~~--~~-~~~------~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~  440 (465)
                      .|.+|++..  +..  +. ...      +......+.++|+|++++++.. ++.|.+|++......+.....    ...+
T Consensus       198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~----~~~~  273 (330)
T PRK11028        198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH----QPTE  273 (330)
T ss_pred             EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE----Eecc
Confidence            999999973  332  21 111      1123446889999999999865 789999999654322211110    0011


Q ss_pred             CceeeEEEeecCCc
Q 012367          441 NKITGIQGRISKNY  454 (465)
Q Consensus       441 ~~It~~~f~p~gs~  454 (465)
                      ....++.++|+|.+
T Consensus       274 ~~p~~~~~~~dg~~  287 (330)
T PRK11028        274 TQPRGFNIDHSGKY  287 (330)
T ss_pred             ccCCceEECCCCCE
Confidence            23446677777644

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.17  E-value=1.8e-08  Score=93.63  Aligned_cols=175  Identities=15%  Similarity=0.214  Sum_probs=113.1

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeecCCCCcccc
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSN  270 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~  270 (465)
                      ..+.++-+|...+..       +..++ .-..+|.+|++.++  .++..- .+.|.||...+ .+..........+...+
T Consensus        72 y~pNkviIWDD~k~~-------~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC  140 (346)
T KOG2111|consen   72 YPPNKVIIWDDLKER-------CIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC  140 (346)
T ss_pred             CCCceEEEEecccCc-------EEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence            456677777643321       11122 45788999999877  555554 46899999873 33333332222111100


Q ss_pred             -----cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCe-EEEEeCCCCeEe
Q 012367          271 -----AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-VRMWQVGCNQCL  343 (465)
Q Consensus       271 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt-V~lWD~~~~~~l  343 (465)
                           .....+.+.....+...+..-..   ....+-..+.+|...|.|++.+-+| +++|+|..|| |||||..+|..+
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~---~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l  217 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLAS---TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL  217 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhh---cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence                 00111112111112221111100   0111346788999999999999776 8999999998 799999999999


Q ss_pred             EEec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367          344 NVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       344 ~~~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~  381 (465)
                      ..+.   ....|.|++|+| +..+|+++|..|+|+||.++.
T Consensus       218 ~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  218 QELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence            9995   456899999999 999999999999999998864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.17  E-value=5.3e-11  Score=115.02  Aligned_cols=177  Identities=15%  Similarity=0.206  Sum_probs=124.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .|..+.|-|..-+|++++..|.++--|+.+++                                             .+.
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---------------------------------------------lVa  245 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---------------------------------------------LVA  245 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhh---------------------------------------------hhH
Confidence            46666666666666666666766666666543                                             334


Q ss_pred             eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~  381 (465)
                      .+..-.+.+..|+-+|-+ .+-.|...|+|.+|......++..+ .|.++|.+|++.| +|+|++|.+.|..|+|||+++
T Consensus       246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecc
Confidence            444456777778888854 7778999999999999988876665 7999999999999 999999999999999999997


Q ss_pred             CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec-CCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      -..+...........+++|..|  +++.+....|.||.=. .+.-.. ...+-.  ...+..|.++.|+|-
T Consensus       325 ~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~-~~pYm~--H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  325 FYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHG-ETPYMN--HRCGGPVEDLRFCPY  390 (545)
T ss_pred             ccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCCC-Ccchhh--hccCcccccceeccH
Confidence            6533322225667888888655  5555666689999522 211111 111111  113458999999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.16  E-value=6.2e-09  Score=96.68  Aligned_cols=97  Identities=19%  Similarity=0.308  Sum_probs=80.7

Q ss_pred             eCCCeEEEEeCCCCeE---eEEecCCCceEEEEEccCCCCEEEEEeCCCc-EEEEeCCCCeEEe-cc--cCCCCeEEEEE
Q 012367          327 SMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-WA--DVRDVISAICY  399 (465)
Q Consensus       327 s~DgtV~lWD~~~~~~---l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~-I~iwd~~~~~~~~-~~--~~~~~V~sv~~  399 (465)
                      -.-|.|+|-|+...+.   .-...|...|.|++.+- +|..+||+|..|+ |||||..++..+. +.  .....|.+++|
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            3457888888876554   33446999999999999 9999999999997 8999999988775 22  24567999999


Q ss_pred             eeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          400 IPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       400 spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      +|++.+|+++|..|+++||.+....
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeecCC
Confidence            9999999999999999999998654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=3.2e-09  Score=100.94  Aligned_cols=201  Identities=15%  Similarity=0.232  Sum_probs=138.5

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----cCCC--CcccccCCC-eEEeccCCCCceeEe
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF----TDDG--GFGSNAKEG-KIKFGKKKSSHVPVV  289 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~----~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~  289 (465)
                      ....-+++|..++.. +| .|++|-.+|.+.+|....+.......    ...+  .+....... .+..+....     .
T Consensus       100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~-----~  172 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN-----I  172 (412)
T ss_pred             ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhc-----c
Confidence            344567788888875 33 78888999999999998544221100    0000  000111111 111111111     0


Q ss_pred             cCCceeeecCCcceeeecc-----------ccceEEEEecCC---CEEEEEeCCCeEEEEeCCCC-eEeEEec-CCCceE
Q 012367          290 IPDEVFQIEESPLQELHGH-----------KGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVT  353 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh-----------~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~-~~l~~~~-h~~~V~  353 (465)
                      ..-++|++... .+.+.+.           .-+++++.|-++   ..+++++.-+.|++||.+.+ +++..|. ...+++
T Consensus       173 n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is  251 (412)
T KOG3881|consen  173 NELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS  251 (412)
T ss_pred             cceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence            01122333222 2222221           235667778654   58999999999999999865 4777775 567899


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      ++...| +++++++|..-+.+..||++++++..  +.+..+.|+++..+|.++++++++.|..+||+|+.+.++.
T Consensus       252 ~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  252 STGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             eeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            999999 99999999999999999999998764  7889999999999999999999999999999999986553

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=2.6e-10  Score=119.97  Aligned_cols=195  Identities=19%  Similarity=0.293  Sum_probs=139.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-----cccCCCeEEecc-CCCCceeEecCCceee
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-----SNAKEGKIKFGK-KKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  296 (465)
                      +.|....+.-..+.++.+..+..+-+||..................     .......+.+.. .......++.+.    
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~----  163 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH----  163 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc----
Confidence            3344466666778899999999999999887544433322222110     011111111111 111122222222    


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE--EecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~--~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      ...++. .+.||.+.|-++.|+.++ +++++|.|.++|+|++.+.+.+.  .|+|+..|+.++|.| +  +++|++.|-+
T Consensus       164 ~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedct  239 (967)
T KOG0974|consen  164 EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCT  239 (967)
T ss_pred             ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceE
Confidence            123333 688999999999999775 99999999999999999987665  568999999999998 4  9999999999


Q ss_pred             EEEEeCCCCeEEecccCC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          374 VRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       374 I~iwd~~~~~~~~~~~~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      .++|+....++..+.+|. ..|..++..++...+++++.||.+++|++.+...
T Consensus       240 crvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  240 CRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             EEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence            999987776666666664 4699999999999999999999999999875443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=4.4e-09  Score=99.13  Aligned_cols=201  Identities=15%  Similarity=0.299  Sum_probs=134.3

Q ss_pred             CCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          222 KGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       222 ~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ...|+||+|-|.+ .-|+.|...| |.||............               .....                ...
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~---------------~~~s~----------------~~~  187 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI---------------RMMST----------------HHL  187 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc---------------ccccc----------------cch
Confidence            4569999999964 4788888866 8999876421110000               00000                001


Q ss_pred             cceeeeccccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw  377 (465)
                      .+....|| ..|++|.|++++ .+++++. |..|+|||+.++.++... ...+.++-+.|+| |+.+|..+.-|+..++|
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLW  265 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeee
Confidence            12233456 799999999986 6666665 678999999999887776 4566788999999 99999999999999999


Q ss_pred             eC-CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc------------eeeeEeeec-----Cccccc
Q 012367          378 GV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND------------LKLEKVDFH-----DRKKTS  439 (465)
Q Consensus       378 d~-~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~------------~~~~~~~~~-----~~~~~~  439 (465)
                      .. ++-....+.-..+.|...+|+|+|.+|+..... .-++|.+.-..            ..+...+++     ....-.
T Consensus       266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~  344 (445)
T KOG2139|consen  266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC  344 (445)
T ss_pred             hhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence            54 444455566667799999999999987765543 33456543111            111112222     112233


Q ss_pred             CCceeeEEEeecCCccce
Q 012367          440 GNKITGIQGRISKNYDNF  457 (465)
Q Consensus       440 ~~~It~~~f~p~gs~d~~  457 (465)
                      +..+..+++.|+|.|-..
T Consensus       345 cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  345 CGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             cCccceeeECCCCCEEEE
Confidence            577888999999988653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=6.8e-10  Score=110.00  Aligned_cols=169  Identities=16%  Similarity=0.272  Sum_probs=129.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      -..+++++|..++...+||+|+.||.|..||...............                            +     
T Consensus       173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----------------------------v-----  219 (703)
T KOG2321|consen  173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS----------------------------V-----  219 (703)
T ss_pred             cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc----------------------------c-----
Confidence            3458999999999999999999999999999876332211111000                            0     


Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                       .-+........|+++.|+.+| .++.|..+|.|.|||+++.+++..-.|..  +|..+.|.+.++.--+.......++|
T Consensus       220 -~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ki  298 (703)
T KOG2321|consen  220 -NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKI  298 (703)
T ss_pred             -CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhh
Confidence             000001122459999999987 78899999999999999999988887765  88999998854433333344678999


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ||-.+++..........++.+|+-|++.+++++-.++.+..|-+..
T Consensus       299 Wd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  299 WDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            9999999988877778899999999999999999999998887653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.08  E-value=3.6e-09  Score=99.12  Aligned_cols=167  Identities=20%  Similarity=0.322  Sum_probs=111.5

Q ss_pred             cccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEec-CCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV-TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      |..+...+....|.+.|..+-|+....++++.+.|..+ .|.. +.+.....+..................+........
T Consensus       101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM  179 (404)
T ss_pred             hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence            34444556677999999999999999999999999866 4543 333222222111111110000011111111111111


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eEeEEecCCCceEEEEEccCCCCE
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~--~~l~~~~h~~~V~~i~fsp~~~~~  364 (465)
                      .    .++...-.++.++.+|.+.|.+++|.+. +.|.+|+.|..|.+||+.-.  .....+.|.+.|..++..+ .-..
T Consensus       180 l----r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~  254 (404)
T KOG1409|consen  180 L----KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQ  254 (404)
T ss_pred             E----EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hhee
Confidence            1    1122234678889999999999999985 68999999999999999644  4444557999999999988 7888


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 012367          365 FISGSIDGKVRIWGVCE  381 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~  381 (465)
                      +++++.||.|-+|+...
T Consensus       255 l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  255 LISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeeccCCCeEEEEeccc
Confidence            99999999999999854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1.3e-08  Score=104.40  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=110.6

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|...+...+|+|||++||..+.+   ..|.+|++.++....                                  
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------------  237 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------------  237 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------------
Confidence            4556778889999999999998877644   358888887643210                                  


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEE-EEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                               +.   ...+.+....|+|++ .|+ +.+.++  .|.+||+.++.......+........|+| +++.++..
T Consensus       238 ---------l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~  304 (430)
T PRK00178        238 ---------IT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT  304 (430)
T ss_pred             ---------cc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence                     11   112233457899986 444 555555  68888999887655445555667789999 88877665


Q ss_pred             eC-CC--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-C--cEEEEEecCCcee
Q 012367          369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLK  426 (465)
Q Consensus       369 s~-Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G--~v~iwd~~~~~~~  426 (465)
                      +. ++  .|.++|+.+++...+..........+|+|||+.|+..+.+ |  .|.+||+.++...
T Consensus       305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~  368 (430)
T PRK00178        305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR  368 (430)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence            53 33  5777888877765443222334567899999999887753 3  4778888876543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1e-08  Score=104.96  Aligned_cols=156  Identities=15%  Similarity=0.135  Sum_probs=103.6

Q ss_pred             CCCcEEEEEECCCCCEEEEE-eCCCc--EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          221 HKGCIWTLKFSPDGRYLASG-GEDGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSg-s~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ..+.+..++|+|||+.|+.. +.+|.  |.+||+.++..                                         
T Consensus       241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-----------------------------------------  279 (429)
T PRK03629        241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----------------------------------------  279 (429)
T ss_pred             CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-----------------------------------------
Confidence            34445578999999988754 44554  77788765321                                         


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCC-Ce--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC--
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-KT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--  371 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D-gt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D--  371 (465)
                           ..+..+...+....|+|++ .|+.++.+ +.  |.++|+.++.......+...+.+..|+| ++++++..+.+  
T Consensus       280 -----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g  353 (429)
T PRK03629        280 -----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGG  353 (429)
T ss_pred             -----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCC
Confidence                 1122233456778999986 56655543 44  5555777665544434455667889999 99988876654  


Q ss_pred             -CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCc---EEEEEecCCc
Q 012367          372 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT---CHFYKASGND  424 (465)
Q Consensus       372 -g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~---v~iwd~~~~~  424 (465)
                       ..|.+||+.++....+... .......|+|||+.|+.++.+|.   +.++++.+..
T Consensus       354 ~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        354 QQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence             3588999988876654432 23456889999999999998764   5666765543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=3.9e-09  Score=108.09  Aligned_cols=119  Identities=18%  Similarity=0.261  Sum_probs=87.9

Q ss_pred             eeeccccceEEEEecCCC-EEEEEeCC---CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEE-
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW-  377 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~D---gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw-  377 (465)
                      .+..|...+.+.+|+|++ .|+.++.+   ..|++||+.+++.............++|+| +++.|+.++ .+|.+.|| 
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEE
Confidence            345677789999999986 67766543   479999998876433322223345789999 998887764 67765554 


Q ss_pred             -eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCC
Q 012367          378 -GVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN  423 (465)
Q Consensus       378 -d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~  423 (465)
                       |+.++....+..+...+.+.+|+|||+.|+.++ .+|...||++...
T Consensus       277 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        277 MGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             EECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence             777777777777777889999999999877665 5788899987643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1.7e-08  Score=100.75  Aligned_cols=189  Identities=15%  Similarity=0.231  Sum_probs=128.3

Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCe-EE---------------eccCCCCceeEecCCc-
Q 012367          231 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK-IK---------------FGKKKSSHVPVVIPDE-  293 (465)
Q Consensus       231 spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~-  293 (465)
                      .|.+.|+|....||.++||+....+....+.........+..... +.               .............+.. 
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            355679999999999999999876554333222111111000000 00               0000111111111221 


Q ss_pred             e--eeecCCcce-ee--eccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEE
Q 012367          294 V--FQIEESPLQ-EL--HGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       294 ~--~~~~~~~~~-~~--~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~  366 (465)
                      +  +......+. .+  .+|.+.|.++.++.+ +.|.|++.|+.+..|+....+.++.+. ....+.+++.+| |+..++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~  160 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILL  160 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEE
Confidence            1  112222222 22  369999999999875 799999999999999999999988885 566889999999 899999


Q ss_pred             EEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeC-----CCEEEEEEc-CCcEEEEEecC
Q 012367          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD-----GKGFIVGSI-TGTCHFYKASG  422 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spd-----g~~l~sgs~-dG~v~iwd~~~  422 (465)
                      +++  +.|++||+.+++++. +.+|.+.|++++|..+     |.+++++.. +.-+.+|-+..
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            887  789999999998875 8899999999999987     777766543 55567787664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.8e-08  Score=103.65  Aligned_cols=163  Identities=17%  Similarity=0.154  Sum_probs=106.3

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeC-CC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..+...+.+..|||||+.|+..+. ++  .|.+||+.++...                                   
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-----------------------------------  255 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-----------------------------------  255 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence            345566778999999999998887654 33  4777777654221                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                              .+..+.+   .....+|+|++ .| ++.+.++.  |.+||+.+++......+.......+|+| ++++++..
T Consensus       256 --------~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~  323 (448)
T PRK04792        256 --------KVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFT  323 (448)
T ss_pred             --------EecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence                    1111112   22357899986 34 45566664  7888998877655445555677889999 88877665


Q ss_pred             eC-CC--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCc--EEEEEecCCce
Q 012367          369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDL  425 (465)
Q Consensus       369 s~-Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~--v~iwd~~~~~~  425 (465)
                      +. ++  .|.++|+.+++...+..........+|+|||+.|+..+. ++.  |.++|+.++..
T Consensus       324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            53 33  467778877776554323333456799999999877665 443  44567766654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.00  E-value=1.8e-09  Score=113.78  Aligned_cols=118  Identities=24%  Similarity=0.452  Sum_probs=100.6

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+.||.+.|..+.|+.||+++||.|+|.++|+|++++....                                       
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~---------------------------------------  210 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL---------------------------------------  210 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------------------------------------
Confidence            57799999999999999999999999999999999975321                                       


Q ss_pred             ecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCC-CceEEEEEccCCCCEEEEEeCCCcE
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHH-NYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~-~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                           .....||+..|..+++.|. .++|++.|.+.++|+.. +..+.++ .|. ..++.++..+ +....+|++.|+.+
T Consensus       211 -----~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  211 -----GCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTL  282 (967)
T ss_pred             -----CcccccccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcch
Confidence                 1234589999999999998 99999999999999766 3444466 354 4799999998 88999999999999


Q ss_pred             EEEeCCC
Q 012367          375 RIWGVCE  381 (465)
Q Consensus       375 ~iwd~~~  381 (465)
                      ++||+.+
T Consensus       283 k~~~l~~  289 (967)
T KOG0974|consen  283 KLWDLNG  289 (967)
T ss_pred             hhhhhhc
Confidence            9999854

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=7.5e-09  Score=96.97  Aligned_cols=211  Identities=19%  Similarity=0.297  Sum_probs=136.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee-eeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ..-|.+|.|...|.+||||..+|.|.++.-...... ....+....                        .    ..+-.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqs------------------------h----epEFD   76 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQS------------------------H----EPEFD   76 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeec------------------------c----Ccccc
Confidence            455899999999999999999999999975542110 000000000                        0    00000


Q ss_pred             cceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCC-----------------------------------eE
Q 012367          301 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN-----------------------------------QC  342 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~-----------------------------------~~  342 (465)
                      .+..+ .-...|..+.|.+++   .++....|++|++|-+...                                   .|
T Consensus        77 YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p  155 (433)
T KOG1354|consen   77 YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP  155 (433)
T ss_pred             hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence            11111 123578889998753   6778889999999987421                                   12


Q ss_pred             eEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeEEeccc-----CCCCeEEEEEeeC-CCEEEEEE
Q 012367          343 LNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWAD-----VRDVISAICYIPD-GKGFIVGS  410 (465)
Q Consensus       343 l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~----~~~~~~~~-----~~~~V~sv~~spd-g~~l~sgs  410 (465)
                      .+.+.  |.--|++|.++. |...++++. |=.|.+|++.-    -.++....     ....|++..|+|. .+.++-.+
T Consensus       156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  156 RRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            23332  666799999999 888888875 78899999852    23444443     3466999999995 46778888


Q ss_pred             cCCcEEEEEecCCceeee-------EeeecCc--ccccCCceeeEEEeecCCc------cceeeeecC
Q 012367          411 ITGTCHFYKASGNDLKLE-------KVDFHDR--KKTSGNKITGIQGRISKNY------DNFRRFQTP  463 (465)
Q Consensus       411 ~dG~v~iwd~~~~~~~~~-------~~~~~~~--~~~~~~~It~~~f~p~gs~------d~~~~~~~p  463 (465)
                      ..|+|++-|++...+...       ..+...+  .......|..++|+++|.|      .++.+|+.+
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~n  301 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLN  301 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecc
Confidence            899999999995443221       1111111  1112477899999999876      457788763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.97  E-value=2.1e-09  Score=100.10  Aligned_cols=137  Identities=17%  Similarity=0.320  Sum_probs=106.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee
Q 012367          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (465)
Q Consensus       227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (465)
                      -.+|||+|+|+|+++.- .+.|=|..+.+..                                              .+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~----------------------------------------------qlf   45 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH----------------------------------------------QLF   45 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH----------------------------------------------HHH
Confidence            46899999999999876 5667776653221                                              111


Q ss_pred             ccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCC-CEEEEEeCCCcEEEEeCCCC
Q 012367          307 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       307 gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~-~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      .--..|.-|.|..+.  .|...+.|+.|.+|++....--..+. ....+..++|+| +| .++.+...|-.|.+|.+.+.
T Consensus        46 ~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   46 LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccc
Confidence            123567778888764  55667889999999998877666664 667899999999 77 56667778999999999999


Q ss_pred             eEEecccCCCCeEEEEEeeCCCEEEEEEc
Q 012367          383 RVVDWADVRDVISAICYIPDGKGFIVGSI  411 (465)
Q Consensus       383 ~~~~~~~~~~~V~sv~~spdg~~l~sgs~  411 (465)
                      ......-.+..+..++|+|||++.+..+.
T Consensus       125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  125 KGYLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             eeEEecccccCceeEEECCCCceeeeeec
Confidence            88877666677899999999999888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=3.6e-08  Score=101.13  Aligned_cols=158  Identities=17%  Similarity=0.234  Sum_probs=105.0

Q ss_pred             hccCCCcEEEEEECCCCCEEE-EEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          218 IQAHKGCIWTLKFSPDGRYLA-SGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +..+.+...+++|+|+|+.|+ +.+.+|  .|.+||+.++..                                      
T Consensus       243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~--------------------------------------  284 (433)
T PRK04922        243 VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL--------------------------------------  284 (433)
T ss_pred             eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe--------------------------------------
Confidence            344555566889999999765 556666  488888765321                                      


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                              ..+..|.......+|+|++ .|+.++ .++.  |.++|+.+++......+......++|+| ++++++..+.
T Consensus       285 --------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~  355 (433)
T PRK04922        285 --------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHG  355 (433)
T ss_pred             --------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEC
Confidence                    1222333444567999986 566555 3444  7777877776544433445566789999 9999887654


Q ss_pred             CC---cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCC
Q 012367          371 DG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGN  423 (465)
Q Consensus       371 Dg---~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~  423 (465)
                      ++   .|.+||+.++....+.. ........|+|||+.++..+.+   +.+.++++.+.
T Consensus       356 ~~~~~~I~v~d~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCCceeEEEEECCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            43   59999998887665443 2345678999999988877763   35666777543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=8.2e-08  Score=98.61  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=102.4

Q ss_pred             eeeeccccceEEEEecCCC-EEEEEeC---CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-EEeCCCc--EE
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--VR  375 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~---DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-sgs~Dg~--I~  375 (465)
                      +.+..|...+...+|+|++ .|+..+.   +..|.+||+.+++......+...+....|+| +++.|+ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence            4455677889999999986 5665543   4689999999887655545667788899999 887664 5555555  77


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CC--cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +||+.++....+..+.......+|+|||+.|+..+. +|  .|++||+.++....  +....      ..+....|+|+|
T Consensus       274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~--lt~~~------~~~~~~~~SpdG  345 (435)
T PRK05137        274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR--ISFGG------GRYSTPVWSPRG  345 (435)
T ss_pred             EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE--eecCC------CcccCeEECCCC
Confidence            789999888777777777888999999999887774 34  57777877665432  22111      234456677766


Q ss_pred             Cc
Q 012367          453 NY  454 (465)
Q Consensus       453 s~  454 (465)
                      .+
T Consensus       346 ~~  347 (435)
T PRK05137        346 DL  347 (435)
T ss_pred             CE
Confidence            44

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=3.4e-09  Score=116.75  Aligned_cols=190  Identities=17%  Similarity=0.276  Sum_probs=137.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--ceee
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQ  296 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  296 (465)
                      +.|-..|.+|.=+|...+.+||+.||.|++|....++.+.........     ......+...++....+...+  ..|.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s-----~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS-----RVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcc-----hhhhhhhcccCCceeeeccCCceeecc
Confidence            345667899999999999999999999999999887766655443321     111122222222222222222  3455


Q ss_pred             ecCCcceeeeccccceEEEEecCCCEEEEE---eCCCeEEEEeCCCC---eEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSNYLLSC---SMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~---s~DgtV~lWD~~~~---~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      +..++....+.|.....+..|-. ..++++   +.++.+.+||.--.   .++. ..|.+.++++++.| ....|++||.
T Consensus      2280 ~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred             cCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-cceEEEecCC
Confidence            56788888899999999988876 334544   44689999997533   2333 46999999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +|.|++||++..++......        ++ ...++++|+..|.++||++..-.+
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccch
Confidence            99999999998877653222        44 556899999999999999987643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=8.3e-08  Score=98.25  Aligned_cols=156  Identities=21%  Similarity=0.251  Sum_probs=101.6

Q ss_pred             cCCCcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      ...+.+.+.+|+|||+.|+ +.+.+|...||.+....                                           
T Consensus       237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-------------------------------------------  273 (427)
T PRK02889        237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG-------------------------------------------  273 (427)
T ss_pred             cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC-------------------------------------------
Confidence            3455677899999999776 56788888888754210                                           


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEe--CCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC--
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--  372 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD--~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg--  372 (465)
                       .....+..|.+.+....|+|++ .|+..+ .++...||.  +.++.......+.......+|+| ++++++..+.++  
T Consensus       274 -~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~  351 (427)
T PRK02889        274 -SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGA  351 (427)
T ss_pred             -CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCc
Confidence             1122233344445567899986 555444 345666665  45554433333334455688999 999998777654  


Q ss_pred             -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC-c--EEEEEec
Q 012367          373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-T--CHFYKAS  421 (465)
Q Consensus       373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG-~--v~iwd~~  421 (465)
                       .|.+||+.++....+... ......+|+|||+.|+.++.++ .  +.+.++.
T Consensus       352 ~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        352 FKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             EEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence             599999998876655433 3457789999999988887644 3  4444443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.91  E-value=1.9e-08  Score=92.57  Aligned_cols=158  Identities=16%  Similarity=0.171  Sum_probs=121.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      -.++.|++.+.-++++-.+|.+.+-+.....                                           -+.++.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------------------------le~vq~  160 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-------------------------------------------LEKVQT  160 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee-------------------------------------------eeeccc
Confidence            4578888888888888888888743332211                                           123557


Q ss_pred             eeccccceEEEEecC--CCEEEEEeCCCeEEEEeCC-CCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          305 LHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVG-CNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~-~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      +++|.-+.+-.+|+.  .+.+.+|+.|+.+.-||++ .++++..-  .|...|.+|.-+|..+.+++||+.|-.|++||.
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt  240 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT  240 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence            788999999999984  2689999999999999999 44444442  388899999999988999999999999999999


Q ss_pred             C-CCeEEecccCCCCeEEEEEeeCC--CEEEEEEcCCcEEEEEecCCcee
Q 012367          380 C-EKRVVDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       380 ~-~~~~~~~~~~~~~V~sv~~spdg--~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      + .++++.-....+.|..++++|.-  +.|+++-.+| .+|-+.+.+...
T Consensus       241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e  289 (339)
T KOG0280|consen  241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE  289 (339)
T ss_pred             hcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence            8 47777766677999999999943  3445554555 577787766554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=3.5e-07  Score=93.46  Aligned_cols=114  Identities=11%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             ceEEEEecCCC-EEEEEe-CCCeEEEE--eCCC-CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCC
Q 012367          311 DVLDLAWSNSN-YLLSCS-MDKTVRMW--QVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE  381 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s-~DgtV~lW--D~~~-~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~  381 (465)
                      .....+|+|++ .|+..+ .++...||  ++.. +.....+ .+...+....|+| ++++|+..+.+   ..|.+||+.+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence            34567999986 455444 56655555  4432 2223333 3445778899999 99988776543   3699999999


Q ss_pred             CeEEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCce
Q 012367          382 KRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDL  425 (465)
Q Consensus       382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~  425 (465)
                      ++...+......+....|+|||+.|+..+.   .+.|.++|+.+++.
T Consensus       361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            887766555556788999999998876543   34677788877654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=9.9e-08  Score=89.61  Aligned_cols=204  Identities=15%  Similarity=0.304  Sum_probs=130.3

Q ss_pred             CCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          222 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       222 ~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      ...|+.+.|.++++  .++..+.|.+|++|.+................ .......+.+        .+..+. -..+..
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~-~~~~~~~lr~--------p~~~~~-~~~vea  153 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG-PPGTITSLRL--------PVEGRH-DLEVEA  153 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccC-CCCccceeec--------eeeccc-cceeee
Confidence            45689999999766  67777889999999987643322110000000 0000001110        000000 011122


Q ss_pred             Ccceee-eccccceEEEEecCCCEEEEEeCCCeEEEEeCCC-CeEeEEe--c------CCCceEEEEEccCCCCEEEEEe
Q 012367          300 SPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVF--D------HHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       300 ~~~~~~-~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~-~~~l~~~--~------h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                      .|.+.+ .+|+--|.+|.++.++..+-++.|-.|.||++.- .++....  +      -...|++..|+|..-+.|+-.+
T Consensus       154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  154 SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            334433 4699999999999887555566789999999863 2222222  1      2346899999998889999999


Q ss_pred             CCCcEEEEeCCCCeEEe-----------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeee
Q 012367          370 IDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-----------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~  432 (465)
                      ..|+||+-|++...+..                 +...-..|..+.|+++|+++++-+.- +|++||+.-...+......
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEee
Confidence            99999999998532211                 12233568899999999999986554 8999999877777776666


Q ss_pred             cCcc
Q 012367          433 HDRK  436 (465)
Q Consensus       433 ~~~~  436 (465)
                      |...
T Consensus       313 h~~l  316 (433)
T KOG1354|consen  313 HEYL  316 (433)
T ss_pred             hHhH
Confidence            6543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=8.6e-08  Score=91.81  Aligned_cols=160  Identities=14%  Similarity=0.160  Sum_probs=116.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .++.+.+++.+++||.+..+....++++.......                                         +.+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~-----------------------------------------kl~~  102 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGA-----------------------------------------KLLD  102 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcc-----------------------------------------eeee
Confidence            45667788899999999888888888876532100                                         0000


Q ss_pred             ee--eccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          304 EL--HGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       304 ~~--~gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      ..  .--...+.-+....... ...++....+.+|....+.+...++|-.-++.|+|+| |+++++++..|.+|||-...
T Consensus       103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence            00  01112222233222222 2344555677778777788888889999999999999 99999999999999999888


Q ss_pred             CCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          381 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       381 ~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      ..-.+.  ..+|+.-|..++..++. .|++|+.|+++++||+.+++..
T Consensus       182 a~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             cccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence            776665  56799999999998764 5899999999999999988764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.77  E-value=4.9e-07  Score=92.24  Aligned_cols=157  Identities=17%  Similarity=0.239  Sum_probs=103.8

Q ss_pred             hccCCCcEEEEEECCCCCEEE-EEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          218 IQAHKGCIWTLKFSPDGRYLA-SGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +..+.+.+.+++|+|+|+.|+ +.+.++  .|.+|++.+...                                      
T Consensus       229 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~--------------------------------------  270 (417)
T TIGR02800       229 VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL--------------------------------------  270 (417)
T ss_pred             eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE--------------------------------------
Confidence            344666778899999999765 455555  477777765321                                      


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeC-CC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                              ..+..|........|+|++ .|+.++. ++  .|.++|+.+++......+...+..+.|+| ++++++.++.
T Consensus       271 --------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~  341 (417)
T TIGR02800       271 --------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHR  341 (417)
T ss_pred             --------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEc
Confidence                    1111232333456788875 5655443 33  58888988777655445667788899999 8999988887


Q ss_pred             CC---cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecC
Q 012367          371 DG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASG  422 (465)
Q Consensus       371 Dg---~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~  422 (465)
                      ++   .|.+||+.++....+... ......+|+|||+.|+..+.++   .+.+.+..+
T Consensus       342 ~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       342 EGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             cCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            76   789999988765444332 2345678999999988887754   344444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=8.9e-07  Score=88.20  Aligned_cols=115  Identities=19%  Similarity=0.400  Sum_probs=90.5

Q ss_pred             cccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCC
Q 012367          308 HKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE  381 (465)
Q Consensus       308 h~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~  381 (465)
                      ..++|.++.|++++   -++.|-+--.|.|+|++ +.++..|. .++=+++-|+| .|++++.+|.+   |.|-|||+.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECC-CCCEEEEeecCCCCCceEEEeccc
Confidence            36899999999986   45677888999999998 44555553 34557899999 99999988875   7899999999


Q ss_pred             CeEEecccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCcee
Q 012367          382 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLK  426 (465)
Q Consensus       382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~  426 (465)
                      .+.+......+ -+-+.|+|||.+|+|++.      |+.++||+..+..+.
T Consensus       346 ~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  346 RKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             hhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            77665443333 355789999999999885      788999999877654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.77  E-value=3.2e-07  Score=98.58  Aligned_cols=235  Identities=12%  Similarity=0.122  Sum_probs=143.4

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      +.+.++.+++|+-.+-..+........++.--.+.+.++.+.+.|..+|.|+.||.|++.++............. ....
T Consensus      1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~-ri~n 1144 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV-RIPN 1144 (1431)
T ss_pred             EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee-eccc
Confidence            345678889998877666655555556666568889999999999999999999999999987631111100000 0000


Q ss_pred             ccCCCe-EE---ecc-CCC-CceeEecCCce--eeecCC-cc--eeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeC
Q 012367          270 NAKEGK-IK---FGK-KKS-SHVPVVIPDEV--FQIEES-PL--QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQV  337 (465)
Q Consensus       270 ~~~~~~-~~---~~~-~~~-~~~~~~~~~~~--~~~~~~-~~--~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~  337 (465)
                      ....+. +.   +.. ..+ ..........+  |++... ..  .......+.|++++.+|. +++++|+..|.+.+||+
T Consensus      1145 ~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1145 LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred             ccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEe
Confidence            000000 00   000 011 11111111111  111100 01  112234588999999996 59999999999999999


Q ss_pred             CCCeEeEEec--CCCceEEEEEccCCC--CEEEEEeC--CCcEEEEeCCCCeEEe--ccc------------------CC
Q 012367          338 GCNQCLNVFD--HHNYVTCVQFNPIDD--NYFISGSI--DGKVRIWGVCEKRVVD--WAD------------------VR  391 (465)
Q Consensus       338 ~~~~~l~~~~--h~~~V~~i~fsp~~~--~~l~sgs~--Dg~I~iwd~~~~~~~~--~~~------------------~~  391 (465)
                      +-+.++....  +..+++.+..+|..+  .+.++++.  .+.|-+|++.+|....  +..                  +.
T Consensus      1225 RF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~ 1304 (1431)
T KOG1240|consen 1225 RFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDS 1304 (1431)
T ss_pred             ecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCc
Confidence            9988888775  445788888777555  56666554  6789999998864322  222                  11


Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      -.....++.--+..+++|+.|+.|+.||......
T Consensus      1305 ~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1305 LAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            1112223333445889999999999999875544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=1.1e-08  Score=66.95  Aligned_cols=37  Identities=38%  Similarity=0.869  Sum_probs=34.8

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  250 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd  250 (465)
                      +.+++.+|.++|++|+|+|++.+||||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4577899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=9.9e-08  Score=91.00  Aligned_cols=133  Identities=13%  Similarity=0.214  Sum_probs=112.4

Q ss_pred             EEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          225 IWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       225 I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      ++.+.|-+.  ...|||++.-+.||+||...+                                            ..|+
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------------------------------------------RRPV  240 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------------------------------------------RRPV  240 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCccc--------------------------------------------Ccce
Confidence            567888887  779999999999999999863                                            2456


Q ss_pred             eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-e-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      ..+.--..+|+++...|++ ++++|..-+.+..+|++.+..+.. + +..+.|.+|..+| ...+++++|.|+.|||+|+
T Consensus       241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeec
Confidence            6666667889999988874 889999999999999999998888 4 5788999999999 8899999999999999999


Q ss_pred             CCCeEEecccCCCCeEEEEEeeC
Q 012367          380 CEKRVVDWADVRDVISAICYIPD  402 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spd  402 (465)
                      .+.+++........++.+-+.++
T Consensus       320 ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  320 KTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             ccchhhhhhhhhccccEEEecCC
Confidence            99877766666677777777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.75  E-value=1.1e-07  Score=89.41  Aligned_cols=209  Identities=17%  Similarity=0.289  Sum_probs=129.6

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCc-eeeeee--ecCCCC--cccccCCCeEEeccCCCCceeE
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-AASCKS--FTDDGG--FGSNAKEGKIKFGKKKSSHVPV  288 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~-~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  288 (465)
                      ..+.+.||.+.|+....-|-..-+++++.|.++|||--... +.-...  ..+...  .........+..+.........
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            34678899999999999898888999999999999954331 111000  001000  0111111111121111111111


Q ss_pred             ecCCceeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCC-----------------------------
Q 012367          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVG-----------------------------  338 (465)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~-----------------------------  338 (465)
                      ... ..|+ .....+....|...|..+-|+- ..++++++.|+.+.---.+                             
T Consensus        96 s~s-edfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   96 ALS-EDFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             Ehh-hhhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            110 0111 0122344455666666666652 3455555555433211111                             


Q ss_pred             ------------CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeEEecccCCCCeEEEEEeeCC
Q 012367          339 ------------CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDG  403 (465)
Q Consensus       339 ------------~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~V~sv~~spdg  403 (465)
                                  .-..+..+ +|.+.+++++|.| ....+.+|..|..|.+||+-.  +......+|.+.|.++++.+--
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t  252 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT  252 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence                        11122333 4888999999999 889999999999999999964  4555688999999999999999


Q ss_pred             CEEEEEEcCCcEEEEEecCCce
Q 012367          404 KGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       404 ~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.+++++.||.|-+|++.....
T Consensus       253 ~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             eeeeeccCCCeEEEEeccceee
Confidence            9999999999999999875443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=2.8e-08  Score=98.20  Aligned_cols=170  Identities=14%  Similarity=0.220  Sum_probs=125.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      +.+.||+..|+.++--.+.+-+++++.|++|++|.+....-..                        .            
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------~------------  772 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------G------------  772 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------c------------
Confidence            5678999999999887788899999999999999987521000                        0            


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEcc-CCCCEEEEE-e
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP-IDDNYFISG-S  369 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp-~~~~~l~sg-s  369 (465)
                        ...+..++..|+.+|.++-|-.+. +++  +.|+.|.+||.--++.+....   .++.+..+..-| .+..+++.| +
T Consensus       773 --tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs  848 (1034)
T KOG4190|consen  773 --TSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS  848 (1034)
T ss_pred             --cceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc
Confidence              012345677899999999988764 554  458999999998777766431   222233332223 145556655 7


Q ss_pred             CCCcEEEEeCCCCeEEe------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          370 IDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ...+|+++|.+.+..+.      ..+.+..+.+++..|.|+.+++|-.+|++-+.|.++++.
T Consensus       849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence            78999999999876543      233456789999999999999999999999999998874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=2.1e-06  Score=96.74  Aligned_cols=175  Identities=12%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          226 WTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       226 ~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      +.|+|+| ++.++++.+.++.|++||..++.....  ...+...                           .......  
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~--~G~G~~~---------------------------~~~g~~~--  734 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF--SGDGYER---------------------------NLNGSSG--  734 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE--ecCCccc---------------------------cCCCCcc--
Confidence            5789999 566777778889999999876533211  0000000                           0000000  


Q ss_pred             eeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEE-------------ec-C--------CCceEEEEEccC
Q 012367          305 LHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNV-------------FD-H--------HNYVTCVQFNPI  360 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~-------------~~-h--------~~~V~~i~fsp~  360 (465)
                      ....-.....|+++|++  ++++.+.++.|++||+.++.....             ++ +        -.....++++| 
T Consensus       735 ~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-  813 (1057)
T PLN02919        735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-  813 (1057)
T ss_pred             ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-
Confidence            00112345679999875  566777789999999987653211             11 0        01246889999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEecccC--------------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-
Q 012367          361 DDNYFISGSIDGKVRIWGVCEKRVVDWADV--------------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-  425 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--------------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~-  425 (465)
                      +++++++-+.++.|++||..++.+....+.              -.....++++++|+.+++-+.+++|++||+.+++. 
T Consensus       814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence            899999999999999999998877654332              13578899999999888888999999999998765 


Q ss_pred             eeeEeee
Q 012367          426 KLEKVDF  432 (465)
Q Consensus       426 ~~~~~~~  432 (465)
                      +...+.+
T Consensus       894 ~~~~l~~  900 (1057)
T PLN02919        894 EILTLEL  900 (1057)
T ss_pred             eeEeecc
Confidence            3334443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=2.1e-06  Score=87.85  Aligned_cols=135  Identities=16%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             ceEEEEecCCC-EEEEEe-C----CCeEEEEeCCCC---eEeEEecC-CCceEEEEEccCCCCEEEEEe-CCCcEEEE--
Q 012367          311 DVLDLAWSNSN-YLLSCS-M----DKTVRMWQVGCN---QCLNVFDH-HNYVTCVQFNPIDDNYFISGS-IDGKVRIW--  377 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s-~----DgtV~lWD~~~~---~~l~~~~h-~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw--  377 (465)
                      .....+|+|+| .|+..+ .    |..+.+|++..+   ........ .......+|+| +++.|+..+ .+|...||  
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence            34457899987 555433 2    334555777653   33333332 23456789999 998777665 46655555  


Q ss_pred             eCC--CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          378 GVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       378 d~~--~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      ++.  ++....+......+...+|+|||+.|+..+.+   ..|.+||+.+++.....-  .      ...+.+..|+|+|
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~------~~~~~~p~wSpDG  382 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--S------PENKESPSWAIDS  382 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--C------CCCccceEECCCC
Confidence            443  23334444455567889999999998876653   368999998876542211  1      1134456677766


Q ss_pred             Cc
Q 012367          453 NY  454 (465)
Q Consensus       453 s~  454 (465)
                      .+
T Consensus       383 ~~  384 (428)
T PRK01029        383 LH  384 (428)
T ss_pred             CE
Confidence            43

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.9e-07  Score=95.02  Aligned_cols=173  Identities=17%  Similarity=0.288  Sum_probs=125.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .......|+.|+....|+|.||.||.++|-.+.+.........       .....                       .-
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa~s-----------------------nL   61 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAAAS-----------------------NL   61 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------ccccc-----------------------cc
Confidence            3456789999999999999999999999998876322110000       00000                       00


Q ss_pred             CcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      ..-+++.||++.|.-+.|+.. +.|-|+..+|.|.+|-+-.++-....   ...+.|.+++|+. +|..+...-.||.|.
T Consensus        62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVI  140 (1189)
T ss_pred             chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEE
Confidence            123578899999999999965 57888889999999998776533332   3556789999998 888888888888887


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +=.+...++....-.......+.|++|.+.++.+-.+|.+++||..++
T Consensus       141 VGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  141 VGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             EEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc
Confidence            776666555432112223457899999999999999999999998754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=1.9e-07  Score=84.65  Aligned_cols=195  Identities=13%  Similarity=0.113  Sum_probs=114.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC----CcccccCCCeEEeccCCCCceeEecCCce
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG----GFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .-|+++-.+-+.+-.++-+++++.||.+.+.+.+.............    ..........+..    .....+-..+..
T Consensus        86 a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s----~~~g~~n~~d~~  161 (319)
T KOG4714|consen   86 AKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILS----GGCGNWNAQDNF  161 (319)
T ss_pred             eccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEec----CCcceEeeccce
Confidence            34555554555555677899999999999999876211110000000    0000000011110    111111111222


Q ss_pred             eeecCCcceeeec---cccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEE
Q 012367          295 FQIEESPLQELHG---HKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       295 ~~~~~~~~~~~~g---h~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~s  367 (465)
                      +..+..|..++..   -...|.+++-+|.  +.+++|+.||.|.+||.+.......+  .|+..++-+.|+|.++..|++
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft  241 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT  241 (319)
T ss_pred             eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence            2223334433321   1234888888874  58889999999999999987543333  499999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEe---------cc----------------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          368 GSIDGKVRIWGVCEKRVVD---------WA----------------DVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~---------~~----------------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      ++.||.+-.||..+.-+..         |.                .....|++  |.--|..|++|+.-+-|++++
T Consensus       242 ~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  242 CSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            9999999999987532210         00                00111222  333467888888888888764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.63  E-value=2.5e-07  Score=85.85  Aligned_cols=200  Identities=21%  Similarity=0.364  Sum_probs=132.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ....|+++.|...|.|||||...|.|.++.-.... .|.                                       .+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ce---------------------------------------yk   64 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCE---------------------------------------YK   64 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccc---------------------------------------hh
Confidence            34569999999999999999999999999765422 111                                       01


Q ss_pred             cceeeecc------------ccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCe------------------------
Q 012367          301 PLQELHGH------------KGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQ------------------------  341 (465)
Q Consensus       301 ~~~~~~gh------------~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~------------------------  341 (465)
                      -+.++++|            ...|..|.|..+   +.++..+.|++|++|.+....                        
T Consensus        65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~  144 (460)
T COG5170          65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST  144 (460)
T ss_pred             hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence            11222222            356788888753   267777899999999864320                        


Q ss_pred             ------------------EeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--C--eEEecccC-----CC
Q 012367          342 ------------------CLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--K--RVVDWADV-----RD  392 (465)
Q Consensus       342 ------------------~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~--~~~~~~~~-----~~  392 (465)
                                        +.+.+  .|.--+.++.|+. +...++++. |-.|.+|++.-  +  .++....|     ..
T Consensus       145 ~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLte  222 (460)
T COG5170         145 KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTE  222 (460)
T ss_pred             HHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHH
Confidence                              00111  1555688899998 777777764 78899998853  2  34455444     35


Q ss_pred             CeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCcee-----ee--Eeeec--CcccccCCceeeEEEeecCCc------cc
Q 012367          393 VISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK-----LE--KVDFH--DRKKTSGNKITGIQGRISKNY------DN  456 (465)
Q Consensus       393 ~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~-----~~--~~~~~--~~~~~~~~~It~~~f~p~gs~------d~  456 (465)
                      .|++..|+|.. ..+.-.+..|.|++-|++...+.     +.  +++..  .........|..++|+++|.|      .+
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdylt  302 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLT  302 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccce
Confidence            68999999954 56677788999999999843332     22  22111  111223478999999999854      55


Q ss_pred             eeeeec
Q 012367          457 FRRFQT  462 (465)
Q Consensus       457 ~~~~~~  462 (465)
                      +.+|++
T Consensus       303 vkiwDv  308 (460)
T COG5170         303 VKIWDV  308 (460)
T ss_pred             EEEEec
Confidence            777775

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.62  E-value=6.9e-06  Score=82.09  Aligned_cols=145  Identities=16%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeC
Q 012367          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV  379 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~  379 (465)
                      +..+......-..+.++|++ +++.++.|+.|.++|+.+++.++.+........++++| ++++++++. ..+.+.|+|.
T Consensus        29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEEET
T ss_pred             EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEecc
Confidence            33444333333456788875 78888999999999999999999998888889999999 999988776 5899999999


Q ss_pred             CCCeEEeccc--------CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEe
Q 012367          380 CEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       380 ~~~~~~~~~~--------~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~  449 (465)
                      .+.+++....        ....+.++..+|....+++.-. .|.|-+.|....+.... .+.       ......+..|.
T Consensus       108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-------~g~~~~D~~~d  180 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-------VGRFPHDGGFD  180 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------TTEEEEEE-
T ss_pred             ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-------ccccccccccC
Confidence            9988775322        2346788888898886666555 47777777665432221 221       23455667777


Q ss_pred             ecCCc
Q 012367          450 ISKNY  454 (465)
Q Consensus       450 p~gs~  454 (465)
                      |++.|
T Consensus       181 pdgry  185 (369)
T PF02239_consen  181 PDGRY  185 (369)
T ss_dssp             TTSSE
T ss_pred             cccce
Confidence            77765

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.61  E-value=1.8e-06  Score=79.83  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=91.3

Q ss_pred             eEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE--Ee-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC-CCeEEe
Q 012367          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD  386 (465)
Q Consensus       312 V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~--~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~-~~~~~~  386 (465)
                      -.++.|++.+ .++++-.+|.+.+-+.......+  .. .|.-..+-..|+..+.+++.+||.|+.+..||++ .+..+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            4567788754 68888888888866655554444  33 4888999999998889999999999999999999 333332


Q ss_pred             --cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          387 --WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       387 --~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                        ..-|...|.++.-+| .+.++++|+.|-+|++||++.-..++.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence              456888999998886 678999999999999999996555543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.61  E-value=1.2e-06  Score=81.91  Aligned_cols=194  Identities=12%  Similarity=0.165  Sum_probs=122.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc-------------cCCCeEEeccCCCCceeEe
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN-------------AKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  289 (465)
                      -.|..++|+|.+++||.|+.|+.+||-+--+.+....+.+........             .....+.+..........-
T Consensus       211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~  290 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE  290 (447)
T ss_pred             cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence            468999999999999999999999997754433322222111100000             0000111111110000000


Q ss_pred             cCCceeeec--------CCcceeeeccccceEEEEecCCCEEEEEeCC---CeEEEEeCCCCeEeEEecCCCceEEEEEc
Q 012367          290 IPDEVFQIE--------ESPLQELHGHKGDVLDLAWSNSNYLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFN  358 (465)
Q Consensus       290 ~~~~~~~~~--------~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~D---gtV~lWD~~~~~~l~~~~h~~~V~~i~fs  358 (465)
                      .....+.+.        .+|...+..-.-.+.-++|++|.+.++.-.|   ..+-+||++.-+....+-...+|....|+
T Consensus       291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~Wd  370 (447)
T KOG4497|consen  291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWD  370 (447)
T ss_pred             cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeC
Confidence            001111111        1222222233456778999999766655555   46999999988777777788899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF  417 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i  417 (465)
                      |...+ ++.+.....+++|......++......-.|..++|+-+|..++..+.|..+..
T Consensus       371 P~~pr-L~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a  428 (447)
T KOG4497|consen  371 PGRPR-LVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCVA  428 (447)
T ss_pred             CCCce-EEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceEEE
Confidence            95554 44444456799999988888776666678999999999999999999987654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=2.1e-06  Score=88.09  Aligned_cols=125  Identities=12%  Similarity=0.180  Sum_probs=90.4

Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEEeCC---CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-EEeCCC--
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--  372 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D---gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-sgs~Dg--  372 (465)
                      ...+.+..+...+....|+|++ .|+..+.+   ..|.+||+.++...........+....|+| +++.|+ +.+.++  
T Consensus       189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~  267 (430)
T PRK00178        189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNP  267 (430)
T ss_pred             CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCc
Confidence            3445566677889999999986 66655533   369999999887655444445566789999 888776 444455  


Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CC--cEEEEEecCCce
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL  425 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG--~v~iwd~~~~~~  425 (465)
                      .|.+||+.++....+..+........|+|||+.|+..+. +|  .|+++++.+++.
T Consensus       268 ~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        268 EIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             eEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            588889999887777666667778899999998877664 34  466667766654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=3.7e-06  Score=86.57  Aligned_cols=118  Identities=18%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             ccccceEEEEecCCC-EEEEEeC-CC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE-EeCCCc--EEEEeC
Q 012367          307 GHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VRIWGV  379 (465)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~-Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s-gs~Dg~--I~iwd~  379 (465)
                      .+...+.+..|+|++ .|+..+. ++  .|.+||+.+++...............|+| +++.|+. .+.++.  |.++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEEEC
Confidence            455678889999986 5554443 33  58899998876543333333445789999 8887654 555664  888899


Q ss_pred             CCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCc--EEEEEecCCce
Q 012367          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDL  425 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~--v~iwd~~~~~~  425 (465)
                      .+++...+..+.......+|+|||+.|+..+. +|.  |.++|+.+++.
T Consensus       294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            88887777666667788999999998877664 444  55556666554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.55  E-value=1e-06  Score=84.61  Aligned_cols=159  Identities=15%  Similarity=0.331  Sum_probs=104.1

Q ss_pred             hhhccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~-LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ..+..|.+...+++.++...+ +.....+...++|+............      .........+....+.....    .+
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~------~~~~~~sv~v~dkagD~~~~----di  136 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAIS------FIREDTSVLVADKAGDVYSF----DI  136 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceee------eeeccceEEEEeecCCceee----ee
Confidence            345678899999999998873 44445555577777653221111100      01111111111111000000    11


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      +.....+...+-||-..+++++|+||+ +++++..|..|++-....-..+..|  +|...|..++.-+  ++.|++||.|
T Consensus       137 ~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD  214 (390)
T KOG3914|consen  137 LSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGD  214 (390)
T ss_pred             ecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCC
Confidence            111224455567999999999999975 8999999999999888776666666  6999999999976  5668999999


Q ss_pred             CcEEEEeCCCCeEEe
Q 012367          372 GKVRIWGVCEKRVVD  386 (465)
Q Consensus       372 g~I~iwd~~~~~~~~  386 (465)
                      ++|++||+.+++...
T Consensus       215 ~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLD  229 (390)
T ss_pred             CcEEEEecccCCccc
Confidence            999999999987553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.55  E-value=3.5e-06  Score=84.22  Aligned_cols=129  Identities=17%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             EEEEeCCCeEEEEeCCCCeEeEEecCCCce-EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee
Q 012367          323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  401 (465)
Q Consensus       323 l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V-~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp  401 (465)
                      +++-..++.|.+.|..+.+.+..+.....+ ..+.|+| |++++++.+.||.|.++|+.+.+++...........++++|
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            456677899999999999999999754444 4578999 99999999999999999999999988777777789999999


Q ss_pred             CCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcc-cccCCceeeEEEeecCC
Q 012367          402 DGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQGRISKN  453 (465)
Q Consensus       402 dg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~It~~~f~p~gs  453 (465)
                      ||++++++.. .+.+.++|..+.+... .+...+.. .....++.++-.+|.+.
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~-~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVK-TIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEE-EEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             CCCEEEEEecCCCceeEecccccccee-ecccccccccccCCCceeEEecCCCC
Confidence            9999998874 8999999998866533 33222110 01334666666665544

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.51  E-value=4.8e-05  Score=75.65  Aligned_cols=188  Identities=16%  Similarity=0.176  Sum_probs=118.4

Q ss_pred             EEEEEECCCCCEEEEEeC----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          225 IWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      -.-|+++|++++|+++.+    +|.|..|.+.......                                         .
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-----------------------------------------~   77 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-----------------------------------------T   77 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-----------------------------------------E
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-----------------------------------------E
Confidence            456889999999999877    4688888876521000                                         0


Q ss_pred             cceeeeccccceEEEEecCCC-EEEEE-eCCCeEEEEeCCC-CeEeEE---ecC-----------CCceEEEEEccCCCC
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGC-NQCLNV---FDH-----------HNYVTCVQFNPIDDN  363 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~-s~DgtV~lWD~~~-~~~l~~---~~h-----------~~~V~~i~fsp~~~~  363 (465)
                      .+............++++|++ +|+++ ..+++|.++++.. +.....   +.|           .....++.|+| +++
T Consensus        78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~  156 (345)
T PF10282_consen   78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGR  156 (345)
T ss_dssp             EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSS
T ss_pred             EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCC
Confidence            111222123455678888875 55544 4689999999986 443222   222           24578999999 988


Q ss_pred             EEEEEeC-CCcEEEEeCCCCe--EEe----cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec--CCceeee-Eeee
Q 012367          364 YFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS--GNDLKLE-KVDF  432 (465)
Q Consensus       364 ~l~sgs~-Dg~I~iwd~~~~~--~~~----~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~--~~~~~~~-~~~~  432 (465)
                      ++++... ...|.+|++....  +..    ........+.++|+|+|+++++... ++.|.+|++.  .+.+... .+..
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~  236 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST  236 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence            8877654 4579999997654  322    2345567899999999998877665 7889999999  5544333 2222


Q ss_pred             cCcccccCCceeeEEEeecCCc
Q 012367          433 HDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       433 ~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ..........-.++.++|+|.|
T Consensus       237 ~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  237 LPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             CETTSCSSSSEEEEEE-TTSSE
T ss_pred             ccccccccCCceeEEEecCCCE
Confidence            2111112246788899999876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.49  E-value=1.9e-07  Score=95.47  Aligned_cols=121  Identities=21%  Similarity=0.410  Sum_probs=93.6

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ..+.||...|+.+.|+|+.. .|||++.|-.|..||+.+...                                      
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------------------------------------  149 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------------------------------------  149 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------------------------------
Confidence            34679999999999999765 899999999999999987422                                      


Q ss_pred             eeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                            |+..+..-...-..++|+- ++.+++.+..+.|.+||++.|. ++..+ +|-..|+.+.|+......+.+.+.|
T Consensus       150 ------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  150 ------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             ------ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence                  2222222233445688884 5677777888999999998764 44445 4778899999988667788999999


Q ss_pred             CcEEEEeCC
Q 012367          372 GKVRIWGVC  380 (465)
Q Consensus       372 g~I~iwd~~  380 (465)
                      ++|+.||..
T Consensus       224 ~tvkfw~y~  232 (1081)
T KOG0309|consen  224 GTVKFWDYS  232 (1081)
T ss_pred             Cceeeeccc
Confidence            999999874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.49  E-value=5.6e-07  Score=83.56  Aligned_cols=203  Identities=12%  Similarity=0.231  Sum_probs=127.6

Q ss_pred             CcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCC-c--c---cccCCCeEEeccCCCCceeEecCCce
Q 012367          223 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGG-F--G---SNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       223 ~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ..|..+.|..++.  .++..+.|.+|++|.+.+............. +  .   .......+.........         
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd---------  156 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD---------  156 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc---------
Confidence            4588888876544  6666778999999998764322111111000 0  0   00000111111111110         


Q ss_pred             eeecCCcceee-eccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-E--eEEe-cCC-----CceEEEEEccCCCCE
Q 012367          295 FQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-C--LNVF-DHH-----NYVTCVQFNPIDDNY  364 (465)
Q Consensus       295 ~~~~~~~~~~~-~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~--l~~~-~h~-----~~V~~i~fsp~~~~~  364 (465)
                      ..+..+|.+.+ ..|.--|.++.++.+...+-++.|-.|.+|++.-.. +  +-.+ .|.     ..|++..|+|...+.
T Consensus       157 ~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~  236 (460)
T COG5170         157 EIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             eEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence            11112344444 578899999999988755556678899999986322 1  1112 222     358899999977888


Q ss_pred             EEEEeCCCcEEEEeCCCCeEE-----------------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          365 FISGSIDGKVRIWGVCEKRVV-----------------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~-----------------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      |.-.+..|.|++-|++...+.                 -+.+....|..+.|+|+|+++++-+.- +|++||++..+-++
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pi  315 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPI  315 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCc
Confidence            888888999999999843211                 022334568889999999999887654 89999999888888


Q ss_pred             eEeeecCc
Q 012367          428 EKVDFHDR  435 (465)
Q Consensus       428 ~~~~~~~~  435 (465)
                      .++.+|..
T Consensus       316 kTi~~h~~  323 (460)
T COG5170         316 KTIPMHCD  323 (460)
T ss_pred             eeechHHH
Confidence            77765543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.47  E-value=7.8e-06  Score=74.74  Aligned_cols=130  Identities=14%  Similarity=0.064  Sum_probs=96.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eEE--ecccCCCCeE
Q 012367          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVV--DWADVRDVIS  395 (465)
Q Consensus       322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--~~~--~~~~~~~~V~  395 (465)
                      -+..++.|.++++.++.-+..... -|.  -.+.++.++| ++++.++.+....|-.|.+...  .++  ......+.-.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF  207 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF  207 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccce-eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence            477788999999998875433222 222  2388999999 9999999999999999988643  222  2444556667


Q ss_pred             EEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367          396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       396 sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                      +..|+.....+|+++.||+|.|||++....+...+.-  .+-.+.+.+..+.|+|-|..|
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss--trp~hnGa~R~c~Fsl~g~lD  265 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS--TRPHHNGAFRVCRFSLYGLLD  265 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhcc--cCCCCCCceEEEEecCCCcce
Confidence            8899999999999999999999999977665543321  222356789999999866554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.47  E-value=3.8e-05  Score=75.49  Aligned_cols=199  Identities=12%  Similarity=0.020  Sum_probs=116.5

Q ss_pred             EEEEEECCCCCEEEEEe-C-CCcEEEEecCCceeeeeeecCCCCcccccCCC-eEEeccCCCCceeEecCCceeeecCCc
Q 012367          225 IWTLKFSPDGRYLASGG-E-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs-~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      -..++++|||++|+... . +..|.|.|+.+.+.......+........... +.........................+
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence            34789999999988776 3 79999999999888776666554332222111 111111111111111000000000000


Q ss_pred             ceeeeccccceEE-EEecC-CCEEEEEeCCCeEEEEeCCCC-----eEeEEec--------CCCceEEEEEccCCCCEEE
Q 012367          302 LQELHGHKGDVLD-LAWSN-SNYLLSCSMDKTVRMWQVGCN-----QCLNVFD--------HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       302 ~~~~~gh~~~V~~-l~~s~-~~~l~s~s~DgtV~lWD~~~~-----~~l~~~~--------h~~~V~~i~fsp~~~~~l~  366 (465)
                        .+.+-...+.. -.+.+ ++..+-.+..|+|.+-|+...     ..+..+.        ......-++++| +++.++
T Consensus       187 --vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~ly  263 (352)
T TIGR02658       187 --VFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIY  263 (352)
T ss_pred             --eecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEE
Confidence              11110000000 02344 553333334499999996433     3333321        223344599999 766666


Q ss_pred             EEe----------CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEEecCCcee
Q 012367          367 SGS----------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYKASGNDLK  426 (465)
Q Consensus       367 sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd~~~~~~~  426 (465)
                      ...          ..+.|.++|..+++++........+..++++|||+ .|++.. .++.|.++|+.+.+..
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            632          12579999999999998777778999999999999 887777 5788999999887663

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=3e-05  Score=78.90  Aligned_cols=174  Identities=7%  Similarity=-0.038  Sum_probs=106.6

Q ss_pred             CcEEEEEECCCCCE-EEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          223 GCIWTLKFSPDGRY-LASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       223 ~~I~~l~fspdg~~-LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      +.+....|+|||+. ++..+.+   ..|.++|+.++...                                         
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----------------------------------------  226 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----------------------------------------  226 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----------------------------------------
Confidence            37889999999984 6644443   45777777664321                                         


Q ss_pred             CCcceeeeccccceEEEEecCCC-E-EEEEeCC--CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-CC-
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG-  372 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~-l~s~s~D--gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg-  372 (465)
                           .+....+.+....|+|++ . +++.+.+  ..|.++|+.++.......+........|+| |++.|+-.+. .+ 
T Consensus       227 -----~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~  300 (419)
T PRK04043        227 -----KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGY  300 (419)
T ss_pred             -----EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCC
Confidence                 111123344556799986 3 3344433  568888988876544334443345568999 8887766653 23 


Q ss_pred             -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---------CcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---------G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                       .|.+.|+.++...........  ...|+|||+.|+..+..         ..|.+.|+.++....  +...       ..
T Consensus       301 ~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~-------~~  369 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN-------GV  369 (419)
T ss_pred             ceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC-------CC
Confidence             588888888776553322222  24899999988777654         257777877775432  2111       12


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      .....|+|+|..
T Consensus       370 ~~~p~~SPDG~~  381 (419)
T PRK04043        370 NQFPRFSSDGGS  381 (419)
T ss_pred             cCCeEECCCCCE
Confidence            234677887764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1.1e-06  Score=86.20  Aligned_cols=210  Identities=19%  Similarity=0.257  Sum_probs=131.6

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (465)
                      ..+..|.++|.-++.-|+.. -|.|+|+|+.|.-.|+........................+...........+...+  
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            34567999999999999755 799999999999999876544332221111000000000011111111011110000  


Q ss_pred             -ceeeec-------CCcceeee------ccccceEEEEecCC-CEEEEEeCCCeEEEEeCC--CC----------eEeEE
Q 012367          293 -EVFQIE-------ESPLQELH------GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVG--CN----------QCLNV  345 (465)
Q Consensus       293 -~~~~~~-------~~~~~~~~------gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~--~~----------~~l~~  345 (465)
                       .++...       ..++..+.      ...-.|++++++.+ +-|+++..|-.|+++.-.  .|          ..++.
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~  385 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR  385 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence             111110       01122222      22356899999954 578888899999999532  22          11222


Q ss_pred             -e-cCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          346 -F-DHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       346 -~-~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                       + +|.+  .|.++-|--....|+++||.-|.|.||+-.+++++. +.+....|+|+.-+|--..||+.+.|.-|+||-.
T Consensus       386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence             3 3443  578887643389999999999999999999999887 4445558999999999999999999999999987


Q ss_pred             cCCce
Q 012367          421 SGNDL  425 (465)
Q Consensus       421 ~~~~~  425 (465)
                      .+...
T Consensus       466 ~~~er  470 (559)
T KOG1334|consen  466 LTAER  470 (559)
T ss_pred             Ccccc
Confidence            54433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.39  E-value=1.1e-06  Score=57.30  Aligned_cols=38  Identities=34%  Similarity=0.936  Sum_probs=34.3

Q ss_pred             CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          340 NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       340 ~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      ++++..+ .|...|++++|+| ++++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            3567777 5889999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.39  E-value=0.00013  Score=72.46  Aligned_cols=193  Identities=13%  Similarity=0.183  Sum_probs=116.5

Q ss_pred             cEEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          224 CIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      .-..++++|++++|+++. .+|.|.++++.............            .            ...    ....+.
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~------------~------------~~g----~g~~~~  139 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV------------R------------HEG----SGPNPD  139 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE------------E------------SEE----EESSTT
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeec------------c------------cCC----CCCccc
Confidence            345799999999999887 58999999998632111100000            0            000    000000


Q ss_pred             eeeeccccceEEEEecCCC-EEEE-EeCCCeEEEEeCCCCe--Ee--EE--ecCCCceEEEEEccCCCCEEEEE-eCCCc
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLS-CSMDKTVRMWQVGCNQ--CL--NV--FDHHNYVTCVQFNPIDDNYFISG-SIDGK  373 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s-~s~DgtV~lWD~~~~~--~l--~~--~~h~~~V~~i~fsp~~~~~l~sg-s~Dg~  373 (465)
                      +   .-.....++.++|++ ++++ .-....|.+|++....  ..  ..  +........+.|+| ++++++.. -.++.
T Consensus       140 r---q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~  215 (345)
T PF10282_consen  140 R---QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNT  215 (345)
T ss_dssp             T---TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTE
T ss_pred             c---cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCc
Confidence            0   112345678899985 4444 3445689999997654  32  22  24556789999999 87776554 55788


Q ss_pred             EEEEeCC--CCeEEe-----cc--c--CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec--CCceeee-EeeecCcccc
Q 012367          374 VRIWGVC--EKRVVD-----WA--D--VRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS--GNDLKLE-KVDFHDRKKT  438 (465)
Q Consensus       374 I~iwd~~--~~~~~~-----~~--~--~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~--~~~~~~~-~~~~~~~~~~  438 (465)
                      |.++++.  ++.+..     ..  +  .......|+++|||++|+++.. .+.|.+|+++  ++++... .+...     
T Consensus       216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-----  290 (345)
T PF10282_consen  216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-----  290 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-----
T ss_pred             EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-----
Confidence            9999987  443321     11  1  1236889999999999888775 6789999994  3455544 22222     


Q ss_pred             cCCceeeEEEeecCCc
Q 012367          439 SGNKITGIQGRISKNY  454 (465)
Q Consensus       439 ~~~~It~~~f~p~gs~  454 (465)
                       +..-.++.++|+|.+
T Consensus       291 -G~~Pr~~~~s~~g~~  305 (345)
T PF10282_consen  291 -GKFPRHFAFSPDGRY  305 (345)
T ss_dssp             -SSSEEEEEE-TTSSE
T ss_pred             -CCCccEEEEeCCCCE
Confidence             345778888888765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.39  E-value=0.00013  Score=69.74  Aligned_cols=194  Identities=16%  Similarity=0.202  Sum_probs=129.5

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCc--eeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSV--AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +-++.+..+=|+|+|++++|+++-.+   |.|-.|.+...  ......                                
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln--------------------------------   82 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN--------------------------------   82 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee--------------------------------
Confidence            34677889999999999999998655   67777776642  111000                                


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCC-CeE---eEEecCCCc----------eEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQ  356 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~-~~~---l~~~~h~~~----------V~~i~  356 (465)
                               .....|  .+-+.+++++++ +|+++. .-|.|.++-++. |..   +..+.|.+.          +.+..
T Consensus        83 ---------~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~  151 (346)
T COG2706          83 ---------RQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN  151 (346)
T ss_pred             ---------ccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence                     011112  222678888876 555554 458899998865 432   334456555          88999


Q ss_pred             EccCCCCEEEEEeCC-CcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEe
Q 012367          357 FNPIDDNYFISGSID-GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       357 fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~  430 (465)
                      |.| +++++++.... -.|.+|++..+.+..    ........+.|.|+|++++..+.+. +++|.+|........++.+
T Consensus       152 ~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         152 FTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             eCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence            999 99999888653 469999999876553    2234566889999999999888776 9999999999853333322


Q ss_pred             ee---cCcccccCCceeeEEEeecCCcc
Q 012367          431 DF---HDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       431 ~~---~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                      ..   -..--...+.-..+.++|+|.|.
T Consensus       231 Q~i~tlP~dF~g~~~~aaIhis~dGrFL  258 (346)
T COG2706         231 QTIDTLPEDFTGTNWAAAIHISPDGRFL  258 (346)
T ss_pred             eeeccCccccCCCCceeEEEECCCCCEE
Confidence            11   11112234667777888887763

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.37  E-value=5.4e-06  Score=83.24  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=94.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      ..|-+.|+++.++.+-..|.|++.|+.|..|+......                                          
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------------------------------------------  136 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------------------------------------------  136 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEeccccee------------------------------------------
Confidence            37999999999999999999999999999999987533                                          


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC-----CCEEEE-EeC
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID-----DNYFIS-GSI  370 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~-----~~~l~s-gs~  370 (465)
                         ++.+.+.+..+.+++++|++ .|++++  ++|++||+.+++.+..| +|.++|.+++|-- .     |.++.+ ...
T Consensus       137 ---~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  137 ---IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSAAA  210 (541)
T ss_pred             ---eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeecccc
Confidence               34455667788899999985 777776  78999999999999999 6889999999977 4     455544 455


Q ss_pred             CCcEEEEeCCC
Q 012367          371 DGKVRIWGVCE  381 (465)
Q Consensus       371 Dg~I~iwd~~~  381 (465)
                      +..+.+|-+..
T Consensus       211 ~r~i~~w~v~~  221 (541)
T KOG4547|consen  211 ERGITVWVVEK  221 (541)
T ss_pred             ccceeEEEEEc
Confidence            66788887654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.36  E-value=9.2e-07  Score=90.55  Aligned_cols=202  Identities=15%  Similarity=0.243  Sum_probs=129.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc--eeee-
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE--VFQI-  297 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-  297 (465)
                      -.+++.++.++|.|+-+|.++.-| +.|-|+...-.......+.........  ..........-+..+.+.+  +|.+ 
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~--qws~h~a~~~wiVsts~qkaiiwnlA   99 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADV--QWSPHPAKPYWIVSTSNQKAIIWNLA   99 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcce--ecccCCCCceeEEecCcchhhhhhhh
Confidence            356788999999999999999887 455566553332222222221110000  0000000000111111111  1222 


Q ss_pred             ---cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367          298 ---EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       298 ---~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                         .......+.||...|+++.|+|..  .+++++.|-.|..||+++.. ++..+ .-......|.|+-.+++.+|+. .
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-h  178 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-H  178 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-c
Confidence               122344678999999999999864  89999999999999998764 34444 2444567889998777777764 4


Q ss_pred             CCcEEEEeCCCCe--EEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCcee
Q 012367          371 DGKVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       371 Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .+.|++||++.+.  +....+|...|+.+.|.. -...+.+.+.||+|++||.+.....
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            6789999998654  334677888888888875 2346888999999999998765443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=8.9e-07  Score=83.38  Aligned_cols=139  Identities=13%  Similarity=0.248  Sum_probs=103.8

Q ss_pred             cccceEEEEecC-CCEEEEEeCCCeEEEEeCCCC-----eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367          308 HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCN-----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       308 h~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~-----~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~  381 (465)
                      ..++|.++.|.. ++++..|...|.|-..|+++.     .+...+-|...|++++.-..++.+|++.+.+|+|++||++.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            567888888886 679999999999999999864     57788889999999988777889999999999999999985


Q ss_pred             Ce----EEecccCCCCeEE--EEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          382 KR----VVDWADVRDVISA--ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       382 ~~----~~~~~~~~~~V~s--v~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      -+    +....+|-+.-.-  +-..+....+++++.|.-.|||.++.+.+.- ++.+...  .+...|.+++|.
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~-tipf~~s--~~e~d~~sv~~~  401 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC-TIPFPYS--ASEVDIPSVAFD  401 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee-ccCCCCc--cccccccceehh
Confidence            43    3456666443322  2334566788889999999999999887733 3333221  122345555554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.36  E-value=3.8e-06  Score=88.06  Aligned_cols=148  Identities=18%  Similarity=0.300  Sum_probs=119.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .|+-|+.  ++++|.+|..-|+|.+-|..+.                                             +.++
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---------------------------------------------~~ih  211 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---------------------------------------------ETIH  211 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcC---------------------------------------------ceee
Confidence            4666665  6789999999999999998763                                             4578


Q ss_pred             eeeccccceEEEEecCCCEEEEEeC---------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          304 ELHGHKGDVLDLAWSNSNYLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~~l~s~s~---------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                      ++.+|++.|.++... ++.|++|+.         |.-|+|||++..+.+.-++......-+.|+|.-...++.++..|..
T Consensus       212 t~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  212 TFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             eeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccce
Confidence            899999999998865 467888875         4568999999988887777555557788999777888999999999


Q ss_pred             EEEeC---CCCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          375 RIWGV---CEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       375 ~iwd~---~~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      .+-|.   .+..  +.........+.+++++++|+.++.|..+|.|.+|-
T Consensus       291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            99993   3332  223444556699999999999999999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=4.2e-06  Score=85.53  Aligned_cols=205  Identities=16%  Similarity=0.250  Sum_probs=137.8

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      ..+.+.+.|+|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+.-....                           
T Consensus        57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM---------------------------  109 (1189)
T KOG2041|consen   57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM---------------------------  109 (1189)
T ss_pred             cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------------------
Confidence            45678889999999999999999999999999999999999987653211000                           


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~  366 (465)
                                      .-.-..+-|.+++|+.+| .+.....||.|.+=.+..++.-..--.......+.|++ |...++
T Consensus       110 ----------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~L  172 (1189)
T KOG2041|consen  110 ----------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQAL  172 (1189)
T ss_pred             ----------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHH
Confidence                            001234678899998765 78888888888877665443221111122345788999 888888


Q ss_pred             EEeCCCcEEEEeCCCC--------eEEe----cccCCCCeEEEEEe--------eCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          367 SGSIDGKVRIWGVCEK--------RVVD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~--------~~~~----~~~~~~~V~sv~~s--------pdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .+-..|.+.++|-...        ..+.    +......|..++|.        ||...|+++-.+|.+.|-.-.+..-+
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            8888999999997542        1222    22233446667764        47789999999999988765543332


Q ss_pred             eeEeeecCcccccCCceeeEEEeecCCc---------------cceeeeecCC
Q 012367          427 LEKVDFHDRKKTSGNKITGIQGRISKNY---------------DNFRRFQTPY  464 (465)
Q Consensus       427 ~~~~~~~~~~~~~~~~It~~~f~p~gs~---------------d~~~~~~~p~  464 (465)
                      .. ++       .+-+|+|.+|+++|..               .|...+.+||
T Consensus       253 vv-~d-------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  253 VV-VD-------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY  297 (1189)
T ss_pred             eE-Ee-------cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence            21 11       1245666666666543               3356677776

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=6.1e-07  Score=88.98  Aligned_cols=193  Identities=16%  Similarity=0.251  Sum_probs=130.3

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      +..+...+|.|.-+..-.+.....+..++++|+.+|..+.|-.+.++++++  ||.|++||.--+.......        
T Consensus       752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~--------  821 (1034)
T KOG4190|consen  752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQME--------  821 (1034)
T ss_pred             eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhh--------
Confidence            345667778887766666666677888999999999999999998888765  7899999964322111000        


Q ss_pred             ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEec-
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFD-  347 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~~-  347 (465)
                                                   ..+   -.+-.+.|.++.--.... ++-|+...||+++|.+...-...++ 
T Consensus       822 -----------------------------dap---k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  822 -----------------------------DAP---KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             -----------------------------cCc---ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence                                         000   012223344443111223 4445788999999999876544442 


Q ss_pred             -----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEE-EEe
Q 012367          348 -----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKA  420 (465)
Q Consensus       348 -----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i-wd~  420 (465)
                           .+..+.|++..| .|++++.+-..|.|.+.|.++|+++. |.........++ .|..+.++....|.++-+ |..
T Consensus       870 cna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             ccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence                 335689999999 99999999999999999999999876 665554444443 345556666666777777 765


Q ss_pred             cCCcee
Q 012367          421 SGNDLK  426 (465)
Q Consensus       421 ~~~~~~  426 (465)
                      .++...
T Consensus       948 ldgimh  953 (1034)
T KOG4190|consen  948 LDGIMH  953 (1034)
T ss_pred             cCCeee
Confidence            554443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.35  E-value=5e-05  Score=70.43  Aligned_cols=198  Identities=13%  Similarity=0.107  Sum_probs=95.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC-----CCceeEecCC---ceee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK-----SSHVPVVIPD---EVFQ  296 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~  296 (465)
                      =+.++||||+.+||.+...|+|+++|+.....-..................+.+....     .....+....   ..+-
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            4579999999999999999999999998643322211111111111111111111111     0011111111   1111


Q ss_pred             ec------CCcceeee--c-cccceEEEEecCC-CEEEEEeC-CCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCE
Q 012367          297 IE------ESPLQELH--G-HKGDVLDLAWSNS-NYLLSCSM-DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       297 ~~------~~~~~~~~--g-h~~~V~~l~~s~~-~~l~s~s~-DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~  364 (465)
                      +.      ....+.+.  . +...|.++.++|. ++|+.|+. ...-..+... ..-+..++ -.+......+...+...
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-SCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc-ccCceEEEEcCCCCcEEEccccCccc
Confidence            11      11122222  2 4678999999997 55555544 3221111100 00011111 01111111111101222


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      -.....   ..+|.+.+.+... .....+.|..++.+|||..|++...+|.|.+|++..-.++
T Consensus       205 ~~~~~~---~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  205 TASSKR---RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             cccccc---cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            212111   2333333333322 2335678999999999999999999999999999876554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.31  E-value=8.6e-07  Score=98.51  Aligned_cols=151  Identities=18%  Similarity=0.324  Sum_probs=95.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCCceeEecCCceeeecCCc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      ..|+.+.|+.+|+.+..+..||.+-+|.+..... ......+.........+.+... ........+..++.........
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~-~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY-TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCCcce-eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence            6677788999999999999999999999873111 1100011110000011111110 0111111111222222222223


Q ss_pred             ceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          302 LQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      ++  ..|.+.++++++.|. ..|+||+.+|.|+|||++..+.++.++.        +.  ...+|++|+..|.|+||++.
T Consensus      2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEcc
Confidence            33  689999999999996 5899999999999999998877766653        33  46799999999999999998


Q ss_pred             CCeEEe
Q 012367          381 EKRVVD  386 (465)
Q Consensus       381 ~~~~~~  386 (465)
                      .-..+.
T Consensus      2399 ~~~ll~ 2404 (2439)
T KOG1064|consen 2399 EFGLLH 2404 (2439)
T ss_pred             ccchhh
Confidence            765554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.24  E-value=0.0003  Score=69.24  Aligned_cols=194  Identities=10%  Similarity=0.100  Sum_probs=127.2

Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCC----CcccccCCCeEE-eccCCCCceeEecCCceeeecCCcc-
Q 012367          230 FSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDG----GFGSNAKEGKIK-FGKKKSSHVPVVIPDEVFQIEESPL-  302 (465)
Q Consensus       230 fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  302 (465)
                      .+.||+.++- +.-|-|.++|..+......-.. +..    ..........+. +....+.....+.-+..|....-.- 
T Consensus       274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence            4567775543 2346699999877543322111 100    000000011111 2222333344444444444422111 


Q ss_pred             eeeeccccceEEEEecCC-CEEEEEeCCC-eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          303 QELHGHKGDVLDLAWSNS-NYLLSCSMDK-TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~-~~l~s~s~Dg-tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      ..--+|.+.|.-..+..+ .-++.|..|| .+-|+|..++...+....-+.|.++..+| +|.+++.+.....|-+.|+.
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence            122367777877777643 3688888998 89999999998777777888999999999 99999999888889999999


Q ss_pred             CCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCC----cEEEEEecCCce
Q 012367          381 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL  425 (465)
Q Consensus       381 ~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG----~v~iwd~~~~~~  425 (465)
                      ++.+.... ...+.|+.+.|||+++++|-+--+|    .|++||+.+++.
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            99876543 3557799999999999999876554    789999998766

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.24  E-value=8.1e-05  Score=73.16  Aligned_cols=144  Identities=12%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg-~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      +|.+.|.-..+..++.-++.|..|| .+-|+|..++                                            
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------------------------------  392 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------------------------------  392 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------------------------
Confidence            5666677777766666677777777 6777776653                                            


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC----
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG----  372 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg----  372 (465)
                        .++.+.+.-+.|.+++.+++| +++.+.....+.+.|+.++.....- ...+-|+.+.|+| +++++|-+--+|    
T Consensus       393 --e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq  469 (668)
T COG4946         393 --EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ  469 (668)
T ss_pred             --eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence              344555667889999999997 5667776778999999998764433 3556799999999 999999876665    


Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs  410 (465)
                      .|+++|+.++++.........=.+-+|.|||++|.--+
T Consensus       470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            58999999999988766666667788999999876655

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=1.1e-05  Score=81.53  Aligned_cols=137  Identities=18%  Similarity=0.298  Sum_probs=94.1

Q ss_pred             ceEEEEecC--CCEEEE----EeCCCe----EEEEeCCCCeE----eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          311 DVLDLAWSN--SNYLLS----CSMDKT----VRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       311 ~V~~l~~s~--~~~l~s----~s~Dgt----V~lWD~~~~~~----l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      ...++.|+-  +..+.|    .+.+|.    -++|++..++.    +..+.....|.|++++| +...++.|+.||.|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            445666663  233333    334443    35666655432    23345888999999999 9999999999999999


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee----------EeeecCcccccCCceeeE
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----------KVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~----------~~~~~~~~~~~~~~It~~  446 (465)
                      ||...+.. ......-.++.++|||+|..+++|+..|.+.+||+.-+.+...          .+.+.. .......+..+
T Consensus       286 yD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~-yf~~~~~L~~i  363 (545)
T PF11768_consen  286 YDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSK-YFRVSSSLVHI  363 (545)
T ss_pred             EEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeeh-hccCcchhhee
Confidence            99877633 3345556789999999999999999999999999874443322          222322 12234567777


Q ss_pred             EEee
Q 012367          447 QGRI  450 (465)
Q Consensus       447 ~f~p  450 (465)
                      +|.+
T Consensus       364 qW~~  367 (545)
T PF11768_consen  364 QWAP  367 (545)
T ss_pred             Eecc
Confidence            7773

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.21  E-value=8.3e-05  Score=73.71  Aligned_cols=200  Identities=18%  Similarity=0.226  Sum_probs=119.9

Q ss_pred             CcEEEEEECCCCC--EEE-----EEeCCCcEEEEecCCceeeee--eecCCCCc-ccccCCCeEEecc-CCC-CceeEe-
Q 012367          223 GCIWTLKFSPDGR--YLA-----SGGEDGVVRIWHVTSVAASCK--SFTDDGGF-GSNAKEGKIKFGK-KKS-SHVPVV-  289 (465)
Q Consensus       223 ~~I~~l~fspdg~--~La-----Sgs~Dg~V~iWd~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~-  289 (465)
                      ..|....|+|.|+  .||     ..+.++.++||.+........  ++...... ........+.+.. +.. ..-... 
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            4577788888643  344     347788999999875433221  11111111 0111111111100 000 000001 


Q ss_pred             -cCCceeeecCCcceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE
Q 012367          290 -IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       290 -~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l  365 (465)
                       ..-.++.+....+....+-.++|.+.+|.|..   -+++|.++.++.++|++..  +........=+.+.|+| .++++
T Consensus       254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~i  330 (561)
T COG5354         254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERYI  330 (561)
T ss_pred             cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccEE
Confidence             11123334444444444668899999999853   3556789999999999876  44444444456788999 99999


Q ss_pred             EEEeCC---CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCce
Q 012367          366 ISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDL  425 (465)
Q Consensus       366 ~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~  425 (465)
                      +.++.|   |.|-+||......+.-.-.....+-+.|+|||+++.+...      |..+.|||+.+.+.
T Consensus       331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            998876   6799999887655442222223455679999999888763      78899999987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.21  E-value=0.00024  Score=80.39  Aligned_cols=139  Identities=9%  Similarity=0.082  Sum_probs=92.6

Q ss_pred             eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEecC---------------CCceEEEEEccCCCC-EEEEEeCCCc
Q 012367          312 VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDN-YFISGSIDGK  373 (465)
Q Consensus       312 V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h---------------~~~V~~i~fsp~~~~-~l~sgs~Dg~  373 (465)
                      ..+++++| ++ ++++.+.++.|++||..++........               -.....|+|+| ++. ++++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCe
Confidence            35789998 45 567778889999999987754322110               12356799999 766 6666677899


Q ss_pred             EEEEeCCCCeEEeccc----------------------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEee
Q 012367          374 VRIWGVCEKRVVDWAD----------------------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  431 (465)
Q Consensus       374 I~iwd~~~~~~~~~~~----------------------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~  431 (465)
                      |++||+.++......+                      .-.....++++|+|+.+++-+.+++|++||..++....  +.
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t--ia  841 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT--LA  841 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE--Ee
Confidence            9999998765321110                      01134689999999988888899999999998775532  21


Q ss_pred             ecCc--------ccccCCceeeEEEeecCC
Q 012367          432 FHDR--------KKTSGNKITGIQGRISKN  453 (465)
Q Consensus       432 ~~~~--------~~~~~~~It~~~f~p~gs  453 (465)
                      ..+.        .........++.+.++|.
T Consensus       842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        842 GTGKAGFKDGKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             ccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence            1111        011224567788877764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.19  E-value=0.00014  Score=80.87  Aligned_cols=199  Identities=14%  Similarity=0.220  Sum_probs=115.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCCceeEecCCce----e
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPVVIPDEV----F  295 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~  295 (465)
                      -.+.|.|++||||+..||.+..+++|.+-.- +...............   ....+.++ +.......... ++.    .
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~---~~~~VsVGWGkKeTQF~Gs~-gK~aa~~~  193 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFG---ESKHVSVGWGKKETQFHGSA-GKAAARQL  193 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccC---CCceeeeccCcccCccCcch-hhhhhhhc
Confidence            3567999999999999999999999887642 2222222111111000   00111111 00000000000 000    0


Q ss_pred             eecCCc---ceeeeccccceEEEEecCCC-EEEEEeC---C---CeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCE
Q 012367          296 QIEESP---LQELHGHKGDVLDLAWSNSN-YLLSCSM---D---KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       296 ~~~~~~---~~~~~gh~~~V~~l~~s~~~-~l~s~s~---D---gtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~  364 (465)
                      .-...+   ...+. +...-..|+|-.|| ++++.+.   .   ..+|||+-. |....+-. -.+--.+++|.| .|++
T Consensus       194 ~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~l  270 (928)
T PF04762_consen  194 RDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNL  270 (928)
T ss_pred             cCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCE
Confidence            000000   11222 44456689999887 6665553   2   579999976 54433332 223345789999 9999


Q ss_pred             EEEEeC---CCcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          365 FISGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       365 l~sgs~---Dg~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ||+.-.   ...|.+|....-+--.    +......|..++|++|+..|++...|. |.+|-..+...-++
T Consensus       271 IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK  340 (928)
T PF04762_consen  271 IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK  340 (928)
T ss_pred             EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence            998765   3467788765533222    334567899999999999999987665 99999988876554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.18  E-value=0.00017  Score=66.24  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=100.4

Q ss_pred             eEEEEecCCC-EEEEEeCCCeEEEEeCCCC--eEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-
Q 012367          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-  385 (465)
Q Consensus       312 V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~--~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-  385 (465)
                      +.+++++|++ ++++.+....|-.|.+...  ..++..  ...+.-.+..|+. ....||++..||++.|||++..... 
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence            7788999986 6777777888999988643  233322  3445557888998 8889999999999999999864322 


Q ss_pred             -----ecccCCCCeEEEEEeeCCC--EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC-CceeeEEEeecC
Q 012367          386 -----DWADVRDVISAICYIPDGK--GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG-NKITGIQGRISK  452 (465)
Q Consensus       386 -----~~~~~~~~V~sv~~spdg~--~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~It~~~f~p~g  452 (465)
                           ....|.+.+..+.|+|.|.  .|+..-.-+.+++-|+++..-.........+..++. ..|+|-.|+-.+
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence                 1345889999999998664  455555678999999998876555444444444444 448888777554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=0.00019  Score=72.02  Aligned_cols=132  Identities=19%  Similarity=0.312  Sum_probs=95.1

Q ss_pred             ceEEEEecCCC--EE--EEEeCCC---------eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE--EeCCCcEE
Q 012367          311 DVLDLAWSNSN--YL--LSCSMDK---------TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS--GSIDGKVR  375 (465)
Q Consensus       311 ~V~~l~~s~~~--~l--~s~s~Dg---------tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s--gs~Dg~I~  375 (465)
                      +=..+.|++.+  +|  ++...|+         ++++.++....+.-.+...++|.+++|+| +++-|++  |-.-.++.
T Consensus       219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVT  297 (566)
T ss_pred             ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEecccceEE
Confidence            33467888754  33  3444454         68888888667777778899999999999 7765544  44567899


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      |||++...+..+.  .++=+++-|+|.|++|+.++-   .|.+-|||+.+.++ +..+..        ..-|=+.|+|+|
T Consensus       298 ifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a--------~~tt~~eW~PdG  366 (566)
T KOG2315|consen  298 IFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-IAKFKA--------ANTTVFEWSPDG  366 (566)
T ss_pred             EEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh-cccccc--------CCceEEEEcCCC
Confidence            9999887665543  345578899999999988875   58999999988443 222221        335667899999


Q ss_pred             Cc
Q 012367          453 NY  454 (465)
Q Consensus       453 s~  454 (465)
                      .|
T Consensus       367 e~  368 (566)
T KOG2315|consen  367 EY  368 (566)
T ss_pred             cE
Confidence            87

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.16  E-value=1.1e-05  Score=73.55  Aligned_cols=92  Identities=16%  Similarity=0.180  Sum_probs=71.4

Q ss_pred             EEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE--ecccCCCCeEEEEEee-CCCEEE
Q 012367          332 VRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP-DGKGFI  407 (465)
Q Consensus       332 V~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~V~sv~~sp-dg~~l~  407 (465)
                      .+.|+++..+.+..- .....|++++-+|...+.+++|+.||.+-+||.+.....  .+..|+..|+.+-|+| ++..|+
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            455555433322221 233459999999988888999999999999999886433  2778999999999999 678999


Q ss_pred             EEEcCCcEEEEEecCC
Q 012367          408 VGSITGTCHFYKASGN  423 (465)
Q Consensus       408 sgs~dG~v~iwd~~~~  423 (465)
                      +++.||.+--||.++.
T Consensus       241 t~sedGslw~wdas~~  256 (319)
T KOG4714|consen  241 TCSEDGSLWHWDASTT  256 (319)
T ss_pred             EecCCCcEEEEcCCCc
Confidence            9999999999998863

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=5.3e-06  Score=78.28  Aligned_cols=138  Identities=15%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      .++.|.++.|...++++..|...|.|.+.|+.....-                                        ...
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG----------------------------------------~~~  290 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG----------------------------------------NGW  290 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC----------------------------------------CCc
Confidence            4566888888888888888888888888888753110                                        011


Q ss_pred             cceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeE---eEEe-cCCCce--EEEEEccCCCCEEEEEeCCC
Q 012367          301 PLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQC---LNVF-DHHNYV--TCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~---l~~~-~h~~~V--~~i~fsp~~~~~l~sgs~Dg  372 (465)
                      +.+.+ -|...|+++..-.  +.+|++++++|+|++||++--++   +..+ +|-+.-  .-+..++ ....+++++.|-
T Consensus       291 ~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDc  368 (425)
T KOG2695|consen  291 CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDC  368 (425)
T ss_pred             ceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCee
Confidence            22222 4888999988764  46899999999999999987777   6666 454322  2233455 677888899999


Q ss_pred             cEEEEeCCCCeEEecccCCC-----CeEEEEEe
Q 012367          373 KVRIWGVCEKRVVDWADVRD-----VISAICYI  400 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~-----~V~sv~~s  400 (465)
                      ..|||.+..+.++.......     .+.+++|.
T Consensus       369 ytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EEEEEecccCceeeccCCCCccccccccceehh
Confidence            99999999999887555443     34555554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.00014  Score=75.82  Aligned_cols=150  Identities=13%  Similarity=0.237  Sum_probs=101.2

Q ss_pred             ccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCc
Q 012367          219 QAHKGCIWTLKFSPD-------------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (465)
Q Consensus       219 ~~H~~~I~~l~fspd-------------g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (465)
                      ..|.|.|.-..+.-+             |.|+||||.||+|.|-.+-+.+..                            
T Consensus        55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~----------------------------  106 (846)
T KOG2066|consen   55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI----------------------------  106 (846)
T ss_pred             ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc----------------------------
Confidence            456666655555444             889999999999988776653221                            


Q ss_pred             eeEecCCceeeecCCcceeeeccccceEEEEecCC------CEEEEEeCCCeEEEEeCC---CCeEeEEecCCCceEEEE
Q 012367          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS------NYLLSCSMDKTVRMWQVG---CNQCLNVFDHHNYVTCVQ  356 (465)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~------~~l~s~s~DgtV~lWD~~---~~~~l~~~~h~~~V~~i~  356 (465)
                                       +.+ ....++.+++++|+      +.+++|+.-| +.++.-+   ....+..-...++|.++.
T Consensus       107 -----------------~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~  167 (846)
T KOG2066|consen  107 -----------------TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK  167 (846)
T ss_pred             -----------------eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence                             111 23467888999886      4899999998 7777532   122221224677999999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCCCCeEEecccC-CC------CeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RD------VISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       357 fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~------~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      |   .|+++|-++.+| |+|||+.+++.+..... ..      ....+.|.++. .|+.| ..-+|+|..++
T Consensus       168 W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  168 W---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             e---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence            9   689999998766 89999999887763321 12      23457787665 44554 45578888887

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=8.2e-05  Score=77.11  Aligned_cols=196  Identities=15%  Similarity=0.224  Sum_probs=138.5

Q ss_pred             cccccchhhhccCCCcEEEEEECCCC------------CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeE
Q 012367          209 FTALYTSQEIQAHKGCIWTLKFSPDG------------RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  276 (465)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~l~fspdg------------~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (465)
                      -..++..|.+.-|...|+.+.|.|-.            -.||++...|.|.+||+.....                    
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--------------------  101 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV--------------------  101 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh--------------------
Confidence            34567788899999999999998721            2688888899999999876422                    


Q ss_pred             EeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-----CEEEEEeCCCeEEEEeCCCCeEeEEec-CCC
Q 012367          277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN  350 (465)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-----~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~  350 (465)
                                               +..+..|..+|.+++|-+.     ..|++-....+|.+|+..+|+...... .+.
T Consensus       102 -------------------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~  156 (1062)
T KOG1912|consen  102 -------------------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE  156 (1062)
T ss_pred             -------------------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence                                     3445568888999999752     367777778899999999999988886 445


Q ss_pred             ceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-------CeEEe-cccCCC------------C-------------eEEE
Q 012367          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVD-WADVRD------------V-------------ISAI  397 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-------~~~~~-~~~~~~------------~-------------V~sv  397 (465)
                      ...|+.+.|.+.+.|..-+..|.|-+-+...       ++... ...|.+            .             .-.+
T Consensus       157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f  236 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF  236 (1062)
T ss_pred             ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence            6778999999999888888889888877632       22222 222222            0             1125


Q ss_pred             EEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccc
Q 012367          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDN  456 (465)
Q Consensus       398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~  456 (465)
                      +|+|.-+.++.......+.++|+.-..-. ..+.+..      +...-+++.|+++.|.
T Consensus       237 af~p~~rn~lfi~~prellv~dle~~~~l-~vvpier------~~akfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  237 AFSPHWRNILFITFPRELLVFDLEYECCL-AVVPIER------GGAKFVDVLPDPRRDA  288 (1062)
T ss_pred             hcChhhhceEEEEeccceEEEcchhhcee-EEEEecc------CCcceeEeccCCCcce
Confidence            78998888888888889999998754332 2222222      2334456667766655

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=4.1e-05  Score=74.72  Aligned_cols=224  Identities=18%  Similarity=0.145  Sum_probs=141.5

Q ss_pred             cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCC--ccc
Q 012367          193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGG--FGS  269 (465)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~--~~~  269 (465)
                      -++..|.|.++.    .....-...+.+|.+.|.+++.+.+|.+++|++. |..++++|+.+...........-+  ...
T Consensus        28 lDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w  103 (558)
T KOG0882|consen   28 LDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW  103 (558)
T ss_pred             cchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE
Confidence            344555553322    2233345667899999999999999999999888 999999999875544222111111  111


Q ss_pred             ccCCC----eEEeccCCCCceeEecCCceeeecCCcc-eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC----
Q 012367          270 NAKEG----KIKFGKKKSSHVPVVIPDEVFQIEESPL-QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----  339 (465)
Q Consensus       270 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~----  339 (465)
                      ....+    .+.+.........+.....    ...+. ..-.-|..+|.++.+++.+ ..+|....|.|.-|....    
T Consensus       104 v~skGd~~s~IAVs~~~sg~i~VvD~~~----d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  104 VTSKGDKISLIAVSLFKSGKIFVVDGFG----DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             ecCCCCeeeeEEeecccCCCcEEECCcC----CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence            11111    1222211122121111111    11122 2333499999999999864 677888889999998862    


Q ss_pred             --CeEeEEe----------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc------------------
Q 012367          340 --NQCLNVF----------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD------------------  389 (465)
Q Consensus       340 --~~~l~~~----------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~------------------  389 (465)
                        ......+          .......++.|+| ++..+.+-+.|.+||++++.+++++....                  
T Consensus       180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~  258 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH  258 (558)
T ss_pred             ccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence              1111112          2455788999999 99999999999999999999887542110                  


Q ss_pred             ---------------CC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          390 ---------------VR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       390 ---------------~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                                     |. ..-+.++|...|++|+-|+.=| |++.++.++...
T Consensus       259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence                           11 1245678899999999988776 678888877653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.11  E-value=0.00033  Score=69.58  Aligned_cols=97  Identities=9%  Similarity=0.133  Sum_probs=64.4

Q ss_pred             eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE--eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEE
Q 012367          331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV  408 (465)
Q Consensus       331 tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~s  408 (465)
                      .+.|+++....+.-.....++|...+|.| .++-|++.  -.+..+-++|++..  +.+......=+.+.|+|.++++++
T Consensus       256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~  332 (561)
T COG5354         256 NLYLLRITERSIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF  332 (561)
T ss_pred             eEEEEeecccccceeccccccceeeeecc-cCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence            34555554332222224577899999999 55544443  46889999999987  344444445566789999999888


Q ss_pred             EEc---CCcEEEEEecCCceeeeEe
Q 012367          409 GSI---TGTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       409 gs~---dG~v~iwd~~~~~~~~~~~  430 (465)
                      ++-   .|.+-+||..+..+....+
T Consensus       333 agF~nl~gni~i~~~~~rf~~~~~~  357 (561)
T COG5354         333 AGFDNLQGNIEIFDPAGRFKVAGAF  357 (561)
T ss_pred             ecCCccccceEEeccCCceEEEEEe
Confidence            765   4788999988765544333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.09  E-value=2.2e-06  Score=89.45  Aligned_cols=199  Identities=17%  Similarity=0.250  Sum_probs=124.0

Q ss_pred             cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc--cCCCeEEeccCCCC
Q 012367          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN--AKEGKIKFGKKKSS  284 (465)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  284 (465)
                      .-|+.+.....++.|+...+|++|+-+.++|+.|+..|.|+++++.++........+...+...  ...+...+.....+
T Consensus      1086 ~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1086 FIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             hhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence            3467777888999999999999999999999999999999999998875543332222211110  01111111000000


Q ss_pred             ceeEecCC-ceeee--cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-c----CCCceEEE
Q 012367          285 HVPVVIPD-EVFQI--EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-D----HHNYVTCV  355 (465)
Q Consensus       285 ~~~~~~~~-~~~~~--~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~----h~~~V~~i  355 (465)
                           .|. .+|..  ...+.+.+.+    -.++.|++. ..-+.|.....+.|||+.++..+.++ .    .+..-+++
T Consensus      1166 -----~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1166 -----SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             -----CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence                 000 12222  1234444432    356788764 23333444467899999999877663 2    22234788


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      .|+| +..+++   .||  .+||++..+.+.....-..--.-.|+|.|..++.-+     -|||+++-++
T Consensus      1237 ~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1237 HFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred             ccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHH
Confidence            9999 777766   355  689999877665333323334456999999998876     4899887655

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=3.4e-05  Score=80.24  Aligned_cols=148  Identities=18%  Similarity=0.273  Sum_probs=112.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ....|+|++++  +++||-|..+|.|++.+....                                              
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----------------------------------------------   69 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----------------------------------------------   69 (846)
T ss_pred             hhhHHHHHHhh--cceeeeccccceEEEEecCCc----------------------------------------------
Confidence            35678899986  669999999999999987642                                              


Q ss_pred             cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC----CCCEEEEEeCCCcEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRI  376 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~----~~~~l~sgs~Dg~I~i  376 (465)
                      + .....|...     -..+.+++|||.||+|.|-.+-+.+....+....++.+|+++|.    ..+.+++|+.-| +.+
T Consensus        70 ~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL  142 (846)
T KOG2066|consen   70 P-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL  142 (846)
T ss_pred             c-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEE
Confidence            1 111123222     11234999999999999999999999898988899999999992    256789999888 888


Q ss_pred             EeCC---CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          377 WGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       377 wd~~---~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +.-+   ....+......+.|.+++|.  |.++|=++.+| |++||+...+..
T Consensus       143 ~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  143 SERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL  192 (846)
T ss_pred             ehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence            7653   22333466778899999997  66888888777 699999876553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.04  E-value=0.0016  Score=61.30  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=101.4

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceee
Q 012367          227 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  305 (465)
Q Consensus       227 ~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (465)
                      ++.|.+ ++.++++--..+.|..|+..+.....                                              +
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----------------------------------------------~   37 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----------------------------------------------I   37 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----------------------------------------------E
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----------------------------------------------E
Confidence            567887 67777777778889999887643211                                              1


Q ss_pred             eccccceEEEEec-CCCEEEEEeCCCeEEEEeCCCCeEeEEec------CCCceEEEEEccCCCCEEEEEeCC-------
Q 012367          306 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID-------  371 (465)
Q Consensus       306 ~gh~~~V~~l~~s-~~~~l~s~s~DgtV~lWD~~~~~~l~~~~------h~~~V~~i~fsp~~~~~l~sgs~D-------  371 (465)
                      ... . ...+++. +++.|+.+..++. .++|..+++......      .....+.+++.| ++++.++....       
T Consensus        38 ~~~-~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~  113 (246)
T PF08450_consen   38 DLP-G-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID  113 (246)
T ss_dssp             ESS-S-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred             ecC-C-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence            111 1 5667777 6787877777554 555999886544442      234688999999 99988887654       


Q ss_pred             -CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCCce
Q 012367          372 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDL  425 (465)
Q Consensus       372 -g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~~~  425 (465)
                       |.|..++.. +++......-...+.++|+|+++.|+ +-+..+.|..|++.....
T Consensus       114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~  168 (246)
T PF08450_consen  114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG  168 (246)
T ss_dssp             SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred             ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccccc
Confidence             557777777 56555555556789999999999776 455688899999975443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.00074  Score=68.84  Aligned_cols=106  Identities=9%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             EEEecCCC-EEE-EEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---------CcEEEEeCC
Q 012367          314 DLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---------GKVRIWGVC  380 (465)
Q Consensus       314 ~l~~s~~~-~l~-s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---------g~I~iwd~~  380 (465)
                      ...|+|++ .|+ +....+  .|.+.|+.++...+.......  ...|+| ++++++..+..         ..|.+.|+.
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~  357 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTN  357 (419)
T ss_pred             ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence            44799986 444 333333  688888888776444332222  248999 88888776654         268888988


Q ss_pred             CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-Cc--EEEEEecCC
Q 012367          381 EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGN  423 (465)
Q Consensus       381 ~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G~--v~iwd~~~~  423 (465)
                      ++....+.... ......|+|||+.|+..+.. |.  +.+.++.+.
T Consensus       358 ~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        358 SDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            88766655432 33468899999988776653 33  555666554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00013  Score=70.44  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=43.9

Q ss_pred             cccccccccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeee
Q 012367          205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASC  258 (465)
Q Consensus       205 ~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~  258 (465)
                      +.++-..++..+.+.+|...|..|+|||..+ +|..++.+.+|+|.|+.+..+..
T Consensus       176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs  230 (463)
T KOG1645|consen  176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS  230 (463)
T ss_pred             EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee
Confidence            3444455666778889999999999999877 89999999999999999865443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.0037  Score=59.92  Aligned_cols=190  Identities=12%  Similarity=0.160  Sum_probs=115.6

Q ss_pred             EEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          226 WTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       226 ~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      .-++++++|++|+++.. -|.|.++-+...........                              .+......+-  
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~------------------------------~~~h~g~~p~--  139 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ------------------------------VVKHTGSGPH--  139 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee------------------------------eeecCCCCCC--
Confidence            78999999999998864 57888888765211100000                              0000000000  


Q ss_pred             eeccccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEE----ecCCCceEEEEEccCCCCEEEEEe-CCCcEEEE
Q 012367          305 LHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW  377 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~----~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw  377 (465)
                      .+.-...+....+.|++ +|+++.- --.|.+|++..|.....    +........|.|+| ++++..... .+++|-+|
T Consensus       140 ~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~  218 (346)
T COG2706         140 ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVL  218 (346)
T ss_pred             ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEE
Confidence            00011125567788987 6655543 24699999987764332    23556778999999 999877665 48999999


Q ss_pred             eCCC--CeEEec---------ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCC--ceeee-EeeecCcccccCCc
Q 012367          378 GVCE--KRVVDW---------ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKLE-KVDFHDRKKTSGNK  442 (465)
Q Consensus       378 d~~~--~~~~~~---------~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~--~~~~~-~~~~~~~~~~~~~~  442 (465)
                      ....  +++-.+         .....+..+|..+|||++|.++.. ...|-+|.+...  ++.+. ....++      ..
T Consensus       219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg------~~  292 (346)
T COG2706         219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG------QF  292 (346)
T ss_pred             EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC------cC
Confidence            9876  433222         123456788999999999999875 347888887644  44444 222233      22


Q ss_pred             eeeEEEeecCCc
Q 012367          443 ITGIQGRISKNY  454 (465)
Q Consensus       443 It~~~f~p~gs~  454 (465)
                      -.++.|.++|.+
T Consensus       293 PR~F~i~~~g~~  304 (346)
T COG2706         293 PRDFNINPSGRF  304 (346)
T ss_pred             CccceeCCCCCE
Confidence            345566666544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=8.4e-05  Score=74.34  Aligned_cols=138  Identities=18%  Similarity=0.265  Sum_probs=97.1

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-----------CcEEEEeCCC
Q 012367          313 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----------GKVRIWGVCE  381 (465)
Q Consensus       313 ~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-----------g~I~iwd~~~  381 (465)
                      +-+.|||-|..++.-.-.-|.+|--.+-..++.|.|.+ |.-+.|+| +.+||+|-+..           ..++|||+++
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            46789998844444445569999887777777887764 78899999 99999998642           5689999999


Q ss_pred             CeEEecccC---C-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccce
Q 012367          382 KRVVDWADV---R-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNF  457 (465)
Q Consensus       382 ~~~~~~~~~---~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~  457 (465)
                      |.+......   . ..-.-+.||.|++++|.-+.+ .|.||+...-.+       -.++.-....|.++.|+|.   +++
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l-------ld~Kslki~gIr~FswsP~---~~l  360 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML-------LDKKSLKISGIRDFSWSPT---SNL  360 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee-------ecccccCCccccCcccCCC---cce
Confidence            987652221   1 222347899999999988774 688998765222       1222223456888899998   455


Q ss_pred             eeeecC
Q 012367          458 RRFQTP  463 (465)
Q Consensus       458 ~~~~~p  463 (465)
                      .-+++|
T Consensus       361 lAYwtp  366 (698)
T KOG2314|consen  361 LAYWTP  366 (698)
T ss_pred             EEEEcc
Confidence            555554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.88  E-value=0.00024  Score=73.79  Aligned_cols=150  Identities=16%  Similarity=0.259  Sum_probs=114.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      -.++.|+|.| ++|-|+.. .|.+-|..+.                                             +.++.
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~---------------------------------------------q~iqs   50 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSL---------------------------------------------QLIQS   50 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEehhhh---------------------------------------------hhhhc
Confidence            6788999988 77777763 5666666542                                             34666


Q ss_pred             eeccccceEEEEecCCC-------------EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccC--CC-CEEEE
Q 012367          305 LHGHKGDVLDLAWSNSN-------------YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-NYFIS  367 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~-------------~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~--~~-~~l~s  367 (465)
                      +.-|...|+.+.|.|-+             .|+++...|.|.+||...+..+..+. |.++|..++|-|.  +. .+++.
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Lla  130 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLA  130 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEE
Confidence            77788999999997521             46677778999999999988888885 5668999998763  23 56777


Q ss_pred             EeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEec
Q 012367          368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~  421 (465)
                      -....+|.+|+..+|+... ....+....++.+.| |.+.++.-+..|.+.+-+..
T Consensus       131 Ih~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  131 IHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             ecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence            7778899999999988775 444556677799999 77888888888988877764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=8.5e-05  Score=72.60  Aligned_cols=190  Identities=16%  Similarity=0.201  Sum_probs=128.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      -|.+.|+.+.-+ -.+++.+|+.||.++.|.-.....                                          .
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------------------------------v   43 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------------------------------V   43 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------------------------------e
Confidence            488888887655 355999999999999997543110                                          0


Q ss_pred             CcceeeeccccceEEEEecCCCE-EEEEeC-CCeEEEEeCCCCeEeEEecCCCceEEEEE--ccCCC--CEEEEEeCCCc
Q 012367          300 SPLQELHGHKGDVLDLAWSNSNY-LLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDD--NYFISGSIDGK  373 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~-DgtV~lWD~~~~~~l~~~~h~~~V~~i~f--sp~~~--~~l~sgs~Dg~  373 (465)
                      .-+..+..|.+.|.+++.+-++. +.|.+. |+.++++|+.+-..+..+......-.+.|  +|.+.  .+.++.-.++.
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~  123 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK  123 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence            23556778999999999998874 556566 99999999987665544432222222222  33111  23333445789


Q ss_pred             EEEEeCCCCe--EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee---------ee-EeeecCcccccC
Q 012367          374 VRIWGVCEKR--VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---------LE-KVDFHDRKKTSG  440 (465)
Q Consensus       374 I~iwd~~~~~--~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~---------~~-~~~~~~~~~~~~  440 (465)
                      |.|+|-...-  ... ..-|..+|..+.+.|-+..+++....|.|..|.... .++         +. +-++.+ ..++-
T Consensus       124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~-f~K~K  201 (558)
T KOG0882|consen  124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYG-FPKAK  201 (558)
T ss_pred             cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhc-ccccc
Confidence            9999986532  222 445889999999999999999999999999999884 111         11 122222 22244


Q ss_pred             CceeeEEEeecCCc
Q 012367          441 NKITGIQGRISKNY  454 (465)
Q Consensus       441 ~~It~~~f~p~gs~  454 (465)
                      ...+++.|+|+|..
T Consensus       202 t~pts~Efsp~g~q  215 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQ  215 (558)
T ss_pred             cCccceEEccccCc
Confidence            67889999998755

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0012  Score=69.57  Aligned_cols=162  Identities=21%  Similarity=0.284  Sum_probs=110.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .|+|  |++.+..+|.|+.||.|.+.+-.-                                              +.++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~----------------------------------------------~~~~   58 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSSF----------------------------------------------QLIR   58 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecccc----------------------------------------------eeee
Confidence            4544  577888999999999887776331                                              2235


Q ss_pred             eeeccccc-eEEEEecCC-CEEEEEeCCCe-----EEEEeCCC------CeEe---EEecC-----CCceEEEEEccCCC
Q 012367          304 ELHGHKGD-VLDLAWSNS-NYLLSCSMDKT-----VRMWQVGC------NQCL---NVFDH-----HNYVTCVQFNPIDD  362 (465)
Q Consensus       304 ~~~gh~~~-V~~l~~s~~-~~l~s~s~Dgt-----V~lWD~~~------~~~l---~~~~h-----~~~V~~i~fsp~~~  362 (465)
                      .++.+... |..+...++ ++|++.+.|+.     |++|++..      .+|+   +.+.+     ..++.+++.+. +-
T Consensus        59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l  137 (933)
T KOG2114|consen   59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL  137 (933)
T ss_pred             hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence            56666666 444443344 58888888754     99999853      3455   44442     44688999998 88


Q ss_pred             CEEEEEeCCCcEEEEeCC-----CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          363 NYFISGSIDGKVRIWGVC-----EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~-----~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      ..+|.|-.+|.|..+.-.     ..+........++|+.+++..+++.++-......|.+|.+.+.......++.+|
T Consensus       138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G  214 (933)
T KOG2114|consen  138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG  214 (933)
T ss_pred             cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCC
Confidence            999999999999988531     122223455678999999999998854455566899999997662222354444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.80  E-value=0.0077  Score=56.04  Aligned_cols=182  Identities=13%  Similarity=0.079  Sum_probs=105.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCCeEEeccCCCCceeEecCCceeeecCCcceee-ecc--
Q 012367          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL-HGH--  308 (465)
Q Consensus       233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh--  308 (465)
                      ++.++++++.++.|..||..+++.............. ......+.+.........+....      ++.+... ...  
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t------G~~~W~~~~~~~~  108 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKT------GKVLWSIYLTSSP  108 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTT------SCEEEEEEE-SSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCC------cceeeeecccccc
Confidence            5667888899999999999998887766653332221 12222222222111111111111      1122221 111  


Q ss_pred             --c-cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCC-c----------e-EEEEEccCCCCEEEEEeCCCc
Q 012367          309 --K-GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-Y----------V-TCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       309 --~-~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~-~----------V-~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                        . .......+. ++.++.+..++.|..+|+.+|+.+..+.-.. .          + ..+.+.  ++ .++.++.++.
T Consensus       109 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~  184 (238)
T PF13360_consen  109 PAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGR  184 (238)
T ss_dssp             TCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSS
T ss_pred             ccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCe
Confidence              0 011112222 5678888889999999999999988874222 1          1 223332  34 6666666775


Q ss_pred             -EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          374 -VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       374 -I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                       +.+ |+.+++.+ |......+.. ...+++..|++++.+|.+..||+.+++...
T Consensus       185 ~~~~-d~~tg~~~-w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  185 VVAV-DLATGEKL-WSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEE-ETTTTEEE-EEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEE-ECCCCCEE-EEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence             555 99999866 4332233332 145677888888899999999999997753

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.73  E-value=0.013  Score=55.10  Aligned_cols=130  Identities=15%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             ccceEEEEecCCCE-EEEEeCC--------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-EEeCCCcEEEEe
Q 012367          309 KGDVLDLAWSNSNY-LLSCSMD--------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWG  378 (465)
Q Consensus       309 ~~~V~~l~~s~~~~-l~s~s~D--------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-sgs~Dg~I~iwd  378 (465)
                      ....+++++.++|. .++....        +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..++
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEe
Confidence            35678899999874 4444433        457777877 66655555556778999999 887654 667788899998


Q ss_pred             CCC--CeEE------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367          379 VCE--KRVV------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       379 ~~~--~~~~------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      +..  ..+.      .........-.+++.++|+..++....+.|.+++..+ ++ +..+.+..      ..+|++.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~~-~~~i~~p~------~~~t~~~f  232 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-KL-LREIELPV------PRPTNCAF  232 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-CE-EEEEE-SS------SSEEEEEE
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-cE-EEEEcCCC------CCEEEEEE
Confidence            853  2111      1222333578899999999888888899999999884 33 22343332      36889998

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.72  E-value=0.0013  Score=64.71  Aligned_cols=122  Identities=12%  Similarity=0.039  Sum_probs=85.3

Q ss_pred             CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC----------CCcEEEEeCCCCeEEecccCC--------
Q 012367          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVR--------  391 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~--------  391 (465)
                      ++|.+.|..+++.+..+.-...-..+ ++| +++.++.+..          +..|.+||..+.+.+.-....        
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            89999999999999998654444445 999 8777766655          789999999999887644332        


Q ss_pred             CCeEEEEEeeCCCEEEEEE-c-CCcEEEEEecCCceeeeEeeecC-cccccCCceeeEEEeecCCc
Q 012367          392 DVISAICYIPDGKGFIVGS-I-TGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs-~-dG~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~It~~~f~p~gs~  454 (465)
                      .....++++|||++|++.. . +..|.+.|+.+++...+ +...+ ........-+.+.++.+|+.
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccEEEeecCce
Confidence            2344899999999999877 3 68999999999877543 32222 22222233334455555544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>smart00320 WD40 WD40 repeats

Probab=97.67  E-value=6.4e-05  Score=47.07  Aligned_cols=36  Identities=39%  Similarity=0.939  Sum_probs=32.5

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  250 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd  250 (465)
                      ...+.+|...|+++.|++++.++++++.|+.|++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345668999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.63  E-value=0.005  Score=68.68  Aligned_cols=200  Identities=16%  Similarity=0.238  Sum_probs=114.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC---C---CcEEEEecCCceeeeeeecCCCC--cccccCCCeEEeccCC--CCc-eeEe
Q 012367          221 HKGCIWTLKFSPDGRYLASGGE---D---GVVRIWHVTSVAASCKSFTDDGG--FGSNAKEGKIKFGKKK--SSH-VPVV  289 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~---D---g~V~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~-~~~~  289 (465)
                      +...-..|+|-.||.|+|+.+.   .   ..||||+-+ +..........+-  ..+....+.+......  ... ...+
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4445668999999999998875   3   579999976 3332222221111  1111111111111100  011 1111


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe--EeEEe--cCCCceEEEEEccCCCCEE
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ--CLNVF--DHHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~--~l~~~--~h~~~V~~i~fsp~~~~~l  365 (465)
                      -.++.-.-  .-...+......|..|.|++++-+++.-....|.+|-..+.+  ....+  .....+..+.|+|.+...|
T Consensus       287 ErNGLrhg--eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  287 ERNGLRHG--EFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             ecCCcEee--eEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            11111000  000001234568999999998644433444459999998765  22233  3444566699999777878


Q ss_pred             EEEeCCCcEEEEeC----CCC---------eEE-----------------------ecccCCCCeEEEEEeeCCCEEEEE
Q 012367          366 ISGSIDGKVRIWGV----CEK---------RVV-----------------------DWADVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~----~~~---------~~~-----------------------~~~~~~~~V~sv~~spdg~~l~sg  409 (465)
                      .....+|.+.++++    ..+         .+.                       ........|.+++|++++..+++-
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl  444 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL  444 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence            88877677766544    111         110                       012245679999999999889999


Q ss_pred             EcCCcEEEEEecCC
Q 012367          410 SITGTCHFYKASGN  423 (465)
Q Consensus       410 s~dG~v~iwd~~~~  423 (465)
                      ..||.+.+|.....
T Consensus       445 ~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  445 TSDGSLSIYEWDLK  458 (928)
T ss_pred             ECCCCEEEEEecCC
Confidence            99999999996544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.59  E-value=0.0012  Score=67.17  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=74.3

Q ss_pred             ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--
Q 012367          307 GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--  383 (465)
Q Consensus       307 gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~--  383 (465)
                      .....|.+.+++|+ ..|+.|..||+|.+||...+..... ...-.++.++|+| ++.+|++|+.-|.+.+||+.-..  
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence            46788999999997 5999999999999999987744433 5556789999999 99999999999999999985322  


Q ss_pred             ------------EEe---cccCCCCeEEEEEeeCC
Q 012367          384 ------------VVD---WADVRDVISAICYIPDG  403 (465)
Q Consensus       384 ------------~~~---~~~~~~~V~sv~~spdg  403 (465)
                                  .+.   ...+...+..+.|.+..
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence                        111   23455667778888554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.55  E-value=0.01  Score=56.77  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=68.3

Q ss_pred             EeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCc-------EEEEeCCCC-eEE-----ec
Q 012367          326 CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGK-------VRIWGVCEK-RVV-----DW  387 (465)
Q Consensus       326 ~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~-------I~iwd~~~~-~~~-----~~  387 (465)
                      ..++-.+.+-|..+|+.+....     |...|..+++.+ ++..++..-..|.       |-+++.... +..     .+
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~  212 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW  212 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence            3445567777888888776642     666899999998 7776665544332       334433221 111     13


Q ss_pred             ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceee
Q 012367          388 ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL  427 (465)
Q Consensus       388 ~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~  427 (465)
                      ......+-+|+++++|..+++.+- -|.+.+||..++.+.-
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence            456788999999999988877665 6788999999887743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.55  E-value=0.017  Score=58.06  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc-cCCC-CeEEE
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA-DVRD-VISAI  397 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~-~V~sv  397 (465)
                      ++.++.++.++.+..||..+++.+........ .....   .+..++.++.+|.|..+|..+++.+... .... ...+.
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            46788888999999999999988777653322 12222   4567778888999999999998766422 2222 22222


Q ss_pred             EEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ..  .+..+++++.+|.++++|..++++..
T Consensus       317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       317 AV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            22  46689999999999999998887754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.54  E-value=0.0013  Score=69.65  Aligned_cols=133  Identities=15%  Similarity=0.166  Sum_probs=98.6

Q ss_pred             eEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC---------CCcEEEEeCCC
Q 012367          312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVCE  381 (465)
Q Consensus       312 V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~---------Dg~I~iwd~~~  381 (465)
                      |.=|. .++.++.+|...|+|.+-|..+.+.+++| .|.+.|..+..   .|+.|+++|.         |..|+|||+++
T Consensus       180 v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  180 VTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             eEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhh
Confidence            44444 34468889999999999999999999999 49999988776   7899999875         56689999999


Q ss_pred             CeEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCcee---eeEeeecCcccccCCceeeEEEeecCCc
Q 012367          382 KRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK---LEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       382 ~~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      .+.+.-........-+.|+|.- ..+++++..|.+.+-|..+-.-+   ...+..      .+..|+++.++++|..
T Consensus       256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------~~s~i~~fDiSsn~~a  326 (1118)
T KOG1275|consen  256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP------NGSGISAFDISSNGDA  326 (1118)
T ss_pred             hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc------CCCcceeEEecCCCce
Confidence            8777655544445667888854 57888999999999994432222   222222      2356999999988654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.0077  Score=60.76  Aligned_cols=222  Identities=16%  Similarity=0.271  Sum_probs=121.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCC-----------CcEEEEecCCceeeeeeecCCCCcccc-----cCCCeEEeccCCC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGED-----------GVVRIWHVTSVAASCKSFTDDGGFGSN-----AKEGKIKFGKKKS  283 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~D-----------g~V~iWd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  283 (465)
                      .|.+ |.-+.|||+.+||+|=|..           ..++|||+.++................     ..+... ++....
T Consensus       248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~~  325 (698)
T KOG2314|consen  248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMTG  325 (698)
T ss_pred             cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce-eEEecc
Confidence            4554 8889999999999997642           578999999987665544422211100     000000 000111


Q ss_pred             CceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEe-----CCCeEEEEeCCCCeEeEEecCCC-ceEEEE
Q 012367          284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-----MDKTVRMWQVGCNQCLNVFDHHN-YVTCVQ  356 (465)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-----~DgtV~lWD~~~~~~l~~~~h~~-~V~~i~  356 (465)
                      ..+.+.-.....-+..+++     ....|....|+|.. .|+-=+     .-..+.|-.+.+++.+++-...+ .=..+.
T Consensus       326 ~sisIyEtpsf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh  400 (698)
T KOG2314|consen  326 NSISIYETPSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH  400 (698)
T ss_pred             ceEEEEecCceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence            1122221122222222222     23567788899965 333211     12456777777777666654211 112344


Q ss_pred             EccCCCCEEEEE----------eCCCcEEEEeCCCCeE-EecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecC
Q 012367          357 FNPIDDNYFISG----------SIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASG  422 (465)
Q Consensus       357 fsp~~~~~l~sg----------s~Dg~I~iwd~~~~~~-~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~  422 (465)
                      |-. +|.||+.-          +.-..+-|+.++...+ +........|.+.+|-|.|..+++-+.   ..++.+|.+.+
T Consensus       401 WQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  401 WQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             ecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            544 66666532          2222356676665543 345667888999999999987766554   46899998885


Q ss_pred             Cceeee-EeeecCcccccCCceeeEEEeecCCcc
Q 012367          423 NDLKLE-KVDFHDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       423 ~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                      +..... ...+.      ...-+.++|+|-|.+-
T Consensus       480 ~~~~~~lVk~~d------k~~~N~vfwsPkG~fv  507 (698)
T KOG2314|consen  480 NIKKPSLVKELD------KKFANTVFWSPKGRFV  507 (698)
T ss_pred             CCCchhhhhhhc------ccccceEEEcCCCcEE
Confidence            332222 11111      1445678888887763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.51  E-value=0.019  Score=53.60  Aligned_cols=150  Identities=16%  Similarity=0.230  Sum_probs=93.7

Q ss_pred             EEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--------CCCceEEEEEccCC-----CCEEEEEeCCCcEEEEe
Q 012367          313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID-----DNYFISGSIDGKVRIWG  378 (465)
Q Consensus       313 ~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--------h~~~V~~i~fsp~~-----~~~l~sgs~Dg~I~iwd  378 (465)
                      ..++|+||+ +|+.+...|+|+++|+-.. .+..+.        ....|..+.|.+..     ...|+.-..+|.++=|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            568999986 7888888999999999743 333332        23467777776532     23566667788888777


Q ss_pred             CCCCe--------EEec-ccCCCCeEEEEEeeCCCEEEEEEc----CC-------cEEEEEecCCceeeeEe--------
Q 012367          379 VCEKR--------VVDW-ADVRDVISAICYIPDGKGFIVGSI----TG-------TCHFYKASGNDLKLEKV--------  430 (465)
Q Consensus       379 ~~~~~--------~~~~-~~~~~~V~sv~~spdg~~l~sgs~----dG-------~v~iwd~~~~~~~~~~~--------  430 (465)
                      +..+.        ...+ ..+...|+++.|+|..+.|++|+.    ++       -+..|.+-++..-+.+.        
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            63321        1112 234778999999999888888774    11       24567654332222111        


Q ss_pred             --------------eecCcccccCCceeeEEEeecCCcc-------ceeeeecC
Q 012367          431 --------------DFHDRKKTSGNKITGIQGRISKNYD-------NFRRFQTP  463 (465)
Q Consensus       431 --------------~~~~~~~~~~~~It~~~f~p~gs~d-------~~~~~~~p  463 (465)
                                    .+..++......|..+.++|+|+..       .+-+|..|
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                          1111112234678888999998763       36777777

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.50  E-value=0.025  Score=56.84  Aligned_cols=106  Identities=14%  Similarity=0.040  Sum_probs=71.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCc--------eEEEEEcc-CCCCEEEEEeCCCcEEEEeCCCCeEEecccC
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADV  390 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~--------V~~i~fsp-~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  390 (465)
                      ++.++.+..++.+..+|+.+|+.+........        +..+.-.| ..+..++.++.+|.++.||..+++.+.....
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~  269 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA  269 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence            35788888899999999999987765431110        00111111 1345777788899999999999877653332


Q ss_pred             CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       391 ~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .. ....  ..++..+++++.+|.++.+|..+++....
T Consensus       270 ~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~  304 (377)
T TIGR03300       270 SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWK  304 (377)
T ss_pred             CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence            22 1222  23567888889999999999998876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.47  E-value=0.0089  Score=48.17  Aligned_cols=101  Identities=24%  Similarity=0.303  Sum_probs=72.4

Q ss_pred             EEEEEECC---CC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          225 IWTLKFSP---DG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       225 I~~l~fsp---dg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      |++|++..   +| +.|+.||+|..||||+=...                                              
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------------------------------------------   35 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------------------------------------------   35 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------------------------------------------
Confidence            66777655   33 38999999999999986531                                              


Q ss_pred             cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCC---CEEEEEeCCCcEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVR  375 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~---~~l~sgs~Dg~I~  375 (465)
                       +.++. -++.|++++-...+.++.+..+|||-+|+-  ...+...+....++++++...++   .-|++|-.+|.|-
T Consensus        36 -~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   36 -VAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -EEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             22222 346788888877789999999999999976  33445555556688887765332   2688898888874

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.46  E-value=6.1e-05  Score=76.60  Aligned_cols=162  Identities=20%  Similarity=0.298  Sum_probs=104.4

Q ss_pred             ccCCCcEEEEEECCC-CCEEEEE----eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          219 QAHKGCIWTLKFSPD-GRYLASG----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       219 ~~H~~~I~~l~fspd-g~~LaSg----s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      .+|..+.++++|++- ...||.|    -.|..+.|||+.+.-....                                 .
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk---------------------------------e  145 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK---------------------------------E  145 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc---------------------------------c
Confidence            478889999999984 4567766    2366799999987422000                                 0


Q ss_pred             eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                      .+.     ...  +......+++|-.+ .++++|...+.+.++|++........-....|..+...|..++|+++-. ||
T Consensus       146 ~~~-----fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg  217 (783)
T KOG1008|consen  146 SPL-----FSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DG  217 (783)
T ss_pred             ccc-----ccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cC
Confidence            000     000  12233447778755 4778888888999999984432222224456778888888889998877 99


Q ss_pred             cEEEEeC-CC-CeEEeccc-----CCCCeEEEEEeeCCC-EEEEEEc-CCcEEEEEec
Q 012367          373 KVRIWGV-CE-KRVVDWAD-----VRDVISAICYIPDGK-GFIVGSI-TGTCHFYKAS  421 (465)
Q Consensus       373 ~I~iwd~-~~-~~~~~~~~-----~~~~V~sv~~spdg~-~l~sgs~-dG~v~iwd~~  421 (465)
                      .|.+||. +. ...+....     ....+..++|.|... .+++.+. .++|++||+.
T Consensus       218 ~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  218 DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            9999994 32 22222222     223499999999544 3444444 5899999986

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.46  E-value=0.011  Score=47.55  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=72.4

Q ss_pred             eEEEEecC---C--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          312 VLDLAWSN---S--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       312 V~~l~~s~---~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      |++|++.+   +  +.|+.||.|..||+|+-.  ..+..+...+.|++++-..  ...|+.+...|+|-+|+-... +-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence            56677653   3  489999999999999854  6788888888999998876  477999999999999986333 333


Q ss_pred             cccCCCCeEEEEEee-CC---CEEEEEEcCCcEE
Q 012367          387 WADVRDVISAICYIP-DG---KGFIVGSITGTCH  416 (465)
Q Consensus       387 ~~~~~~~V~sv~~sp-dg---~~l~sgs~dG~v~  416 (465)
                      ... ...++++++.. +|   .-|++|-.+|.|-
T Consensus        77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            222 23366665543 33   3689998899874

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.45  E-value=0.0062  Score=56.65  Aligned_cols=108  Identities=17%  Similarity=0.130  Sum_probs=77.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-ccCC----CC
Q 012367          319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----DV  393 (465)
Q Consensus       319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~----~~  393 (465)
                      .++.+++++.++.|..||..+|+.+..+.....+......  .+..++.++.++.|+.+|..++++... ....    ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            5678888899999999999999999888644432222221  456667777888999999999987754 2211    12


Q ss_pred             eEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ........++..++++..+|.+..+|+.++++...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence            23334444588999999999999999999987544

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.35  E-value=0.0031  Score=64.37  Aligned_cols=145  Identities=16%  Similarity=0.181  Sum_probs=70.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      ...-....|.++|+|++++.++ ||.-.|+.......                                           
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~-------------------------------------------   65 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN-------------------------------------------   65 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE-------------------------------------------
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc-------------------------------------------
Confidence            3444577999999999988854 56666766322111                                           


Q ss_pred             CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                             ...+.-...+|.+.+.+++-....+|.|+.--.....+.+.....+..|-.    |.+|+..+. +.|.+||.
T Consensus        66 -------k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw  133 (443)
T PF04053_consen   66 -------KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW  133 (443)
T ss_dssp             -------EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred             -------cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence                   012334456676666666666667777753222222333433333444432    555555543 36777777


Q ss_pred             CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .+++++....... |..|.|+++|.+++..+.+ .+.+++...
T Consensus       134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            7777776555443 6777777777777776644 555655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0005  Score=66.52  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=73.1

Q ss_pred             cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          301 PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      +...+.+|...|.+++|+|.  |++..++.+.+|+|.|+++..++..+.....+++++|.-.+.+++..|-..|.|.|||
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence            34466788899999999985  5899999999999999999999999987799999999997788999999999999999


Q ss_pred             CCCC
Q 012367          379 VCEK  382 (465)
Q Consensus       379 ~~~~  382 (465)
                      ++..
T Consensus       265 ~R~~  268 (463)
T KOG1645|consen  265 MRQP  268 (463)
T ss_pred             ccCC
Confidence            9764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00089  Score=68.37  Aligned_cols=79  Identities=18%  Similarity=0.289  Sum_probs=69.3

Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeE-EEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~-sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      ....|..+.|+| ...++|.+..+|.|.+.-+.-+++.++.-+...++ ++||.|||+.|++|-.||+|++.|+..+...
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            445688899999 99999999999999999999888888776666666 9999999999999999999999999987664


Q ss_pred             e
Q 012367          427 L  427 (465)
Q Consensus       427 ~  427 (465)
                      .
T Consensus        98 ~   98 (665)
T KOG4640|consen   98 V   98 (665)
T ss_pred             e
Confidence            3

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.22  E-value=0.035  Score=61.16  Aligned_cols=120  Identities=8%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             EEEEecCCC-EEEEE----eCC-CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe---CCCcEEEEeCCCC
Q 012367          313 LDLAWSNSN-YLLSC----SMD-KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEK  382 (465)
Q Consensus       313 ~~l~~s~~~-~l~s~----s~D-gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs---~Dg~I~iwd~~~~  382 (465)
                      +.|.|-.+| ++++.    -.+ +.|++||-. |..-..- ....-=.+++|-| .|..+++-.   .|+.|.+|....-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence            358888887 55542    234 799999987 3322111 1222345899999 888888753   3567999986543


Q ss_pred             e---EEe-cccCCCCeEEEEEeeCCCEEEE---EEcCCcEEEEEecCCceeee-EeeecC
Q 012367          383 R---VVD-WADVRDVISAICYIPDGKGFIV---GSITGTCHFYKASGNDLKLE-KVDFHD  434 (465)
Q Consensus       383 ~---~~~-~~~~~~~V~sv~~spdg~~l~s---gs~dG~v~iwd~~~~~~~~~-~~~~~~  434 (465)
                      +   ... +......|..++|+.++..|++   ......|++|-+.+...-++ .+.+..
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~  336 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ  336 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc
Confidence            2   222 3333334999999999999888   44455599999987776555 444433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.21  E-value=7.1e-05  Score=76.16  Aligned_cols=184  Identities=14%  Similarity=0.186  Sum_probs=117.9

Q ss_pred             CCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          222 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       222 ~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      ...+.|+++.-+..  .++.|..+|.|-+-.+....-.                                          
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------   93 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------   93 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc------------------------------------------
Confidence            44567777765443  7889999999988877652111                                          


Q ss_pred             CcceeeeccccceEEEEecCC--CEEEEEe----CCCeEEEEeCCCC--eEe--EEe--cCCCceEEEEEccCCCCEEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNS--NYLLSCS----MDKTVRMWQVGCN--QCL--NVF--DHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~--~~l~s~s----~DgtV~lWD~~~~--~~l--~~~--~h~~~V~~i~fsp~~~~~l~s  367 (465)
                       .-....+|....++++|++-  +.|++|-    .|..+.|||+.++  .+.  ..|  .......+++|-. +.+++++
T Consensus        94 -s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvla  171 (783)
T KOG1008|consen   94 -SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLA  171 (783)
T ss_pred             -cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhc
Confidence             01123467788999999973  4666552    2457999999876  221  112  1334566889986 8999999


Q ss_pred             EeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEe-cCCceeeeEeeecCcccccCCceee
Q 012367          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKA-SGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      |...+.+.++|++........-.+..+..+...| .+.++++-. ||.|-+||. ..-+-++.++ .+. ..+..+++..
T Consensus       172 Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~-~N~~~~~l~~  248 (783)
T KOG1008|consen  172 GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRN-ENKKPKQLFA  248 (783)
T ss_pred             ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH-hhC-CCCcccceee
Confidence            9999999999998544332222334566677788 666777655 999999994 3222222222 222 1222346888


Q ss_pred             EEEeecC
Q 012367          446 IQGRISK  452 (465)
Q Consensus       446 ~~f~p~g  452 (465)
                      ++++|..
T Consensus       249 ~aycPtr  255 (783)
T KOG1008|consen  249 LAYCPTR  255 (783)
T ss_pred             EEeccCC
Confidence            8888864

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0018  Score=66.30  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             ccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceE-EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367          309 KGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (465)
Q Consensus       309 ~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~-~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~  385 (465)
                      ...|.-+.|+|. .++|.+..+|.|.+..+. .+.+.++. +...|+ +++|.| ||+.++.|-.||+|++-|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            346778899997 589999999999999998 77788887 777777 999999 9999999999999999999988766


Q ss_pred             ec--ccCCCCeEEEEEee
Q 012367          386 DW--ADVRDVISAICYIP  401 (465)
Q Consensus       386 ~~--~~~~~~V~sv~~sp  401 (465)
                      ..  ......|..+-|.|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            53  44566778887763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.15  E-value=0.0056  Score=64.58  Aligned_cols=182  Identities=18%  Similarity=0.325  Sum_probs=119.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      +++++|+|..-.||.|=+-|.+.+|...+.+..                                             ..
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h---------------------------------------------tv   96 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH---------------------------------------------TV   96 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceee---------------------------------------------ee
Confidence            456999999889999999999999987753221                                             12


Q ss_pred             eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-Ce--EeEEecC--CCceE--EEEEcc-----------------
Q 012367          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQ--CLNVFDH--HNYVT--CVQFNP-----------------  359 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~--~l~~~~h--~~~V~--~i~fsp-----------------  359 (465)
                      ...|..+|..+.|+++| .++|+..-|.|.+|.... |+  ....+.|  ...++  |...+|                 
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe  176 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE  176 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence            23599999999999975 899999999999997642 11  0111111  11111  111111                 


Q ss_pred             -----------------------CCCCEEEEEeCCCcEEEEeCCCCe--------------------E--E---------
Q 012367          360 -----------------------IDDNYFISGSIDGKVRIWGVCEKR--------------------V--V---------  385 (465)
Q Consensus       360 -----------------------~~~~~l~sgs~Dg~I~iwd~~~~~--------------------~--~---------  385 (465)
                                             .++..|..++.+|+|+-.|-...+                    +  +         
T Consensus       177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~  256 (1416)
T KOG3617|consen  177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLI  256 (1416)
T ss_pred             hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEE
Confidence                                   145577777888888877743211                    0  0         


Q ss_pred             --------------ec---------------------------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          386 --------------DW---------------------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       386 --------------~~---------------------------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                                    ..                           ......++++||...+..|+.|+..|++.+|--.+..
T Consensus       257 ~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~  336 (1416)
T KOG3617|consen  257 FVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKG  336 (1416)
T ss_pred             EecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcc
Confidence                          00                           0012348999999999999999999999999755443


Q ss_pred             ee----eeEeeecCcccccCCceeeEEEeecC
Q 012367          425 LK----LEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       425 ~~----~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      ++    ...+.+++ +......|+.++|.|-.
T Consensus       337 f~g~p~~d~w~l~~-~~e~~g~I~~i~Wg~~k  367 (1416)
T KOG3617|consen  337 FQGDPTIDVWTLNG-KRESLGKISLIRWGPIK  367 (1416)
T ss_pred             ccCCCCcceEEecC-chhhccceEEEEecccc
Confidence            32    22566666 44456789999998843

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.13  E-value=0.057  Score=54.46  Aligned_cols=199  Identities=19%  Similarity=0.250  Sum_probs=104.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee-eeecCCC-----CcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDDG-----GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      .|+.|.|+++..-||.|-..|-|.||.+...+... .......     .+........+.......       +.. ..-
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~-------~~~-~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRA-------PPS-LKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------TT--SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhC-------Ccc-ccc
Confidence            58999999998899999999999999886532221 0000000     000000011111000000       000 000


Q ss_pred             cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---------CCCceEEEEEccC----CC--
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNPI----DD--  362 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---------h~~~V~~i~fsp~----~~--  362 (465)
                      .-.|...++...++|++++.++=|+++.|..+|.+.|.|++....+..-.         ...+|+++.|...    |+  
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            11345556667899999999988999999999999999999888776632         2347899988731    22  


Q ss_pred             -CEEEEEeCCCcEEEEeCCC---Ce----EEec-ccCCCCeEEEE-EeeC-----------------C---CEEEEEEcC
Q 012367          363 -NYFISGSIDGKVRIWGVCE---KR----VVDW-ADVRDVISAIC-YIPD-----------------G---KGFIVGSIT  412 (465)
Q Consensus       363 -~~l~sgs~Dg~I~iwd~~~---~~----~~~~-~~~~~~V~sv~-~spd-----------------g---~~l~sgs~d  412 (465)
                       -.+++|...|.+.+|.+.-   +.    .... ..+.+.|..+. ++.+                 |   ..+++...+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             3688899999999998741   21    1122 24556666655 3222                 1   234555557


Q ss_pred             CcEEEEEecCCceeeeEe
Q 012367          413 GTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       413 G~v~iwd~~~~~~~~~~~  430 (465)
                      ..++++...+.+...+.+
T Consensus       235 ~~irv~~~~~~k~~~K~~  252 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSF  252 (395)
T ss_dssp             SEEEEE-TT---EEEEE-
T ss_pred             cceEEEeCCCCcccceee
Confidence            789999988776644433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.12  E-value=0.0017  Score=40.12  Aligned_cols=37  Identities=38%  Similarity=0.764  Sum_probs=31.4

Q ss_pred             eEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       341 ~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      +++..+ .|...|.+++|+| .+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            445555 4778999999999 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.11  E-value=0.08  Score=49.76  Aligned_cols=199  Identities=17%  Similarity=0.194  Sum_probs=95.7

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCC-CC---cccccCCCeEEeccCCCCcee-Ee
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDD-GG---FGSNAKEGKIKFGKKKSSHVP-VV  289 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~-~~  289 (465)
                      +.+.+-...|..|+|+|+.. ++|.....+.|...+.. ++......... ..   +.. ...+...+......... +.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITY-LGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEE-ECCCEEEEEEcCCCcEEEEE
Confidence            45566667799999999755 77777788888888865 44443332211 11   111 11122222222111111 11


Q ss_pred             cCC--ceeeecC-Cc--ceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCC---CeEeEEe---c------CCCc
Q 012367          290 IPD--EVFQIEE-SP--LQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGC---NQCLNVF---D------HHNY  351 (465)
Q Consensus       290 ~~~--~~~~~~~-~~--~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~---~~~l~~~---~------h~~~  351 (465)
                      ...  ....... ..  +.....++..+-.++|.+. +.|+.+-......||.+..   ...+...   .      .-..
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            111  0000000 00  0011235567899999985 5666666666667776643   2222221   1      3345


Q ss_pred             eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCC----------CCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR----------DVISAICYIPDGKGFIVGSITGTCHFY  418 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~----------~~V~sv~~spdg~~l~sgs~dG~v~iw  418 (465)
                      +..++++|..+++++.......|.++| ..|+++......          ...-.|+|.++|+..++ +.-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            789999998888999999999999999 556555422211          24778999999965555 454444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.09  E-value=0.043  Score=55.33  Aligned_cols=196  Identities=14%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .-++...++|++++.|.-| ++|.|.++|.+.|.|+.....+.......                               
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------------  127 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------------  127 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------------------
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc-------------------------------
Confidence            4455669999999998666 99999999999999998765544321111                               


Q ss_pred             eecCCcceeeeccccceEEEEec-----CCC----EEEEEeCCCeEEEEeCC--C-Ce----EeEEe-cCCCceEEEE-E
Q 012367          296 QIEESPLQELHGHKGDVLDLAWS-----NSN----YLLSCSMDKTVRMWQVG--C-NQ----CLNVF-DHHNYVTCVQ-F  357 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s-----~~~----~l~s~s~DgtV~lWD~~--~-~~----~l~~~-~h~~~V~~i~-f  357 (465)
                            ...-......|+++.|.     .++    .++.|...|.+.+|.+-  . +.    ..... .+.+.|..|. |
T Consensus       128 ------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i  201 (395)
T PF08596_consen  128 ------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPI  201 (395)
T ss_dssp             --------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEE
T ss_pred             ------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEE
Confidence                  00001133456677775     233    68888999999999764  1 21    11222 3556666555 3


Q ss_pred             ccCC--------------------CCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEe-----eCCCEEEEEEc
Q 012367          358 NPID--------------------DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----PDGKGFIVGSI  411 (465)
Q Consensus       358 sp~~--------------------~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~s-----pdg~~l~sgs~  411 (465)
                      +...                    ..+++.++ +..+||+...+.+... ..........+++-     ..+..|++-..
T Consensus       202 ~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~  280 (395)
T PF08596_consen  202 NADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN  280 (395)
T ss_dssp             ETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred             ECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC
Confidence            2211                    11444444 7889999998776554 22222334445553     35678888899


Q ss_pred             CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          412 TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       412 dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +|.|++|.+..-+.... ..+.  .....+.+....|+++|.
T Consensus       281 ~G~i~i~SLP~Lkei~~-~~l~--~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  281 NGSIRIYSLPSLKEIKS-VSLP--PPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             TSEEEEEETTT--EEEE-EE-S--S---HHHHTT-EE-TTS-
T ss_pred             CCcEEEEECCCchHhhc-ccCC--CccccccccccEECCCCC
Confidence            99999999987555433 2222  111223444555555543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.011  Score=62.52  Aligned_cols=179  Identities=13%  Similarity=0.177  Sum_probs=110.2

Q ss_pred             ccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCc-----EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCc
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGV-----VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~-----V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (465)
                      ++..+.+++|...|...-+.-++ .+|++.++|+.     |+||+++..+....                          
T Consensus        54 ~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--------------------------  107 (933)
T KOG2114|consen   54 FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--------------------------  107 (933)
T ss_pred             ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--------------------------
Confidence            33347788888884444444444 68999998875     89999876321100                          


Q ss_pred             eeEecCCceeeecCCccee--eeccccceEEEEecCC-CEEEEEeCCCeEEEEeC--CCCe-EeEEe--cCCCceEEEEE
Q 012367          286 VPVVIPDEVFQIEESPLQE--LHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQV--GCNQ-CLNVF--DHHNYVTCVQF  357 (465)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~--~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~--~~~~-~l~~~--~h~~~V~~i~f  357 (465)
                           |.-++..   .+.+  ......++.+++.+.+ ..++.|-.+|.|..+.-  ...+ ....+  ....+|+.+++
T Consensus       108 -----P~c~~~~---ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  108 -----PQCLYEH---RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             -----cceeeee---eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence                 0000000   0000  0113467788888876 68889999999998842  1111 11222  35569999999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .. ++.-++-......|.+|.+....  ......|...++|..+++....+++++. ..+.+|+..+.+.+
T Consensus       180 ~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  180 RS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPC  248 (933)
T ss_pred             ec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCccee
Confidence            88 66653333345679999987554  3335667778899998876655666554 46788888765553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.07  E-value=0.0009  Score=70.27  Aligned_cols=106  Identities=12%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             EEEecCC-CEEEEEeC----CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c
Q 012367          314 DLAWSNS-NYLLSCSM----DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W  387 (465)
Q Consensus       314 ~l~~s~~-~~l~s~s~----DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~  387 (465)
                      -+.|+|. .+++.++.    .|.|.||- .+|.+.+....+-.++++||+| ..-.|+.|-.-|.+.+|...+.+..+ .
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~   97 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVV   97 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeec
Confidence            3568886 46655543    47787773 4455554444445577899999 88889999999999999998877665 5


Q ss_pred             ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       388 ~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ..|...|..+.|+|+|..++++..-|.+.+|...
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5689999999999999999999999999999876

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.02  E-value=0.18  Score=51.02  Aligned_cols=103  Identities=8%  Similarity=0.028  Sum_probs=71.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CC-CCeEEE
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR-DVISAI  397 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~-~~V~sv  397 (465)
                      ++.++.++.++.+..+|+.+|+.+........ ..+..   .+..++.++.++.|..+|..+++.+-... .. ....+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            56788888899999999999988776643322 12222   45677778889999999999987654221 11 112222


Q ss_pred             EEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ..  .+..|++++.+|.++++|..+++....
T Consensus       332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            22  255788999999999999999876543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.0041  Score=64.44  Aligned_cols=103  Identities=12%  Similarity=0.184  Sum_probs=80.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE-----Ee--ccc
Q 012367          319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-----VD--WAD  389 (465)
Q Consensus       319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~-----~~--~~~  389 (465)
                      .+.+++.|+.-|.|.+|+-..+.....-.  ....+..+..++ +..++|.|+..|.|.++-+..+..     ++  -..
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~  122 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS  122 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence            34689999999999999987765443322  344555667788 888999999999999998865321     11  223


Q ss_pred             CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       390 ~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      |...|++++|++++..+++|...|.|.+-.++.
T Consensus       123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            788999999999999999999999999888776

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.72  E-value=0.077  Score=57.54  Aligned_cols=126  Identities=18%  Similarity=0.269  Sum_probs=87.0

Q ss_pred             Cceeee---cCCcceeeeccccc-eEEEEecC------CCEEEEEeCCCeEEEEeCCCCe--EeE----EecCCCceEEE
Q 012367          292 DEVFQI---EESPLQELHGHKGD-VLDLAWSN------SNYLLSCSMDKTVRMWQVGCNQ--CLN----VFDHHNYVTCV  355 (465)
Q Consensus       292 ~~~~~~---~~~~~~~~~gh~~~-V~~l~~s~------~~~l~s~s~DgtV~lWD~~~~~--~l~----~~~h~~~V~~i  355 (465)
                      ..++.+   .++.+.++..|... |.+++-..      +...+.|-.+..+..||.+-..  ++.    .+.......|+
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            445544   35667777777644 66665431      1256778888999999998532  332    22344567777


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      +-..  .-+||.|+.+|.||+||-...+.-+ +.+...+|..|+.+.||++|++.+.. .+.++++
T Consensus       584 aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  584 ATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             EecC--CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            7764  5689999999999999964433333 55678999999999999998887655 5566665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.71  E-value=0.071  Score=55.91  Aligned_cols=120  Identities=15%  Similarity=0.118  Sum_probs=80.3

Q ss_pred             cccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeE------------eEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC------------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       308 h~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~------------l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      -......+.++|++  .++++..+.+|.|.|+.+.+.            .....-.......+|.+ +++.+.|-..|..
T Consensus       319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsq  397 (635)
T PRK02888        319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQ  397 (635)
T ss_pred             CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecce
Confidence            34566788999987  455666699999999987542            33333444456788988 8888999999999


Q ss_pred             EEEEeCCC----------CeEEecccCCCCeEEE------EEeeCCCEEEEEEc---CC----------cEEEEEecCCc
Q 012367          374 VRIWGVCE----------KRVVDWADVRDVISAI------CYIPDGKGFIVGSI---TG----------TCHFYKASGND  424 (465)
Q Consensus       374 I~iwd~~~----------~~~~~~~~~~~~V~sv------~~spdg~~l~sgs~---dG----------~v~iwd~~~~~  424 (465)
                      |..|++..          ..++......-.+-.+      .-.|||++|++...   |.          +-.+.|+++.+
T Consensus       398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdk  477 (635)
T PRK02888        398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDK  477 (635)
T ss_pred             eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCe
Confidence            99999865          3344422222222222      23789999988753   22          33577777776


Q ss_pred             eeee
Q 012367          425 LKLE  428 (465)
Q Consensus       425 ~~~~  428 (465)
                      +++.
T Consensus       478 M~lv  481 (635)
T PRK02888        478 MKLV  481 (635)
T ss_pred             eEEE
Confidence            6554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.61  E-value=0.26  Score=47.37  Aligned_cols=182  Identities=12%  Similarity=0.133  Sum_probs=113.1

Q ss_pred             EEEEECC-CCCEEEEEeCCCc-EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          226 WTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       226 ~~l~fsp-dg~~LaSgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      ..++.+| .+..+|.+-.-|+ ..+||..++......                                     ...+-+
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------------------------------~a~~gR   50 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------------------------------WAPPGR   50 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------------------------------cCCCCC
Confidence            3678888 5567777777665 567888776543322                                     123456


Q ss_pred             eeeccccceEEEEecCCC-EEEEEeC-----CCeEEEEeCC-CCeEeEEec-CCCceEEEEEccCCCCEEEEEe------
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSM-----DKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------  369 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~-----DgtV~lWD~~-~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs------  369 (465)
                      .|.||      -.|++++ +|++.-.     .|.|-|||.. +-+.+..|. |.-....+.+.| ++..|+.+.      
T Consensus        51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Th  123 (305)
T PF07433_consen   51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETH  123 (305)
T ss_pred             EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccC
Confidence            78888      5689987 5555433     4789999998 566777774 444556778899 887766652      


Q ss_pred             ------------CCCcEEEEeCCCCeEEe---c--ccCCCCeEEEEEeeCCCEEEEEEcCCc-------EEEEEecCCce
Q 012367          370 ------------IDGKVRIWGVCEKRVVD---W--ADVRDVISAICYIPDGKGFIVGSITGT-------CHFYKASGNDL  425 (465)
Q Consensus       370 ------------~Dg~I~iwd~~~~~~~~---~--~~~~~~V~sv~~spdg~~l~sgs~dG~-------v~iwd~~~~~~  425 (465)
                                  .+..+...|..++.++.   +  ..|...|..+++.++|..++..=..|-       +-+++.... +
T Consensus       124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~  202 (305)
T PF07433_consen  124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-L  202 (305)
T ss_pred             cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-c
Confidence                        12345556777787765   3  347778999999999977666554442       223322221 2


Q ss_pred             eeeEeeecCcc-cccCCceeeEEEeecCCc
Q 012367          426 KLEKVDFHDRK-KTSGNKITGIQGRISKNY  454 (465)
Q Consensus       426 ~~~~~~~~~~~-~~~~~~It~~~f~p~gs~  454 (465)
                      ..  +...... ..-.+.|-++.++.++..
T Consensus       203 ~~--~~~p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  203 RL--LPAPEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             ee--ccCChHHHHhhCCceEEEEEeCCCCE
Confidence            11  1111111 122367888888877643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.60  E-value=0.15  Score=50.14  Aligned_cols=110  Identities=16%  Similarity=0.213  Sum_probs=75.8

Q ss_pred             cccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-EeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC--CC
Q 012367          308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EK  382 (465)
Q Consensus       308 h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~--~~  382 (465)
                      ..++|.+++--. ++|+.+. .+.|.+|++...+ ....-.  ....++++...   +++++.|..-..|.++...  ..
T Consensus        87 ~~g~V~ai~~~~-~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSFN-GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEET-TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhhC-CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence            467899988764 4444443 4889999998777 544433  44477777764   5799999988888877443  33


Q ss_pred             eEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          383 RVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       383 ~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ++..  .......++++.+-++++.++++..+|.+.++....
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            3333  233456789999997778999999999999998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.56  E-value=0.27  Score=49.81  Aligned_cols=185  Identities=10%  Similarity=0.062  Sum_probs=99.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccCCCCceeEecC---CceeeecCC-cceeeecc
Q 012367          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKKKSSHVPVVIP---DEVFQIEES-PLQELHGH  308 (465)
Q Consensus       234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~gh  308 (465)
                      +..++.++.+|.+..+|..+++............... .....+.+... .........   ..+|..... +.....+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECC-CCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            4467778889999999998887766554332211111 11122222211 111111111   112222110 00001111


Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCc--------eEEEEEcc-CCCCEEEEEeCCCcEEEEeC
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~--------V~~i~fsp-~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      ..++    .. ++.++.++.++.+..+|..+|+.+..+....+        ...+.-+| ..+..++.++.++.+..+|.
T Consensus       199 ~sP~----v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        199 SAPA----TA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             CCCE----EE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence            1111    11 35677788899999999999987766532111        11111122 13456667778999999999


Q ss_pred             CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      .+++.+....... ...+  ..++..+++++.+|.+..+|..+++...
T Consensus       274 ~tG~~~W~~~~~~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W  318 (394)
T PRK11138        274 RSGQIVWKREYGS-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELW  318 (394)
T ss_pred             CCCCEEEeecCCC-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            9998764332221 1122  2346688888899999999998887644

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.40  E-value=0.13  Score=47.52  Aligned_cols=106  Identities=11%  Similarity=0.017  Sum_probs=82.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEE
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICY  399 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~  399 (465)
                      .+++.||..+.+.--|..+|..+..---...+.+-+.-  -+++++.|+..|.+++.+..++.... +......=.....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            47888999999999999999988877666666665554  47889999999999999999996554 3333222233456


Q ss_pred             eeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          400 IPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       400 spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .+++..+..|+.||+.+..|..+..-.++
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccceEEe
Confidence            78999999999999999999887665554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.37  E-value=0.04  Score=59.71  Aligned_cols=123  Identities=16%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             EEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEcc------CCCCEEEEEeCCCcEEEEeCCCC--eEEec----ccCCC
Q 012367          325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP------IDDNYFISGSIDGKVRIWGVCEK--RVVDW----ADVRD  392 (465)
Q Consensus       325 s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp------~~~~~l~sgs~Dg~I~iwd~~~~--~~~~~----~~~~~  392 (465)
                      .......|+-.|+..|+.+..+..+..+.-..|.|      .+..-.+.|-.++.+..||.|-.  +++..    .....
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            33456789999999999999997444333334444      12334566777889999999753  34431    12445


Q ss_pred             CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367          393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       393 ~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                      ..+|++-+.+| +||+|+.+|.||+||--+ +.      .......-+.+|+++..+.+|.|-
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~------AKT~lp~lG~pI~~iDvt~DGkwi  633 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR------AKTALPGLGDPIIGIDVTADGKWI  633 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccc-hh------hhhcCCCCCCCeeEEEecCCCcEE
Confidence            67788777777 899999999999999432 11      111111236899999999998873

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.30  E-value=0.21  Score=50.95  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             EEEecCCC--EEEEEeCCCe--EEEEeCCCCeEeEEecCCC-ceEEEEEccCCCCEEEEEeC-CCc--EEEEeCCCCeEE
Q 012367          314 DLAWSNSN--YLLSCSMDKT--VRMWQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSI-DGK--VRIWGVCEKRVV  385 (465)
Q Consensus       314 ~l~~s~~~--~l~s~s~Dgt--V~lWD~~~~~~l~~~~h~~-~V~~i~fsp~~~~~l~sgs~-Dg~--I~iwd~~~~~~~  385 (465)
                      ..+|+|++  ++++...|+.  |.+.|+..+...+ +.+.. .-+.=.|+| +|++++-.+. .|.  |.+.+...+...
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            45789986  5556677775  5666887766433 43332 223567899 8888776654 343  666677776654


Q ss_pred             ecccCCCCeEEEEEeeCCCEEEEEEcC-Cc--EEEEEecCCc
Q 012367          386 DWADVRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGND  424 (465)
Q Consensus       386 ~~~~~~~~V~sv~~spdg~~l~sgs~d-G~--v~iwd~~~~~  424 (465)
                      ........-..-.|+|||+.|+..+.. |.  |.++|+.++.
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            433322222277899999998887753 44  5566665444

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.26  E-value=0.19  Score=52.74  Aligned_cols=94  Identities=13%  Similarity=0.085  Sum_probs=73.6

Q ss_pred             CCCeEEEEeCCC-----CeEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCe------------EEeccc
Q 012367          328 MDKTVRMWQVGC-----NQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKR------------VVDWAD  389 (465)
Q Consensus       328 ~DgtV~lWD~~~-----~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~------------~~~~~~  389 (465)
                      .+++|.+.|..+     ...+..+.-......+.++| |++++++++ .+.+|.|.|+.+.+            ++....
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            367899999998     46677777888889999999 888776654 58999999998744            233333


Q ss_pred             CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       390 ~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ........+|.++|+...+-..|..|-.|++..
T Consensus       373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            344556788999999888888899999999875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.12  E-value=0.0066  Score=64.39  Aligned_cols=123  Identities=14%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             CcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC--cEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG--KVR  375 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg--~I~  375 (465)
                      ++.+.+..|+...+|++|+.+ ++|+.|+..|.|+++++.+|...... .|...|+-+.-+. ++...++.+.-.  -..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence            456677889999999999964 79999999999999999999887777 5999999999888 787777665443  467


Q ss_pred             EEeCCC-CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          376 IWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       376 iwd~~~-~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +|++.. +....   .-..-.++.|+..-+.-+.|+.-....+||+.++...
T Consensus      1171 LW~~~s~~~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             HhccccccCccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            999864 22221   1223467888877666777777778899999987653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.10  E-value=0.35  Score=46.09  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             ceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeE---------------EecCCCceEEEE-EccCCCCEEEEEeCCCc
Q 012367          311 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGK  373 (465)
Q Consensus       311 ~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~---------------~~~h~~~V~~i~-fsp~~~~~l~sgs~Dg~  373 (465)
                      .|..+...+. +.|+.- .|+++.++++..-....               .+.....+...+ -....+...+.....++
T Consensus        37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            3888888876 444443 45999999986543333               222333444444 11224444444555679


Q ss_pred             EEEEeCCCC-----eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          374 VRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       374 I~iwd~~~~-----~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      |.+|.....     ....-......+.+++|.  ++.+++|..++ ..+.|+.++..
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence            999887652     344445567889999999  55788887665 66888885544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=1.1  Score=45.17  Aligned_cols=115  Identities=20%  Similarity=0.207  Sum_probs=82.5

Q ss_pred             ceEEEEecCCC-EEEEE-e--CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE-EeCCCcEEEEeCCCCeEE
Q 012367          311 DVLDLAWSNSN-YLLSC-S--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVV  385 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~-s--~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s-gs~Dg~I~iwd~~~~~~~  385 (465)
                      ....+++++++ .+..+ .  .+++|.+.|..++..+....-...-..+++.| ++..++. -..++.|.+.|..+..+.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence            44578888875 44433 3  37999999999999888864433338999999 7775544 447899999998877666


Q ss_pred             e-----cccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCcee
Q 012367          386 D-----WADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLK  426 (465)
Q Consensus       386 ~-----~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~  426 (465)
                      .     ..........+.+.|+|..+.+....   +.+...|..++...
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence            3     23344556779999999977665554   58888888876654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.06  E-value=0.022  Score=38.51  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      .....|..++|+|....||.|+.+|.|.+|.++..
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence            34567999999999999999999999999998543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.01  E-value=1.7  Score=44.34  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=27.8

Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +.+..++.||+|+++|.-+.+|.+.+...+-.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            57999999999999999999999988876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.90  E-value=0.021  Score=59.31  Aligned_cols=104  Identities=11%  Similarity=0.128  Sum_probs=77.4

Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ++..|.--++.. .+.|++.|+.-|.+++|+..++.......  ....+...+.+++..++|+|+..|.|.+|-+.. .+
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-EL  109 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cC
Confidence            444444444555 78999999999999999998877665433  566777888999999999999999999999887 34


Q ss_pred             eeeEeeecCcccccCCceeeEEEeecCC
Q 012367          426 KLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +...+-+..--+++...||.+.|++++.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~  137 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGM  137 (726)
T ss_pred             CCcceeeccccccCCceEEEEEeccccc
Confidence            4443322222344778999999999863

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.026  Score=61.34  Aligned_cols=98  Identities=16%  Similarity=0.257  Sum_probs=73.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeE--eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCC---e
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDV---I  394 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~--l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~---V  394 (465)
                      ..++.|+..|.|...|+...-+  .+-.....+|++++|+. ++.+++.|-.+|.|.+||+..+++.+ +..+..+   |
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            4688888889999999876422  12223567999999999 99999999999999999999987766 4444444   4


Q ss_pred             EEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          395 SAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       395 ~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ..+.+..++..++++...|.  +|.+.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            44455566777888887886  67765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.83  E-value=0.031  Score=37.80  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT  252 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~  252 (465)
                      ...|.+++|+|...+||.|..||.|.|+.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=0.71  Score=47.04  Aligned_cols=119  Identities=16%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             CCcceeeeccccceEEEEecCCC--------EEEEEeCCCeEEEEeCCCCe--EeEEec-----CCCceEEEEEccCCCC
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN--------YLLSCSMDKTVRMWQVGCNQ--CLNVFD-----HHNYVTCVQFNPIDDN  363 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~--------~l~s~s~DgtV~lWD~~~~~--~l~~~~-----h~~~V~~i~fsp~~~~  363 (465)
                      ++.+.++.-|.. |.-+.+.|+.        .-+.|-.|..|.-||.+-..  .+..-+     ......|.+-.  ..-
T Consensus       366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG  442 (644)
T KOG2395|consen  366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESG  442 (644)
T ss_pred             ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCc
Confidence            445555555544 6667777653        23456678889999987322  222222     22334455443  566


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      +++.||.+|.||+||....+.-+ +.+...+|..|..+.||++|++.+. ..+.+-++.
T Consensus       443 ~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~  500 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL  500 (644)
T ss_pred             eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence            89999999999999974433333 6778899999999999999877654 455566654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.64  E-value=3  Score=42.47  Aligned_cols=55  Identities=5%  Similarity=0.070  Sum_probs=39.6

Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCC
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIPDG  403 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg  403 (465)
                      ..+++..++++| +++++|.-..+|.+.|....-.+....  .+.......+.|.-+.
T Consensus       215 ~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  215 SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            346899999999 999999999999999987655544432  2223556677776553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=0.19  Score=55.35  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             ceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeE--------eEE----ecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          311 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC--------LNV----FDHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       311 ~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~--------l~~----~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      .|..+...+|.   .++..+.+-.|..||+++-..        ++.    +.....+.++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            34444444543   455556666899999865321        111    123446789999996677788888899999


Q ss_pred             EEeCCCC-eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367          376 IWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       376 iwd~~~~-~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      +..+... ..+........+++++|+|.|+.+++|-..|++.-|.......    ...++.......+|.++.|..
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik----~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK----SEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee----ecccCCCcCCCcceeEEEEec
Confidence            9887543 3333456778899999999999999999999999887653211    111222222246777877663

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.45  E-value=0.25  Score=50.41  Aligned_cols=118  Identities=17%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             cccceEEEEecCCC-EE--EEE-eCC-CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE-EeCCCc--EEEEeC
Q 012367          308 HKGDVLDLAWSNSN-YL--LSC-SMD-KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VRIWGV  379 (465)
Q Consensus       308 h~~~V~~l~~s~~~-~l--~s~-s~D-gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s-gs~Dg~--I~iwd~  379 (465)
                      -...+..-+|+|++ .+  ++- ... ..+.++|+.+++..........-..-+|+| +++.++- ...||.  |.+.|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEEEcC
Confidence            33456667788875 21  122 222 469999999988766666555556779999 7766654 445664  666788


Q ss_pred             CCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCc--EEEEEecCCcee
Q 012367          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLK  426 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~--v~iwd~~~~~~~  426 (465)
                      .++....+....+.-+.-.|+|||+.++-.+. .|.  |.++++.++...
T Consensus       270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            88776665555555557889999998877765 454  555566665543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.41  E-value=0.96  Score=42.53  Aligned_cols=147  Identities=12%  Similarity=0.191  Sum_probs=86.2

Q ss_pred             eeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          304 ELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      .+.+-...+..|+|+|+ + +++.....+.|...+. +|+.++.+.  ..+....|++.. ++.|+++--.++.+.++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence            44566667999999986 5 5556667788888887 478888874  335678899876 7777776656899999988


Q ss_pred             CCC--e--E-----Ee--cc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC--CceeeeEeeecC--cccccCCce
Q 012367          380 CEK--R--V-----VD--WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHD--RKKTSGNKI  443 (465)
Q Consensus       380 ~~~--~--~-----~~--~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~--~~~~~~~~~~~~--~~~~~~~~I  443 (465)
                      ...  .  .     +.  +. .++..+-.++|.|.++.|+++-...-..+|.+..  ....+.......  ........+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            321  1  1     11  11 2445689999999999988888887888888875  222222111111  122344678


Q ss_pred             eeEEEeecC
Q 012367          444 TGIQGRISK  452 (465)
Q Consensus       444 t~~~f~p~g  452 (465)
                      .++.+.|..
T Consensus       174 S~l~~~p~t  182 (248)
T PF06977_consen  174 SGLSYDPRT  182 (248)
T ss_dssp             -EEEEETTT
T ss_pred             cceEEcCCC
Confidence            888888763

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=2.4  Score=42.78  Aligned_cols=156  Identities=16%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             cEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          224 CIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      .-..++++|+++.+..+..   +++|.+.|-.+........                                       
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~---------------------------------------  157 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP---------------------------------------  157 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe---------------------------------------
Confidence            3457899999987666655   5777777766543322110                                       


Q ss_pred             cceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE-----EecCCCceEEEEEccCCCCEEEEEeCC--
Q 012367          301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-----VFDHHNYVTCVQFNPIDDNYFISGSID--  371 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~-----~~~h~~~V~~i~fsp~~~~~l~sgs~D--  371 (465)
                           .|- .+ ..+++.|++  .+++-..+++|.+.|.......+     ...-......+.++| ++.++......  
T Consensus       158 -----vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~  229 (381)
T COG3391         158 -----VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSG  229 (381)
T ss_pred             -----cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCC
Confidence                 011 22 678899876  34444578999999987766653     123334556788999 88766555443  


Q ss_pred             -CcEEEEeCCCCeEEecc-cCCC-CeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCcee
Q 012367          372 -GKVRIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK  426 (465)
Q Consensus       372 -g~I~iwd~~~~~~~~~~-~~~~-~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~  426 (465)
                       +.+.+.|..++.+.... .... ....+..+|+|+.+.+... .+.+.+.|..+..+.
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence             58999999998877642 2222 5778999999999988855 488888888876554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=0.28  Score=49.86  Aligned_cols=134  Identities=14%  Similarity=0.207  Sum_probs=89.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC-------EEEEEeCCCcEEEEeCCCCe--EEecc----
Q 012367          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDWA----  388 (465)
Q Consensus       322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~-------~l~sgs~Dg~I~iwd~~~~~--~~~~~----  388 (465)
                      +|.++..-..++-.|+..|+.+........|+-+.+.| +..       --+.|-.|..|.-||.+-..  .+.+.    
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            45566666778888999999999998666688888888 432       22446668889999987422  22222    


Q ss_pred             -cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc-----cc-eeeee
Q 012367          389 -DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY-----DN-FRRFQ  461 (465)
Q Consensus       389 -~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~-----d~-~~~~~  461 (465)
                       .......|++-..+| ++++|+.+|.|++||-....-   +..++    .-+..|+.+..+.+|.+     ++ +.+..
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A---KTAlP----gLG~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA---KTALP----GLGDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh---hhccc----ccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence             123445666666666 899999999999999733211   11111    13578999998888765     33 45555


Q ss_pred             cCC
Q 012367          462 TPY  464 (465)
Q Consensus       462 ~p~  464 (465)
                      +++
T Consensus       499 t~~  501 (644)
T KOG2395|consen  499 TLI  501 (644)
T ss_pred             Eec
Confidence            654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.08  E-value=1.8  Score=40.28  Aligned_cols=99  Identities=12%  Similarity=0.059  Sum_probs=68.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEE-EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCC-CeEE
Q 012367          319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV-QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISA  396 (465)
Q Consensus       319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i-~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~V~s  396 (465)
                      -+++++.|...|.+++.+..+|.....|...+.|.+- +..+ ++..+..|+.|+..+..|.++...+......+ ...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence            3567999999999999999999888888765555443 3445 89999999999999999999877665333222 2333


Q ss_pred             EEEeeCCCEEEEEEcCCcEEEE
Q 012367          397 ICYIPDGKGFIVGSITGTCHFY  418 (465)
Q Consensus       397 v~~spdg~~l~sgs~dG~v~iw  418 (465)
                      -+..|-...|.++...|.+.--
T Consensus       141 P~i~~g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen  141 PVIAPGDGSLYAAITAGAVLAV  162 (354)
T ss_pred             ceecCCCceEEEEeccceEEEE
Confidence            4555533344555555554433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.06  E-value=0.064  Score=48.70  Aligned_cols=102  Identities=11%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CC-CCeEE
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR-DVISA  396 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~-~~V~s  396 (465)
                      ..++.|+.+|.|.+|...... ....+ .....|.+..-.-.++.+..+++.||.||.|++.-.+.+...+ |. ..+..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            479999999999999886211 11111 1222333333222255689999999999999998888776544 44 45666


Q ss_pred             EEEeeCCCEEEEE--EcCCcEEEEEecC
Q 012367          397 ICYIPDGKGFIVG--SITGTCHFYKASG  422 (465)
Q Consensus       397 v~~spdg~~l~sg--s~dG~v~iwd~~~  422 (465)
                      +..+..++.++.+  |.|..++.|++..
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchhh
Confidence            6666667777777  7788888888763

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.05  E-value=0.78  Score=44.97  Aligned_cols=115  Identities=9%  Similarity=0.073  Sum_probs=71.5

Q ss_pred             CeEEEEeCCCC-----e--EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-EEecccCCCCeEEEEEee
Q 012367          330 KTVRMWQVGCN-----Q--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP  401 (465)
Q Consensus       330 gtV~lWD~~~~-----~--~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~V~sv~~sp  401 (465)
                      |.|.++++...     +  .+......++|++++-.  .+. ++.+. ++.|.+|++.... +.....+...+..++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999999884     2  23334578899999875  344 44444 5899999998777 665444333334444444


Q ss_pred             CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       402 dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      .+.++++|.....+.++..+.....+..+.-..    ....++++.|.+++
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~----~~~~v~~~~~l~d~  184 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDY----QPRWVTAAEFLVDE  184 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES----S-BEEEEEEEE-SS
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEecC----CCccEEEEEEecCC
Confidence            467999999999999887765433333322111    23567777777655

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.05  E-value=0.8  Score=45.89  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCC-----e---EeEEec-----CCCceEEEEEccCCCCEEEEEeCC------
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----Q---CLNVFD-----HHNYVTCVQFNPIDDNYFISGSID------  371 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~-----~---~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~D------  371 (465)
                      ....|++.+++ |+.+......++.|....     +   .+..+.     +......++|.| ++.+.++-+..      
T Consensus        73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT  150 (367)
T ss_pred             CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence            45678888888 555555554445565321     1   122232     234578899999 88876655521      


Q ss_pred             -------------CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE
Q 012367          372 -------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       372 -------------g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs  410 (465)
                                   +.|.-++..++....+.........++|+|+|+.+++-.
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                         345555655555444333344567899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.95  E-value=0.89  Score=48.47  Aligned_cols=105  Identities=10%  Similarity=0.071  Sum_probs=60.7

Q ss_pred             eEEEEecCC-CEEEEEeC------------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE--
Q 012367          312 VLDLAWSNS-NYLLSCSM------------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI--  376 (465)
Q Consensus       312 V~~l~~s~~-~~l~s~s~------------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i--  376 (465)
                      ...-.|+|+ +.|.+.+.            .+.+.+.++..+....  .....|..+.|+| ||..++... ++.|.+  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            455677776 34444432            2233333444433322  3356799999999 999887766 577776  


Q ss_pred             -EeCCCCe--E---Eec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          377 -WGVCEKR--V---VDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       377 -wd~~~~~--~---~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                       -....+.  +   ..+ ......+.++.|.+++.. +++..++.-.+|.+.
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence             3333443  1   111 223344688999999985 466665555555543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.90  E-value=0.72  Score=51.34  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             cceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC----CC---
Q 012367          310 GDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CE---  381 (465)
Q Consensus       310 ~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~----~~---  381 (465)
                      +.|.++.|..+ +.++.+..+|.|.+-|..+....-.-...+.|.+++|+| |+..++....++++.+-+-    -.   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence            68889998865 577888888999999888775544445677899999999 9999988888787776432    11   


Q ss_pred             --------CeEEe---------ccc---------------------CCCCeEEEEEeeCCCEEEEEE-----cCCcEEEE
Q 012367          382 --------KRVVD---------WAD---------------------VRDVISAICYIPDGKGFIVGS-----ITGTCHFY  418 (465)
Q Consensus       382 --------~~~~~---------~~~---------------------~~~~V~sv~~spdg~~l~sgs-----~dG~v~iw  418 (465)
                              ++.+.         +.+                     ..+.=++|+|--||+++++..     ....|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                    11110         110                     111234599999999999843     33789999


Q ss_pred             EecCCceeee---EeeecC--cccccCCceeeEEEeecCC
Q 012367          419 KASGNDLKLE---KVDFHD--RKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       419 d~~~~~~~~~---~~~~~~--~~~~~~~~It~~~f~p~gs  453 (465)
                      |.. +.+...   ....+.  .-+.++..|..+|-.++.+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~  266 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS  266 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence            987 333221   111111  1122456677777666554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.88  E-value=1.7  Score=46.73  Aligned_cols=109  Identities=12%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             ceEEEEecC---CCEEEEEeCCCeEEEEeCCC-------C-------------eEeEEecCCCceEEEEEc--cCCCCEE
Q 012367          311 DVLDLAWSN---SNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNYF  365 (465)
Q Consensus       311 ~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~-------~-------------~~l~~~~h~~~V~~i~fs--p~~~~~l  365 (465)
                      .|+-|....   ...|+.|..||.|.+|.+++       .             ++...+.....++.++++  . ..++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence            455555443   34899999999999996521       0             122334566789999998  6 78899


Q ss_pred             EEEeCCCcEEEEeCCC--CeEEe--cccCCCCeEEEEEeeCC---C---EEEEEEcCCcEEEEEe
Q 012367          366 ISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA  420 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~--~~~~~--~~~~~~~V~sv~~spdg---~---~l~sgs~dG~v~iwd~  420 (465)
                      |+++....|.||-+..  .+...  ...+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999888888886643  22221  23467789999998754   2   6788889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.67  E-value=0.14  Score=46.56  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=34.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      .+..++..|+.|+.|++.-++.+....++..      -  ++..+++.+.|+.|.+|++....
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------~--~~e~~ivv~sd~~i~~a~~S~d~  169 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------E--SGEELIVVGSDEFLKIADTSHDR  169 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeeccccC------C--CcceeEEecCCceEEeeccccch
Confidence            3788999999999999988877766643321      2  23344444445555555554443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.48  E-value=1.6  Score=45.63  Aligned_cols=102  Identities=9%  Similarity=0.029  Sum_probs=66.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE------------------eCCCcEEEEeCCCCe
Q 012367          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG------------------SIDGKVRIWGVCEKR  383 (465)
Q Consensus       322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg------------------s~Dg~I~iwd~~~~~  383 (465)
                      .++.++.+|.+...|..+|+.+..+....  ..++..|   ..++.+                  ..+|.|.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            57788889999999999999888764321  1123333   222221                  235788888998888


Q ss_pred             EEecccCC---------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          384 VVDWADVR---------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       384 ~~~~~~~~---------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .+-.....         .....-.....+..|++|+.||.++.+|..++++...
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~  431 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK  431 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence            76533322         1111111122567899999999999999999987655

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.40  E-value=0.65  Score=43.77  Aligned_cols=69  Identities=26%  Similarity=0.349  Sum_probs=48.2

Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      ..++|-+|+.+..++-..+|.-..+...+||..++.++......+   +.-.-+....+++.+.+|.|.+|.
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEecCCceEEecc
Confidence            346788899887455555666667778899999999887544332   112334556788889999999884

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.40  E-value=0.16  Score=50.58  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=62.8

Q ss_pred             CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccC------------------
Q 012367          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV------------------  390 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~------------------  390 (465)
                      .+.+.|||+.+++..........+....|+| ++++++-.. ++.|.+++..++....+...                  
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            3679999999987665554567889999999 899998886 68899999988766543221                  


Q ss_pred             CCCeEEEEEeeCCCEEEEEEcC-CcEEEEEe
Q 012367          391 RDVISAICYIPDGKGFIVGSIT-GTCHFYKA  420 (465)
Q Consensus       391 ~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~  420 (465)
                      -+.-.++-|+|||+.|+....| ..|..+.+
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            1224678899999998887653 44444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.21  E-value=5.8  Score=38.48  Aligned_cols=148  Identities=15%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      .+.|..+.-+++|+++|.++.-....-|+-....-                                             
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w---------------------------------------------  178 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW---------------------------------------------  178 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----------------------------------------------
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccc---------------------------------------------
Confidence            47789999999999998887766666776442100                                             


Q ss_pred             ceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeC-CCCeEeEE--e--cCCC-ceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCLNV--F--DHHN-YVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~-~~~~~l~~--~--~h~~-~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      ...-..-...|..|.|.|++.|......|.|+.=+. ........  .  .... .+..++|.+ +....++|+ .|.+.
T Consensus       179 ~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  179 QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL  256 (302)
T ss_dssp             EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE
T ss_pred             eEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE
Confidence            000112346789999999886666668899988872 22222111  1  1223 489999998 777777776 45443


Q ss_pred             EEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367          376 IWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFY  418 (465)
Q Consensus       376 iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw  418 (465)
                      + ....++--.    .......+..|.|.++.+.++.| .+|.+--|
T Consensus       257 ~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  257 V-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             E-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             E-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            3 334443222    22345678899998877777665 67776544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.90  E-value=2.5  Score=40.18  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-------------
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-------------  386 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-------------  386 (465)
                      ++.|+.|..+| +.++++..........+...|..+...| +-+.+++-+ |+.++++++..-....             
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            45788888888 9999994444444444444599999999 777777665 6999999986533222             


Q ss_pred             --cccCCCCeEEEE--EeeCCCEEEEEEcCCcEEEEEecCCce----eeeEeeecCcccccCCceeeEEEe
Q 012367          387 --WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       387 --~~~~~~~V~sv~--~spdg~~l~sgs~dG~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                        .......+..++  -.+.+...++.....+|.+|.......    ...++.+..       .+.+++|.
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~-------~~~~i~~~  147 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD-------PPSSIAFL  147 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC-------CcEEEEEe
Confidence              112233455555  122333444444555999999887422    333444443       56666665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.89  E-value=1.3  Score=45.54  Aligned_cols=110  Identities=12%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCC-----------eEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----------QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~-----------~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      +|..+.|++++.+++-..+.++.+++....           .....+. ....|.+.+|.- +  .|+-.... .|+-  
T Consensus       146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkY--  219 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKY--  219 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEE--
T ss_pred             CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEE--
Confidence            488999999864443334557778775433           0222332 367889999964 3  44433333 6665  


Q ss_pred             CCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       379 ~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +..|....+.....++.-+.+.|..+.+.....++.|..+.+....+.
T Consensus       220 l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~  267 (443)
T PF04053_consen  220 LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELE  267 (443)
T ss_dssp             EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred             EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence            667777666666778888899998889999999999999987754443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.81  E-value=1.9  Score=44.67  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             ccccceEEEEecCC-----CEEEEEeCCCeEEEEeCC-----CCeEeEEe----cCCCc--eEEEEEccCCCCEEEEEeC
Q 012367          307 GHKGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVG-----CNQCLNVF----DHHNY--VTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       307 gh~~~V~~l~~s~~-----~~l~s~s~DgtV~lWD~~-----~~~~l~~~----~h~~~--V~~i~fsp~~~~~l~sgs~  370 (465)
                      |.-..|..+.|.|-     .-|++.-..+.|.||.+.     +++.+...    ...-+  -..+.|+| ....|+.-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            44567889999973     267788888999999984     22222221    11222  24567999 7777766554


Q ss_pred             CCcEEEEeCC--CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-CcEEEEEec
Q 012367          371 DGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKAS  421 (465)
Q Consensus       371 Dg~I~iwd~~--~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~~  421 (465)
                      ...=.+++++  +.++..-....+-|.|.||.+||+.|+++-.. =.-++||-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4444555654  33444444677889999999999988776443 223567644

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.61  E-value=4.6  Score=40.98  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             ceEEEEecCCC-EEE-EEeCCC----eEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC-----------
Q 012367          311 DVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG-----------  372 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~-s~s~Dg----tV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg-----------  372 (465)
                      .+..+.++|++ +++ +.+..|    +|+++|+.+++.+... ... .-..+.|.+ +++.|+-...+.           
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence            34467788876 443 434444    5999999999876543 222 123399999 766665554433           


Q ss_pred             cEEEEeCCCCe---EEeccc-CCC-CeEEEEEeeCCCEEEEEEcC----CcEEEEEecCC
Q 012367          373 KVRIWGVCEKR---VVDWAD-VRD-VISAICYIPDGKGFIVGSIT----GTCHFYKASGN  423 (465)
Q Consensus       373 ~I~iwd~~~~~---~~~~~~-~~~-~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~  423 (465)
                      .|+.|.+-+..   .+.+.. ... ....+..++|+++|+.....    ..+.+.++...
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            37888886543   122222 222 36788999999998775543    34677777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.39  E-value=8.5  Score=37.70  Aligned_cols=107  Identities=15%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEe--EEec-----------CCCceEEEEEccCCCCEEEEEeC--CC-------cEEEEe
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCL--NVFD-----------HHNYVTCVQFNPIDDNYFISGSI--DG-------KVRIWG  378 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l--~~~~-----------h~~~V~~i~fsp~~~~~l~sgs~--Dg-------~I~iwd  378 (465)
                      +.++--+..|.|+--|+......  ..+.           -.+.-.-+++++..+++++.-..  ++       .|-++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            45666778888888887655421  2221           01112346777734444443221  11       377788


Q ss_pred             CCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEEecCCceee
Q 012367          379 VCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYKASGNDLKL  427 (465)
Q Consensus       379 ~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd~~~~~~~~  427 (465)
                      +.+++.+........+.+|..+.+.+ .|++.+ .+|.+.+||..++++.-
T Consensus       276 ~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  276 LKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             TTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             CCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            99998887666666788999998876 555544 47999999999987753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.36  E-value=0.33  Score=53.28  Aligned_cols=69  Identities=23%  Similarity=0.420  Sum_probs=50.1

Q ss_pred             cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEE---EEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC---VQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~---i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      -.++|++++|+.+| .++.|-.+|.|.+||+..++.++.+. |..+++.   +.+.. ++..++++...|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence            45799999999887 67788889999999999999888884 4443333   33333 4456777777775  5544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.34  E-value=7.7  Score=37.02  Aligned_cols=199  Identities=13%  Similarity=0.139  Sum_probs=110.7

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+.+.|-+..|.++.|+|+.+.|.+......-.||=..+++.......                                
T Consensus        78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL--------------------------------  125 (316)
T COG3204          78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL--------------------------------  125 (316)
T ss_pred             ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc--------------------------------
Confidence            344667777799999999999888887777777775555544332211                                


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE----------eEEecC-CCceEEEEEccCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----------LNVFDH-HNYVTCVQFNPIDD  362 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~----------l~~~~h-~~~V~~i~fsp~~~  362 (465)
                                 .+ -.+.-.|.|..+| ++++--.++++.++.+..+..          +....+ +.....++|.| ..
T Consensus       126 -----------~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~  192 (316)
T COG3204         126 -----------TG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VD  192 (316)
T ss_pred             -----------cc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CC
Confidence                       11 1222345555444 444555566666666544321          111223 45678999999 55


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe-EEe---cccC-------CCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367          363 NYFISGSIDGKVRIWGVCEKR-VVD---WADV-------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~-~~~---~~~~-------~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~~~~~~  430 (465)
                      ..|..+=.-.-+.||.+.... ...   ...+       -..|.++.|++. +..++.+..++.+.-.|..+.-  ...+
T Consensus       193 ~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~--~~~l  270 (316)
T COG3204         193 HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV--IELL  270 (316)
T ss_pred             ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe--eeeE
Confidence            555555566667777665332 111   1111       134778889874 4555666667877778877664  3344


Q ss_pred             eecCcccc---cCCceeeEEEeecCCccceeeeecC
Q 012367          431 DFHDRKKT---SGNKITGIQGRISKNYDNFRRFQTP  463 (465)
Q Consensus       431 ~~~~~~~~---~~~~It~~~f~p~gs~d~~~~~~~p  463 (465)
                      .+.+....   ...+-.|+..-+   .+++-++..|
T Consensus       271 sL~~g~~gL~~dipqaEGiamDd---~g~lYIvSEP  303 (316)
T COG3204         271 SLTKGNHGLSSDIPQAEGIAMDD---DGNLYIVSEP  303 (316)
T ss_pred             EeccCCCCCcccCCCcceeEECC---CCCEEEEecC
Confidence            44333222   233444444433   3344444444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.30  E-value=0.27  Score=32.31  Aligned_cols=31  Identities=35%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             CcEEEEEECCCC---CEEEEEeCCCcEEEEecCC
Q 012367          223 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS  253 (465)
Q Consensus       223 ~~I~~l~fspdg---~~LaSgs~Dg~V~iWd~~~  253 (465)
                      |+|++++|||..   .+||-+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.19  E-value=3.9  Score=34.24  Aligned_cols=103  Identities=12%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             EEEEEeCCCeEEEEeCC--------CCeEeEEecCCCceEEEEEccC----CCCEEEEEeCCCcEEEEeCCCCeEEeccc
Q 012367          322 YLLSCSMDKTVRMWQVG--------CNQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEKRVVDWAD  389 (465)
Q Consensus       322 ~l~s~s~DgtV~lWD~~--------~~~~l~~~~h~~~V~~i~fsp~----~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  389 (465)
                      .|++++.-+.|.|++..        ....++.+.-...|++|+-.|.    ....|+.|+ ...|..||+....-+.+..
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke   90 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE   90 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence            67788888999999875        3345677778888999876553    355677766 5679999999888777788


Q ss_pred             CCCCeEEEEEeeCC---CEEEEEEcCCcEEEEEecCCce
Q 012367          390 VRDVISAICYIPDG---KGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       390 ~~~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ..+.|+++.+-.-+   .-++..+.+..|.-||..+...
T Consensus        91 ~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   91 VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            88889998885421   2344444455666666665544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.02  E-value=4.2  Score=42.47  Aligned_cols=105  Identities=15%  Similarity=0.163  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEeEEecCCCc------eE-EEEEccCCCCEEEEEe---------CCCcEEEEeCCCCeE
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV  384 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~------V~-~i~fsp~~~~~l~sgs---------~Dg~I~iwd~~~~~~  384 (465)
                      +.++.++.++.|.-+|..+|+.+..+.....      +. ...+   .+..++.++         .++.|..+|..+++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            6788888999999999999999988864332      11 1222   224455553         367899999999886


Q ss_pred             EecccCC-C--------------------Ce-EEEEEeeCCCEEEEEEcCC------------------cEEEEEecCCc
Q 012367          385 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND  424 (465)
Q Consensus       385 ~~~~~~~-~--------------------~V-~sv~~spdg~~l~sgs~dG------------------~v~iwd~~~~~  424 (465)
                      +-..... .                    .| .+.++.+.+..+++++.++                  .+.-+|+.+++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            6422111 0                    01 1345555667888888665                  78899999988


Q ss_pred             eeee
Q 012367          425 LKLE  428 (465)
Q Consensus       425 ~~~~  428 (465)
                      ....
T Consensus       268 ~~W~  271 (488)
T cd00216         268 VKWF  271 (488)
T ss_pred             EEEE
Confidence            8655

The alignment model contains an 8-bladed beta-propeller.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.82  E-value=2.9  Score=44.54  Aligned_cols=105  Identities=11%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCCCCeEeEEe--cCCCceEEEEEcc-CCCCEEEEEeCCCcEEEEeCC-----C-C-
Q 012367          314 DLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIWGVC-----E-K-  382 (465)
Q Consensus       314 ~l~~s~~~~l~s~s-~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp-~~~~~l~sgs~Dg~I~iwd~~-----~-~-  382 (465)
                      -+.-+.-+.++... ...++.|||.+.+......  ...+.|.++.|.. .+++.+++.|..+.|.++--.     . + 
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33333334444333 3457999999988754433  4578999998853 178889999999999998542     1 1 


Q ss_pred             -----eEEecccCC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          383 -----RVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       383 -----~~~~~~~~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                           +.+....++ .+|.+.+|.++|..+ +|+ ...+.|+|-
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~s-GNqlfv~dk  155 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGS-GNQLFVFDK  155 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEE-EEe-CCEEEEECC
Confidence                 112234444 679999999999544 443 345677763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.78  E-value=5.6  Score=36.67  Aligned_cols=97  Identities=11%  Similarity=0.152  Sum_probs=63.3

Q ss_pred             EEEEecCCC--EEEEEeCCCeEEEEe--CCCCeE-----eEEecC----C-CceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          313 LDLAWSNSN--YLLSCSMDKTVRMWQ--VGCNQC-----LNVFDH----H-NYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       313 ~~l~~s~~~--~l~s~s~DgtV~lWD--~~~~~~-----l~~~~h----~-~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      +.++|+.+.  +.++-+.+-+|.-||  ..+|..     +..+..    . -..-.++... +|+++++.-..++|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            467787553  666778888888888  445432     222221    1 1122334454 889999999999999999


Q ss_pred             CCCCeEEe-cccCCCCeEEEEEeeC-CCEEEEEE
Q 012367          379 VCEKRVVD-WADVRDVISAICYIPD-GKGFIVGS  410 (465)
Q Consensus       379 ~~~~~~~~-~~~~~~~V~sv~~spd-g~~l~sgs  410 (465)
                      ..+++++. +.-....|+++||--- -..+++.+
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            99998775 4445778999999732 23444433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.76  E-value=10  Score=36.91  Aligned_cols=112  Identities=13%  Similarity=0.205  Sum_probs=68.9

Q ss_pred             ceEEEEecCCCEEEEEeCC----------CeEEEEeCC-CCeEeEEec-CCCceEEEEEccCCCCEEEEEeC-CCcEEEE
Q 012367          311 DVLDLAWSNSNYLLSCSMD----------KTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIW  377 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~D----------gtV~lWD~~-~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iw  377 (465)
                      ..+++...|+|.+..+...          ..-.||-+. .+..++.+. +-..-+.|+|+| +++.++..-. .+.|.-|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEE
Confidence            4456677777755555444          112344444 455555553 355667899999 8866665544 4778888


Q ss_pred             eCCC--Ce------EEecccCCCCeEEEEEeeCCCEEEEEEcCC-cEEEEEecCC
Q 012367          378 GVCE--KR------VVDWADVRDVISAICYIPDGKGFIVGSITG-TCHFYKASGN  423 (465)
Q Consensus       378 d~~~--~~------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG-~v~iwd~~~~  423 (465)
                      ++..  +.      .+......+..-.++...+|.+-+++-..| .|.+|+..+.
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~  245 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK  245 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc
Confidence            7752  11      122333456667788888888776555554 8999999843

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.71  E-value=9.1  Score=36.17  Aligned_cols=134  Identities=9%  Similarity=0.060  Sum_probs=81.2

Q ss_pred             cceEEEEecCCC-EEEEEeCCC--eEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          310 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                      .-...+.|..++ ++-|.+.-|  .|+.+|+.+++.+....-..  .-..++..  ++.++.-.-.++...+||..+-+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            345678885555 556777766  79999999999877664322  33444444  345555566789999999998877


Q ss_pred             EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       385 ~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      +........=..++  .||+.|+.......++++|..+-+... .+.... ...+...+.-+.+.
T Consensus       123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~-~i~V~~-~g~pv~~LNELE~i  183 (264)
T PF05096_consen  123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR-TIQVTD-NGRPVSNLNELEYI  183 (264)
T ss_dssp             EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE-EEE-EE-TTEE---EEEEEEE
T ss_pred             EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEE-EEEEEE-CCEECCCcEeEEEE
Confidence            76545455556666  578888888888889999887655533 333322 12234556666665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.60  E-value=3.4  Score=39.29  Aligned_cols=117  Identities=9%  Similarity=0.164  Sum_probs=86.7

Q ss_pred             ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecC--CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-
Q 012367          307 GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-  382 (465)
Q Consensus       307 gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~-  382 (465)
                      |-...|.++.|+|+ +.|++......-.||=...|+.++++.-  -.....|.+.. ++.|.++-=.++.+.++.+... 
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCc
Confidence            55566999999997 5788888888888887788999998852  22445667766 7777777777888888877543 


Q ss_pred             eEE-------e--cccC-CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          383 RVV-------D--WADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       383 ~~~-------~--~~~~-~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .++       .  ...+ +.....++|.|..+.|.++-...-+.||.+....
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence            211       1  1122 5567889999999999999999888998887443

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.54  E-value=0.75  Score=49.01  Aligned_cols=105  Identities=18%  Similarity=0.112  Sum_probs=62.0

Q ss_pred             ccccceEEEEecCCC-EEEEEe------CCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-CcEEE
Q 012367          307 GHKGDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-GKVRI  376 (465)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s------~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-g~I~i  376 (465)
                      +....+.+.+++|++ .++...      .|.  .|.+++... .. ..+......++-.|+| ++..+.+.+.. ..+++
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEE
Confidence            333467888899986 333332      243  455556532 22 3332233478889999 87877776533 12223


Q ss_pred             E-----------eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367          377 W-----------GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF  417 (465)
Q Consensus       377 w-----------d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i  417 (465)
                      .           ++..+....  .....|..+.|+|||..++... +|.|.+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            3           333332222  3356799999999999888765 577766

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.50  E-value=0.72  Score=45.92  Aligned_cols=100  Identities=13%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             ccCCCCEEEEE---------eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          358 NPIDDNYFISG---------SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       358 sp~~~~~l~sg---------s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      || |+++++..         +..+.+.|||+.+++...+......+....|+|+|+.++... ++.|.++++.++...  
T Consensus         1 S~-d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--   76 (353)
T PF00930_consen    1 SP-DGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--   76 (353)
T ss_dssp             -T-TSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--
T ss_pred             CC-CCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--
Confidence            35 66665552         234679999999998888766678899999999999988875 678999998777333  


Q ss_pred             EeeecCc-cccc-----------CCceeeEEEeecCCccceeeee
Q 012367          429 KVDFHDR-KKTS-----------GNKITGIQGRISKNYDNFRRFQ  461 (465)
Q Consensus       429 ~~~~~~~-~~~~-----------~~~It~~~f~p~gs~d~~~~~~  461 (465)
                      ++...+. ....           ...-.++.|+|++.+--+..++
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            2322220 0000           2334678899999886654443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.45  E-value=2.5  Score=46.06  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=56.2

Q ss_pred             ceEEEEEccCCCCEEEEEeCCCcEEEEeCCC----------Ce--EE--e--------cccCCCCeEEEEEeeC---CCE
Q 012367          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----------KR--VV--D--------WADVRDVISAICYIPD---GKG  405 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~----------~~--~~--~--------~~~~~~~V~sv~~spd---g~~  405 (465)
                      .|..|.+|| +|.+++..|..| |.|-.+..          ++  +.  .        .......|..+.|+|.   +..
T Consensus        86 ~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            588999999 999998888755 44444421          11  11  0        1234457889999996   579


Q ss_pred             EEEEEcCCcEEEEEecCCceeeeEeee
Q 012367          406 FIVGSITGTCHFYKASGNDLKLEKVDF  432 (465)
Q Consensus       406 l~sgs~dG~v~iwd~~~~~~~~~~~~~  432 (465)
                      |++-+.|+++|+||+....-+...+.+
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~~~  190 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVLSL  190 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEEEc
Confidence            999999999999999866555554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.01  E-value=1.5  Score=40.50  Aligned_cols=73  Identities=12%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-------c--------cCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------A--------DVRDVISAICYIPDGKGFIVGSITG  413 (465)
Q Consensus       349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-------~--------~~~~~V~sv~~spdg~~l~sgs~dG  413 (465)
                      ..++..+..   ++.++++-..+|.+++||+.+++.+..       .        .....|..+.++.+|.-+++- .+|
T Consensus        12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng   87 (219)
T PF07569_consen   12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG   87 (219)
T ss_pred             CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence            344444443   788999999999999999998875531       1        355678999999888776665 468


Q ss_pred             cEEEEEecCCce
Q 012367          414 TCHFYKASGNDL  425 (465)
Q Consensus       414 ~v~iwd~~~~~~  425 (465)
                      ..+.|+.+-+.-
T Consensus        88 ~~y~y~~~L~~W   99 (219)
T PF07569_consen   88 DSYSYSPDLGCW   99 (219)
T ss_pred             CEEEecccccee
Confidence            899998765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.59  E-value=15  Score=36.10  Aligned_cols=165  Identities=16%  Similarity=0.213  Sum_probs=98.4

Q ss_pred             EEEECCCCCEEEEEeC----------CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          227 TLKFSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       227 ~l~fspdg~~LaSgs~----------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+..+|+|+.+++++.          .-.|.+||..+.........+..+.                             
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R-----------------------------   90 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR-----------------------------   90 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----------------------------
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch-----------------------------
Confidence            3568999998887532          3469999999876654433322100                             


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-E--EEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-Y--LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~--l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                           .... .+   ...+++++++ +  +.-.+--..|.|-|+..++.+..+...+   |...-|...+-|.+-+.||+
T Consensus        91 -----~~~~-~~---~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGs  158 (342)
T PF06433_consen   91 -----AQVV-PY---KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGS  158 (342)
T ss_dssp             -------BS------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSC
T ss_pred             -----heec-cc---ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCc
Confidence                 0000 01   1123455554 2  2233445679999999999998887655   33333434566888889999


Q ss_pred             EEEEeCC-CCeEEe-----cccCCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-Eeee
Q 012367          374 VRIWGVC-EKRVVD-----WADVRD-VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDF  432 (465)
Q Consensus       374 I~iwd~~-~~~~~~-----~~~~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~  432 (465)
                      +.-..+. .|+...     +....+ .+..-++...+..++--+.+|.|+--|+.+...... .+.+
T Consensus       159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            9988886 444432     111222 233445555666677789999999999998876554 4543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.23  E-value=9.2  Score=36.08  Aligned_cols=142  Identities=17%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             ceEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe-CCCCe--EE
Q 012367          311 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--VV  385 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd-~~~~~--~~  385 (465)
                      .+.+.++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+.  .+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            67889999876 343333 23333344333333333332334778889999 777777766667777773 33332  22


Q ss_pred             --ecccCCCCeEEEEEeeCCCEEEEEE---cCCcEEEEEecCCcee--eeEeeecCcccccCCceeeEEEeecCC
Q 012367          386 --DWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       386 --~~~~~~~~V~sv~~spdg~~l~sgs---~dG~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                        .+......|+++.++|||..++.-.   .++.|.+--+....--  ................++++.|.++++
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence              2332333899999999999877766   3577776655422111  111111111111246788888887754

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=91.10  E-value=3  Score=44.34  Aligned_cols=91  Identities=9%  Similarity=0.022  Sum_probs=53.0

Q ss_pred             eEEEEeCCCCeEe--EEecCCC-ceEEEEEccCCCCEEEEEeCC------CcEEEEeCCC-CeEEecccCC---CCeEEE
Q 012367          331 TVRMWQVGCNQCL--NVFDHHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCE-KRVVDWADVR---DVISAI  397 (465)
Q Consensus       331 tV~lWD~~~~~~l--~~~~h~~-~V~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~-~~~~~~~~~~---~~V~sv  397 (465)
                      +|..||..+.+=.  ..+.+.. ....+.+   ++.+.+.|+.+      ..+..||..+ .+........   .....+
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~  509 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI  509 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence            5778888776422  2221111 1112222   67777888764      2467899887 5554332222   222222


Q ss_pred             EEeeCCCEEEEEEcCC--cEEEEEecCCcee
Q 012367          398 CYIPDGKGFIVGSITG--TCHFYKASGNDLK  426 (465)
Q Consensus       398 ~~spdg~~l~sgs~dG--~v~iwd~~~~~~~  426 (465)
                      .+  +|+..++|+.+|  .+-.||..+++..
T Consensus       510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EE--CCEEEEEeeecceeehhhcCccccccc
Confidence            22  788999999998  7788888877553

>PRK13684 Ycf48-like protein; Provisional

Probab=90.61  E-value=18  Score=35.60  Aligned_cols=107  Identities=10%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                      ..+.++.+.+++.++..+..|.+++=....+..-....     ....+..+.+.| ++..+++| .+|.|. .....++-
T Consensus       215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~t  291 (334)
T PRK13684        215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKT  291 (334)
T ss_pred             ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCC
Confidence            56778888887755555667776543333343322221     123578899998 77766655 466554 33343332


Q ss_pred             Ee-c---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          385 VD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       385 ~~-~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      -. .   .........+.|..+++.++ .+..|.|--|+-
T Consensus       292 W~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        292 WEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             CeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence            21 1   22334577788887766655 457888876653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.56  E-value=22  Score=36.24  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=46.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      ..++..=+.||.+.+|+-..--........--...++|.|.-..|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            46788889999999999877655444444445566889998889999999888888875

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.56  E-value=5  Score=40.50  Aligned_cols=106  Identities=19%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             CCeEEEEeCCCCeEeEEecCC---CceEEEEEccC-CCCE-EEEEeCCCcEEEEeC-CCCe-----EEeccc--------
Q 012367          329 DKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDNY-FISGSIDGKVRIWGV-CEKR-----VVDWAD--------  389 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~h~---~~V~~i~fsp~-~~~~-l~sgs~Dg~I~iwd~-~~~~-----~~~~~~--------  389 (465)
                      ..++.+||+.+.+.++++...   ..+..|.|... +..+ |+.+...++|..|-- ..+.     ++....        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            368999999999999999644   24566777431 3334 333334555555433 3332     222211        


Q ss_pred             ---------CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeee--EeeecC
Q 012367          390 ---------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE--KVDFHD  434 (465)
Q Consensus       390 ---------~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~--~~~~~~  434 (465)
                               ...-|+.|..|.|.++|.+.+. +|.++.||++...-+..  ++.+-+
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG  357 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG  357 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence                     1355899999999999988886 89999999997554333  555444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.34  E-value=7.2  Score=37.41  Aligned_cols=117  Identities=16%  Similarity=0.254  Sum_probs=74.8

Q ss_pred             CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe------CCCcEEEEeCCCCeEEeccc-----CCCCeEEE
Q 012367          330 KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWAD-----VRDVISAI  397 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs------~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv  397 (465)
                      ..|++||..+.+=...- .-.+.|+.+.|.. +.++++.|.      ....+..||+.+.....+.+     ..++|+++
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            45999998866543333 3567899999985 667777765      35678899999887755444     34788888


Q ss_pred             EEee-CC-CEEEEEE-cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          398 CYIP-DG-KGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       398 ~~sp-dg-~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .+.. |+ +..+.|. .+|.-.+...++.+.......    .......|.++++.|-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~----~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSD----ILGSGTTIRGLQVLPL  147 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEecccc----ccCCCCEEEEEEEEec
Confidence            8753 33 3444555 466666666665544322111    1123467888888776

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.12  E-value=17  Score=34.29  Aligned_cols=103  Identities=15%  Similarity=0.235  Sum_probs=61.8

Q ss_pred             ceEEEEecCCCEEEEE-eCCCeEEEEe-CCCCeEeE-Eec---CCCceEEEEEccCCCCEEEEEe---CCCcEEEEeCC-
Q 012367          311 DVLDLAWSNSNYLLSC-SMDKTVRMWQ-VGCNQCLN-VFD---HHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVC-  380 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~-s~DgtV~lWD-~~~~~~l~-~~~---h~~~V~~i~fsp~~~~~l~sgs---~Dg~I~iwd~~-  380 (465)
                      .+..-.|++++.+.+. ..+...+++. ..++.... ...   ....|..+.++| |+..++...   .++.|.|=-+. 
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEe
Confidence            5666778887755544 3455556663 33332221 111   122899999999 888776655   34667766542 


Q ss_pred             --CC--eE----Ee-cccCCCCeEEEEEeeCCCEEEEEEcCCc
Q 012367          381 --EK--RV----VD-WADVRDVISAICYIPDGKGFIVGSITGT  414 (465)
Q Consensus       381 --~~--~~----~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~  414 (465)
                        .+  ..    .. .......++++.|.+++.+++.+...+.
T Consensus       146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence              22  11    11 1233567999999999988777766443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.97  E-value=5.7  Score=43.76  Aligned_cols=109  Identities=12%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceE---------EEEEcc---------------CCCCEEEEEeCCCcEE
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT---------CVQFNP---------------IDDNYFISGSIDGKVR  375 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~---------~i~fsp---------------~~~~~l~sgs~Dg~I~  375 (465)
                      ++.|+.++.++.|.-.|..+|+.+..+.....+.         .+.+..               .++..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            5688888889999999999999999886433221         122211               1345788888999999


Q ss_pred             EEeCCCCeEEecccCCCCeE-------------EEEEee--CCCEEEEEEc----------CCcEEEEEecCCceeee
Q 012367          376 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLE  428 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~-------------sv~~sp--dg~~l~sgs~----------dG~v~iwd~~~~~~~~~  428 (465)
                      -.|..+++.+...+....|.             .+.-.|  .+..+++|+.          +|.|+-||+.++++.-.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            99999998875333322221             111112  2345666643          68999999999998655

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.39  E-value=3.4  Score=36.47  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             cceEEEEecCCC-------EEEEEeCCCeEEEEeCCC
Q 012367          310 GDVLDLAWSNSN-------YLLSCSMDKTVRMWQVGC  339 (465)
Q Consensus       310 ~~V~~l~~s~~~-------~l~s~s~DgtV~lWD~~~  339 (465)
                      ..|..++|||.|       +|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            488999999843       788999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.27  E-value=1.5  Score=28.92  Aligned_cols=31  Identities=10%  Similarity=0.201  Sum_probs=25.8

Q ss_pred             CCeEEEEEeeCC---CEEEEEEcCCcEEEEEecC
Q 012367          392 DVISAICYIPDG---KGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       392 ~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~  422 (465)
                      +.|.++.|+|++   .+|+.+-..|.|+++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4778877889999999985

It contains a characteristic DLL sequence motif.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.06  E-value=10  Score=40.48  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=69.3

Q ss_pred             EEEEecCCCEEEEEeCC------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc-----EEEEeCCC
Q 012367          313 LDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVCE  381 (465)
Q Consensus       313 ~~l~~s~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~-----I~iwd~~~  381 (465)
                      .+++..++...++|+.|      .++..||..+++=...-.....-........++.+.+.||.||.     |-.||..+
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence            34555566677888888      36888888877622211111111111111227889999999864     77788877


Q ss_pred             CeEEecccCCCCeEEEEE-eeCCCEEEEEEcCC------cEEEEEecCCceeee
Q 012367          382 KRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLE  428 (465)
Q Consensus       382 ~~~~~~~~~~~~V~sv~~-spdg~~l~sgs~dG------~v~iwd~~~~~~~~~  428 (465)
                      .+..............+. .-+|+..++|+.+|      ++..||..+++....
T Consensus       406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            765544433333333332 23788888888654      567888888776543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.88  E-value=17  Score=33.17  Aligned_cols=110  Identities=14%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC--CCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---C---cEEEE---eCC--
Q 012367          314 DLAWSNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G---KVRIW---GVC--  380 (465)
Q Consensus       314 ~l~~s~~~~l~s~s~DgtV~lWD~~--~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g---~I~iw---d~~--  380 (465)
                      .++-.+.+.|+.+...+.|.+|++.  ..+.+..|..-+.|..+.++. .|+|++|-=.+   .   .+|+|   ...  
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            3443443445444666789999987  445677787778999999999 89999986432   2   56765   221  


Q ss_pred             CCe--EEeccc---------------------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          381 EKR--VVDWAD---------------------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       381 ~~~--~~~~~~---------------------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ...  .++..+                     ....+.+++..|-..-|++|+ ++.+.+|.+.....
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence            111  111222                     234577888888555566665 45788998876555

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.56  E-value=5.5  Score=36.74  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe---------------cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF---------------DHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~---------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      ++..+. ..+.+|++.+.+|.+++||+.+++++..-               .....|..+.++. +|.-+++-+ +|..+
T Consensus        14 ~~~~l~-~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y   90 (219)
T PF07569_consen   14 PVSFLE-CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSY   90 (219)
T ss_pred             ceEEEE-eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEE
Confidence            333444 24568999999999999999988765432               2345788888887 788777766 57889


Q ss_pred             EEeCCCCeEEec
Q 012367          376 IWGVCEKRVVDW  387 (465)
Q Consensus       376 iwd~~~~~~~~~  387 (465)
                      .|+..-+..+..
T Consensus        91 ~y~~~L~~W~~v  102 (219)
T PF07569_consen   91 SYSPDLGCWIRV  102 (219)
T ss_pred             EeccccceeEEe
Confidence            999877765543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=88.38  E-value=26  Score=34.12  Aligned_cols=108  Identities=12%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             ceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCC--C----eEeEEe-c-CCCceEEEEEccCCCCEEEEEeCC
Q 012367          302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC--N----QCLNVF-D-HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~--~----~~l~~~-~-h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .+.+.+|-..-+.|+|||++  ++++=+..+.|.-|++..  +    +....+ . ..+..-.++... ++++.+++..+
T Consensus       155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~  233 (307)
T COG3386         155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWG  233 (307)
T ss_pred             EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccC
Confidence            33444455566789999987  444555568888887752  1    111111 1 334555666666 78888655544


Q ss_pred             C-cEEEEeCCCCeEEecccCC-CCeEEEEEe-eCCCEEEEEEc
Q 012367          372 G-KVRIWGVCEKRVVDWADVR-DVISAICYI-PDGKGFIVGSI  411 (465)
Q Consensus       372 g-~I~iwd~~~~~~~~~~~~~-~~V~sv~~s-pdg~~l~sgs~  411 (465)
                      | .|.+|+.. ++++...... ..+++++|- |+.+.|.+.+.
T Consensus       234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            4 89999988 6666544433 788888886 45565555544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.28  E-value=13  Score=37.16  Aligned_cols=98  Identities=9%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             cceEEEEecCCCEEEEEeC------------CC-eEEEEeCCC--Ce--EeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          310 GDVLDLAWSNSNYLLSCSM------------DK-TVRMWQVGC--NQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~------------Dg-tV~lWD~~~--~~--~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .....|+|.+++.|+.+..            .+ .|.+++-.+  ++  ....| ..-.....+++.+ ++ ++++ +..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC
Confidence            4556789988875555532            23 676765432  33  22344 2334568899988 77 5554 444


Q ss_pred             CcEEEEeCCC-------Ce-EEe-ccc----CCCCeEEEEEeeCCCEEEEEE
Q 012367          372 GKVRIWGVCE-------KR-VVD-WAD----VRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       372 g~I~iwd~~~-------~~-~~~-~~~----~~~~V~sv~~spdg~~l~sgs  410 (465)
                      ..+++.|...       .+ ++. +..    +......++|.|||.+.++-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4444445532       11 222 222    245578999999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.18  E-value=3.1  Score=46.42  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             cceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          310 GDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       310 ~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      ..+.++.|+|.  -..+.+..|+.|++.-+... .....+.....++|++|+| .|.-++.|-..|++.-|...-.....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~  234 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSE  234 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeec
Confidence            45678889874  35777888999998877532 3344456777899999999 99999999999999998764432221


Q ss_pred             cc----cCCCCeEEEEEeeCCCEEEE
Q 012367          387 WA----DVRDVISAICYIPDGKGFIV  408 (465)
Q Consensus       387 ~~----~~~~~V~sv~~spdg~~l~s  408 (465)
                      +.    .-...|.+|+|-....++++
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEE
Confidence            11    12467999999877666655

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.76  E-value=25  Score=35.74  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-ceeee-
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-EVFQI-  297 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  297 (465)
                      ..+|+|.+++||+|.+.||.--.|++|.+.+....+......... ........+.  +|......+.+...+ .+|.. 
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF--~W~~s~e~A~i~~~G~e~y~v~  140 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGF--CWTSSTEIAFITDQGIEFYQVL  140 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEE--EEecCeeEEEEecCCeEEEEEc
Confidence            357799999999999999999999999999984322211110000 0000000000  111111112221111 22222 


Q ss_pred             -cCCcceeeeccccceEEEEecCCC--EEEEEe-CCCeEEEEeCCCC
Q 012367          298 -EESPLQELHGHKGDVLDLAWSNSN--YLLSCS-MDKTVRMWQVGCN  340 (465)
Q Consensus       298 -~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s-~DgtV~lWD~~~~  340 (465)
                       +...++..+.|...|.-..|.++.  .|++.+ ..++..=+.++++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence             233455666788888888888864  233333 4455554555444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.61  E-value=4.2  Score=41.56  Aligned_cols=97  Identities=19%  Similarity=0.256  Sum_probs=62.7

Q ss_pred             EEEeCCCeEEEEeCCC-CeEeEEecCCCceEEEEEcc---CCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEE
Q 012367          324 LSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNP---IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAIC  398 (465)
Q Consensus       324 ~s~s~DgtV~lWD~~~-~~~l~~~~h~~~V~~i~fsp---~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~  398 (465)
                      +.|-.+..|--.|.+- |.-+.......+++.-.|+.   +..-|++.||..|-||+||.-..+.-+ +.+....|..+.
T Consensus       531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id  610 (776)
T COG5167         531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID  610 (776)
T ss_pred             EEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence            3444444454445542 33334434444444444443   245699999999999999976654443 566788899999


Q ss_pred             EeeCCCEEEEEEcCCcEEEEEec
Q 012367          399 YIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       399 ~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      .+.+|+++++.+.. .+.+-|+.
T Consensus       611 vta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         611 VTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             eecCCcEEEEeecc-eEEEEecc
Confidence            99999998877644 56666665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.51  E-value=33  Score=34.87  Aligned_cols=127  Identities=14%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             CeEEEEeCCCCeEeEEecC----CCceEEEEEccCCCCEEEEEe--------------------CCCcEEEEeCCCCeEE
Q 012367          330 KTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGS--------------------IDGKVRIWGVCEKRVV  385 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h----~~~V~~i~fsp~~~~~l~sgs--------------------~Dg~I~iwd~~~~~~~  385 (465)
                      |-+.+.|-.+...+.....    ...-+.+-|.| ..+.++|..                    ...++.+||+.+.+++
T Consensus       157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~  235 (461)
T PF05694_consen  157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL  235 (461)
T ss_dssp             -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred             CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence            4577778777776666532    33556778888 777777764                    3468999999999988


Q ss_pred             ecccCC---CCeEEEEEeeC--CCEEEEE-EcCCcEE-EEEecCCceeee-EeeecCccccc-------------CCcee
Q 012367          386 DWADVR---DVISAICYIPD--GKGFIVG-SITGTCH-FYKASGNDLKLE-KVDFHDRKKTS-------------GNKIT  444 (465)
Q Consensus       386 ~~~~~~---~~V~sv~~spd--g~~l~sg-s~dG~v~-iwd~~~~~~~~~-~~~~~~~~~~~-------------~~~It  444 (465)
                      ......   ..+..|.|..+  ..+-++| -..++|. +|....++.+.+ .+....++...             ..-||
T Consensus       236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit  315 (461)
T PF05694_consen  236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT  315 (461)
T ss_dssp             EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred             eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence            755543   35667777654  3333333 3355554 445467776666 45544432211             24589


Q ss_pred             eEEEeecCCccce
Q 012367          445 GIQGRISKNYDNF  457 (465)
Q Consensus       445 ~~~f~p~gs~d~~  457 (465)
                      .+.++.++.|..+
T Consensus       316 DI~iSlDDrfLYv  328 (461)
T PF05694_consen  316 DILISLDDRFLYV  328 (461)
T ss_dssp             -EEE-TTS-EEEE
T ss_pred             eEEEccCCCEEEE
Confidence            9999999887653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.46  E-value=53  Score=36.64  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccC--CCC---EEEEEeCCCcEEEEeC-CCCeEEec--
Q 012367          319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI--DDN---YFISGSIDGKVRIWGV-CEKRVVDW--  387 (465)
Q Consensus       319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~--~~~---~l~sgs~Dg~I~iwd~-~~~~~~~~--  387 (465)
                      +.-.++.++.++.+...++..+. ++...   ....|.|+.++|.  +.+   +++.|.++..+.+.-. .+...+..  
T Consensus       498 n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~  576 (1096)
T KOG1897|consen  498 NASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQ  576 (1096)
T ss_pred             cceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeec
Confidence            33467777777777777776655 33332   4568999999985  333   8899988877665443 34433331  


Q ss_pred             cc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          388 AD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       388 ~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ..   ....|.-.++-.|+.+|+++..||.+..|.+..++.++
T Consensus       577 l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  577 LSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             cCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence            12   33445556666778999999999999888776555543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.04  E-value=28  Score=32.97  Aligned_cols=180  Identities=14%  Similarity=0.096  Sum_probs=102.0

Q ss_pred             EEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          225 IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      .-.+.|..+|.++-|.|.-|  .|+.+|+.+++.......+...                            |.      
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------------------------Fg------   92 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------------------------FG------   92 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------E------
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----------------------------cc------
Confidence            45788877888888888877  7888999887654332221110                            00      


Q ss_pred             eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      .-+.-+.+.+..+.|          .++++.+||..+-+.+..|.....=+.++.   ++..|+.......|+++|..+-
T Consensus        93 EGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen   93 EGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             EEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-
T ss_pred             eeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCccc
Confidence            000112334444444          568899999999999999987777778874   5666666666788999998775


Q ss_pred             eEEec---ccC---CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc---------ccccCCceeeEE
Q 012367          383 RVVDW---ADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITGIQ  447 (465)
Q Consensus       383 ~~~~~---~~~---~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~It~~~  447 (465)
                      +....   ...   -..++-+-|. +|...|=.=....|...|..++...- .+++.+-         +.....-..|++
T Consensus       160 ~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~-~iDls~L~~~~~~~~~~~~~~dVLNGIA  237 (264)
T PF05096_consen  160 KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVG-WIDLSGLRPEVGRDKSRQPDDDVLNGIA  237 (264)
T ss_dssp             SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEE-EEE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred             ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEE-EEEhhHhhhcccccccccccCCeeEeEe
Confidence            44331   111   2245566665 55444444445666677777766532 2322211         111246789999


Q ss_pred             EeecCC
Q 012367          448 GRISKN  453 (465)
Q Consensus       448 f~p~gs  453 (465)
                      +.|...
T Consensus       238 yd~~~~  243 (264)
T PF05096_consen  238 YDPETD  243 (264)
T ss_dssp             EETTTT
T ss_pred             EeCCCC
Confidence            987643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=86.31  E-value=13  Score=39.77  Aligned_cols=71  Identities=10%  Similarity=0.216  Sum_probs=50.1

Q ss_pred             ccccceEEEEec--CC-CEEEEEeCCCeEEEEeCC---------CCeEeEEe---cCC-CceEEEEEccCCCCEEEEEeC
Q 012367          307 GHKGDVLDLAWS--NS-NYLLSCSMDKTVRMWQVG---------CNQCLNVF---DHH-NYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       307 gh~~~V~~l~~s--~~-~~l~s~s~DgtV~lWD~~---------~~~~l~~~---~h~-~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      ...+.|.++.|.  |+ +.+++.+....|.++--.         +-..++.+   .+. .+|.+..|.+ +|.+++..  
T Consensus        70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--  146 (631)
T PF12234_consen   70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--  146 (631)
T ss_pred             cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--
Confidence            356889999997  44 478899999999998542         11244444   243 6899999998 77666544  


Q ss_pred             CCcEEEEeCC
Q 012367          371 DGKVRIWGVC  380 (465)
Q Consensus       371 Dg~I~iwd~~  380 (465)
                      ++.+.|+|-.
T Consensus       147 GNqlfv~dk~  156 (631)
T PF12234_consen  147 GNQLFVFDKW  156 (631)
T ss_pred             CCEEEEECCC
Confidence            4678888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.14  E-value=8.8  Score=38.96  Aligned_cols=49  Identities=20%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA  256 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~  256 (465)
                      ...++.+...|......+.+|..+|++++.|+...=|.|.++|+.++..
T Consensus       293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v  341 (415)
T PF14655_consen  293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV  341 (415)
T ss_pred             CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence            3455666677888888899999999999999988889999999987644

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.08  E-value=41  Score=34.05  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-----EeEEecCC---CceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-----CLNVFDHH---NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-----~l~~~~h~---~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      ...+..+.+.+++.++.++.+|.+.. ....+.     ........   ..++.+.|.+ ++..+++| ..|.+.... .
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-D  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-C
Confidence            34577888888876666667776543 333343     22222222   3588999987 76666655 567666654 3


Q ss_pred             CCeE-Eec---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367          381 EKRV-VDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFY  418 (465)
Q Consensus       381 ~~~~-~~~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw  418 (465)
                      .++. ...   .........+.|.++++.+++| .+|.|.-|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            3332 221   2345668899998877666665 67776544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=86.06  E-value=40  Score=33.79  Aligned_cols=107  Identities=7%  Similarity=0.059  Sum_probs=57.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEcc-CCCCEEEEEe----------------------CCCcEEE
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS----------------------IDGKVRI  376 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp-~~~~~l~sgs----------------------~Dg~I~i  376 (465)
                      ..++-......|+--|+.+.+....+. ....+-...|.. .++..++-.-                      ....|.-
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~  172 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT  172 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence            455444455677777887776555554 344444445532 1444432211                      1233555


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC-----cEEEEEecCCceee
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKL  427 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG-----~v~iwd~~~~~~~~  427 (465)
                      .|+.+++......-..++..+.|+|....+++=+..|     ..|||-++...-..
T Consensus       173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~  228 (386)
T PF14583_consen  173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV  228 (386)
T ss_dssp             EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred             EECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence            6778887777777788899999999777777766544     24778776544433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=85.44  E-value=28  Score=36.58  Aligned_cols=95  Identities=16%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             EEEecCCC-EEEEEeCCCeEEEEeCCCC--eEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEE----
Q 012367          314 DLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVV----  385 (465)
Q Consensus       314 ~l~~s~~~-~l~s~s~DgtV~lWD~~~~--~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~----  385 (465)
                      .+.|+|.. .|+.-.....-.+++++..  +....+...+.|.|.+|.+ ||+.|+.+- ..=.-+|||-..+.+.    
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf  195 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF  195 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence            46789875 3333333333345565433  3444557888999999999 777766553 3334679986544322    


Q ss_pred             -ecccCCCCeEEEEEeeCCCEEEEEE
Q 012367          386 -DWADVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       386 -~~~~~~~~V~sv~~spdg~~l~sgs  410 (465)
                       ...+..+.|.++.-.-|. .+|+++
T Consensus       196 cPVFdv~~~Icsi~AT~ds-qVAvaT  220 (671)
T PF15390_consen  196 CPVFDVGGYICSIEATVDS-QVAVAT  220 (671)
T ss_pred             ceeecCCCceEEEEEeccc-eEEEEe
Confidence             234556677777666554 445554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.39  E-value=23  Score=32.22  Aligned_cols=169  Identities=18%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             CCCEEEEEeCC--CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecc--
Q 012367          233 DGRYLASGGED--GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH--  308 (465)
Q Consensus       233 dg~~LaSgs~D--g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh--  308 (465)
                      +|.++.+.|.-  ..|++||+.+++...........   ....+....  ........+.....|......+..+..|  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~---~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT---VFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCcc---ccccceeec--cceEEEEEeccceeEEEChHHhhhhccccc
Confidence            56677777654  46999999987766543332100   000111000  0011112222222233322222222222  


Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCc---eEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNY---VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~---V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      .+.=+.++....+ |+.+....+++.-|.++...+....   ...+   ++-+.|-  +|...+-.-.+..|...|..+|
T Consensus       130 ~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         130 EGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             CCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCC
Confidence            2344555533333 5555555677777776544433332   1112   2333443  5666666666777777788888


Q ss_pred             eEEeccc-------------CCCCeEEEEEeeCC-CEEEEE
Q 012367          383 RVVDWAD-------------VRDVISAICYIPDG-KGFIVG  409 (465)
Q Consensus       383 ~~~~~~~-------------~~~~V~sv~~spdg-~~l~sg  409 (465)
                      +++.+..             +.+..+.+++.|++ +++++|
T Consensus       207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            8776433             33457789999987 455555

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=84.51  E-value=25  Score=37.46  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             CEEEEEeCC------CeEEEEeCCCCeEeEEecC---CCceEEEEEccCCCCEEEEEeCCCc-----EEEEeCCCCeEEe
Q 012367          321 NYLLSCSMD------KTVRMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVCEKRVVD  386 (465)
Q Consensus       321 ~~l~s~s~D------gtV~lWD~~~~~~l~~~~h---~~~V~~i~fsp~~~~~l~sgs~Dg~-----I~iwd~~~~~~~~  386 (465)
                      ...+.|+.|      .+|..||..++.-...-..   ........+   ++.+.+.||.|+.     |..||..+.+...
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            355666655      3578888877653322211   111112222   6788888887763     7789998887776


Q ss_pred             cccCCCCeEEEEEee-CCCEEEEEEcCC-----cEEEEEecCCcee
Q 012367          387 WADVRDVISAICYIP-DGKGFIVGSITG-----TCHFYKASGNDLK  426 (465)
Q Consensus       387 ~~~~~~~V~sv~~sp-dg~~l~sgs~dG-----~v~iwd~~~~~~~  426 (465)
                      ..........+.... +++..++|+.||     +|-.||..+++..
T Consensus       506 v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  506 VAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             cccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence            554444444433333 567788888876     4556666655543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.13  E-value=2.5  Score=44.98  Aligned_cols=78  Identities=14%  Similarity=0.330  Sum_probs=55.5

Q ss_pred             EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       342 ~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      |.+..+....+++++-+| .+.-++.++.||.|++|+....+...+.....+-..+.|...|  |++.+.|.++.-|.-.
T Consensus         7 ~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen    7 CSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             ccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence            333344556788999999 9999999999999999998765544433334444556666554  7777888888888654


Q ss_pred             C
Q 012367          422 G  422 (465)
Q Consensus       422 ~  422 (465)
                      +
T Consensus        84 g   84 (1636)
T KOG3616|consen   84 G   84 (1636)
T ss_pred             C
Confidence            3

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.88  E-value=5.6  Score=35.11  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=26.9

Q ss_pred             CCeEEEEEeeCC------CEEEEEEcCCcEEEEEecCC
Q 012367          392 DVISAICYIPDG------KGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       392 ~~V~sv~~spdg------~~l~sgs~dG~v~iwd~~~~  423 (465)
                      ..|.+++|+|-|      -.|++.+.+|.|.||....+
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            379999999965      36888999999999988755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.87  E-value=11  Score=38.78  Aligned_cols=76  Identities=12%  Similarity=0.078  Sum_probs=51.5

Q ss_pred             ceEEEEEccCCCCEEEEEeCCCcEEEEe-----C----CCCeE-Ee--c---------ccCCCCeEEEEEeeCC---CEE
Q 012367          351 YVTCVQFNPIDDNYFISGSIDGKVRIWG-----V----CEKRV-VD--W---------ADVRDVISAICYIPDG---KGF  406 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd-----~----~~~~~-~~--~---------~~~~~~V~sv~~spdg---~~l  406 (465)
                      .|..+..++ .|..++-.|.+|.+.++=     -    ..++. +.  .         ....-.+..++|+|+.   ..|
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            467888889 888888888888766543     1    22211 10  1         1122336678999976   678


Q ss_pred             EEEEcCCcEEEEEecCCceee
Q 012367          407 IVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       407 ~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      +.-+.|..+|+||++..+-.+
T Consensus       184 ~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEEecCcEEEEEecCCcchhh
Confidence            888999999999998765443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.48  E-value=17  Score=38.33  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=69.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCC--ceE---E-------EEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT---C-------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  387 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V~---~-------i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~  387 (465)
                      ++.++.++.++.|.-.|..+|+.+..+....  .+.   +       +++   .+..++.++.|+.|.-.|..+++++-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            5678888888999999999999998875432  111   1       122   234677788899999999999988753


Q ss_pred             ccCCC-----CeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeee
Q 012367          388 ADVRD-----VISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLE  428 (465)
Q Consensus       388 ~~~~~-----~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~  428 (465)
                      .....     .+++--.--++ .+++++.      +|.|..+|..++++.-.
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            32211     12211111144 4555543      68999999999988655

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=82.88  E-value=13  Score=37.05  Aligned_cols=90  Identities=17%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC----------------cEEEEeCCCCeEEecccCCC
Q 012367          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG----------------KVRIWGVCEKRVVDWADVRD  392 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg----------------~I~iwd~~~~~~~~~~~~~~  392 (465)
                      +..|.-+|+.++......... +...+.-++ ++++++-=+.|.                .|+++++..+....+..|..
T Consensus       263 ~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~  340 (386)
T PF14583_consen  263 DFWIAGYDPDTGERRRLMEMP-WCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDT  340 (386)
T ss_dssp             -EEEEEE-TTT--EEEEEEE--SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE---
T ss_pred             ceEEEeeCCCCCCceEEEeCC-ceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccC
Confidence            446777788877654333222 344555566 888876544442                46678887776543333321


Q ss_pred             -----------CeEEEEEeeCCCEEEEEE-cCCcEEEEEe
Q 012367          393 -----------VISAICYIPDGKGFIVGS-ITGTCHFYKA  420 (465)
Q Consensus       393 -----------~V~sv~~spdg~~l~sgs-~dG~v~iwd~  420 (465)
                                 .=....|+|||+.++-.| ..|...||=+
T Consensus       341 sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  341 SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                       124689999999866555 5788777754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.35  E-value=59  Score=32.85  Aligned_cols=197  Identities=11%  Similarity=0.110  Sum_probs=88.2

Q ss_pred             cEEEEEECCCCCEEEEE-eCCC----cEEEEecCCceeeeeeecCCCC--cccccCCCeEEeccCCCCce--eEecCCce
Q 012367          224 CIWTLKFSPDGRYLASG-GEDG----VVRIWHVTSVAASCKSFTDDGG--FGSNAKEGKIKFGKKKSSHV--PVVIPDEV  294 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSg-s~Dg----~V~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  294 (465)
                      .+...++||+|++||-+ +..|    +|+|.|+.++......+.....  +........+..........  ....+..+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            44468999999988755 4444    5999999988665433221111  11111111111111000000  00001111


Q ss_pred             eee--cCCc---ceeeeccccc--eEEEEecCCC-E-EEEEeCC---CeEEEEeCCCC-----eEeEEecCCCceEEEEE
Q 012367          295 FQI--EESP---LQELHGHKGD--VLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCN-----QCLNVFDHHNYVTCVQF  357 (465)
Q Consensus       295 ~~~--~~~~---~~~~~gh~~~--V~~l~~s~~~-~-l~s~s~D---gtV~lWD~~~~-----~~l~~~~h~~~V~~i~f  357 (465)
                      +..  ....   ...+.+....  ...+..++++ + ++.....   ..|.+.|+..+     ...........+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            111  1111   1233333322  5677788875 4 3334333   34788888764     33333344444443333


Q ss_pred             ccCCCCEEEEEeC---CCcEEEEeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEE-cCC--cEEEEEec
Q 012367          358 NPIDDNYFISGSI---DGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGS-ITG--TCHFYKAS  421 (465)
Q Consensus       358 sp~~~~~l~sgs~---Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG--~v~iwd~~  421 (465)
                      +. ++.+++....   .+.|...++....    ...+..+...+.-..+...+.+|+... .++  .|++|++.
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            33 4444444332   3566667776543    123455555444444444455555544 444  56777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.34  E-value=18  Score=38.26  Aligned_cols=57  Identities=12%  Similarity=0.133  Sum_probs=37.3

Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      |.|.-+|+.++++.-..........-...-.|..+++++.+|.++.+|..+++...+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~  497 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWK  497 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence            457778888887665333222211111222455777888899999999999988664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.28  E-value=39  Score=33.24  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEe
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWH  250 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd  250 (465)
                      -+.|+|.|+|++|++ -..|.|++++
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            478999999987775 5599999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.05  E-value=20  Score=35.27  Aligned_cols=102  Identities=12%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeE---eEEec-----CCCceEEEEEccC---CCCEEEEEeCC--------
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC---LNVFD-----HHNYVTCVQFNPI---DDNYFISGSID--------  371 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~---l~~~~-----h~~~V~~i~fsp~---~~~~l~sgs~D--------  371 (465)
                      ..+.|+|.|++.++.+-..|.|++++ ..+..   +....     .......++++|.   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            45789999998777788899999999 44443   22221     3346789999992   24444444421        


Q ss_pred             CcEEEEeCCCC-------e-EEe-cc---cCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367          372 GKVRIWGVCEK-------R-VVD-WA---DVRDVISAICYIPDGKGFIVGSITG  413 (465)
Q Consensus       372 g~I~iwd~~~~-------~-~~~-~~---~~~~~V~sv~~spdg~~l~sgs~dG  413 (465)
                      ..|.-|.....       + ++. ..   ........+.|.|||.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            23333433322       1 221 11   2345567799999997666655433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.85  E-value=32  Score=31.87  Aligned_cols=130  Identities=12%  Similarity=0.135  Sum_probs=73.4

Q ss_pred             eEEEEecCCCEEEEEeCC----------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe--C
Q 012367          312 VLDLAWSNSNYLLSCSMD----------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG--V  379 (465)
Q Consensus       312 V~~l~~s~~~~l~s~s~D----------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd--~  379 (465)
                      .++-..+|+|....|.+.          |.++.|-.. ++.-..+..-.--+.++|+.....+.++-+.+-.|.-||  .
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~  189 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC  189 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence            344455677655555442          334444332 222222222223356788763344555666677787787  5


Q ss_pred             CCCeEE------eccc----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          380 CEKRVV------DWAD----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       380 ~~~~~~------~~~~----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      .++.+.      .+..    ..-..-.++...+|+..++.-..|+|.-.|..++++.++ +.+.      ..+||++.|-
T Consensus       190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e-iklP------t~qitsccFg  262 (310)
T KOG4499|consen  190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE-IKLP------TPQITSCCFG  262 (310)
T ss_pred             CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE-EEcC------CCceEEEEec
Confidence            565432      1211    111233455667888888888889999999999998665 3333      2467777664

>PHA03098 kelch-like protein; Provisional

Probab=81.71  E-value=34  Score=36.09  Aligned_cols=104  Identities=16%  Similarity=0.302  Sum_probs=55.6

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCC--------CcEEEEeCCCC
Q 012367          319 NSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--------GKVRIWGVCEK  382 (465)
Q Consensus       319 ~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~D--------g~I~iwd~~~~  382 (465)
                      .+..++.|+.+      ..+..||+.+++-...-.  ....-.+++..  ++.+++.|+.+        ..+.+||..+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            34455556532      458888987664322111  11111122222  56677777653        23889999887


Q ss_pred             eEEecccCC--CCeEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCce
Q 012367          383 RVVDWADVR--DVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDL  425 (465)
Q Consensus       383 ~~~~~~~~~--~~V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~  425 (465)
                      +........  ..-.++ ...+++.++.|+.+     ..+.+||..++..
T Consensus       467 ~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        467 KWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            655432211  111112 22367777888764     4678888877644

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=81.69  E-value=0.21  Score=50.28  Aligned_cols=139  Identities=12%  Similarity=0.188  Sum_probs=95.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      |-..-....|-|.+.-++.++.+..|..||-......                                           
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-------------------------------------------   69 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-------------------------------------------   69 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhcceec-------------------------------------------
Confidence            3333345677888878999999999999986542110                                           


Q ss_pred             cceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE-Eec--CCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~-~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                          -...++...+++|..++  .++.+-..+.+.+||+.+..... .++  |....  +.|++ ....++.|-..|.++
T Consensus        70 ----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~v  142 (615)
T KOG2247|consen   70 ----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIV  142 (615)
T ss_pred             ----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceE
Confidence                00123455677887643  56667777899999997643221 122  33222  67888 777888888899999


Q ss_pred             EEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEE
Q 012367          376 IWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       376 iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sg  409 (465)
                      |++..+.+.+...+ |...++.++|.+.+..+..+
T Consensus       143 iynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  143 IYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             EEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            99998877666556 99999999999987655443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.07  E-value=12  Score=40.58  Aligned_cols=129  Identities=16%  Similarity=0.254  Sum_probs=77.0

Q ss_pred             EEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          225 IWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       225 I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      |+-|....  +...|+.|..||.|.+|.+.+.............               ....          ....+|.
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~---------------~~~~----------r~~i~P~  157 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDND---------------SGFS----------RLKIKPF  157 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccc---------------cccc----------cccCCCC
Confidence            66666654  3348999999999999987642111100000000               0000          0011233


Q ss_pred             eeeeccccceEEEEec--CC-CEEEEEeCCCeEEEEeCCC--Ce--EeEEecCCCceEEEEEccCC--CC---EEEEEeC
Q 012367          303 QELHGHKGDVLDLAWS--NS-NYLLSCSMDKTVRMWQVGC--NQ--CLNVFDHHNYVTCVQFNPID--DN---YFISGSI  370 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s--~~-~~l~s~s~DgtV~lWD~~~--~~--~l~~~~h~~~V~~i~fsp~~--~~---~l~sgs~  370 (465)
                      ..+. ....+++++++  .. .++|.++....|.||-...  .+  ......+...|.+|+|.+.+  +.   ++++++.
T Consensus       158 f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI  236 (717)
T PF08728_consen  158 FHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI  236 (717)
T ss_pred             eEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence            3332 23478899987  44 4777777777788875433  11  11233477789999998833  22   7888999


Q ss_pred             CCcEEEEeC
Q 012367          371 DGKVRIWGV  379 (465)
Q Consensus       371 Dg~I~iwd~  379 (465)
                      .|.+.+|++
T Consensus       237 ~G~v~~~~I  245 (717)
T PF08728_consen  237 SGEVWTFKI  245 (717)
T ss_pred             cCcEEEEEE
Confidence            999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=80.65  E-value=1e+02  Score=34.62  Aligned_cols=108  Identities=12%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeEEe
Q 012367          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVD  386 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~~~~~  386 (465)
                      +.|.++..-++.+|  ++-...|++|+..+.+.++.- .+...+..+...- .++.++.|..=+.+.+.-.+.  +....
T Consensus       830 Gav~aL~~fngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  830 GAVYALVEFNGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             cceeehhhhCCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEE
Confidence            45555554444333  345578999999988666655 5778888888877 899999998888777665543  33544


Q ss_pred             --cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          387 --WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       387 --~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                        -.-+..+++++.+-.+ ..++.+..+|.+.+-...
T Consensus       907 vArD~~p~Wmtaveil~~-d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  907 VARDYNPNWMTAVEILDD-DTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eehhhCccceeeEEEecC-ceEEeecccccEEEEEec
Confidence              3347788888887744 456666778888877654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.48  E-value=33  Score=39.15  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA  255 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~  255 (465)
                      ......++|+|.-.++|.|...|.|+++-....+
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccceE
Confidence            3356679999999999999999999999876543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.20  E-value=18  Score=41.32  Aligned_cols=72  Identities=22%  Similarity=0.429  Sum_probs=52.7

Q ss_pred             CCceEEEEEccCCCCEEEEEeCCCcEEEEeCC----C-------Ce--------------EEecc-cCCCCeEEEEEeeC
Q 012367          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC----E-------KR--------------VVDWA-DVRDVISAICYIPD  402 (465)
Q Consensus       349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~----~-------~~--------------~~~~~-~~~~~V~sv~~spd  402 (465)
                      +..|+||.... +|+.|++|- ||  .+|.+.    .       .+              +.... .+.++|..+.....
T Consensus       178 g~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  178 GVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             CceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            55789999666 899888876 45  555541    1       00              11223 45678999999988


Q ss_pred             CCEEEEEEcCCcEEEEEecCCc
Q 012367          403 GKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       403 g~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .+.+.+-+..|+|.+|++.++.
T Consensus       254 R~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             cceeeeeccCceEEEEEccCCC
Confidence            8999999999999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	465
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-17
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-17
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-17
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-17
2h9l_A	329	Wdr5delta23 Length = 329		6e-17
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-17
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-17
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-17
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-17
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-17
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-17
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-17
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-17
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-17
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-07
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		5e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 109/258 (42%), Gaps = 60/258 (23%)
Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 6   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
           +G +LAS   D +++IW              DG F                         
Sbjct: 56  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 80
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 81  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 410 SITGTCHFY-KASGNDLK 426
           S  G C  +  ASG  LK
Sbjct: 190 SYDGLCRIWDTASGQCLK 207

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 109/258 (42%), Gaps = 60/258 (23%)
Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 8   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 57
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
           +G +LAS   D +++IW              DG F                         
Sbjct: 58  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 82
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 83  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 133 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 410 SITGTCHFY-KASGNDLK 426
           S  G C  +  ASG  LK
Sbjct: 192 SYDGLCRIWDTASGQCLK 209

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 149
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 50/213 (23%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 50/213 (23%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 75
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 76  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 155
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 149
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 63
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 64  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 99  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 154
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 50/213 (23%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 59
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 60  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 95  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 150
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 54
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 55  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 90  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 145
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 50/213 (23%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 50/213 (23%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 56/216 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 57
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 58  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G C K +       
Sbjct: 93  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 148
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           D +SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 50/213 (23%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LA+   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLK 426
           SA+ +  DG   +  S  G C  +  ASG  LK
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 91/242 (37%), Gaps = 61/242 (25%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +Q H+  I++L + P G  L SG  D  VRIW + +   S     +DG            
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG------------ 208
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV 337
                           V  +  SP        GD          Y+ + S+D+ VR+W  
Sbjct: 209 ----------------VTTVAVSP--------GD--------GKYIAAGSLDRAVRVWDS 236
Query: 338 GCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389
                +   D        H + V  V F   D    +SGS+D  V++W +  +   + +D
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNL--QNANNKSD 293
Query: 390 VRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
            +   S  C +     K F++   T     Y  SG+  K   V F D+K  SGN +  +Q
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKK--SGNPLLMLQ 349
Query: 448 GR 449
           G 
Sbjct: 350 GH 351

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 27/222 (12%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-----HVTSVAASCKS-----FTDDG 265
           Q +  H   +W + FSPDG+ +AS  +D  V++W     H+ ++     S     F+ DG
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 266 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 324
                            S    V + +   Q+    LQ L GH   V  +A+S +   + 
Sbjct: 357 -----------QTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384
           S S DKTV++W         +  H + V  V F+P DD    S S D  V++W    + +
Sbjct: 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLL 460
Query: 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426
                    +  + + PDG+     S   T   +  +G  L+
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 502

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 41/246 (16%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------VAASCK---- 259
           T L   + +Q H G +++L ++P+  ++ S  +DG + +W+  +      +   C     
Sbjct: 54  TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 260 -SFTDDG------GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312
            +F  +G      G  S               ++PV              + L GHKG  
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-------------RVLTGHKGYA 160
Query: 313 LDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNY 364
               +       L++ S D+T  +W V   Q +++F       H   V  +  N ++ N 
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 365 FISGSIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA-S 421
           FISGS D  VR+W   +  + V  +      I+++ + PDG+ F  GS  GTC  +   +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 422 GNDLKL 427
           G+ L++
Sbjct: 281 GHQLQV 286

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 163 KKLWKRII-------------SMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 209
           KK WK  I             S K  N  TC++     NS        E++   K     
Sbjct: 83  KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFG 268
             L        H+  I ++K++ DG ++ S   + V  +W+V S          + GG  
Sbjct: 143 NVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 269 SNAXXXXXXXXXXXSSHV----PVVIPDE-----VFQI-EESPLQELHGHKGDVLDLAWS 318
            NA                     VIP       V+QI E++P  +L GH G +  L ++
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 319 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           ++N  LLS S D T+R+W  G     N F  H+  + V  + + D+  IS S+DG VR+W
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVISCSMDGSVRLW 315
Query: 378 GVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITGTCHFY 418
            + +  ++  + V  V I A     DG+ + V  + G  + Y
Sbjct: 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 32/314 (10%)
Query: 117 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKK-----VKKLWKRIIS 171
           ++ + ++D++N  +      SNG+ ++   F+          + K     ++K W  +I 
Sbjct: 2   VLSQRQRDELNRAIADYL-RSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 172 MKKR--NVETCMSE-KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTL 228
           ++K+   +E+ ++E K +  S  P   K + K+   +  E  AL        H+  +  +
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL------SGHRSPVTRV 114
Query: 229 KFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFTD---DGGFGSNAXXXXXXXXXXXS 283
            F P    + S  ED  +++W   +     + K  TD   D  F  +            S
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-----S 169
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSMDKTVRMWQVGCNQC 342
           + + + + D  FQ  E  ++ +HGH  +V  ++   N ++++S S DKT++MW+V    C
Sbjct: 170 ADMTIKLWD--FQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 343 LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYI 400
           +  F  H  +V  V+ N  D     S S D  VR+W V  K    +  + R V+  I + 
Sbjct: 227 VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 401 PDGKGFIVGSITGT 414
           P+     +   TG+
Sbjct: 286 PESSYSSISEATGS 299

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 25/190 (13%)
Query: 199 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----- 253
           ++ N  K  +   L   + +  H G +  L++  D R + +G  D  VR+W V +     
Sbjct: 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207
Query: 254 -VAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKG-- 310
            +   C++                      S    + + D     + +  + L GH+   
Sbjct: 208 TLIHHCEAVLH--------LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259
Query: 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369
           +V+D    +  Y++S S D+T+++W    C     +  H   + C+Q+    D   +SGS
Sbjct: 260 NVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGS 313
Query: 370 IDGKVRIWGV 379
            D  +R+W +
Sbjct: 314 SDNTIRLWDI 323

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 69/238 (28%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 266
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 267 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--------ADVRDVIS 395
           +  D H+ V  + ++P      ISG         G  + ++V W        A+++   S
Sbjct: 315 SAVDAHSQVCSILWSP-HYKELISGH--------GFAQNQLVIWKYPTMAKVAELKGHTS 365
Query: 396 AICYI---PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI 450
            +  +   PDG      +   T   ++      +L+     +R+K S  K + I   I
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIHQGI 419

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 69/238 (28%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 277
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 278 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--------ADVRDVIS 395
           +  D H+ V  + ++P      ISG         G  + ++V W        A+++   S
Sbjct: 326 SAVDAHSQVCSILWSP-HYKELISGH--------GFAQNQLVIWKYPTMAKVAELKGHTS 376
Query: 396 AICYI---PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI 450
            +  +   PDG      +   T   ++      +L+     +R+K S  K + I   I
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIHQGI 430

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 307 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNP-IDD 362
           GH  DVL +A+S  N  ++S   D  +R+W V   C   L+   H ++V+CV+F+P +D 
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 363 NYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG 403
              +SG  D  V++W +   R+V D     + ++++   PDG
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 354
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 355 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 412 TG 413
            G
Sbjct: 267 RG 268

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 354
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 355 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 412 TG 413
            G
Sbjct: 267 RG 268

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 334
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 335 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 394 ISAICYIPD 402
           I+A+C+ P+
Sbjct: 259 INALCFSPN 267

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 334
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 335 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 394 ISAICYIPD 402
           I+A+C+ P+
Sbjct: 236 INALCFSPN 244

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 12/191 (6%)
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHV 286
           ++ +  +G YLA G     V++W V          +     GS +           S H 
Sbjct: 72  SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH- 130
Query: 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQC--- 342
              I     ++ E  +  L GH  +V  L W+ +  +L S   D  V +W     +    
Sbjct: 131 ---IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 343 -LNVF-DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAIC 398
            L  F  H   V  V + P   N   +G  + D  +RIW VC    +   D    + +I 
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
Query: 399 YIPDGKGFIVG 409
           + P  K  I G
Sbjct: 248 WSPHYKELISG 258

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 101/267 (37%), Gaps = 43/267 (16%)
Query: 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFTA--------------LYTSQEIQAHKGCIW 226
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--GGFGSNAXXXXXXXXXXXSS 284
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 285 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 337 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY 418
             I+AIC+ P+G  F  GS   TC  +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF 253

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 101/267 (37%), Gaps = 43/267 (16%)
Query: 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFTA--------------LYTSQEIQAHKGCIW 226
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--GGFGSNAXXXXXXXXXXXSS 284
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLLSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 285 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 337 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY 418
             I+AIC+ P+G  F  GS   TC  +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF 253

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 42/252 (16%)
Query: 196 KMEVKQNKKKCMEFTA--------------LYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 26  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 85
Query: 242 EDGVVRIWHVTSVAASCKSFTDD--GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 86  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 197 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 252
Query: 407 IVGSITGTCHFY 418
             GS   TC  +
Sbjct: 253 ATGSDDATCRLF 264

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 94/252 (37%), Gaps = 42/252 (16%)
Query: 196 KMEVKQNKKKCMEFTA--------------LYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 242 EDGVVRIWHVTSVAASCKSFTDD--GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCLNVFDHHN 350
              +E        L GH G +    + + N +++ S D T  +W +    Q      H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 407 IVGSITGTCHFY 418
             GS   TC  +
Sbjct: 242 ATGSDDATCRLF 253

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 94/252 (37%), Gaps = 42/252 (16%)
Query: 196 KMEVKQNKKKCMEFTA--------------LYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 242 EDGVVRIWHVTSVAASCKSFTDD--GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCLNVFDHHN 350
              +E        L GH G +    + + N +++ S D T  +W +    Q      H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 407 IVGSITGTCHFY 418
             GS   TC  +
Sbjct: 242 ATGSDDATCRLF 253

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFT--ALYTSQEIQAHKGCIWTLKFSPDGRYLAS 239
           S K K   E+ K + +E+ Q  ++        + T + ++ H   +  + +  D R + S
Sbjct: 22  SLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 81
Query: 240 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
             +DG V +W          SFT +                   S   +       +   
Sbjct: 82  SSQDGKVIVW---------DSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 300 SPL------------QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF 346
            PL            + +  H   +   +++NS+  +L+ S D T  +W V   Q L  F
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 347 DHHNY-VTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDG 403
             H   V C+   P +  N F+SG  D K  +W +   + V   +  +  ++++ Y P G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 404 KGFIVGSITGTCHFY 418
             F  GS   TC  Y
Sbjct: 253 DAFASGSDDATCRLY 267

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
           + +  H   +  +  S DG++  SG  DG +R+W + +  ++ +         S A    
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY---LLSCSMDKTV 332
                  S    + + + + + + +  +   GH+  V  + +S +     ++S S DKTV
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 333 RMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 391
           ++W +  C     +  H  YV+ V  +P D +   SG  DG V +W + E + +   +  
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 392 DVISAICYIPD 402
            VI A+C+ P+
Sbjct: 603 SVIHALCFSPN 613

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269
           T L+T   +Q H   +++L+F  DG ++ SG  D  +R+W V +   +C           
Sbjct: 270 TCLHT---LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--GNC----------- 311
Query: 270 NAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 329
                                           +  L GH+     +   + N L+S + D
Sbjct: 312 --------------------------------IHTLTGHQSLTSGMELKD-NILVSGNAD 338
Query: 330 KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
            TV++W +   QCL        H + VTC+QFN    N+ I+ S DG V++W
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358
           E+ L  L GH   V  L + +  +++S S+D ++R+W V    C++    H  +T     
Sbjct: 269 ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGM 325
Query: 359 PIDDNYFISGSIDGKVRIWGV 379
            + DN  +SG+ D  V+IW +
Sbjct: 326 ELKDNILVSGNADSTVKIWDI 346

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 45/164 (27%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
           AHK  I ++ + P    LA+G  D  V IW     A                        
Sbjct: 56  AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA------------------------ 91
Query: 280 XXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRMWQVG 338
                       D  F+++   L  + GH+ +V  +AWSN  Y L +CS DK+V +W+  
Sbjct: 92  ------------DRTFEMD--LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 339 CN----QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 377
            +    +C++V   H+  V  V ++P  +    S S D  VRIW
Sbjct: 138 ESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIW 180

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
           P + L GH   V DLA S  N + +S S DKT+R+W +        F  H + V  V F+
Sbjct: 68  PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 359 PIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 415
           P D+   +S   + ++++W   G C+    +  +  D +S + Y P  K      +    
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFA 184
Query: 416 HFYKASGND--LKLEKVDFHDR 435
            ++ + G D  LK+   +F  R
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR 206

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAXXXXXXXXXXXS 283
           W L ++P G  LAS G D  +RIW     +  CKS   +G   +               +
Sbjct: 20  WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-- 340
           S        +  Q +   +  L GH+ +V  +AW+ S N L +CS DK+V +W+V     
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 341 -QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRI 376
            +C++V + H   V  V ++P       S S D  V++
Sbjct: 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKL 176

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 308 HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-- 364
           H G VLD+ WS+  + + + S DKT +MW +  NQ + +  H   V  + +     NY  
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNYSC 143
Query: 365 FISGSIDGKVRIWGVCEK------RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHF 417
            ++GS D  ++ W           ++ +     DVI  +  +    +G IV  +      
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 418 YKASGNDLKLEK---VDFHDRK-KTSGNKITGIQGRISKNYDN 456
           ++   + LK +      F D++ K +G  +  I+GR++ +Y N
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 237 LASGGEDGVVRIWH-----VTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP 291
           +AS   DG VR+W      + +V  + + F +   + S              + VP+   
Sbjct: 32  VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
                  E PL  L GH+G+V  L++ +   ++S S DKT ++W+ G +   N+  H+  
Sbjct: 92  SG-----EDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKEG-SLVYNLQAHNAS 144
Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 410
           V   +     +N F++ S D  +++W   +K +  ++ +  DV+  +  + DG       
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG------- 196
Query: 411 ITGTCHFYKASGNDLKLEKVDFH 433
                HF   S ND  ++ VD H
Sbjct: 197 -----HFISCS-NDGLIKLVDXH 213

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 26/204 (12%)
Query: 220  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1051
Query: 280  XXXSSHVPVVIPD---EVFQIEESPLQ-ELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                S +     D   +V+ +    ++ +   H+G VL  A S ++    S S DKT ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 335  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 394  ----------ISAICYIPDGKGFI 407
                      ++ +C+ PD K  +
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV 1194

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 26/204 (12%)
Query: 220  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1058
Query: 280  XXXSSHVPVVIPD---EVFQIEESPLQ-ELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                S +     D   +V+ +    ++ +   H+G VL  A S ++    S S DKT ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 335  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 394  ----------ISAICYIPDGKGFI 407
                      ++ +C+ PD K  +
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV 1201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	465
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.79
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.68
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.59
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.58
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.57
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.56
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.54
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.54
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.52
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.51
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.51
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.5
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.49
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.49
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.48
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.45
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.44
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.41
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.39
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.38
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.29
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.28
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.28
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.28
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.23
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.15
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.15
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.14
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.06
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.05
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.04
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.03
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.97
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.97
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.97
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.96
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.94
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.92
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.91
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.91
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.83
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.8
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.79
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.74
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.74
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.57
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.56
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.45
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.41
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.23
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.08
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.02
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.9
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.74
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.57
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.56
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.3
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.26
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.25
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.01
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.73
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.69
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.63
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.57
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.43
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.37
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.3
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.29
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.27
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.18
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.18
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.88
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.83
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.8
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.49
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.36
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.29
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.21
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.98
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.95
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.68
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.15
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.12
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.99
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	93.02
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	92.96
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	91.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	91.29
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	90.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.28
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	89.96
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.44
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	89.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.11
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.0
3ott_A	758	Two-component system sensor histidine kinase; beta	87.74
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	84.99
2rr3_B	47	OSBP, oxysterol-binding protein 1; lipid transport	84.55
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.42
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.52
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.4
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	81.19

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-32  Score=272.73  Aligned_cols=329  Identities=19%  Similarity=0.310  Sum_probs=186.6

Q ss_pred             ccccccCCccceeccccccccCcceeeeecccc-cCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhcccccc--c
Q 012367          105 CFDREMDSEANCMVDELEQDQMNECVVTLEGES-NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETC--M  181 (465)
Q Consensus       105 ~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~  181 (465)
                      .+.||.++.++.|.++|++.+..+.+.+++.|. ........          ......+++.|..+++++++..+..  .
T Consensus         3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~----------~~~~~~~~~~w~~~~~l~~~~~~~~~~~   72 (410)
T 1vyh_C            3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELD----------KKYAGLLEKKWTSVIRLQKKVMELESKL   72 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchh----------hhhhchhhhhhhheeeHHHHHHHHHHHH
Confidence            467899999999999999998888887777664 21111111          1122345566676666654422211  1


Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF  261 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~  261 (465)
                      ......... ..+  .  ..........+.......+.+|.++|++++|+|++++||||+.||+|+|||+.++.......
T Consensus        73 ~~~~~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~  147 (410)
T 1vyh_C           73 NEAKEEFTS-GGP--L--GQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK  147 (410)
T ss_dssp             ------------------------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC
T ss_pred             HHHHHHHhc-cCC--c--cccCCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            111000000 000  0  11111111222333456788999999999999999999999999999999999876655443


Q ss_pred             cCCCCcccccCCCeEEeccCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC
Q 012367          262 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV  337 (465)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~  337 (465)
                      .+...+.      .+.+...+...+......  .+|++. ...+..+.+|...|.+++|+|++ +|++|+.|++|++||+
T Consensus       148 ~h~~~V~------~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          148 GHTDSVQ------DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             CCSSCEE------EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ccCCcEE------EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            3222211      122222111111111111  344443 35677889999999999999975 8999999999999999


Q ss_pred             CCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeC-------------
Q 012367          338 GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD-------------  402 (465)
Q Consensus       338 ~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spd-------------  402 (465)
                      .++.++..+ .|...|.++.|+| ++.+|++|+.|++|++||+.++.... +.+|...|.+++|+|+             
T Consensus       222 ~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          222 QTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             CCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence            999999988 5888999999999 99999999999999999999877654 7789999999999996             


Q ss_pred             -------CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          403 -------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       403 -------g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                             |.+|++|+.||+|++||+.++... ..+..      +...|+++.|+|+|.+      | ++++|+.
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~------h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVG------HDNWVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTEEE-EEEEC------CSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEEC------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence                   678999999999999999987643 23322      3468999999998765      4 3788875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=249.45  Aligned_cols=194  Identities=17%  Similarity=0.258  Sum_probs=164.2

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+.+|.+.|++|+|+|+|++||||+.||+|+|||+.++                                          
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------------------------------------------  159 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------------------------------------------  159 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------------------------------------
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------------------------------------
Confidence            35689999999999999999999999999999999874                                          


Q ss_pred             ecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCC
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                         +++..+.+|.+.|.+++|++++  +|++++.|++|++||+++++++..+.   +...+++++|+|.++++|++|+.|
T Consensus       160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence               3456778999999999999864  78999999999999999999888873   556799999999778899999999


Q ss_pred             CcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          372 GKVRIWGVCEKRVVD-WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       372 g~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      ++|+|||+++++.+. +.+|...|++++|+|+| ++|++|+.||+|+|||+.++++.  ..  .    .+...|++++|+
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~--~~--~----~H~~~V~~v~~s  308 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--RS--Q----AHRDFVRDATWS  308 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--EE--C----CCSSCEEEEEEC
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--EE--c----CCCCCEEEEEEe
Confidence            999999999877654 78899999999999998 57999999999999999887542  22  2    245789999999


Q ss_pred             ecCC-------ccc-eeeeecC
Q 012367          450 ISKN-------YDN-FRRFQTP  463 (465)
Q Consensus       450 p~gs-------~d~-~~~~~~p  463 (465)
                      |++.       +|+ +++|.+|
T Consensus       309 p~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          309 PLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             SSSTTEEEEEETTSCEEEEECC
T ss_pred             CCCCeEEEEEcCCCeEEEEECC
Confidence            8753       344 6777765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.8e-28  Score=239.90  Aligned_cols=253  Identities=15%  Similarity=0.235  Sum_probs=190.3

Q ss_pred             cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccC
Q 012367          193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK  272 (465)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~  272 (465)
                      ....+++|.....     .......+.+|...|++++|+|++.+++||+.|++|++||+.++..............    
T Consensus        56 ~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~----  126 (321)
T 3ow8_A           56 LDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW----  126 (321)
T ss_dssp             TTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC----
T ss_pred             CCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE----
Confidence            3455566643322     1123346789999999999999999999999999999999998876655443222111    


Q ss_pred             CCeEEeccCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-
Q 012367          273 EGKIKFGKKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-  347 (465)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-  347 (465)
                        .+.+.......+......  .+|.+. ......+..|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. 
T Consensus       127 --~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~  204 (321)
T 3ow8_A          127 --TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG  204 (321)
T ss_dssp             --CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             --EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence              111111111111111111  123332 34556778899999999999985 89999999999999999999999884 


Q ss_pred             CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      |...|++++|+| ++++|++|+.|++|+|||++++.... +.+|...|.+++|+|++++|++|+.||+|++||+.+++..
T Consensus       205 h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          205 HAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             CSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence            888999999999 99999999999999999999877664 7789999999999999999999999999999999887553


Q ss_pred             eeEeeecCcccccCCceeeEEEeecCC------cc-ceeeeecCC
Q 012367          427 LEKVDFHDRKKTSGNKITGIQGRISKN------YD-NFRRFQTPY  464 (465)
Q Consensus       427 ~~~~~~~~~~~~~~~~It~~~f~p~gs------~d-~~~~~~~p~  464 (465)
                      . .+..      +...|.++.|+|++.      .| .+++|+.|+
T Consensus       284 ~-~~~~------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p~  321 (321)
T 3ow8_A          284 H-TFFD------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI  321 (321)
T ss_dssp             E-EECC------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC-
T ss_pred             E-EEcC------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            2 2222      346899999999864      34 489999885

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.2e-28  Score=242.75  Aligned_cols=239  Identities=21%  Similarity=0.387  Sum_probs=182.8

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      +...+++.+|.++|++++|+|++++||||+.||+|+|||+.+.............+..      +.+.............
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~d  118 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT------CAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEE------EEECTTSSEEEEEETT
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEE------EEECCCCCEEEEEeCC
Confidence            3455788999999999999999999999999999999999887665544333222111      1111111111111111


Q ss_pred             C--ceeeecC-----CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367          292 D--EVFQIEE-----SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       292 ~--~~~~~~~-----~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~  363 (465)
                      .  .+|.+..     .....+.+|.+.|.++.|++++.+++++.|++|++||+.+++++..+ .|...|++++|+| +++
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~  197 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTR  197 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSS
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCC
Confidence            1  1222221     23456789999999999999999999999999999999999999888 4889999999999 999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +|++|+.|++|++||++++.... +.+|...|++++|+|++++|++|+.||+|++||+..++... .+...    .....
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~~----~~~~~  272 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHD----NIICG  272 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCT----TCCSC
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEccC----Ccccc
Confidence            99999999999999999887664 77899999999999999999999999999999998765432 22111    12346


Q ss_pred             eeeEEEeecCCc------c-ceeeeec
Q 012367          443 ITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       443 It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      |+++.|+|+|.+      | ++++|+.
T Consensus       273 v~~~~~s~~g~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          273 ITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEEEc
Confidence            999999998754      3 4777764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=2.1e-28  Score=244.81  Aligned_cols=246  Identities=24%  Similarity=0.393  Sum_probs=183.6

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc--CCCeEEeccCCCCcee
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA--KEGKIKFGKKKSSHVP  287 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  287 (465)
                      ..+.+.++|.+|.++|++++|+|++++||||+.||+|+|||+.+.............+....  ..+.............
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            34556788999999999999999999999999999999999998776655544333221111  1111111111111111


Q ss_pred             EecCCceeeec--------CCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe------cCCCc
Q 012367          288 VVIPDEVFQIE--------ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF------DHHNY  351 (465)
Q Consensus       288 ~~~~~~~~~~~--------~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~------~h~~~  351 (465)
                            +|.+.        ......+.+|.+.|.++.|+|+  ..|++|+.|++|++||+.+++++..+      .|...
T Consensus       134 ------iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          134 ------IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             ------EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             ------EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence                  22221        1234567899999999999985  37999999999999999999998877      37889


Q ss_pred             eEEEEEccCCCCEEEEEeCCCcEEEEeCCC-Ce-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE
Q 012367          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~  429 (465)
                      |.+++|+|.++++|++|+.|++|++||++. +. +..+.+|...|++++|+|+|++|++|+.||+|++||+.++.... .
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~-~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ-V  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE-E
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE-E
Confidence            999999987899999999999999999974 33 44578899999999999999999999999999999999876532 2


Q ss_pred             eeecC-cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          430 VDFHD-RKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       430 ~~~~~-~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      +..+. ........|+++.|+|+|.+      | .+++|++
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            22221 11122345899999998754      3 4677764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=3.5e-28  Score=235.59  Aligned_cols=237  Identities=18%  Similarity=0.262  Sum_probs=178.1

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+++.+|.+.|++++|+|+|++||+|+.||+|+|||+.++............+..      +.+.......+......
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA------GKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------EEEEGGGTEEEEEETTS
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEE------EEEeCCCCEEEEECCCC
Confidence            345678899999999999999999999999999999999987765554433322111      11111111111111111


Q ss_pred             --ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367          293 --EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       293 --~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fsp~~~~~l~  366 (465)
                        .+|++ ....+..+.+|.+.|.+++|+|++ +|++|+.|++|++||+.++ .+...+ .|...|++++|+|.++.+|+
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence              23333 245677899999999999999975 8999999999999999887 445555 58999999999997789999


Q ss_pred             EEeCCCcEEEEeCCCCeEE-e-cccCCCCeEEEEEee--CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          367 SGSIDGKVRIWGVCEKRVV-D-WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~-~-~~~~~~~V~sv~~sp--dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +|+.|++|++||+.++... . ..++...|..++|+|  ++.+|++|+.||+|++||+.+++.. ..+..      +...
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~~------h~~~  230 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-ATLEG------HMSN  230 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-EEEEC------CSSC
T ss_pred             EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-eeeCC------CCCC
Confidence            9999999999999775433 2 345668899999987  7789999999999999999987543 23333      3467


Q ss_pred             eeeEEEeecCC------cc-ceeeeec
Q 012367          443 ITGIQGRISKN------YD-NFRRFQT  462 (465)
Q Consensus       443 It~~~f~p~gs------~d-~~~~~~~  462 (465)
                      |+.+.|+|++.      .| ++++|+.
T Consensus       231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          231 VSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            99999999853      34 4788875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=6.9e-28  Score=238.89  Aligned_cols=239  Identities=19%  Similarity=0.330  Sum_probs=179.9

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...++|.+|.++|++|+|+|++++|||||.||+|+|||..+.........+...+      ..+.+...+...+......
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v------~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV------MACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC------CEEEECTTSSEEEEESTTS
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCE------EEEEECCCCCEEEEeeCCC
Confidence            4567889999999999999999999999999999999998766554443322211      1111111111111111111


Q ss_pred             c--eeeec-------CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-
Q 012367          293 E--VFQIE-------ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI-  360 (465)
Q Consensus       293 ~--~~~~~-------~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~-  360 (465)
                      .  +|.+.       ......+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+ .|...|.+++|+|. 
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  208 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE  208 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence            1  12111       13456678899999999999975 8999999999999999999999988 58899999999883 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc
Q 012367          361 DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~  439 (465)
                      ++++|++|+.|++|++||+++++.+. +..|...|++++|+|++..|++|+.||+|++||++...... .+..+    ..
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~~----~~  283 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSKE----SI  283 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCT----TC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcCC----Cc
Confidence            36899999999999999999987765 67899999999999999999999999999999998764321 22111    12


Q ss_pred             CCceeeEEEeecCCc------c-ceeeeec
Q 012367          440 GNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       440 ~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ...++.+.|+|++.+      | ++++|++
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence            346889999998754      3 4788875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=9.6e-28  Score=242.63  Aligned_cols=237  Identities=16%  Similarity=0.341  Sum_probs=181.7

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.............+.      .+.+..............
T Consensus       141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~------~v~~~p~~~~l~s~s~D~  214 (410)
T 1vyh_C          141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS------SVSIMPNGDHIVSASRDK  214 (410)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE------EEEECSSSSEEEEEETTS
T ss_pred             cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE------EEEEeCCCCEEEEEeCCC
Confidence            34567889999999999999999999999999999999988765544332222211      111211111111111111


Q ss_pred             --ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC------
Q 012367          293 --EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID------  361 (465)
Q Consensus       293 --~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~------  361 (465)
                        .+|++ ...++..+.+|...|.+++++|++ +|++|+.|++|++||+.++.+...+ .|...|.+++|+|..      
T Consensus       215 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  294 (410)
T 1vyh_C          215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS  294 (410)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred             eEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence              13333 245677889999999999999975 8999999999999999999998888 588999999999921      


Q ss_pred             -------------CCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          362 -------------DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       362 -------------~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                                   +.+|++|+.|++|++||++++..+. +.+|...|++++|+|+|++|++|+.||+|++||+.+++.. 
T Consensus       295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~-  373 (410)
T 1vyh_C          295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM-  373 (410)
T ss_dssp             GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC-
T ss_pred             hhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE-
Confidence                         6799999999999999999887664 7789999999999999999999999999999999876542 


Q ss_pred             eEeeecCcccccCCceeeEEEeecCC------ccc-eeeeec
Q 012367          428 EKVDFHDRKKTSGNKITGIQGRISKN------YDN-FRRFQT  462 (465)
Q Consensus       428 ~~~~~~~~~~~~~~~It~~~f~p~gs------~d~-~~~~~~  462 (465)
                      ..+..|      ...|+++.|+|++.      .|+ +++|+.
T Consensus       374 ~~~~~h------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          374 KTLNAH------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEECC------SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEcCC------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            233333      36799999999854      344 666653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=1.8e-27  Score=230.66  Aligned_cols=199  Identities=29%  Similarity=0.573  Sum_probs=169.7

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .....++.+|.++|++++|+|+|++||+|+.||+|++|++.++.                                    
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------------------------------   56 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------------------------   56 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------------------------------
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc------------------------------------
Confidence            34456788999999999999999999999999999999987632                                    


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                               ....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|.+++|+| ++++|++|+
T Consensus        57 ---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~  126 (312)
T 4ery_A           57 ---------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS  126 (312)
T ss_dssp             ---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred             ---------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEe
Confidence                     244567899999999999975 8999999999999999999998888 4889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      .|+.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||+.+++.......      .....++.+.|
T Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~  200 (312)
T 4ery_A          127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID------DDNPPVSFVKF  200 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC------SSCCCEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec------cCCCceEEEEE
Confidence            99999999999887664 677899999999999999999999999999999988765332211      12357888999


Q ss_pred             eecCCc------c-ceeeeec
Q 012367          449 RISKNY------D-NFRRFQT  462 (465)
Q Consensus       449 ~p~gs~------d-~~~~~~~  462 (465)
                      +|++.+      | .+++|+.
T Consensus       201 ~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          201 SPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             CTTSSEEEEEETTTEEEEEET
T ss_pred             CCCCCEEEEEcCCCeEEEEEC
Confidence            988654      3 3677765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=9.2e-28  Score=236.96  Aligned_cols=200  Identities=26%  Similarity=0.422  Sum_probs=165.0

Q ss_pred             cchhhhccCCC-cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          213 YTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       213 ~~~~~l~~H~~-~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .+.+++.+|.+ .|++++|+|+|++||||+.|++|+|||+.+....+.                                
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------------------   53 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------------------   53 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------------------
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------------------
Confidence            45577889988 999999999999999999999999999876432110                                


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC--eEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~--~~l~~~-~h~~~V~~i~fsp~~~~~l~s  367 (465)
                                .....+|...|.+++|+|++ +|++|+.|++|++||+..+  .++..+ .|...|++++|+| ++++|++
T Consensus        54 ----------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s  122 (345)
T 3fm0_A           54 ----------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLAT  122 (345)
T ss_dssp             ----------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             ----------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEE
Confidence                      11235799999999999975 8999999999999999876  456666 5899999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCcccccCCc
Q 012367          368 GSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNK  442 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~  442 (465)
                      |+.|++|++||+.++.    +..+.+|...|.+++|+|++++|++|+.||+|++||+..+..... .+..      +...
T Consensus       123 ~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~------h~~~  196 (345)
T 3fm0_A          123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG------HEST  196 (345)
T ss_dssp             EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC------CSSC
T ss_pred             EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC------CCCc
Confidence            9999999999998653    224678999999999999999999999999999999988754322 3322      3468


Q ss_pred             eeeEEEeecCCc------c-ceeeee
Q 012367          443 ITGIQGRISKNY------D-NFRRFQ  461 (465)
Q Consensus       443 It~~~f~p~gs~------d-~~~~~~  461 (465)
                      |+++.|+|+|.+      | ++++|+
T Consensus       197 v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          197 VWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEec
Confidence            999999998654      4 377776

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=1.8e-27  Score=229.71  Aligned_cols=199  Identities=19%  Similarity=0.323  Sum_probs=162.1

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.+|.+.|++++|+|+|++||||+.|++|+||++....                                        
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------   42 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------   42 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------------------
Confidence            3567999999999999999999999999999999986421                                        


Q ss_pred             eecCCcceeeeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEEEE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  367 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l~s  367 (465)
                         .+++..+.+|.+.|.+++|++   +.+|+||+.|++|++||+.++.  .+..+ .|...|.+++|+| +  +.+|++
T Consensus        43 ---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s  118 (297)
T 2pm7_B           43 ---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV  118 (297)
T ss_dssp             ---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred             ---cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence               134667889999999999985   3599999999999999998874  45555 4889999999999 6  789999


Q ss_pred             EeCCCcEEEEeCCCCe---EEecccCCCCeEEEEEeeC-------------CCEEEEEEcCCcEEEEEecCCceeee-Ee
Q 012367          368 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLE-KV  430 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~---~~~~~~~~~~V~sv~~spd-------------g~~l~sgs~dG~v~iwd~~~~~~~~~-~~  430 (465)
                      |+.|++|++||++++.   ...+.+|...|.+++|+|+             +++|++|+.||+|++||+.++..... ..
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~  198 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence            9999999999998753   3456789999999999997             57999999999999999987653222 11


Q ss_pred             eecCcccccCCceeeEEEeecC---------Cccc-eeeeec
Q 012367          431 DFHDRKKTSGNKITGIQGRISK---------NYDN-FRRFQT  462 (465)
Q Consensus       431 ~~~~~~~~~~~~It~~~f~p~g---------s~d~-~~~~~~  462 (465)
                      .+.+    +...|.+++|+|++         +.|+ +++|+.
T Consensus       199 ~l~~----H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          199 TLEG----HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             EECC----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             EecC----CCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence            2222    45789999999974         3353 677764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=1.3e-27  Score=233.16  Aligned_cols=203  Identities=20%  Similarity=0.343  Sum_probs=171.6

Q ss_pred             ccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      +....+|.+|.++|++++|+|++ ++|+||+.|++|++|++......                                 
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------------------------------   53 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------------------------------   53 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence            34456789999999999999965 79999999999999998642110                                 


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                             ...++..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+ .|...|.+++|+| ++.+|++|
T Consensus        54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~  125 (319)
T 3frx_A           54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG  125 (319)
T ss_dssp             -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence                   013467788999999999999975 8999999999999999999999888 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeC------CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spd------g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +.|++|++||++...+..+.+|...|.+++|+|.      +..|++|+.||.|++||+...+... .+.      .+...
T Consensus       126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~------~h~~~  198 (319)
T 3frx_A          126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFI------GHNSN  198 (319)
T ss_dssp             ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-EEC------CCCSC
T ss_pred             eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eec------CCCCc
Confidence            9999999999998888888999999999999995      4589999999999999998765432 221      24578


Q ss_pred             eeeEEEeecCCc------c-ceeeeec
Q 012367          443 ITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       443 It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      |+++.|+|++.+      | .+++|+.
T Consensus       199 v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          199 INTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            999999998754      4 4778875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=2.3e-27  Score=252.19  Aligned_cols=206  Identities=21%  Similarity=0.297  Sum_probs=158.8

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee--eeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC--KSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      .....+.+|.+.|++++|+|+|++||||+.||+|+|||+.+.....  ........+      ..+.+...+...+....
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v------~~v~fs~dg~~l~~~~~  123 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV------KDISWDSESKRIAAVGE  123 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE------EEEEECTTSCEEEEEEC
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce------EEEEECCCCCEEEEEEC
Confidence            3456788999999999999999999999999999999996543221  111111111      11122211111111111


Q ss_pred             CC----ceeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCC
Q 012367          291 PD----EVFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD  362 (465)
Q Consensus       291 ~~----~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~  362 (465)
                      ..    .++.+ .......+.+|...|.+++|+|++  .|++|+.|++|++||..+++++..+ .|...|++++|+| ++
T Consensus       124 ~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg  202 (611)
T 1nr0_A          124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DG  202 (611)
T ss_dssp             CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TS
T ss_pred             CCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CC
Confidence            00    11111 234566788999999999999975  6999999999999999999998888 5999999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEecc--------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          363 NYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~~~~~~--------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ++|++|+.|++|++||+.+++.....        +|...|.+++|+|+|++|++|+.||+|++||+.+++.
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            99999999999999999888766532        7999999999999999999999999999999987754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=5.3e-27  Score=228.95  Aligned_cols=241  Identities=18%  Similarity=0.287  Sum_probs=184.5

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (465)
                      +.+.+.+|...|++++|+|+|++|+||+.|++|+|||+.++............+..      +.+.............. 
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~------~~~~~~~~~l~s~s~D~~  130 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS------VDIDKKASMIISGSRDKT  130 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------EEECTTSCEEEEEETTSC
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEE------EEEcCCCCEEEEEeCCCe
Confidence            34678899999999999999999999999999999999998776555443332221      11111111111111111 


Q ss_pred             -ceeeecCCcceeeeccccceEEEEecCCC-------EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367          293 -EVFQIEESPLQELHGHKGDVLDLAWSNSN-------YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-------~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~  363 (465)
                       .+|++....+..+.+|...|.+++|+|..       .+++++.|++|++||+.++++...+ .|...|++++|+| +++
T Consensus       131 i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~  209 (319)
T 3frx_A          131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT  209 (319)
T ss_dssp             EEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSS
T ss_pred             EEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCC
Confidence             34666677788899999999999999742       7999999999999999999988887 6999999999999 999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE-eeecCcccccCCc
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNK  442 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~  442 (465)
                      +|++|+.|++|+|||+.+++.+....+...|.+++|+|++.+|++++.+ .+++|++....+.... ..+.+....+...
T Consensus       210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPH  288 (319)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcc
Confidence            9999999999999999999888766677889999999999999988765 5999999876543221 1122222334567


Q ss_pred             eeeEEEeecCCc------c-ceeeeec
Q 012367          443 ITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       443 It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      +.++.|+|+|.+      | .+++|++
T Consensus       289 v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          289 AVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             eeEEEECCCCCEEEEeecCceEEEEEE
Confidence            899999999764      4 3778875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=4.1e-27  Score=231.71  Aligned_cols=226  Identities=19%  Similarity=0.342  Sum_probs=170.6

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee----eeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ..+.+..|.+.|.+++|+|+|++||+|+.|+.|++|++.+....    .........+..      +.+... .......
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~-~~l~s~s  161 (340)
T 1got_B           89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDD-NQIVTSS  161 (340)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEE------EEEEET-TEEEEEE
T ss_pred             cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEE------EEECCC-CcEEEEE
Confidence            44567789999999999999999999999999999999764321    111111111110      111110 1111111


Q ss_pred             cCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCE
Q 012367          290 IPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       290 ~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~  364 (465)
                      ...  .+|++. ..++..+.+|.+.|.+++|+|++ ++++|+.|++|++||++++.++..+ .|...|++++|+| ++++
T Consensus       162 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~  240 (340)
T 1got_B          162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNA  240 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCE
Confidence            111  233432 45667888999999999999975 8999999999999999999999888 5889999999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEecccC---CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367          365 FISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~  441 (465)
                      |++|+.|++|++||+++++.+....+   ...|++++|+|+|++|++|+.||.|++||+.+.+.. ..+..      +..
T Consensus       241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~~~~------h~~  313 (340)
T 1got_B          241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA-GVLAG------HDN  313 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEEC------CSS
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe-eEeec------CCC
Confidence            99999999999999998876654333   347999999999999999999999999999876543 23322      346


Q ss_pred             ceeeEEEeecCCc
Q 012367          442 KITGIQGRISKNY  454 (465)
Q Consensus       442 ~It~~~f~p~gs~  454 (465)
                      .|+++.|+|+|.+
T Consensus       314 ~v~~~~~s~dg~~  326 (340)
T 1got_B          314 RVSCLGVTDDGMA  326 (340)
T ss_dssp             CEEEEEECTTSSC
T ss_pred             cEEEEEEcCCCCE
Confidence            8999999998643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=1.2e-26  Score=228.60  Aligned_cols=236  Identities=16%  Similarity=0.331  Sum_probs=171.0

Q ss_pred             cchhhhccCCCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEecCCcee-------eeeeecCCCCcccccCCCeEEec
Q 012367          213 YTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAA-------SCKSFTDDGGFGSNAKEGKIKFG  279 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~f-----sp-dg~~LaSgs~Dg~V~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  279 (465)
                      ...++|.+|.+.|++++|     ++ ++++||||+.|++|+|||+.+...       ......+...+      ..+.+.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V------~~~~~~   85 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV------SDLALS   85 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCE------EEEEEC
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCce------EEEEEC
Confidence            445778999999999999     77 899999999999999999975421       11111111111      111222


Q ss_pred             cCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe---cCCCce
Q 012367          280 KKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYV  352 (465)
Q Consensus       280 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V  352 (465)
                      ......+......  .+|++. .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.........   .|...|
T Consensus        86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            1111111111111  234442 45677889999999999999975 8999999999999999844333333   488899


Q ss_pred             EEEEEccCCC----------CEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          353 TCVQFNPIDD----------NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       353 ~~i~fsp~~~----------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .+++|+| ++          .+|++++.|+.|++||........+.+|...|++++|+|+|++|++|+.||.|++||+..
T Consensus       166 ~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          166 SCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999 55          799999999999999966555556888999999999999999999999999999999965


Q ss_pred             CceeeeEeeecCcccccCCceeeEEEeecCCc------cceeeeec
Q 012367          423 NDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------DNFRRFQT  462 (465)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d~~~~~~~  462 (465)
                      .......+.       ....|+.++|+|++.+      +++++|+.
T Consensus       245 ~~~~~~~~~-------~~~~v~~v~~sp~~~~la~~~d~~v~iw~~  283 (343)
T 2xzm_R          245 LTYPQREFD-------AGSTINQIAFNPKLQWVAVGTDQGVKIFNL  283 (343)
T ss_dssp             CSSCSEEEE-------CSSCEEEEEECSSSCEEEEEESSCEEEEES
T ss_pred             Ccccceeec-------CCCcEEEEEECCCCCEEEEECCCCEEEEEe
Confidence            443332221       1246999999998643      35777764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=225.48  Aligned_cols=234  Identities=15%  Similarity=0.318  Sum_probs=175.2

Q ss_pred             hhhccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeee--cCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          216 QEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSF--TDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      +.+++|.++|++++|+|+    +.+||||+.|++|+||++..........  .....+.      .+.+...........
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~------~~~~~~~~~~l~s~s   99 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV------SVDISHTLPIAASSS   99 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE------EEEECSSSSEEEEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE------EEEECCCCCEEEEEe
Confidence            456799999999999985    5699999999999999997655432211  1111111      111111111111111


Q ss_pred             cCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCE
Q 012367          290 IPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       290 ~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~  364 (465)
                      ...  .+|++. .+.+..+.+|...+.+++|+|++ +|++++.|++|++||+.+++....+ .|...|.+++|+| ++++
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~  178 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKY  178 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCE
Confidence            111  233332 45667788899999999999985 8999999999999999999888777 4778999999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367          365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I  443 (465)
                      |++|+.|+.|++||+.+++.+. +.+|...|++++|+|++++|++|+.||.|++||+....... .+..      +...|
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~------h~~~v  251 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG-TLSG------HASWV  251 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE-EECC------CSSCE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE-EEcC------CCCce
Confidence            9999999999999999988765 67899999999999999999999999999999998776532 2222      34679


Q ss_pred             eeEEEeecCCc------c-ceeeeecC
Q 012367          444 TGIQGRISKNY------D-NFRRFQTP  463 (465)
Q Consensus       444 t~~~f~p~gs~------d-~~~~~~~p  463 (465)
                      ++++|+|++.+      | ++++|++.
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            99999998653      4 47788753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=1.3e-26  Score=224.52  Aligned_cols=190  Identities=22%  Similarity=0.348  Sum_probs=159.8

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      .....+.+|.+.|++++|+|++++|+||+.||+|++||+.+..                                     
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------------------------------------  130 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------------------------------  130 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------------------------------------
T ss_pred             cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------------------------------------
Confidence            3456778999999999999999999999999999999987531                                     


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccC-CCCEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFIS  367 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~-~~~~l~s  367 (465)
                             .....+.+|...|.+++|+|.  ..|++|+.|++|++||+.++.+...+  .|...|.++.|+|. ++.+|++
T Consensus       131 -------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  203 (304)
T 2ynn_A          131 -------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (304)
T ss_dssp             -------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred             -------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence                   123456789999999999984  48999999999999999888766665  36678999999873 5679999


Q ss_pred             EeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      |+.|++|++||+++++.+. +.+|...|.+++|+|++++|++|+.||+|++||+.+.++.. .+..      +...+..+
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~------~~~~~~~~  276 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK-TLNV------GLERSWCI  276 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-EECC------SSSSEEEE
T ss_pred             EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-eccC------CCccEEEE
Confidence            9999999999999987665 78899999999999999999999999999999999876532 3322      23578888


Q ss_pred             EEeecCC
Q 012367          447 QGRISKN  453 (465)
Q Consensus       447 ~f~p~gs  453 (465)
                      .|+|++.
T Consensus       277 ~~~~~~~  283 (304)
T 2ynn_A          277 ATHPTGR  283 (304)
T ss_dssp             EECTTCG
T ss_pred             EECCCCC
Confidence            8888754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=2.8e-26  Score=227.28  Aligned_cols=186  Identities=23%  Similarity=0.361  Sum_probs=160.3

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.+|.+.|.+++|+|++.+|+||+.||+|++||+.++                                         
T Consensus       148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-----------------------------------------  186 (354)
T 2pbi_B          148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-----------------------------------------  186 (354)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----------------------------------------
T ss_pred             eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-----------------------------------------
Confidence            456789999999999999999999999999999999864                                         


Q ss_pred             eecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                          +++..+.+|...|.+++|+|+   .+|++|+.|++|++||+++++++..+ .|...|++++|+| ++++|++|+.|
T Consensus       187 ----~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D  261 (354)
T 2pbi_B          187 ----QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDD  261 (354)
T ss_dssp             ----CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             ----eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCC
Confidence                345667799999999999873   48999999999999999999999988 5889999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367          372 GKVRIWGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      ++|++||++++..+....   +...+++++|+|+|++|++|+.||+|++||+.++... ..+.      .+...|+++.|
T Consensus       262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~------~h~~~v~~l~~  334 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV-SILF------GHENRVSTLRV  334 (354)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEEC------CCSSCEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE-EEEE------CCCCcEEEEEE
Confidence            999999999887655332   3357899999999999999999999999999877543 2222      24478999999


Q ss_pred             eecCCc
Q 012367          449 RISKNY  454 (465)
Q Consensus       449 ~p~gs~  454 (465)
                      +|+|.+
T Consensus       335 spdg~~  340 (354)
T 2pbi_B          335 SPDGTA  340 (354)
T ss_dssp             CTTSSC
T ss_pred             CCCCCE
Confidence            998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.4e-26  Score=225.42  Aligned_cols=199  Identities=21%  Similarity=0.311  Sum_probs=154.7

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      +.+.+++.+|.++|++++|+|+  +||||+.|++|++|++.....                                   
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----------------------------------   46 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----------------------------------   46 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----------------------------------
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------
Confidence            3455778899999999999988  999999999999999875311                                   


Q ss_pred             CceeeecCCcceee-e-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-------CeEeEEe-cCCCceEEEEEccC
Q 012367          292 DEVFQIEESPLQEL-H-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPI  360 (465)
Q Consensus       292 ~~~~~~~~~~~~~~-~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-------~~~l~~~-~h~~~V~~i~fsp~  360 (465)
                              .....+ . +|...|.+++|+|++ +|++|+.|++|+|||+..       ..++..+ .|...|++++|+| 
T Consensus        47 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-  117 (330)
T 2hes_X           47 --------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-  117 (330)
T ss_dssp             --------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-
T ss_pred             --------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-
Confidence                    112222 2 399999999999975 899999999999999853       3456666 5999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-C---eE-EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee-eEeeecC
Q 012367          361 DDNYFISGSIDGKVRIWGVCE-K---RV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHD  434 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~-~---~~-~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~-~~~~~~~  434 (465)
                      ++++|++|+.|++|+|||+.. +   +. ..+.+|...|++++|+|++.+|++|+.||+|++||+..+.... ..+..  
T Consensus       118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~--  195 (330)
T 2hes_X          118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG--  195 (330)
T ss_dssp             TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC--
Confidence            999999999999999999943 2   23 3477899999999999999999999999999999998764322 23322  


Q ss_pred             cccccCCceeeEEEeecC--------Ccc-ceeeeec
Q 012367          435 RKKTSGNKITGIQGRISK--------NYD-NFRRFQT  462 (465)
Q Consensus       435 ~~~~~~~~It~~~f~p~g--------s~d-~~~~~~~  462 (465)
                          +...|.++.|+|++        +.| ++++|+.
T Consensus       196 ----h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          196 ----HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             ----CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             ----CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence                34678999998872        234 4677763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=6.1e-26  Score=221.18  Aligned_cols=248  Identities=18%  Similarity=0.302  Sum_probs=172.0

Q ss_pred             cchhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceee----------------eeeecCCCC-cccccCCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAAS----------------CKSFTDDGG-FGSNAKEG  274 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~----------------~~~~~~~~~-~~~~~~~~  274 (465)
                      .+..+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+....                ...+.+... +.....++
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            445678999999999999997 689999999999999998764321                111111111 11111112


Q ss_pred             eEEeccCCC-----------------------CceeEe-cCCc--eeeecC--CcceeeeccccceEEEEecCC---CEE
Q 012367          275 KIKFGKKKS-----------------------SHVPVV-IPDE--VFQIEE--SPLQELHGHKGDVLDLAWSNS---NYL  323 (465)
Q Consensus       275 ~~~~~~~~~-----------------------~~~~~~-~~~~--~~~~~~--~~~~~~~gh~~~V~~l~~s~~---~~l  323 (465)
                      .+..+....                       ...... ....  +|+...  .......+|...|..++|+++   .++
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  188 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII  188 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence            111111100                       000000 0111  122211  122345678999999999875   378


Q ss_pred             EEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeC
Q 012367          324 LSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD  402 (465)
Q Consensus       324 ~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spd  402 (465)
                      ++++.|++|++||+.+++++..+ .|...|++++|+| ++++|++|+.|+.|++||+++.+.+....+...|.+++|+|+
T Consensus       189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  267 (340)
T 4aow_A          189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN  267 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred             EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCC
Confidence            99999999999999999998888 5899999999999 999999999999999999999998887777889999999998


Q ss_pred             CCEEEEEEcCCcEEEEEecCCceeeeEe--eecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          403 GKGFIVGSITGTCHFYKASGNDLKLEKV--DFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       403 g~~l~sgs~dG~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      +. +++++.||.|++||+.+........  ........+...|+++.|+|+|.+      | .+++|++
T Consensus       268 ~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          268 RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            85 4566679999999998876533211  111112335678999999998654      4 3788874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=5.5e-26  Score=220.75  Aligned_cols=167  Identities=17%  Similarity=0.335  Sum_probs=142.9

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+.+.+|.+.|++|+|+|++++||+|+.||+|+|||+.+....                                     
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------------------------------   46 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-------------------------------------   46 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-------------------------------------
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-------------------------------------
Confidence            3556799999999999999999999999999999999863211                                     


Q ss_pred             eeecCCcceeeeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCC---------eEeEEe-cCCCceEEEEEccCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPID  361 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~---------~~l~~~-~h~~~V~~i~fsp~~  361 (465)
                          ......+.+|...|.+++|+|   +.+|++++.|++|++||+.++         +++..+ .|...|.+++|+| +
T Consensus        47 ----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  121 (351)
T 3f3f_A           47 ----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-A  121 (351)
T ss_dssp             ----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-G
T ss_pred             ----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-C
Confidence                023556778999999999998   459999999999999999886         556666 5889999999999 7


Q ss_pred             --CCEEEEEeCCCcEEEEeCCCCe--------------------------------------------------------
Q 012367          362 --DNYFISGSIDGKVRIWGVCEKR--------------------------------------------------------  383 (465)
Q Consensus       362 --~~~l~sgs~Dg~I~iwd~~~~~--------------------------------------------------------  383 (465)
                        +++|++++.|+.|++||+++++                                                        
T Consensus       122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~  201 (351)
T 3f3f_A          122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD  201 (351)
T ss_dssp             GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred             CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence              9999999999999999986532                                                        


Q ss_pred             -----EEecccCCCCeEEEEEeeCC----CEEEEEEcCCcEEEEEecCC
Q 012367          384 -----VVDWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       384 -----~~~~~~~~~~V~sv~~spdg----~~l~sgs~dG~v~iwd~~~~  423 (465)
                           ...+.+|...|++++|+|++    ++|++|+.||.|++||+...
T Consensus       202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence                 22345688899999999998    89999999999999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=4.6e-26  Score=226.05  Aligned_cols=202  Identities=14%  Similarity=0.152  Sum_probs=155.2

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeE-ecCCc--e
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV-VIPDE--V  294 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~  294 (465)
                      ..+|.+.|++|+|+|+|++|++|+.||+|+|||+.++............+.      .+.+.......... .....  +
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~------~v~~s~~~~~~~~s~~~dg~v~~  208 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN------CVAACPGKDTIFLSCGEDGRILL  208 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------EEEECTTCSSCEEEEETTSCEEE
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE------EEEEccCCCceeeeeccCCceEE
Confidence            458999999999999999999999999999999998877655543322221      11222121111111 11111  2


Q ss_pred             eeec-CCccee--eeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          295 FQIE-ESPLQE--LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       295 ~~~~-~~~~~~--~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                      |++. .++...  +..|...|.+++|+|+  .+|++|+.|++|++||+++++++..+ .|...|++++|+|.++++|++|
T Consensus       209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg  288 (357)
T 4g56_B          209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI  288 (357)
T ss_dssp             CCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred             EECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence            3322 233332  3457788999999986  38899999999999999999999888 4888999999999445789999


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCce
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.|++|+|||+.+++++...+|...|++++|+| ++++|++|+.||+|++|++.....
T Consensus       289 s~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          289 SEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             ETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             eCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            999999999999999999889999999999999 899999999999999999976543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=4.2e-27  Score=229.37  Aligned_cols=189  Identities=21%  Similarity=0.300  Sum_probs=148.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.+|.++|++++|+|+|++||||+.|++|+|||+.++..                                       
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------   47 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------   47 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence            45679999999999999999999999999999999875321                                       


Q ss_pred             eecCCcceeeeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEEEE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  367 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l~s  367 (465)
                          ..+..+.+|.+.|.+++|++   +.+|++|+.|++|++||+.++.  ++..+ .|...|++++|+| +  +.+|++
T Consensus        48 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las  122 (316)
T 3bg1_A           48 ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC  122 (316)
T ss_dssp             ----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred             ----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence                12456789999999999975   3589999999999999999874  45555 5889999999999 5  789999


Q ss_pred             EeCCCcEEEEeCCCCe-E---EecccCCCCeEEEEEeeC-----------------CCEEEEEEcCCcEEEEEecCCcee
Q 012367          368 GSIDGKVRIWGVCEKR-V---VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~-~---~~~~~~~~~V~sv~~spd-----------------g~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      |+.|++|++||+..+. .   ....+|...|.+++|+|+                 +++|++|+.||+|++||+......
T Consensus       123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  202 (316)
T 3bg1_A          123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW  202 (316)
T ss_dssp             ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence            9999999999998753 1   235678899999999998                 478999999999999999754211


Q ss_pred             eeEeeecCcccccCCceeeEEEeecC
Q 012367          427 LEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       427 ~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      .....+    ..+...|.++.|+|++
T Consensus       203 ~~~~~l----~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          203 KEEQKL----EAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             EEEECC----BCCSSCEEEEECCCCS
T ss_pred             ceeeec----ccCCCceEEEEecCCC
Confidence            111112    2245789999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=6.9e-26  Score=218.65  Aligned_cols=205  Identities=20%  Similarity=0.296  Sum_probs=160.9

Q ss_pred             chhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          214 TSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ..+++.+|.++|++++|+|+  |++||||+.||+|+|||+.++..                                   
T Consensus        45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-----------------------------------   89 (297)
T 2pm7_B           45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-----------------------------------   89 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-----------------------------------
T ss_pred             EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-----------------------------------
Confidence            34678899999999999874  89999999999999999875321                                   


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeE--eEEe-cCCCceEEEEEccC-----
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNPI-----  360 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~--l~~~-~h~~~V~~i~fsp~-----  360 (465)
                              ..+..+.+|...|.+++|+|+   .+|++++.|++|++||++++..  ...+ .|...|.+++|+|.     
T Consensus        90 --------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           90 --------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             --------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             --------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence                    234456689999999999985   4899999999999999987632  2333 68899999999993     


Q ss_pred             -------CCCEEEEEeCCCcEEEEeCCCCe----E-EecccCCCCeEEEEEeeCC---CEEEEEEcCCcEEEEEecCCce
Q 012367          361 -------DDNYFISGSIDGKVRIWGVCEKR----V-VDWADVRDVISAICYIPDG---KGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       361 -------~~~~l~sgs~Dg~I~iwd~~~~~----~-~~~~~~~~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                             ++++|++|+.|++|+|||++++.    . ..+.+|...|.+++|+|++   .+|++|+.||+|++||+.....
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                   15799999999999999997654    3 3477899999999999985   8999999999999999987542


Q ss_pred             eeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeecC
Q 012367          426 KLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQTP  463 (465)
Q Consensus       426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~p  463 (465)
                      +.....+.  ...+...|.++.|+|++.+      | .+++|...
T Consensus       242 ~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          242 PWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            22111111  1123467999999998654      3 37888754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.8e-26  Score=222.64  Aligned_cols=201  Identities=25%  Similarity=0.429  Sum_probs=151.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      +|.+.|++++|+|++++||+|+.|++|+||++.......                                      ...
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~--------------------------------------~~~   97 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT--------------------------------------FEM   97 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------------------------CCC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc--------------------------------------ccc
Confidence            499999999999999999999999999999986421000                                      001


Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC----CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~----~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      .++..+.+|...|.+++|+|++ +|++|+.|++|++||+..    .+++..+ .|...|++++|+| ++++|++|+.|++
T Consensus        98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  176 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT  176 (330)
T ss_dssp             EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred             eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence            2456678999999999999975 899999999999999943    2566666 5889999999999 9999999999999


Q ss_pred             EEEEeCCCC--e-EEecccCCCCeEEEEEeeC--CCEEEEEEcCCcEEEEEecCCce----eee-EeeecCcccccCCce
Q 012367          374 VRIWGVCEK--R-VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDL----KLE-KVDFHDRKKTSGNKI  443 (465)
Q Consensus       374 I~iwd~~~~--~-~~~~~~~~~~V~sv~~spd--g~~l~sgs~dG~v~iwd~~~~~~----~~~-~~~~~~~~~~~~~~I  443 (465)
                      |++||..++  + +..+.+|...|.+++|+|+  +..|++|+.||+|++||+.+...    ... ...+.   ..+...|
T Consensus       177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~---~~h~~~v  253 (330)
T 2hes_X          177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP---DVHKRQV  253 (330)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC---SCCSSCE
T ss_pred             EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc---cccccce
Confidence            999998765  2 3457889999999999998  77899999999999999975421    001 11111   1144679


Q ss_pred             eeEEEeecC-----Ccc-ceeeeec
Q 012367          444 TGIQGRISK-----NYD-NFRRFQT  462 (465)
Q Consensus       444 t~~~f~p~g-----s~d-~~~~~~~  462 (465)
                      .++.|++++     +.| .+++|+.
T Consensus       254 ~~v~~s~~~~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          254 YNVAWGFNGLIASVGADGVLAVYEE  278 (330)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEEEE
T ss_pred             EEEEEcCCCEEEEEeCCCEEEEEEc
Confidence            999887653     234 4677763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=9.8e-26  Score=239.62  Aligned_cols=242  Identities=16%  Similarity=0.232  Sum_probs=171.7

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee------------ecCCCCcccccCCCeEEeccCC
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS------------FTDDGGFGSNAKEGKIKFGKKK  282 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  282 (465)
                      .+.+.+|.+.|++++|+|+|++|+||+.|++|++||+.++......            +..............+.++...
T Consensus       317 ~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          317 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence            4567899999999999999999999999999999999876543221            1111111111122222222111


Q ss_pred             CC----------------ceeEecCCc----------eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEE
Q 012367          283 SS----------------HVPVVIPDE----------VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMW  335 (465)
Q Consensus       283 ~~----------------~~~~~~~~~----------~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lW  335 (465)
                      ..                ......++.          +..+....+..+ .|...+.+++|+|++ +|++|+.|++|++|
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lw  475 (611)
T 1nr0_A          397 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVY  475 (611)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence            00                000011111          101111113333 377889999999986 89999999999999


Q ss_pred             eCCCCeE--eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeEEe---cccCCCCeEEEEEeeCCCEEEEE
Q 012367          336 QVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD---WADVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       336 D~~~~~~--l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~~~---~~~~~~~V~sv~~spdg~~l~sg  409 (465)
                      |+.++..  +....|...|++++|+| ++++|++++.|++|++||+.+ +++..   +..|...|++++|+|||++|++|
T Consensus       476 d~~~~~~~~~~~~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasg  554 (611)
T 1nr0_A          476 KLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG  554 (611)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             EccCCceeeeeccCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEE
Confidence            9987653  34457999999999999 999999999999999999987 65543   23499999999999999999999


Q ss_pred             EcCCcEEEEEecCCceee-eEeeecCccccc-CCceeeEEEeecCC-----cc-ceeeeecCC
Q 012367          410 SITGTCHFYKASGNDLKL-EKVDFHDRKKTS-GNKITGIQGRISKN-----YD-NFRRFQTPY  464 (465)
Q Consensus       410 s~dG~v~iwd~~~~~~~~-~~~~~~~~~~~~-~~~It~~~f~p~gs-----~d-~~~~~~~p~  464 (465)
                      +.||+|++|++.++.... ....      .+ ...|+++.|+|++.     .| ++++|+.||
T Consensus       555 s~D~~v~lW~~~~~~~~~~~~~~------~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~~  611 (611)
T 1nr0_A          555 SLDNSVIVWNMNKPSDHPIIIKG------AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF  611 (611)
T ss_dssp             ETTSCEEEEETTCTTSCCEEETT------SSTTSCEEEEEEEETTEEEEEETTSCEEEEECCC
T ss_pred             ECCCcEEEEECCCcccccchhhc------cCcccCeeEEEEcCCCEEEEecCCCCEEEEeccC
Confidence            999999999998765322 2211      23 46899999999753     33 589999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=1.1e-26  Score=236.44  Aligned_cols=200  Identities=13%  Similarity=0.153  Sum_probs=161.0

Q ss_pred             hhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          215 SQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      .+...+|...|+||+|+| ++++||+|+.||+|+|||+.+...                                     
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-------------------------------------  154 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-------------------------------------  154 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-------------------------------------
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-------------------------------------
Confidence            345568999999999999 567999999999999999976422                                     


Q ss_pred             eeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEE
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sg  368 (465)
                            .....+.+|.+.|++|+|+| + ++|+||+.|++|++||++++.......   +...+.+++|+| ++.+|++|
T Consensus       155 ------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g  227 (435)
T 4e54_B          155 ------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTG  227 (435)
T ss_dssp             ------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEE
T ss_pred             ------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEE
Confidence                  12334568999999999997 3 499999999999999998765544443   344688999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~  447 (465)
                      +.||.|++||+++..+..+.+|...|++++|+|++. +|++|+.||.|++||++..+.......    ...+...|+++.
T Consensus       228 ~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~~~  303 (435)
T 4e54_B          228 DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----SLPHRHPVNAAC  303 (435)
T ss_dssp             CSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----CCBCSSCEEECC
T ss_pred             eCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----eeecccccccee
Confidence            999999999998887777889999999999999986 688999999999999987654322111    122457899999


Q ss_pred             EeecCCc------c-ceeeeec
Q 012367          448 GRISKNY------D-NFRRFQT  462 (465)
Q Consensus       448 f~p~gs~------d-~~~~~~~  462 (465)
                      |+|+|.+      | .+++|+.
T Consensus       304 ~spdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          304 FSPDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             BCTTSSEEEEEESSSCEEEEES
T ss_pred             ECCCCCeeEEEcCCCEEEEEEC
Confidence            9998654      3 3777765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=4e-26  Score=225.49  Aligned_cols=171  Identities=15%  Similarity=0.160  Sum_probs=141.5

Q ss_pred             ccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ..+.+.+.+|.+.|++++|+|++. +|+||+.||+|+|||+.+++.....                              
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~------------------------------  208 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI------------------------------  208 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC------------------------------
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee------------------------------
Confidence            345577889999999999999985 8999999999999999875332110                              


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCC-CEEE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD-NYFI  366 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~-~~l~  366 (465)
                                   ....|...+.+++|+|+  .+|++|+.|++|++||+++++++..+ .|...|++++|+| ++ ++|+
T Consensus       209 -------------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~la  274 (344)
T 4gqb_B          209 -------------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLA  274 (344)
T ss_dssp             -------------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEE
T ss_pred             -------------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEE
Confidence                         11245667899999985  38899999999999999999999988 5899999999999 65 7899


Q ss_pred             EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCcee
Q 012367          367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +|+.|++|+|||+.++++..+.+|.+.|++++|+|+++ +|++|+.||+|++|++.+..++
T Consensus       275 sgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          275 SLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             EEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             EEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            99999999999999999999999999999999999986 5678999999999999876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=5e-26  Score=224.48  Aligned_cols=200  Identities=24%  Similarity=0.371  Sum_probs=159.2

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ..+|.+.|++++|+|+|++||+|+.|++|+||++.....                                         
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-----------------------------------------   95 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-----------------------------------------   95 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----------------------------------------
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----------------------------------------
Confidence            368999999999999999999999999999999875321                                         


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe---EeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~---~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                        ..+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++.   ++..+ .|...|.+++|+| ++++|++|+.|+
T Consensus        96 --~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~  172 (345)
T 3fm0_A           96 --ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD  172 (345)
T ss_dssp             --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTS
T ss_pred             --EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCC
Confidence              2345677999999999999975 99999999999999998763   45555 5889999999999 999999999999


Q ss_pred             cEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee--------Ee-eecCcccccC
Q 012367          373 KVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KV-DFHDRKKTSG  440 (465)
Q Consensus       373 ~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~--------~~-~~~~~~~~~~  440 (465)
                      +|++||+.++..   ..+.+|...|++++|+|+|++|++|+.||+|++|+.........        .. ........+.
T Consensus       173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  252 (345)
T 3fm0_A          173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS  252 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred             cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence            999999988753   35788999999999999999999999999999999743221100        00 0000001144


Q ss_pred             CceeeEEEeecCCc-------cceeeee
Q 012367          441 NKITGIQGRISKNY-------DNFRRFQ  461 (465)
Q Consensus       441 ~~It~~~f~p~gs~-------d~~~~~~  461 (465)
                      ..|.++.|+|++.+       ..+++|+
T Consensus       253 ~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          253 RTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            67999999887543       3467775

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=3.7e-25  Score=222.21  Aligned_cols=242  Identities=22%  Similarity=0.372  Sum_probs=172.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc------------cccCCCeEEeccCCCCcee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG------------SNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  287 (465)
                      +|.+.|++++|+|+|++||+|+ |++++||++.++..............            .......+.+...+...+.
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 78999999988766544322211000            0000112222222222222


Q ss_pred             EecCCc--eeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC
Q 012367          288 VVIPDE--VFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       288 ~~~~~~--~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~  363 (465)
                      ......  +|++. .+.+..+.+|...|.+++|+|++ +|++++.|++|++||++++++...+.+...|.+++|+|.+++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence            222222  34443 34567788999999999999975 899999999999999999999999999999999999998899


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-c-------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE-e----
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVD-W-------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-V----  430 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~-~-------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~-~----  430 (465)
                      +|++|+.|+.|++||+.++..+. +       .+|...|++++|+|+|++|++|+.||+|++||+......... .    
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~  300 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  300 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence            99999999999999999887654 2       468899999999999999999999999999999864332110 0    


Q ss_pred             eecCcccccCCceeeEEEeecCCc------cc-eeeeec
Q 012367          431 DFHDRKKTSGNKITGIQGRISKNY------DN-FRRFQT  462 (465)
Q Consensus       431 ~~~~~~~~~~~~It~~~f~p~gs~------d~-~~~~~~  462 (465)
                      ........+...|.++.|+|++.+      |+ +++|+.
T Consensus       301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            000011124467899999887643      43 677764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=3.4e-26  Score=228.78  Aligned_cols=255  Identities=19%  Similarity=0.354  Sum_probs=176.5

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee-------eeecCC
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-------KSFTDD  264 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~-------~~~~~~  264 (465)
                      .....+++|..       ......+.+.+|...|.+++|+|+|++||+|+.|+.|+||++.+.....       ....+.
T Consensus        85 s~D~~v~iWd~-------~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~  157 (380)
T 3iz6_a           85 SQDGRLIVWNA-------LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK  157 (380)
T ss_dssp             ETTSEEEEEET-------TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred             eCCCeEEEEEC-------CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence            34455665542       2233456778999999999999999999999999999999987532110       000011


Q ss_pred             CCcccccCCCeEEeccCCCCceeEecCC---ceeeec-CCcceee-----eccccceEEEEecC-C-CEEEEEeCCCeEE
Q 012367          265 GGFGSNAKEGKIKFGKKKSSHVPVVIPD---EVFQIE-ESPLQEL-----HGHKGDVLDLAWSN-S-NYLLSCSMDKTVR  333 (465)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-----~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~  333 (465)
                      ..+..      +.+.............+   .+|++. ...+..+     .+|...|.+++|++ + ++|++|+.|++|+
T Consensus       158 ~~v~~------~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          158 GYASS------CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             SCCCC------CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             cceEE------EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            10100      01111111111111111   123322 2233333     57999999999986 3 5999999999999


Q ss_pred             EEeCC-CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-ccC-------CCCeEEEEEeeCC
Q 012367          334 MWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADV-------RDVISAICYIPDG  403 (465)
Q Consensus       334 lWD~~-~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~-------~~~V~sv~~spdg  403 (465)
                      +||++ .+.++..+ .|...|++++|+| ++++|++|+.|++|++||++++..+.. ..+       ...|++++|+|+|
T Consensus       232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          232 LWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             EEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred             EEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence            99998 45677777 5999999999999 999999999999999999999876652 222       2358999999999


Q ss_pred             CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC------ccc-eeeeecC
Q 012367          404 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN------YDN-FRRFQTP  463 (465)
Q Consensus       404 ~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs------~d~-~~~~~~p  463 (465)
                      ++|++|+.||.|++||+..++.....   ......+...|+++.|+|+|.      .|+ +++|+..
T Consensus       311 ~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLLAEMVLNL---GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SEEEEECTTSCEEEEETTTCCEEEEE---CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CEEEEEECCCCEEEEECCCCceEEEE---ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            99999999999999999877654322   111223567899999999854      454 6777753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.3e-25  Score=220.05  Aligned_cols=201  Identities=20%  Similarity=0.344  Sum_probs=164.8

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      +.+.+.+|.++|++++|+|++++||+|+.||.|+||++.....                                     
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------   45 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------------------   45 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------------------------
Confidence            3467889999999999999999999999999999999874211                                     


Q ss_pred             eeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEE
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYF  365 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l  365 (465)
                            ..+..+.+|...|.+++|+++   .+|++++.|++|++||+.+++  .+..+ .|...|.+++|+| +  +++|
T Consensus        46 ------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l  118 (379)
T 3jrp_A           46 ------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL  118 (379)
T ss_dssp             ------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred             ------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence                  235567789999999999864   599999999999999999987  55555 4889999999999 7  8999


Q ss_pred             EEEeCCCcEEEEeCCCC---eEEecccCCCCeEEEEEee-------------CCCEEEEEEcCCcEEEEEecCCceeee-
Q 012367          366 ISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLE-  428 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~sp-------------dg~~l~sgs~dG~v~iwd~~~~~~~~~-  428 (465)
                      ++++.|+.|++||+.+.   .......|...|++++|+|             ++..|++|+.||.|++||+.++..... 
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence            99999999999999876   3445678999999999999             699999999999999999987654332 


Q ss_pred             EeeecCcccccCCceeeEEEeec---CCc------c-ceeeeec
Q 012367          429 KVDFHDRKKTSGNKITGIQGRIS---KNY------D-NFRRFQT  462 (465)
Q Consensus       429 ~~~~~~~~~~~~~~It~~~f~p~---gs~------d-~~~~~~~  462 (465)
                      ...+.    .+...|+++.|+|+   +.+      | .+++|+.
T Consensus       199 ~~~~~----~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          199 ESTLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             EEEEC----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             EEEEe----cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence            22222    24478999999998   433      3 3677764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=3.3e-26  Score=227.20  Aligned_cols=204  Identities=9%  Similarity=0.089  Sum_probs=158.1

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+.+.+|.+.|++++|+|++++||+|+.||+|+|||+.+...                                    
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------------------   89 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------------------   89 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C------------------------------------
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc------------------------------------
Confidence            45577889999999999999999999999999999999986430                                    


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe---EeEEe-c-CCCceEEEEEccCCCCEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-D-HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~---~l~~~-~-h~~~V~~i~fsp~~~~~l~  366 (465)
                            ..+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++   +...+ . |...|++++|+| ++++|+
T Consensus        90 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  162 (377)
T 3dwl_C           90 ------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLA  162 (377)
T ss_dssp             ------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEE
T ss_pred             ------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEE
Confidence                  12345566899999999999975 89999999999999999887   36666 3 899999999999 999999


Q ss_pred             EEeCCCcEEEEeCC------------------CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          367 SGSIDGKVRIWGVC------------------EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       367 sgs~Dg~I~iwd~~------------------~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      +|+.|+.|++||+.                  .++++...+|...|++++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            99999999999985                  244444338999999999999999999999999999999998876322


Q ss_pred             EeeecCcccccCCceeeEEEeecCC------ccceeeeec
Q 012367          429 KVDFHDRKKTSGNKITGIQGRISKN------YDNFRRFQT  462 (465)
Q Consensus       429 ~~~~~~~~~~~~~~It~~~f~p~gs------~d~~~~~~~  462 (465)
                      .+   .....+...|+++.|+|++.      .+.+++|+.
T Consensus       243 ~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          243 AL---ITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG  279 (377)
T ss_dssp             EC---CCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred             ee---EeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence            11   01122446899999999864      355666654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=1.2e-24  Score=214.11  Aligned_cols=239  Identities=16%  Similarity=0.239  Sum_probs=167.7

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--  292 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (465)
                      ...+.+|.+.|++++|+|++.+|+||+.|++|++||+.++............+..      +.+.......+......  
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~------v~~sp~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS------VAFSPDNRQILSAGAEREI  142 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE------EEECSSTTEEEEEETTSCE
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE------EEECCCCCEEEEEcCCCEE
Confidence            4567899999999999999999999999999999999987766554433322211      11111111111111111  


Q ss_pred             ceeeecCCcceee---eccccceEEEEecCC-----------CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEE
Q 012367          293 EVFQIEESPLQEL---HGHKGDVLDLAWSNS-----------NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQF  357 (465)
Q Consensus       293 ~~~~~~~~~~~~~---~gh~~~V~~l~~s~~-----------~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~f  357 (465)
                      .+|++........   .+|...|.+++|+|+           .+|++++.|++|++||. .......+ .|...|++++|
T Consensus       143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEE
T ss_pred             EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEE
Confidence            1233332222222   378999999999986           38999999999999995 45565565 68999999999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecC-
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHD-  434 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~-  434 (465)
                      +| ++++|++|+.|+.|++||+. .........+...|.+++|+|+++++++| .|+.|++|++.+.+.... .+.... 
T Consensus       222 s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~  299 (343)
T 2xzm_R          222 SP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI  299 (343)
T ss_dssp             CT-TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG
T ss_pred             CC-CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc
Confidence            99 99999999999999999994 34343444456679999999999887655 578899999987654321 222110 


Q ss_pred             ----cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          435 ----RKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       435 ----~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                          ....+...|+++.|+|+|.+      | .+++|+.
T Consensus       300 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence                01234567999999998653      4 3677764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=9.3e-25  Score=211.47  Aligned_cols=166  Identities=29%  Similarity=0.521  Sum_probs=148.9

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+.+.+|...|++++|+|++++|++|+.||.|++||+.+.                                       
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---------------------------------------   97 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---------------------------------------   97 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------------------------------------
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---------------------------------------
Confidence            34567899999999999999999999999999999999864                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                            +.+..+.+|...|.+++|+|+ .+|++|+.|++|++||+++++++..+. |...|.+++|+| ++++|++|+.|
T Consensus        98 ------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  170 (312)
T 4ery_A           98 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD  170 (312)
T ss_dssp             ------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             ------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCC
Confidence                  235567789999999999997 499999999999999999999988884 888999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          372 GKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       372 g~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.|++||+++++.+.  ...+...+..++|+|++++|++++.||.|++||+.+++.
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            999999999887665  345667899999999999999999999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=7.7e-26  Score=224.46  Aligned_cols=198  Identities=19%  Similarity=0.296  Sum_probs=151.2

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeC------CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ..+|.+.|++|+|||||++|||||.      |+.|++|+..++...                                  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----------------------------------   83 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----------------------------------   83 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence            3479999999999999999999998      677888877653221                                  


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEE-----ecCCCceEEEEEccCCCCEEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~-----~~h~~~V~~i~fsp~~~~~l~  366 (465)
                             ........+|...|.+++|+|++.+++++.||+|+|||+.+++++..     ..|...|++++|+| ++++|+
T Consensus        84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~  155 (357)
T 4g56_B           84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV  155 (357)
T ss_dssp             -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred             -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence                   11233445788999999999999999999999999999988765432     25889999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      +|+.|+.|++||+.+++.+. +.+|...|++++|+|++. .+++++.||+|++||+.+++.... +..    ..+...++
T Consensus       156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~~----~~~~~~v~  230 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-IDF----CASDTIPT  230 (357)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CCC----TTCCSCEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-eee----cccccccc
Confidence            99999999999999988765 778999999999999885 789999999999999987765322 111    12346789


Q ss_pred             eEEEeecCC-------cc-ceeeeec
Q 012367          445 GIQGRISKN-------YD-NFRRFQT  462 (465)
Q Consensus       445 ~~~f~p~gs-------~d-~~~~~~~  462 (465)
                      ++.|+|++.       .| .+++|++
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~  256 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNI  256 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEES
T ss_pred             chhhhhcccceEEEeecccceeEEEC
Confidence            999998743       23 3677764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=6.5e-24  Score=206.08  Aligned_cols=230  Identities=15%  Similarity=0.271  Sum_probs=178.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee--eeeecCCCCcccccCCCeEEeccCCCCceeEecCCc--ee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS--CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE--VF  295 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  295 (465)
                      +|.+.|++++|+|++++|++|+.||.|++||+.+....  .........+.      .+.+.............+.  +|
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~l~~~~~dg~v~~~  168 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY------ALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE------EEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE------EEEECCCCCEEEEEeCCCcEEEE
Confidence            79999999999999999999999999999999886532  22222211111      1111111111111111121  23


Q ss_pred             ee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          296 QI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       296 ~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      ++ ..+++..+.+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| +++++++++.|+.
T Consensus       169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~  247 (337)
T 1gxr_A          169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSN  247 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCc
Confidence            33 235567788899999999999975 89999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       374 I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      |++||+.++.......|...|.+++|+|++++|++++.||.|++||+.+++.... .       .+...|+++.|+|++.
T Consensus       248 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~-------~~~~~v~~~~~s~~~~  319 (337)
T 1gxr_A          248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-S-------KESSSVLSCDISVDDK  319 (337)
T ss_dssp             EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-E-------ECSSCEEEEEECTTSC
T ss_pred             EEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-e-------cCCCcEEEEEECCCCC
Confidence            9999999999888889999999999999999999999999999999998766422 1       1346799999999865


Q ss_pred             c------c-ceeeeecCC
Q 012367          454 Y------D-NFRRFQTPY  464 (465)
Q Consensus       454 ~------d-~~~~~~~p~  464 (465)
                      +      | .+++|+.-|
T Consensus       320 ~l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          320 YIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             EEEEEETTSCEEEEEEEC
T ss_pred             EEEEecCCCeEEEEEEeC
Confidence            4      3 367776543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=6.3e-25  Score=215.73  Aligned_cols=193  Identities=21%  Similarity=0.397  Sum_probs=159.4

Q ss_pred             cccchhhhccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspd---g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      +....+.+.+|.+.|++|+|+|+   |++||+|+.||.|+|||+.+...                               
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------------   76 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------------   76 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------------
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------------
Confidence            44455678899999999999999   69999999999999999986211                               


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEE--ccCCCCE
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNY  364 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~f--sp~~~~~  364 (465)
                                  .....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++....|...|++++|  +| ++++
T Consensus        77 ------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~  143 (368)
T 3mmy_A           77 ------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSC  143 (368)
T ss_dssp             ------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEE
T ss_pred             ------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCE
Confidence                        1125567899999999999975 899999999999999999999998899999999999  88 8899


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEe----------------------------------------------------------
Q 012367          365 FISGSIDGKVRIWGVCEKRVVD----------------------------------------------------------  386 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~----------------------------------------------------------  386 (465)
                      |++++.|+.|++||+++++.+.                                                          
T Consensus       144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (368)
T 3mmy_A          144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD  223 (368)
T ss_dssp             EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred             EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence            9999999999999987643110                                                          


Q ss_pred             ---------------------------------cccCCC------------CeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          387 ---------------------------------WADVRD------------VISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       387 ---------------------------------~~~~~~------------~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                                                       +..|..            .|++++|+|++++|++|+.||.|++||+.
T Consensus       224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence                                             011222            59999999999999999999999999999


Q ss_pred             CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +++.. ..+.      .+...|+++.|+|+|.+
T Consensus       304 ~~~~~-~~~~------~~~~~v~~~~~s~~g~~  329 (368)
T 3mmy_A          304 ARTKL-KTSE------QLDQPISACCFNHNGNI  329 (368)
T ss_dssp             TTEEE-EECC------CCSSCEEEEEECTTSSC
T ss_pred             CCcEE-EEec------CCCCCceEEEECCCCCe
Confidence            87553 2222      23468999999999765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=2e-24  Score=215.15  Aligned_cols=209  Identities=12%  Similarity=0.133  Sum_probs=159.0

Q ss_pred             cccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeec--CCCCcccccC---CCeEEeccCCCC
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFT--DDGGFGSNAK---EGKIKFGKKKSS  284 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~  284 (465)
                      .....+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+.........  ....+.....   .....+......
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            444556788999999999999999 8999999999999999997665544321  1111111111   011111111111


Q ss_pred             ceeEecCCceeeecCCcceeeecc---ccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEcc
Q 012367          285 HVPVVIPDEVFQIEESPLQELHGH---KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNP  359 (465)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~gh---~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp  359 (465)
                      ..      .+|++....+..+..|   ...|.+++|+|++ +|++++.|++|++||+. ++++..+ .|...|.+++|+|
T Consensus       142 ~i------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          142 AT------TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             EE------EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS
T ss_pred             EE------EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC
Confidence            11      2344445555555544   4889999999975 99999999999999994 6666666 5999999999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEeCCC----CeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceee
Q 012367          360 IDDN-YFISGSIDGKVRIWGVCE----KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       360 ~~~~-~l~sgs~Dg~I~iwd~~~----~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                       ++. +|++|+.|+.|++||+++    +.++...+|...|++++|+| +|++|++++.||.|++||+.+.+...
T Consensus       215 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          215 -RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             -SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             -CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence             777 999999999999999987    66776668999999999999 99999999999999999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=2.7e-24  Score=225.58  Aligned_cols=222  Identities=23%  Similarity=0.398  Sum_probs=169.4

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--c
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--E  293 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  293 (465)
                      +.+.+|...|++++|+|+|++||+|+.||.|++|+... ............+      ..+.+...+...+......  .
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~~~~v------~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSV------RGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEEEEECCSSCE------EEEEECTTSSCEEEEETTSEEE
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEEEecCCCCCe------EEEEECCCCCEEEEEeCCCEEE
Confidence            55679999999999999999999999999999999654 3332222221111      1122222221111111111  2


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      +|+...+.+..+.+|...|.+++|+|++ +|++++.|++|++||.. ++++..+ .|...|++++|+| ++++|++++.|
T Consensus       411 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d  488 (577)
T 2ymu_A          411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD  488 (577)
T ss_dssp             EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT-TSCEEEEEETT
T ss_pred             EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCC
Confidence            3444566778889999999999999975 89999999999999975 5555555 6999999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      +.|++||.....+..+.+|...|++++|+|+|++|++|+.||.|++||..+..  +..+..      +...|+++.|+|+
T Consensus       489 ~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~--~~~~~~------h~~~v~~~~fs~d  560 (577)
T 2ymu_A          489 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTG------HSSSVWGVAFSPD  560 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCE--EEEEEC------CSSCEEEEEECTT
T ss_pred             CEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCE--EEEEcC------CCCCEEEEEEcCC
Confidence            99999997666666688999999999999999999999999999999975432  223332      4478999999999


Q ss_pred             CCc
Q 012367          452 KNY  454 (465)
Q Consensus       452 gs~  454 (465)
                      |.+
T Consensus       561 g~~  563 (577)
T 2ymu_A          561 GQT  563 (577)
T ss_dssp             SSC
T ss_pred             CCE
Confidence            765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-24  Score=214.24  Aligned_cols=197  Identities=22%  Similarity=0.385  Sum_probs=166.4

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ....+.+|.++|++++|+|+|++||+|+.||.|+|||+.++                                       
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------------------------------------   64 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---------------------------------------   64 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---------------------------------------
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---------------------------------------
Confidence            34567899999999999999999999999999999998864                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-  371 (465)
                            +.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++|+| +++++++++.+ 
T Consensus        65 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~  137 (369)
T 3zwl_B           65 ------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNV  137 (369)
T ss_dssp             ------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEECCB
T ss_pred             ------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecCCc
Confidence                  3355677899999999999975 99999999999999999999999999999999999999 99999999999 


Q ss_pred             ----CcEEEEeCCCCe------------EEecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeec
Q 012367          372 ----GKVRIWGVCEKR------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  433 (465)
Q Consensus       372 ----g~I~iwd~~~~~------------~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~  433 (465)
                          +.|++||+....            ......+..  .+.+++|+|+++.|++|+.||.|++||+.+.......+..+
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  217 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH  217 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred             cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence                999999996542            222344544  89999999999999999999999999999854444444433


Q ss_pred             CcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          434 DRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       434 ~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                            ...|+++.|+|++.+      | .+++|+.
T Consensus       218 ------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          218 ------EKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             ------SSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ------CCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence                  367999999998653      3 3667764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2.3e-24  Score=216.75  Aligned_cols=231  Identities=18%  Similarity=0.320  Sum_probs=176.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec-
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  298 (465)
                      .|.+.|++++|+|++++||+|+.||.|++||+.+.............+......+...+........      .+|++. 
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i------~i~d~~~  205 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAI------HHHDVRI  205 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEE------EEEETTS
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCE------EEEeccc
Confidence            3899999999999999999999999999999998776655443333222221111111111111111      123332 


Q ss_pred             -CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe--CCCc
Q 012367          299 -ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGK  373 (465)
Q Consensus       299 -~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs--~Dg~  373 (465)
                       ...+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.++.++..+ .|...|.+++|+|....++++|+  .|+.
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          206 ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence             34577888999999999999975 8999999999999999999988888 58899999999995567778776  7999


Q ss_pred             EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE--cCCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEee
Q 012367          374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       374 I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs--~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      |++||+.+++.+....+...|++++|+|+++.+++++  .||.|++||+.++..... .+..      +...|+++.|+|
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~------h~~~v~~~~~s~  359 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA------HDTRVLYSALSP  359 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC------CSSCCCEEEECT
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC------CCCCEEEEEECC
Confidence            9999999998888777888999999999999999954  899999999998765433 2322      346899999999


Q ss_pred             cCCc------c-ceeeeec
Q 012367          451 SKNY------D-NFRRFQT  462 (465)
Q Consensus       451 ~gs~------d-~~~~~~~  462 (465)
                      ++.+      | .+++|+.
T Consensus       360 dg~~l~s~~~dg~i~iw~~  378 (401)
T 4aez_A          360 DGRILSTAASDENLKFWRV  378 (401)
T ss_dssp             TSSEEEEECTTSEEEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEEC
Confidence            8643      4 3677765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=4.2e-25  Score=222.33  Aligned_cols=199  Identities=23%  Similarity=0.354  Sum_probs=161.5

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+.+.+|.+.|++++|+|++++|++|+.||+|++||+.++                                      
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--------------------------------------  171 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--------------------------------------  171 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------------------------------
T ss_pred             ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------------------------------
Confidence            344566799999999999999999999999999999999863                                      


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEE-----------
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQ-----------  356 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~-----------  356 (465)
                             +.+..+.+|...|.+++|+|++ +|++++.|++|++||+++++++..+.    +...|.+++           
T Consensus       172 -------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  244 (420)
T 3vl1_A          172 -------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE  244 (420)
T ss_dssp             -------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred             -------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee
Confidence                   3355677899999999999975 89999999999999999999998884    444555555           


Q ss_pred             ----------EccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCC
Q 012367          357 ----------FNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       357 ----------fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~  423 (465)
                                |+| ++++|++|+.||.|++||+++++...  ...|...|++++|+|++. +|++|+.||.|++||+.++
T Consensus       245 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          245 ISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             GCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             cccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence                      467 88999999999999999999877554  345788999999999999 9999999999999999987


Q ss_pred             ceeeeEeeecCcccccCCceeeEEEeec-----CCcc-ceeeeec
Q 012367          424 DLKLEKVDFHDRKKTSGNKITGIQGRIS-----KNYD-NFRRFQT  462 (465)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~-----gs~d-~~~~~~~  462 (465)
                      +.++..+..+.     ...|+.+.+.++     ++.| .+++|+.
T Consensus       324 ~~~~~~~~~~~-----~~~v~~~~~~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          324 ECPVGEFLINE-----GTPINNVYFAAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             TSCSEEEEEST-----TSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred             cCchhhhhccC-----CCCceEEEeCCCCEEEEecCCccEEEEec
Confidence            66555554432     246666644322     3444 4778874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=9.2e-25  Score=219.46  Aligned_cols=204  Identities=19%  Similarity=0.310  Sum_probs=168.5

Q ss_pred             hhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          215 SQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ...+.+|.+.|++++|+| ++++||+|+.||+|+||++.+......                                  
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~----------------------------------  119 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP----------------------------------  119 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC----------------------------------
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc----------------------------------
Confidence            356789999999999999 999999999999999999987432110                                  


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEE
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                          ...++..+.+|...|.+++|+|++  +|++++.|++|++||+.+++++..+   .|...|++++|+| ++++|+++
T Consensus       120 ----~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  194 (402)
T 2aq5_A          120 ----LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTS  194 (402)
T ss_dssp             ----BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEE
T ss_pred             ----cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEE
Confidence                114567788999999999999974  8999999999999999999999888   3888999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEe-c-ccCCCC-eEEEEEeeCCCEEEEE---EcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          369 SIDGKVRIWGVCEKRVVD-W-ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~-~-~~~~~~-V~sv~~spdg~~l~sg---s~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                      +.|+.|++||+++++.+. + ..|... +.+++|+|++++|++|   +.||.|++||+.+...+.......     +...
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~  269 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSSG  269 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCSS
T ss_pred             ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCCc
Confidence            999999999999988776 3 467665 8999999999999999   789999999999876544333222     2356


Q ss_pred             eeeEEEeecCCc-------c-ceeeeec
Q 012367          443 ITGIQGRISKNY-------D-NFRRFQT  462 (465)
Q Consensus       443 It~~~f~p~gs~-------d-~~~~~~~  462 (465)
                      +..+.|+|++.+       | .+++|+.
T Consensus       270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          270 VLLPFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             CEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence            888888887543       3 3666664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=1.6e-24  Score=217.55  Aligned_cols=184  Identities=23%  Similarity=0.391  Sum_probs=151.6

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      .....+.+|.+.|++++|+|++++|++|+.|++|++||+.++...                                   
T Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-----------------------------------  200 (393)
T 1erj_A          156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-----------------------------------  200 (393)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------------------------------
T ss_pred             cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-----------------------------------
Confidence            345678899999999999999999999999999999999875432                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEe--------cCCCceEEEEEccCCC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPIDD  362 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~--------~h~~~V~~i~fsp~~~  362 (465)
                                ..+ .|...|.+++|+| + .+|++|+.|++|++||+.++.++..+        .|...|++++|+| ++
T Consensus       201 ----------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g  268 (393)
T 1erj_A          201 ----------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DG  268 (393)
T ss_dssp             ----------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TS
T ss_pred             ----------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CC
Confidence                      111 2456789999998 5 48999999999999999999887766        4788999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe-------------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE
Q 012367          363 NYFISGSIDGKVRIWGVCEKR-------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~-------------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~  429 (465)
                      ++|++|+.|+.|++||+++..             ...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.. ..
T Consensus       269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-~~  347 (393)
T 1erj_A          269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-LM  347 (393)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-EE
T ss_pred             CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EE
Confidence            999999999999999997532             2346789999999999999999999999999999999987653 23


Q ss_pred             eeecCcccccCCceeeEEEee
Q 012367          430 VDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       430 ~~~~~~~~~~~~~It~~~f~p  450 (465)
                      +..      +...|.++.|++
T Consensus       348 l~~------h~~~v~~v~~~~  362 (393)
T 1erj_A          348 LQG------HRNSVISVAVAN  362 (393)
T ss_dssp             EEC------CSSCEEEEEECS
T ss_pred             ECC------CCCCEEEEEecC
Confidence            332      335788887765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=1.8e-25  Score=217.74  Aligned_cols=227  Identities=15%  Similarity=0.230  Sum_probs=169.0

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCK  259 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~  259 (465)
                      ++..+...+......+++|......     ......+.+|.++|++++|+|  ++++||||+.|++|+|||+.++..   
T Consensus        22 s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~---   93 (316)
T 3bg1_A           22 DYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW---   93 (316)
T ss_dssp             CGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC---
T ss_pred             cCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc---
Confidence            3333333333445556666432211     112456789999999999986  489999999999999999875321   


Q ss_pred             eecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEe
Q 012367          260 SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQ  336 (465)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD  336 (465)
                                                              .....+.+|...|.+++|+|+  + +|++|+.|++|++||
T Consensus        94 ----------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd  133 (316)
T 3bg1_A           94 ----------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT  133 (316)
T ss_dssp             ----------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred             ----------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence                                                    124456789999999999986  3 899999999999999


Q ss_pred             CCCCeE---eEEe-cCCCceEEEEEccCC-----------------CCEEEEEeCCCcEEEEeCCCC----eEEecccCC
Q 012367          337 VGCNQC---LNVF-DHHNYVTCVQFNPID-----------------DNYFISGSIDGKVRIWGVCEK----RVVDWADVR  391 (465)
Q Consensus       337 ~~~~~~---l~~~-~h~~~V~~i~fsp~~-----------------~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~  391 (465)
                      +..+..   ...+ .|...|.+++|+| +                 +.+|++|+.|++|++||+...    ....+.+|.
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~  212 (316)
T 3bg1_A          134 YTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS  212 (316)
T ss_dssp             ECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred             cCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence            987632   2233 4888999999999 5                 478999999999999999754    233477899


Q ss_pred             CCeEEEEEeeCC----CEEEEEEcCCcEEEEEecCCc---eeeeEeeecCcccccCCceeeEEEeecCCc------c-ce
Q 012367          392 DVISAICYIPDG----KGFIVGSITGTCHFYKASGND---LKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NF  457 (465)
Q Consensus       392 ~~V~sv~~spdg----~~l~sgs~dG~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~  457 (465)
                      ..|++++|+|++    +.|++|+.||+|++|++.+..   .....+..      +...|.++.|+|++.+      | ++
T Consensus       213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~g~~las~~~D~~v  286 (316)
T 3bg1_A          213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK------FNDVVWHVSWSITANILAVSGGDNKV  286 (316)
T ss_dssp             SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE------CSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred             CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc------CCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence            999999999987    889999999999999998632   11112221      2468999999998644      3 47


Q ss_pred             eeeecC
Q 012367          458 RRFQTP  463 (465)
Q Consensus       458 ~~~~~p  463 (465)
                      ++|...
T Consensus       287 ~lw~~~  292 (316)
T 3bg1_A          287 TLWKES  292 (316)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=1.1e-24  Score=234.71  Aligned_cols=201  Identities=19%  Similarity=0.300  Sum_probs=166.5

Q ss_pred             chhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ....+.+|++.|++|+|+|++ .+|+|||.||+|+||++......                                   
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~-----------------------------------  418 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-----------------------------------  418 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-----------------------------------
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-----------------------------------
Confidence            345688999999999999875 69999999999999998753110                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                           .......+.+|...|.+++|+|++ +|++|+.|++|+|||+.++.++..+ .|...|.+++|+| ++++|++|+.
T Consensus       419 -----~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~  492 (694)
T 3dm0_A          419 -----YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASR  492 (694)
T ss_dssp             -----SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEET
T ss_pred             -----cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeC
Confidence                 012245678999999999999975 8999999999999999999998888 6999999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEec----ccCCCCeEEEEEeeCC--CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          371 DGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~----~~~~~~V~sv~~spdg--~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      |++|+|||+........    .+|...|.+++|+|++  ..|++|+.||+|++||+.+.+... .+..      +...|+
T Consensus       493 D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~~~------h~~~v~  565 (694)
T 3dm0_A          493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-TLAG------HTGYVS  565 (694)
T ss_dssp             TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-EECC------CSSCEE
T ss_pred             CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-EEcC------CCCCEE
Confidence            99999999977655442    4688899999999987  589999999999999999876532 2222      346899


Q ss_pred             eEEEeecCCc------c-ceeeeec
Q 012367          445 GIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       445 ~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ++.|+|++.+      | .+++|+.
T Consensus       566 ~v~~spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          566 TVAVSPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             EEEECTTSSEEEEEETTSBCEEEET
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            9999998654      3 4778875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=5.9e-24  Score=207.08  Aligned_cols=229  Identities=15%  Similarity=0.282  Sum_probs=161.8

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-----
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-----  266 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-----  266 (465)
                      ..+..+++|.-.....  ....+.+.+.+|.+.|++++|+|+|++|++|+.|+.|++|+................     
T Consensus        58 s~D~~i~vWd~~~~~~--~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  135 (340)
T 4aow_A           58 SRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA  135 (340)
T ss_dssp             ETTSCEEEEEECCSSS--CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             cCCCeEEEEECCCCCc--ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence            4455666665433211  112344678899999999999999999999999999999998775443322221111     


Q ss_pred             -------cccccCCCeEEecc-------------------------CCCCce-eEecC-C--ceeeec-CCcceeeeccc
Q 012367          267 -------FGSNAKEGKIKFGK-------------------------KKSSHV-PVVIP-D--EVFQIE-ESPLQELHGHK  309 (465)
Q Consensus       267 -------~~~~~~~~~~~~~~-------------------------~~~~~~-~~~~~-~--~~~~~~-~~~~~~~~gh~  309 (465)
                             +.....++.+.++.                         ...... ..... .  .+|++. .+.+..+.+|.
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~  215 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT  215 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence                   11111111111111                         000000 00111 1  123332 34566788999


Q ss_pred             cceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--
Q 012367          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--  386 (465)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--  386 (465)
                      +.|.+++|+|++ +|++|+.|++|++||+.+.+++..+.+...|.+++|+| ++. +++++.|+.|++||++++..+.  
T Consensus       216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRY-WLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS-SSS-EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC-CCc-eeeccCCCEEEEEECCCCeEEEec
Confidence            999999999975 89999999999999999999999999999999999999 665 5566679999999998876543  


Q ss_pred             --------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          387 --------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       387 --------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                              ...|...|++++|+|+|++|++|+.||.|+|||+.+++
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                    23578899999999999999999999999999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=1e-24  Score=235.14  Aligned_cols=260  Identities=18%  Similarity=0.286  Sum_probs=182.9

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA  271 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~  271 (465)
                      .....+++|........  .....+.+.+|.+.|++++|+|+|++|+||+.||+|+|||+.++........+...+..  
T Consensus       402 s~D~~i~~W~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~--  477 (694)
T 3dm0_A          402 SRDKSIILWKLTKDDKA--YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS--  477 (694)
T ss_dssp             ETTSEEEEEECCCSTTC--SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE--
T ss_pred             eCCCcEEEEEccCCCcc--cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEE--
Confidence            33455666643322111  11233567899999999999999999999999999999999988766555443332221  


Q ss_pred             CCCeEEeccCCCCceeEecCCc--eeeecCCccee----eeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeE
Q 012367          272 KEGKIKFGKKKSSHVPVVIPDE--VFQIEESPLQE----LHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC  342 (465)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~  342 (465)
                          +.+...............  +|+........    ..+|...|.+++|+|++   .|++++.|++|++||+.++++
T Consensus       478 ----~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          478 ----VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL  553 (694)
T ss_dssp             ----EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             ----EEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence                111111111111111111  22222222222    24799999999999864   799999999999999999999


Q ss_pred             eEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          343 LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       343 l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ...+ .|...|++++|+| ++++|++|+.|++|+|||+.+++.+....+...|.+++|+|++.+|++++ ++.|++||+.
T Consensus       554 ~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          554 RSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             EEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            8888 5899999999999 99999999999999999999998887667778899999999998877765 5669999999


Q ss_pred             CCceeeeEeeecCc-------------ccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          422 GNDLKLEKVDFHDR-------------KKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       422 ~~~~~~~~~~~~~~-------------~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ++..... +..+..             .......++++.|+|+|.+      | .+++|++
T Consensus       632 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          632 SKSIVED-LKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             TTEEEEE-ECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCChhh-hccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            8765432 211110             0112234789999998654      4 3778874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=2.4e-24  Score=214.41  Aligned_cols=196  Identities=11%  Similarity=0.109  Sum_probs=145.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce--
Q 012367          219 QAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV--  294 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  294 (465)
                      ..|...+.+++|||||++||+|  +.|++|+|||+.+............       ...+.+...+... .....+.+  
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~-------V~~v~fspdg~~l-~s~s~~~~~~  201 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE-------VKDLHFSTDGKVV-AYITGSSLEV  201 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC-------CCEEEECTTSSEE-EEECSSCEEE
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc-------eEEEEEccCCceE-EeccceeEEE
Confidence            4566779999999999987655  4799999999999877665543221       1122222211111 11111111  


Q ss_pred             eee-cCCcc--eeeeccccceEEEEecCCC-EEEEEeCCC----eEEEEeCCCCeEe----EEe-cCCCceEEEEEccCC
Q 012367          295 FQI-EESPL--QELHGHKGDVLDLAWSNSN-YLLSCSMDK----TVRMWQVGCNQCL----NVF-DHHNYVTCVQFNPID  361 (465)
Q Consensus       295 ~~~-~~~~~--~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg----tV~lWD~~~~~~l----~~~-~h~~~V~~i~fsp~~  361 (465)
                      +.. ....+  ....+|...|.+++|+|++ ++++++.|+    ++++|++......    ..+ .|...|++++|+| +
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-d  280 (365)
T 4h5i_A          202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-K  280 (365)
T ss_dssp             EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-T
T ss_pred             EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-C
Confidence            111 12222  2345789999999999986 788888887    6899998776542    223 5888999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +++||+|+.|++|+|||+.+++++.  ..+|...|++|+|+|||++|++|+.|++|+||++..+
T Consensus       281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999998775  4689999999999999999999999999999999754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.2e-23  Score=220.72  Aligned_cols=233  Identities=22%  Similarity=0.388  Sum_probs=176.7

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-  292 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (465)
                      ..+.+.+|.+.|++++|+|++++|++++.||+|++||+........ .......      ..+.+.............. 
T Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~-~~~~~~v------~~~~~s~~g~~l~~~~~dg~  367 (577)
T 2ymu_A          295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSV------WGVAFSPDGQTIASASDDKT  367 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-CCCSSCE------EEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE-eCCCCCE------EEEEECCCCCEEEEEeCCCE
Confidence            3456789999999999999999999999999999999876543221 1111111      0111111111111111111 


Q ss_pred             -ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367          293 -EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                       .+|+...+.+..+.+|...|.+++|+|++ +|++++.|++|++||.. ++.+..+ .|...|++++|+| ++++|++++
T Consensus       368 v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~  445 (577)
T 2ymu_A          368 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DDQTIASAS  445 (577)
T ss_dssp             EEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECC-CCCEEEEEc
Confidence             23444566778889999999999999985 89999999999999964 5666666 6999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      .|+.|++||.....+..+.+|...|++++|+|++++|++++.||.|++||..+..  ...+..      +...|++++|+
T Consensus       446 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~--~~~~~~------h~~~v~~l~~s  517 (577)
T 2ymu_A          446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTG------HSSSVRGVAFS  517 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCE--EEEEEC------CSSCEEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE--EEEEeC------CCCCEEEEEEc
Confidence            9999999998777677788999999999999999999999999999999975432  223333      34689999999


Q ss_pred             ecCCc------c-ceeeeecC
Q 012367          450 ISKNY------D-NFRRFQTP  463 (465)
Q Consensus       450 p~gs~------d-~~~~~~~p  463 (465)
                      |+|.+      | .+++|+.+
T Consensus       518 ~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          518 PDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTT
T ss_pred             CCCCEEEEEECcCEEEEEeCC
Confidence            99765      3 37788754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=1.7e-23  Score=211.77  Aligned_cols=235  Identities=21%  Similarity=0.354  Sum_probs=175.1

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.++..................................+...    
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~----  217 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR----  217 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT----
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeec----
Confidence            3457899999999999999999999999999999999877665544333322222212111111111111111100    


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE----eEEe-cCCCceEEEEEccCCCCEEEEE--
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVF-DHHNYVTCVQFNPIDDNYFISG--  368 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~----l~~~-~h~~~V~~i~fsp~~~~~l~sg--  368 (465)
                      .....+..+.+|...+..+.|+|++ ++++++.|+.|++||+.+++.    +..+ .|...|.+++|+|.+.++++++  
T Consensus       218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g  297 (420)
T 4gga_A          218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG  297 (420)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred             ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence            1234466788999999999999875 899999999999999987652    3333 5888999999999777887765  


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE--cCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs--~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      +.|++|++||+.++.......+...+.++.|+|+++.+++++  .||.|++||+.+++.. ..+..      |...|+++
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-~~l~g------H~~~V~~l  370 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKG------HTSRVLSL  370 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECC------CSSCEEEE
T ss_pred             cCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-EEEcC------CCCCEEEE
Confidence            479999999999999988777888899999999999998876  6999999999887653 23322      44789999


Q ss_pred             EEeecCCc------cc-eeeeec
Q 012367          447 QGRISKNY------DN-FRRFQT  462 (465)
Q Consensus       447 ~f~p~gs~------d~-~~~~~~  462 (465)
                      +|+|+|.+      |+ +++|+.
T Consensus       371 ~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          371 TMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             EECTTSSCEEEEETTTEEEEECC
T ss_pred             EEcCCCCEEEEEecCCeEEEEEC
Confidence            99998643      54 777764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.7e-25  Score=222.04  Aligned_cols=198  Identities=14%  Similarity=0.175  Sum_probs=151.9

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ++.|.++|++++|+|+|++||+|+.||.|+|||+.+...                                         
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----------------------------------------   45 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----------------------------------------   45 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence            445788999999999999999999999999999876421                                         


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe---EeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~---~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                        ..+..+.+|...|.+++|+|++ +|++++.|++|++||+.++.   +...+ .|...|++++|+| ++++|++|+.|+
T Consensus        46 --~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  122 (377)
T 3dwl_C           46 --KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGAR  122 (377)
T ss_dssp             --EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSS
T ss_pred             --EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCC
Confidence              2345567899999999999975 89999999999999999877   44444 6999999999999 999999999999


Q ss_pred             cEEEEeCCCCe----EEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee-------------eEeeecC
Q 012367          373 KVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-------------EKVDFHD  434 (465)
Q Consensus       373 ~I~iwd~~~~~----~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~-------------~~~~~~~  434 (465)
                      .|++||+.++.    ...+.. |...|++++|+|++++|++|+.||.|++||+.......             ....  .
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~  200 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC--A  200 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE--E
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh--h
Confidence            99999999876    344555 99999999999999999999999999999996433211             1110  0


Q ss_pred             cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          435 RKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       435 ~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      .. .+...|+++.|+|++.+      | .+++|+.
T Consensus       201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred             cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            11 35578999999998754      3 3667764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.7e-24  Score=213.08  Aligned_cols=241  Identities=24%  Similarity=0.299  Sum_probs=178.3

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc---------cCCCeEEeccCCCC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN---------AKEGKIKFGKKKSS  284 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  284 (465)
                      ....+.+|.+.|++++|+|++++|++++.||.|++||+.++................         .....+.+... ..
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  219 (425)
T 1r5m_A          141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DK  219 (425)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TE
T ss_pred             eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CE
Confidence            345677899999999999999999999999999999998877655443322210000         00001111110 11


Q ss_pred             ceeEecCCc--eeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEcc
Q 012367          285 HVPVVIPDE--VFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP  359 (465)
Q Consensus       285 ~~~~~~~~~--~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp  359 (465)
                      .......+.  +|++ ...++..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+++|+|
T Consensus       220 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  299 (425)
T 1r5m_A          220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG  299 (425)
T ss_dssp             EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET
T ss_pred             EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC
Confidence            111111111  2232 235667788999999999999975 99999999999999999999888884 889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-------------
Q 012367          360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-------------  425 (465)
Q Consensus       360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~-------------  425 (465)
                       ++ ++++++.|+.|++||+.+++.+. +..|...|.+++|+|++++|++|+.||.|++||+.+...             
T Consensus       300 -~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  377 (425)
T 1r5m_A          300 -DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL  377 (425)
T ss_dssp             -TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------
T ss_pred             -CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccccc
Confidence             77 99999999999999999887765 667889999999999999999999999999999987661             


Q ss_pred             ------eeeEeeecCcccccCC--ceeeEEEeecCCc------c-ceeeeecC
Q 012367          426 ------KLEKVDFHDRKKTSGN--KITGIQGRISKNY------D-NFRRFQTP  463 (465)
Q Consensus       426 ------~~~~~~~~~~~~~~~~--~It~~~f~p~gs~------d-~~~~~~~p  463 (465)
                            .+..+..      +..  .|++++|+|++.+      | .+++|+.+
T Consensus       378 ~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          378 NPLPIPLYASYQS------SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -CEECCEEEEECC------TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CcccchhhhhhcC------cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                  1112221      222  8999999998754      3 37777765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=2.8e-23  Score=201.62  Aligned_cols=234  Identities=18%  Similarity=0.322  Sum_probs=174.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--ceee
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQ  296 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  296 (465)
                      .+|.+.|++++|+|++++|++++ ||.|++|++.+............ .........+.+..............  .+|+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            48999999999999999999999 99999999987543221111000 00000011111221111111111111  1233


Q ss_pred             ecCC---cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367          297 IEES---PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       297 ~~~~---~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      +...   ....+.+|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  204 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLD  204 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecC
Confidence            3322   356678899999999999975 89999999999999999999998885 888999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      +.|++||+++++.+....+...+.+++|+|+++.|++++.+|.|++||+.+.+..  .+.      .+...|+++.|+|+
T Consensus       205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--~~~------~~~~~v~~~~~~~~  276 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLH------LHESCVLSLKFAYC  276 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EEC------CCSSCEEEEEECTT
T ss_pred             CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE--EEc------CCccceeEEEECCC
Confidence            9999999999998887788999999999999999999999999999999987542  221      23468999999998


Q ss_pred             CCc------c-ceeeeecC
Q 012367          452 KNY------D-NFRRFQTP  463 (465)
Q Consensus       452 gs~------d-~~~~~~~p  463 (465)
                      +.+      | .+++|+..
T Consensus       277 ~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          277 GKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             SSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEecCCCcEEEEECC
Confidence            753      3 36777653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.1e-24  Score=224.73  Aligned_cols=204  Identities=13%  Similarity=0.125  Sum_probs=158.8

Q ss_pred             hhhccCCCcEEEEEECCC------CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          216 QEIQAHKGCIWTLKFSPD------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspd------g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      +.+.+|.+.|++|+|+|+      +.+||||+.||+|+|||+.+.......                             
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~-----------------------------  251 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV-----------------------------  251 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-----------------------------
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-----------------------------
Confidence            446788999999999997      579999999999999999764221000                             


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEE--EEccCCC-CE
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCV--QFNPIDD-NY  364 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i--~fsp~~~-~~  364 (465)
                           ......+...+.+|...|++++|++++.|++|+.||+|++||+.++. +...+ .|...|++|  .|+| ++ ++
T Consensus       252 -----~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~  325 (524)
T 2j04_B          252 -----FKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV  325 (524)
T ss_dssp             -----EECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred             -----ceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence                 00011345677899999999999988899999999999999998764 44445 599999999  5677 77 89


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEe-cccCC--CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367          365 FISGSIDGKVRIWGVCEKRVVD-WADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~--~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~  441 (465)
                      |+||+.|++|+|||+++++... +.+|.  ..|.+++|+|+++.+++++.|++|++||++...... .+..      +..
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~-~l~g------H~~  398 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH-PLVS------RET  398 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE-EEEE------CSS
T ss_pred             EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce-eeec------CCC
Confidence            9999999999999998865432 33443  358899999999999999999999999998865432 2222      347


Q ss_pred             ceeeEEEeecCCc------cc-eeeee
Q 012367          442 KITGIQGRISKNY------DN-FRRFQ  461 (465)
Q Consensus       442 ~It~~~f~p~gs~------d~-~~~~~  461 (465)
                      .|++++|+|+|.+      |+ +++|+
T Consensus       399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          399 TITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             CEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            8999999998643      54 56665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=7.1e-24  Score=211.50  Aligned_cols=236  Identities=12%  Similarity=0.126  Sum_probs=172.6

Q ss_pred             chhhhccCCCcEEEEEECCC----C---CEEEEEeCCCcEEEEecCCcee-----eeeeecCCCCcccccCCCeEEec--
Q 012367          214 TSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAA-----SCKSFTDDGGFGSNAKEGKIKFG--  279 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspd----g---~~LaSgs~Dg~V~iWd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--  279 (465)
                      ....+.+|..+|++++|+|+    |   ++|++|+.||.|++|++.+...     ............ ......+.+.  
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~  132 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK-KHSFWALKWGAS  132 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGG-GSCEEEEEEECC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccC-CCcEEEEEEeec
Confidence            45667799999999999999    9   9999999999999999987654     322222210000 0111112222  


Q ss_pred             --cCCCC-ceeEecCC--ceeeecC-------Ccce-----ee-------eccccceEEEEecCCCEEEEEeCCCeEEEE
Q 012367          280 --KKKSS-HVPVVIPD--EVFQIEE-------SPLQ-----EL-------HGHKGDVLDLAWSNSNYLLSCSMDKTVRMW  335 (465)
Q Consensus       280 --~~~~~-~~~~~~~~--~~~~~~~-------~~~~-----~~-------~gh~~~V~~l~~s~~~~l~s~s~DgtV~lW  335 (465)
                        ..... .......+  .+|++..       ..+.     .+       ..|...|.+++|+|+++|++++.|+.|++|
T Consensus       133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS  212 (397)
T ss_dssp             C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEE
T ss_pred             cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEE
Confidence              11111 11111122  1344433       3444     66       348999999999997788899999999999


Q ss_pred             eCCCCeEeEEec----C---CCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCCCeEEe-ccc-------------CC
Q 012367          336 QVGCNQCLNVFD----H---HNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVD-WAD-------------VR  391 (465)
Q Consensus       336 D~~~~~~l~~~~----h---~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~~~~~~-~~~-------------~~  391 (465)
                      |+++++++..+.    |   ...|.+++|+| ++++|++++.|   +.|++||+.+++.+. +..             |.
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            999999998885    6   88999999999 99999999999   999999999887665 555             89


Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc---------------CCceeeEEEeecC
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS---------------GNKITGIQGRISK  452 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~---------------~~~It~~~f~p~g  452 (465)
                      ..|.+++|+|++++|++|+.||.|++||+.+++... .+........+               ...|+++.|+|++
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT-TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE-EEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            999999999999999999999999999999876533 33311111112               5789999999997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=1.6e-23  Score=208.89  Aligned_cols=222  Identities=20%  Similarity=0.306  Sum_probs=172.0

Q ss_pred             cccccchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          209 FTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      +........+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.+...........                       
T Consensus        30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----------------------   86 (408)
T 4a11_B           30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-----------------------   86 (408)
T ss_dssp             EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----------------------
T ss_pred             cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----------------------
Confidence            333444566789999999999999 99999999999999999998754322111000                       


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC--CCC
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDN  363 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~--~~~  363 (465)
                            .   .........+|...|.+++|+| ++ +|++++.|++|++||+.+++.+..+.+...+.++.|+|.  ++.
T Consensus        87 ------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
T 4a11_B           87 ------V---CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC  157 (408)
T ss_dssp             ------E---EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCC
T ss_pred             ------c---ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCc
Confidence                  0   0001112346999999999998 44 899999999999999999999999999999999999984  234


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCc------
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDR------  435 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~------  435 (465)
                      ++++|+.|+.|++||+.++..+. +..|...|++++|+|+++ .|++|+.||.|++||++........+..+..      
T Consensus       158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T 4a11_B          158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV  237 (408)
T ss_dssp             EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred             EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence            99999999999999999876554 677999999999999998 5899999999999999887654444322111      


Q ss_pred             ---ccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          436 ---KKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       436 ---~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                         ...+...|+++.|+|++.+      | .+++|+.
T Consensus       238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence               1335578999999998653      3 3677764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3e-23  Score=203.75  Aligned_cols=242  Identities=17%  Similarity=0.247  Sum_probs=179.7

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCC-eEEeccCC----CCce
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEG-KIKFGKKK----SSHV  286 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~----~~~~  286 (465)
                      ...+.+.+|.+.|++++|+|++++|++++.||+|++||+.++............... ....+ .+......    ....
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            445677899999999999999999999999999999999987766555422111100 00111 11111100    0111


Q ss_pred             eEecC------CceeeecCCcceeeecccc--ceEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeEeEEec-CCCceEEE
Q 012367          287 PVVIP------DEVFQIEESPLQELHGHKG--DVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCV  355 (465)
Q Consensus       287 ~~~~~------~~~~~~~~~~~~~~~gh~~--~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~~l~~~~-h~~~V~~i  355 (465)
                      .++..      .........+...+.+|.+  .|.+++|+|++ +|++++.|+.|++||+.+ +..+..+. |...|.++
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  224 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM  224 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence            11110      0111112345666777877  99999999975 899999999999999998 77787774 88899999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC--------------cEEEEEec
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------TCHFYKAS  421 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG--------------~v~iwd~~  421 (465)
                      +|+| ++++|++++.|+.|++||+.+++.+....+...+.+++|+|+++++++++.++              .+++||+.
T Consensus       225 ~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          225 QFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             EECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             EECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            9999 99999999999999999999998888777889999999999999999999998              89999998


Q ss_pred             CCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      +++... .+..      +...|+++.|+|++.+      | .+++|+.
T Consensus       304 ~~~~~~-~~~~------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          304 FEEEIG-RVQG------HFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             TCCEEE-EEEC------CSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             CCcchh-heec------ccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            876532 2322      3468999999998653      3 3677764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.8e-23  Score=206.36  Aligned_cols=205  Identities=20%  Similarity=0.299  Sum_probs=164.9

Q ss_pred             cchhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          213 YTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ...+.+.+|.++|++++|+|+  +++|++|+.||.|++||+.+...                                  
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----------------------------------   91 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW----------------------------------   91 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred             eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce----------------------------------
Confidence            345677899999999999987  99999999999999999886431                                  


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCCeE---eEEecCCCceEEEEEccC----
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPI----  360 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~~~---l~~~~h~~~V~~i~fsp~----  360 (465)
                               ..+..+.+|...|.+++|+|+  + +|++++.|++|++||+.++..   .....|...|.+++|+|.    
T Consensus        92 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           92 ---------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             ---------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             ---------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence                     134556679999999999986  4 899999999999999988733   233368899999999995    


Q ss_pred             --------CCCEEEEEeCCCcEEEEeCCCCe----E-EecccCCCCeEEEEEeeC---CCEEEEEEcCCcEEEEEecCCc
Q 012367          361 --------DDNYFISGSIDGKVRIWGVCEKR----V-VDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       361 --------~~~~l~sgs~Dg~I~iwd~~~~~----~-~~~~~~~~~V~sv~~spd---g~~l~sgs~dG~v~iwd~~~~~  424 (465)
                              ++.+|++|+.|+.|++||++++.    + ..+.+|...|++++|+|+   +++|++++.||.|++||+.++.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    58999999999999999997653    2 246779999999999999   8999999999999999999875


Q ss_pred             eeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          425 LKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      .........  ...+...|+++.|+|++.+      | .+++|+.
T Consensus       243 ~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          243 GPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             ccceeeeec--cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            433211111  1224568999999998754      3 3677764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.92  E-value=7.6e-24  Score=210.73  Aligned_cols=149  Identities=9%  Similarity=0.000  Sum_probs=115.9

Q ss_pred             ccccceEEEEecCCC-EEE--EEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          307 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~--s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      .+...+.+++|+|++ +++  +++.|++|+|||+.+++++..+.|...|++++|+| +++++++++.++ +++|+..++.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc
Confidence            345668999999987 444  45579999999999999999999999999999999 999999998655 4555443221


Q ss_pred             E-----------------------------------------------------EecccCCCCeEEEEEeeCCCEEEEEE
Q 012367          384 V-----------------------------------------------------VDWADVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       384 ~-----------------------------------------------------~~~~~~~~~V~sv~~spdg~~l~sgs  410 (465)
                      .                                                     ..+.+|...|++++|+|||++|++|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            0                                                     01234567799999999999999999


Q ss_pred             cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeecC
Q 012367          411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQTP  463 (465)
Q Consensus       411 ~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~p  463 (465)
                      .||+|+|||+.+++.......      .|...|++++|+|+|.+      | ++|+|++|
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~------gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQ------AHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETT------SSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCCEEEEEECCCCcEEEEecC------cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            999999999998765332222      24578999999999654      5 48999988

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=6e-23  Score=202.49  Aligned_cols=203  Identities=14%  Similarity=0.166  Sum_probs=153.0

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.+.............    .....+.+...............
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~  119 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGSRV  119 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETTSS
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeCCCE
Confidence            45677899999999999999999999999999999999877544332211110    00111112211111111111121


Q ss_pred             --eeeecCCc-----ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC------------------CCCeEeEEe-
Q 012367          294 --VFQIEESP-----LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------------------GCNQCLNVF-  346 (465)
Q Consensus       294 --~~~~~~~~-----~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~------------------~~~~~l~~~-  346 (465)
                        +|++....     .....+|...|.+++|+|++ +|++++.|+.|++||+                  ..++++..+ 
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence              23343222     22335789999999999975 8999999999999995                  467888888 


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .|...|.+++|+| ++++|++++.|+.|++||+.+++.+. +..|...|++++|+|++++|++| .||.|++|++.+
T Consensus       200 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          200 SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            5888999999999 99999999999999999998877664 67788899999999999988887 999999999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=8.5e-24  Score=212.71  Aligned_cols=196  Identities=14%  Similarity=0.195  Sum_probs=157.9

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+.+.+| ..+....|+|++++||+|+.||.|++||+.+..                                      
T Consensus        90 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------------------------  130 (420)
T 3vl1_A           90 GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--------------------------------------  130 (420)
T ss_dssp             TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--------------------------------------
T ss_pred             eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--------------------------------------
Confidence            34555566 555666889999999999999999999987642                                      


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                             ....+.+|.+.|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|
T Consensus       131 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d  202 (420)
T 3vl1_A          131 -------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLD  202 (420)
T ss_dssp             -------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred             -------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCC
Confidence                   234456899999999999975 89999999999999999999888884 899999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEec-c---cCCCCeEE---------------------EEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          372 GKVRIWGVCEKRVVDW-A---DVRDVISA---------------------ICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~-~---~~~~~V~s---------------------v~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +.|++||+++++.+.. .   .+...|.+                     ++|+|+|++|++|+.||.|++||+.+++..
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            9999999998877652 2   23444444                     455788999999999999999999987654


Q ss_pred             eeEeeecCcccccCCceeeEEEeecCC-------cc-ceeeeec
Q 012367          427 LEKVDFHDRKKTSGNKITGIQGRISKN-------YD-NFRRFQT  462 (465)
Q Consensus       427 ~~~~~~~~~~~~~~~~It~~~f~p~gs-------~d-~~~~~~~  462 (465)
                      .....      .+...|+++.|+|++.       .| .+++|+.
T Consensus       283 ~~~~~------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          283 IQLPS------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             EEECC------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             EEccc------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence            33221      2346899999999876       23 4677765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=7.5e-24  Score=212.78  Aligned_cols=199  Identities=16%  Similarity=0.263  Sum_probs=162.2

Q ss_pred             cchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .+...+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.++..                                   
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------------------  166 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-----------------------------------  166 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-----------------------------------
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----------------------------------
Confidence            3456788999999999999998 6999999999999999987532                                   


Q ss_pred             CceeeecCCcceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCc-eEEEEEccCCCCEE
Q 012367          292 DEVFQIEESPLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNY-VTCVQFNPIDDNYF  365 (465)
Q Consensus       292 ~~~~~~~~~~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~-V~~i~fsp~~~~~l  365 (465)
                                +..+  .+|...|.+++|+|++ +|++++.|++|++||+++++++..+  .|... +.+++|+| ++.+|
T Consensus       167 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  235 (402)
T 2aq5_A          167 ----------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKIL  235 (402)
T ss_dssp             ----------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEE
T ss_pred             ----------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEE
Confidence                      3444  5799999999999975 8999999999999999999999887  46654 89999999 99999


Q ss_pred             EEE---eCCCcEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEE-EEcCCcEEEEEecCCceeeeEeeecCcccc
Q 012367          366 ISG---SIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (465)
Q Consensus       366 ~sg---s~Dg~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~s-gs~dG~v~iwd~~~~~~~~~~~~~~~~~~~  438 (465)
                      ++|   +.|+.|++||+++...   .....+...|.+++|+|+++.|++ |+.||.|++||+.+++..+..+..+.    
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~----  311 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS----  311 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC----
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc----
Confidence            999   7899999999987543   233467788999999999999865 55799999999998874233332221    


Q ss_pred             cCCceeeEEEeecCCcc-----ceeeee
Q 012367          439 SGNKITGIQGRISKNYD-----NFRRFQ  461 (465)
Q Consensus       439 ~~~~It~~~f~p~gs~d-----~~~~~~  461 (465)
                      +...|+++.|+|++.+.     .+++|.
T Consensus       312 ~~~~v~~~~~sp~~~~~~s~~~~~~~~~  339 (402)
T 2aq5_A          312 SKESQRGMGYMPKRGLEVNKCEIARFYK  339 (402)
T ss_dssp             CSSCCSEEEECCGGGSCGGGTEEEEEEE
T ss_pred             cCCcccceEEecccccceecceeEEEEE
Confidence            34689999999997653     256665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1e-23  Score=229.50  Aligned_cols=200  Identities=20%  Similarity=0.347  Sum_probs=160.6

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+.+.+|.++|++++|+|+|++||+|+.||+|+|||+.+...                                      
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------   43 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------   43 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE--------------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC--------------------------------------
Confidence            356789999999999999999999999999999999874211                                      


Q ss_pred             eeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEEE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI  366 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l~  366 (465)
                           ..+..+.+|.+.|.+++|+|+   .+|++|+.||+|++||+.++.  .+..+ .|...|++++|+| +  +++++
T Consensus        44 -----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~  117 (753)
T 3jro_A           44 -----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL  117 (753)
T ss_dssp             -----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred             -----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence                 235667789999999999864   499999999999999999986  55555 5889999999999 7  99999


Q ss_pred             EEeCCCcEEEEeCCCC---eEEecccCCCCeEEEEEee-------------CCCEEEEEEcCCcEEEEEecCCceeee-E
Q 012367          367 SGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLE-K  429 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~sp-------------dg~~l~sgs~dG~v~iwd~~~~~~~~~-~  429 (465)
                      +|+.||.|++||+.++   ......+|...|++++|+|             ++..|++|+.||.|++||+.++..... .
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence            9999999999999876   3445678999999999999             589999999999999999987754322 1


Q ss_pred             eeecCcccccCCceeeEEEeec---CCc------c-ceeeeec
Q 012367          430 VDFHDRKKTSGNKITGIQGRIS---KNY------D-NFRRFQT  462 (465)
Q Consensus       430 ~~~~~~~~~~~~~It~~~f~p~---gs~------d-~~~~~~~  462 (465)
                      ..+.    .+...|+++.|+|+   +.+      | .+++|+.
T Consensus       198 ~~~~----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          198 STLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             EEEC----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             eeec----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence            1122    24578999999998   433      3 3677764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.5e-23  Score=200.04  Aligned_cols=234  Identities=21%  Similarity=0.304  Sum_probs=171.7

Q ss_pred             ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ......+++.+|.+.|++++| |++++||+|+.||.|++||+.+.............+..      +.+...........
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~   78 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNS------VCYDSEKELLLFGG   78 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEE------EEEETTTTEEEEEE
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEE------EEECCCCCEEEEec
Confidence            445566788999999999999 99999999999999999999887665554443322211      11111111111111


Q ss_pred             cCCc--eeee----cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCC
Q 012367          290 IPDE--VFQI----EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD  362 (465)
Q Consensus       290 ~~~~--~~~~----~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~  362 (465)
                      ..+.  +|.+    ...++..+.+|...|.+++| .++++++++.|++|++||  .+..+..+ .|...|.+++|+|.++
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence            1111  1222    23457788899999999999 456999999999999999  56666666 5889999999998889


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367          363 NYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~  441 (465)
                      +++++++.|+.|++||.... ...+.. |...|.+++|+|++. +++|+.||.|++||+.+++... .+..      +..
T Consensus       156 ~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~-~~~~------~~~  226 (313)
T 3odt_A          156 NKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR-TYEG------HES  226 (313)
T ss_dssp             TEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE-EEEC------CSS
T ss_pred             CEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh-hhhc------CCc
Confidence            99999999999999994332 333444 899999999999998 9999999999999999876532 3322      346


Q ss_pred             ceeeEEEeecCC-----cc-ceeeeec
Q 012367          442 KITGIQGRISKN-----YD-NFRRFQT  462 (465)
Q Consensus       442 ~It~~~f~p~gs-----~d-~~~~~~~  462 (465)
                      .|+++.|+|++.     .| .+++|+.
T Consensus       227 ~i~~~~~~~~~~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          227 FVYCIKLLPNGDIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             CEEEEEECTTSCEEEEETTSEEEEECT
T ss_pred             eEEEEEEecCCCEEEEecCCEEEEEEC
Confidence            899999999852     23 3666664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=4.4e-23  Score=209.03  Aligned_cols=240  Identities=18%  Similarity=0.297  Sum_probs=158.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee-----------eeeeecCCCCcc------cccCCCeEEeccCC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGFG------SNAKEGKIKFGKKK  282 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~-----------~~~~~~~~~~~~------~~~~~~~~~~~~~~  282 (465)
                      .|.+.|++|+|+|+|++||+|+.||.|+||++.+...           ............      .......+.+....
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            5789999999999999999999999999999987652           222222210000      00111122222221


Q ss_pred             C--CceeEecCC--ceeeecC----------------------------------------Cccee-eeccccceEEEEe
Q 012367          283 S--SHVPVVIPD--EVFQIEE----------------------------------------SPLQE-LHGHKGDVLDLAW  317 (465)
Q Consensus       283 ~--~~~~~~~~~--~~~~~~~----------------------------------------~~~~~-~~gh~~~V~~l~~  317 (465)
                      .  ..+......  .+|++..                                        .+... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            1  111111111  1222211                                        11112 3689999999999


Q ss_pred             cCCC-EEEEEeCCCeEEEEeCC-CCeEeEEe--------cCCCceEEEEEccCCC-CEEEEEeCCCcEEEEeCCCCeE--
Q 012367          318 SNSN-YLLSCSMDKTVRMWQVG-CNQCLNVF--------DHHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRV--  384 (465)
Q Consensus       318 s~~~-~l~s~s~DgtV~lWD~~-~~~~l~~~--------~h~~~V~~i~fsp~~~-~~l~sgs~Dg~I~iwd~~~~~~--  384 (465)
                      +|++ +|++| .|++|++||+. .+.++..+        .|...|++++|+| ++ ++|++|+.||.|++||++++..  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9985 77787 89999999999 45555543        5889999999999 76 9999999999999999998774  


Q ss_pred             ---EecccCCC------------CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc---------cC
Q 012367          385 ---VDWADVRD------------VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT---------SG  440 (465)
Q Consensus       385 ---~~~~~~~~------------~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~---------~~  440 (465)
                         ..+..|..            .|++++|+|+|++|++++. |.|++||+......+..+..|.....         ..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence               44566665            8999999999999999999 99999999873333444444432111         00


Q ss_pred             CceeeEEEeecCCc------c-ceeeeec
Q 012367          441 NKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       441 ~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ..+..+.|+|++.+      | .+++|+.
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence            11345888887543      4 3677764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=6.5e-23  Score=204.47  Aligned_cols=236  Identities=16%  Similarity=0.268  Sum_probs=149.9

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc--c--cCCCeEEeccCCCCceeEecCCc
Q 012367          219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--N--AKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      .+|.+.|++++|+| ++.+|++|+.||.|++||+.+................  .  .......+........      .
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------~  169 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV------Q  169 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSE------E
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeE------E
Confidence            47999999999999 7789999999999999999987766554432211100  0  0011111111111111      1


Q ss_pred             eeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe-EeEEe----------------cCCCceE
Q 012367          294 VFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVF----------------DHHNYVT  353 (465)
Q Consensus       294 ~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~-~l~~~----------------~h~~~V~  353 (465)
                      +|++ ....+..+.+|...|.+++|+|++  +|++++.|+.|++||++++. ++..+                .|...|.
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            2333 245677888999999999999975  68999999999999998765 44443                4778999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCe------------------------------------------------EE
Q 012367          354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKR------------------------------------------------VV  385 (465)
Q Consensus       354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~------------------------------------------------~~  385 (465)
                      +++|+| ++++|++++.|+.|++||+.+++                                                +.
T Consensus       250 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  328 (408)
T 4a11_B          250 GLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT  328 (408)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence            999999 99999999999999999987643                                                12


Q ss_pred             ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccceeeeecC
Q 012367          386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTP  463 (465)
Q Consensus       386 ~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~~~~~~p  463 (465)
                      .+.+|...|++++|+|++++|++|+.||.|++||+.+.+.........  ............+++++....+++|..|
T Consensus       329 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--eccccccccceeecccCccCceeecCCc
Confidence            245688999999999999999999999999999999876543211111  1223355666778888888889999877

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=194.74  Aligned_cols=234  Identities=20%  Similarity=0.321  Sum_probs=172.0

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +.+|...|++|+|+|+|++||||+.||+|++|++.+++.....................................    .
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~----~  138 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR----V  138 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETT----S
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecC----C
Confidence            457899999999999999999999999999999999887666554333222211111111111111111111100    0


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEe-----EEecCCCceEEEEEccCCCCEE--EEEe
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-----NVFDHHNYVTCVQFNPIDDNYF--ISGS  369 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l-----~~~~h~~~V~~i~fsp~~~~~l--~sgs  369 (465)
                      ....+..+.+|...+..+.+++++ +|++++.|++|++||+.+++..     ....+...|.+++++|.+.+.+  ++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  218 (318)
T 4ggc_A          139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  218 (318)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred             CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence            234566788999999999999864 8999999999999999876532     2235788999999999666655  4566


Q ss_pred             CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE--cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367          370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs--~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~  447 (465)
                      .++.|++||...........+...+..++|+|++..+++++  .||.|++||+.+++.. ..+..      |...|+++.
T Consensus       219 ~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~-~~l~g------H~~~V~~l~  291 (318)
T 4ggc_A          219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKG------HTSRVLSLT  291 (318)
T ss_dssp             TTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECC------CSSCEEEEE
T ss_pred             CCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE-EEEcC------CCCCEEEEE
Confidence            78999999999998888888889999999999999888765  7999999999987653 23332      447899999


Q ss_pred             EeecCCc------cc-eeeeec
Q 012367          448 GRISKNY------DN-FRRFQT  462 (465)
Q Consensus       448 f~p~gs~------d~-~~~~~~  462 (465)
                      |+|+|.+      |+ +++|+.
T Consensus       292 ~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          292 MSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             ECTTSSCEEEEETTTEEEEECC
T ss_pred             EcCCCCEEEEEecCCeEEEEEC
Confidence            9998644      54 677764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=2.4e-23  Score=205.38  Aligned_cols=195  Identities=15%  Similarity=0.242  Sum_probs=159.5

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +..|.++|++++|+|++++||+|+.||.|++||+.+...                                         
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------------------------------------   42 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------------------------------------   42 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence            456999999999999999999999999999999876421                                         


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                        ..+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++....+   .|...|.+++|+| ++++|++|+.|+.
T Consensus        43 --~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  119 (372)
T 1k8k_C           43 --VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV  119 (372)
T ss_dssp             --EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS
T ss_pred             --EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE
Confidence              1356677899999999999975 8999999999999999988755543   5888999999999 9999999999999


Q ss_pred             EEEEeCCCCe----EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc-----------------eeeeEee
Q 012367          374 VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-----------------LKLEKVD  431 (465)
Q Consensus       374 I~iwd~~~~~----~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~-----------------~~~~~~~  431 (465)
                      |++||+..+.    ... ...|...|++++|+|++++|++|+.||.|++||+....                 .....+.
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence            9999998765    222 46688999999999999999999999999999975221                 1111222


Q ss_pred             ecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          432 FHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       432 ~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                            .+...|+++.|+|++.+      | .+++|+.
T Consensus       200 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          200 ------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             ------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             ------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence                  23468999999998643      3 3677764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=3.1e-24  Score=218.32  Aligned_cols=190  Identities=21%  Similarity=0.221  Sum_probs=147.6

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG  268 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~  268 (465)
                      .......+++|......     ......+.+|.++|++|+|+| ++++|+|||.||+|+|||+.+.....          
T Consensus       137 sGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~----------  201 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV----------  201 (435)
T ss_dssp             EEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE----------
T ss_pred             EEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE----------
Confidence            33455667777543221     122345679999999999998 68899999999999999997632211          


Q ss_pred             cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367          269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-  346 (465)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-  346 (465)
                                                       +.....+...+.+++|+|++ +|++|+.||+|++||+... .+..+ 
T Consensus       202 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~  247 (435)
T 4e54_B          202 ---------------------------------FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLR  247 (435)
T ss_dssp             ---------------------------------EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSB
T ss_pred             ---------------------------------EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEe
Confidence                                             11112344567889999875 8999999999999999754 44444 


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE----EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~----~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .|...|++++|+|....+|++|+.|+.|+|||+++...    ....+|...|++++|+|+|++|++|+.||.|++||+.+
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            58999999999995556899999999999999987543    23467899999999999999999999999999999998


Q ss_pred             Cceeee
Q 012367          423 NDLKLE  428 (465)
Q Consensus       423 ~~~~~~  428 (465)
                      +.....
T Consensus       328 ~~~~~~  333 (435)
T 4e54_B          328 WDCPLG  333 (435)
T ss_dssp             SSSEEE
T ss_pred             CccceE
Confidence            766543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-23  Score=213.82  Aligned_cols=206  Identities=14%  Similarity=0.254  Sum_probs=145.9

Q ss_pred             chhhh-ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCC---ceee--eeeecCCCCcccccCCCeEEeccCCCCce
Q 012367          214 TSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTS---VAAS--CKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (465)
Q Consensus       214 ~~~~l-~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (465)
                      ..+.+ .+|.+.|++++|+| ++++||||+.||+|+|||+.+   ....  .........+      ..+.+.......+
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~  127 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV------TQITMIPNFDAFA  127 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE------EEEEECTTSSEEE
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE------EEEEEeCCCCEEE
Confidence            34556 78999999999999 999999999999999999876   2211  0111111111      1111111111111


Q ss_pred             eEecCC--ceeee----cCCcceeeec------------cccceEEEE--ecCCC-EEEEEeCCCeEEEEeCCCCeEeEE
Q 012367          287 PVVIPD--EVFQI----EESPLQELHG------------HKGDVLDLA--WSNSN-YLLSCSMDKTVRMWQVGCNQCLNV  345 (465)
Q Consensus       287 ~~~~~~--~~~~~----~~~~~~~~~g------------h~~~V~~l~--~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~  345 (465)
                      ......  .+|++    ..+....+.+            +...+.++.  +++++ +|++++.|++|++||+++++++..
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            111111  12322    1222222221            455666666  34554 899999999999999999999988


Q ss_pred             ec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c-ccCCCCeEEEEEee----CCCEEEEEEcCCcEE
Q 012367          346 FD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-ADVRDVISAICYIP----DGKGFIVGSITGTCH  416 (465)
Q Consensus       346 ~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~-~~~~~~V~sv~~sp----dg~~l~sgs~dG~v~  416 (465)
                      +.   |...|++++|+| ++++|++|+.||.|++||+++++.+. + ..|...|++++|+|    ++.+|++|+.||.|+
T Consensus       208 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~  286 (437)
T 3gre_A          208 IENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT  286 (437)
T ss_dssp             EECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred             EccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence            84   788999999999 99999999999999999999988776 3 27788999996665    678999999999999


Q ss_pred             EEEecCCcee
Q 012367          417 FYKASGNDLK  426 (465)
Q Consensus       417 iwd~~~~~~~  426 (465)
                      +||+.+++..
T Consensus       287 iwd~~~~~~~  296 (437)
T 3gre_A          287 IWNFVKGHCQ  296 (437)
T ss_dssp             EEETTTTEEE
T ss_pred             EEEcCCCcEE
Confidence            9999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.6e-23  Score=196.61  Aligned_cols=232  Identities=19%  Similarity=0.310  Sum_probs=169.4

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee---eeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA---SCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++|++.....   ..........+......+...+.........  
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~--  127 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAK--  127 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEE--
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEE--
Confidence            34466778999999999999999999999999999999876421   1111111111111111111111111111111  


Q ss_pred             cCCceeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEE
Q 012367          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l  365 (465)
                          +|+ .......+.+|...|.+++|+| + +++++++.|+.|++||  ....+..+.  |...|.+++|+| ++. +
T Consensus       128 ----~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~  198 (313)
T 3odt_A          128 ----VWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-F  198 (313)
T ss_dssp             ----EEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-E
T ss_pred             ----EEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-E
Confidence                222 4556778889999999999987 4 5999999999999999  455666663  888999999999 776 9


Q ss_pred             EEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      ++++.|+.|++||+++++.+. +..|...|++++|+|++ .|++|+.||.|++||+.+++... .+..+      ...|+
T Consensus       199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~-~~~~~------~~~i~  270 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ-VITLP------AISIW  270 (313)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE-EEECS------SSCEE
T ss_pred             EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE-EEecc------CceEE
Confidence            999999999999999887665 67799999999999999 68999999999999999876532 33323      35799


Q ss_pred             eEEEeecCCc------cceeeeecC
Q 012367          445 GIQGRISKNY------DNFRRFQTP  463 (465)
Q Consensus       445 ~~~f~p~gs~------d~~~~~~~p  463 (465)
                      ++.|+|++.+      ..+++|+..
T Consensus       271 ~~~~~~~~~~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          271 SVDCMSNGDIIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EEEECTTSCEEEEETTSCEEEEESC
T ss_pred             EEEEccCCCEEEEeCCCcEEEEeCC
Confidence            9999998643      346777643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=1.2e-22  Score=199.08  Aligned_cols=238  Identities=11%  Similarity=0.189  Sum_probs=169.6

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeC---CCcEEEEecCCceeeeeeec-CCCCcccccCCCeEEeccCC---CCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGE---DGVVRIWHVTSVAASCKSFT-DDGGFGSNAKEGKIKFGKKK---SSHVP  287 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~---Dg~V~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~  287 (465)
                      +.+.+|.+.|++++|+|++. ++++|+.   ||.|+|||+.+......... ....+.      .+.+....   .....
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~l~~   85 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK------CGTFGATSLQQRYLAT   85 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE------EEECTTCCTTTCCEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE------EEEEcCCCCCCceEEE
Confidence            44578999999999999996 5556665   99999999998765433221 111111      11121111   11111


Q ss_pred             EecCCc--eeeec-CC-cceeeeccccceEEEEe------cCC-CEEEEEeCCCeEEEEeCCCCe-EeEEec-C----CC
Q 012367          288 VVIPDE--VFQIE-ES-PLQELHGHKGDVLDLAW------SNS-NYLLSCSMDKTVRMWQVGCNQ-CLNVFD-H----HN  350 (465)
Q Consensus       288 ~~~~~~--~~~~~-~~-~~~~~~gh~~~V~~l~~------s~~-~~l~s~s~DgtV~lWD~~~~~-~l~~~~-h----~~  350 (465)
                      ....+.  +|++. .. ++..+.+|...|.+++|      +|+ .+|++++.|++|++||+.++. .+..+. |    ..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            111222  23332 23 67888999999999965      555 499999999999999999886 677763 3    33


Q ss_pred             ceEEEE----EccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee---CCCEEEEEEcCCcEEEEEecCC
Q 012367          351 YVTCVQ----FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       351 ~V~~i~----fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp---dg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      .|++++    |+| +++++++|+.|+.|++||+++++......|...|.+++|+|   ++..|++|+.||.|++||+.++
T Consensus       166 ~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          166 DCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             ceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            899998    677 99999999999999999999999888888999999999999   9999999999999999999865


Q ss_pred             ceeeeEeeecCcccccCCceeeEEEeecCC-------cc-ceeeeec
Q 012367          424 DLKLEKVDFHDRKKTSGNKITGIQGRISKN-------YD-NFRRFQT  462 (465)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~gs-------~d-~~~~~~~  462 (465)
                      +.... +... ....+...|+++.|+|++.       .| .+++|+.
T Consensus       245 ~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          245 HPTKG-FASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             ETTTE-EEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred             Ccccc-eeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence            43221 1111 1123457899999999765       23 4777774

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=7.1e-23  Score=200.58  Aligned_cols=243  Identities=15%  Similarity=0.213  Sum_probs=168.0

Q ss_pred             cCCCcEEEEEECCC---CCEEEEEeCCCcEEEEecCCce-eeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--c
Q 012367          220 AHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVA-ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--E  293 (465)
Q Consensus       220 ~H~~~I~~l~fspd---g~~LaSgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  293 (465)
                      +|.++|++++|+|+   |.+|++|+.||.|++||+.+.. ...........+........+.+..............  .
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            79999999999999   6999999999999999999876 3333322222221110000000001111111111111  1


Q ss_pred             eeeecC--Ccceeeecccc----ceEEEE----ecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC--
Q 012367          294 VFQIEE--SPLQELHGHKG----DVLDLA----WSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--  360 (465)
Q Consensus       294 ~~~~~~--~~~~~~~gh~~----~V~~l~----~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~--  360 (465)
                      +|++..  .++..+..|.+    .|.+++    |+|+ .+|++++.|+.|++||++++++.....|...|.+++|+|.  
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence            233322  25666766655    899998    5665 4899999999999999999999888889999999999996  


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEE------ecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeee-----
Q 012367          361 DDNYFISGSIDGKVRIWGVCEKRVV------DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLE-----  428 (465)
Q Consensus       361 ~~~~l~sgs~Dg~I~iwd~~~~~~~------~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~-----  428 (465)
                      ++++|++|+.||.|++||++++...      ...+|...|++++|+|+++ +|++|+.||.|++||+........     
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g  302 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG  302 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence            6899999999999999999876533      2338999999999999998 899999999999999986543210     


Q ss_pred             -------EeeecCcccccCCceeeEEEeecCCc-------c-ceeeeec
Q 012367          429 -------KVDFHDRKKTSGNKITGIQGRISKNY-------D-NFRRFQT  462 (465)
Q Consensus       429 -------~~~~~~~~~~~~~~It~~~f~p~gs~-------d-~~~~~~~  462 (465)
                             ..........+...|+++.|+|++.+       | .+++|+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence                   00000011224578999999998643       3 3667764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.2e-23  Score=229.55  Aligned_cols=195  Identities=13%  Similarity=0.127  Sum_probs=161.2

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .+|.+.|++|+|+|++++||+|+.||+|+||+..+...                                          
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~------------------------------------------   51 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV------------------------------------------   51 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE------------------------------------------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE------------------------------------------
Confidence            48999999999999999999999999999999865322                                          


Q ss_pred             CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                         .. ...|...|.+++|+|+.+|++++.|++|+|||+.+++++..+.|...|++++|+| +++++++|+.||.|++||
T Consensus        52 ---~~-~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd  126 (902)
T 2oaj_A           52 ---VI-KLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYD  126 (902)
T ss_dssp             ---EE-ECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEEE
T ss_pred             ---EE-EcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence               11 1247789999999996689999999999999999999999999889999999999 999999999999999999


Q ss_pred             CCCCeEE------------ecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCceeeeEeeecC-----------
Q 012367          379 VCEKRVV------------DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-----------  434 (465)
Q Consensus       379 ~~~~~~~------------~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~-----------  434 (465)
                      +.++.+.            ...+|...|++++|+|+ +..|++|+.||.| +||+.+++.. ..+..+.           
T Consensus       127 ~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-~~~~~~~~~g~~~~~~~~  204 (902)
T 2oaj_A          127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-QSFIYELPPFAPGGDFSE  204 (902)
T ss_dssp             TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-EEECCCBCTTCCCSTTCC
T ss_pred             CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-EEEecccCCcCCCccccc
Confidence            9988764            23568899999999996 5789999999999 9999987543 2333320           


Q ss_pred             -cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          435 -RKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       435 -~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                       ....+...|+++.|+|+|.+      | .+++|+.
T Consensus       205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence             00112367999999999753      4 4788875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=1.1e-23  Score=206.78  Aligned_cols=201  Identities=21%  Similarity=0.402  Sum_probs=161.1

Q ss_pred             cchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          213 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ...+.+.+|.+.|++++|+| ++++|++|+.||.|++||+.+......                                
T Consensus       106 ~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------  153 (366)
T 3k26_A          106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI--------------------------------  153 (366)
T ss_dssp             CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE--------------------------------
T ss_pred             eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE--------------------------------
Confidence            34566789999999999999 999999999999999999987533211                                


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----------------------
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----------------------  347 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----------------------  347 (465)
                                +..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+.                       
T Consensus       154 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          154 ----------FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             ----------ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             ----------ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence                      11125799999999999975 99999999999999999876554332                       


Q ss_pred             ------CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---------------EEecccCCCCeEEEEEeeC--CC
Q 012367          348 ------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR---------------VVDWADVRDVISAICYIPD--GK  404 (465)
Q Consensus       348 ------h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~---------------~~~~~~~~~~V~sv~~spd--g~  404 (465)
                            |...|.+++|+   ++++++++.|+.|++||+.++.               +..+..|...|++++|+|+  ++
T Consensus       224 ~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  300 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK  300 (366)
T ss_dssp             EEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred             cccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence                  88899999997   5799999999999999997653               3346778899999999999  99


Q ss_pred             EEEEEEcCCcEEEEEecCCceeee---EeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          405 GFIVGSITGTCHFYKASGNDLKLE---KVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       405 ~l~sgs~dG~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      +|++|+.||.|++||+.+++....   .+..+.    +...|+++.|+|++.+      | .+++|+.
T Consensus       301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK----CGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEEEECTTSCEEEEECCSSSGGGCEEEEECCTT----CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEEEecCCcEEEEECCCCCCccccceEEcccc----cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            999999999999999998764321   222221    2478999999998654      3 3667763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=3.9e-23  Score=200.51  Aligned_cols=205  Identities=17%  Similarity=0.283  Sum_probs=140.3

Q ss_pred             chhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceee---------eeeecCCCCcccccCCCeEEeccC-
Q 012367          214 TSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAAS---------CKSFTDDGGFGSNAKEGKIKFGKK-  281 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-  281 (465)
                      ....+.+|.++|++++|+|  ++++|++|+.||+|++||+.+....         ........      ....+.+... 
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~  122 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG------SLYSVKFAPAH  122 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS------CEEEEEECCGG
T ss_pred             ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC------ceeEEEEcCCC
Confidence            3456789999999999999  6999999999999999999875321         11111000      0111222222 


Q ss_pred             -CCCceeEecCCc--eeeecCCcce-ee-------------eccccceEEEEecCC----CEEEEEeCCCeEEEEeCCCC
Q 012367          282 -KSSHVPVVIPDE--VFQIEESPLQ-EL-------------HGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCN  340 (465)
Q Consensus       282 -~~~~~~~~~~~~--~~~~~~~~~~-~~-------------~gh~~~V~~l~~s~~----~~l~s~s~DgtV~lWD~~~~  340 (465)
                       ............  +|++...... .+             .+|...|.+++|+|+    .++++++.|+.+.+|+...+
T Consensus       123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~  202 (351)
T 3f3f_A          123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG  202 (351)
T ss_dssp             GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred             CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence             111122222222  2332332211 00             146667777777763    36777777777766666665


Q ss_pred             eE--eEEe-cCCCceEEEEEccCCC----CEEEEEeCCCcEEEEeCCCC-------------------------------
Q 012367          341 QC--LNVF-DHHNYVTCVQFNPIDD----NYFISGSIDGKVRIWGVCEK-------------------------------  382 (465)
Q Consensus       341 ~~--l~~~-~h~~~V~~i~fsp~~~----~~l~sgs~Dg~I~iwd~~~~-------------------------------  382 (465)
                      ..  +..+ .|...|++++|+| ++    ++|++|+.||.|++||++++                               
T Consensus       203 ~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
T 3f3f_A          203 KLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD  281 (351)
T ss_dssp             CEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred             ceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence            54  4444 4888999999999 76    89999999999999999763                               


Q ss_pred             ---------------e-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          383 ---------------R-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       383 ---------------~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                                     + +..+.+|...|++++|+|++++|++|+.||.|++|++..++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             ---------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             cccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence                           2 233667999999999999999999999999999999997654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=2.5e-23  Score=227.20  Aligned_cols=198  Identities=14%  Similarity=0.282  Sum_probs=166.5

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++.                                     
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------------------------------------   46 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------------------------------------   46 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------------------------------------
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------------------------------------
Confidence            3457788999999999999999999999999999999998643                                     


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                              .+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.+++.+..+. |...|++++|+| ++.+|++|+.
T Consensus        47 --------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  117 (814)
T 3mkq_A           47 --------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD  117 (814)
T ss_dssp             --------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred             --------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcC
Confidence                    355677899999999999975 89999999999999999999988885 899999999999 9999999999


Q ss_pred             CCcEEEEeCCCC-eEE-ecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367          371 DGKVRIWGVCEK-RVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (465)
Q Consensus       371 Dg~I~iwd~~~~-~~~-~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~  447 (465)
                      ||.|++||+.++ ... .+.+|...|.+++|+| ++..|++|+.||.|++||+.++.........      +...+..+.
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~------~~~~v~~~~  191 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVD  191 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC------CTTCCCEEE
T ss_pred             CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC------CCCCEEEEE
Confidence            999999999876 443 4678999999999999 8999999999999999999876554332211      225688888


Q ss_pred             Eee--cCC------cc-ceeeeec
Q 012367          448 GRI--SKN------YD-NFRRFQT  462 (465)
Q Consensus       448 f~p--~gs------~d-~~~~~~~  462 (465)
                      |+|  ++.      .| .+++|+.
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEET
T ss_pred             EEECCCCCEEEEEeCCCEEEEEEC
Confidence            888  442      23 4666664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=4.5e-23  Score=205.67  Aligned_cols=238  Identities=15%  Similarity=0.263  Sum_probs=170.1

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce------eeeeeecCCCCcccccCCCeEEeccC----C-
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA------ASCKSFTDDGGFGSNAKEGKIKFGKK----K-  282 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  282 (465)
                      ..+.+.+|.++|++|+|+|  ++||+|+.||+|+||++.+..      ...........+..      +.+...    . 
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~~~~~g~   79 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH------VDVLQAIERDAF   79 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEE------EEEEEEEETTTE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEE------EEEecccccCCc
Confidence            4467889999999999999  799999999999999998866      33333322222111      111111    1 


Q ss_pred             --CCceeEecCC--ceeeecC-Cc-----ceeeecc-----ccceEEEEec----CCC-E-EEEEeCCCeEEEEeCCC--
Q 012367          283 --SSHVPVVIPD--EVFQIEE-SP-----LQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVGC--  339 (465)
Q Consensus       283 --~~~~~~~~~~--~~~~~~~-~~-----~~~~~gh-----~~~V~~l~~s----~~~-~-l~s~s~DgtV~lWD~~~--  339 (465)
                        ...+.....+  .+|.+.. ..     +..+.+|     ...|.+++|+    |++ + |++++.|+.|++||+.+  
T Consensus        80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           80 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             cccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence              1111111112  2344433 33     6778888     5999999999    865 7 99999999999999988  


Q ss_pred             ----CeEeE-----Ee--------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-ccc---C---CCCeE
Q 012367          340 ----NQCLN-----VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RDVIS  395 (465)
Q Consensus       340 ----~~~l~-----~~--------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~---~---~~~V~  395 (465)
                          +.++.     .+        .|...|++++|+| ++ +|++|+.|+.|++||+++++.+. +..   |   ...|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence                65554     54        2788999999999 88 99999999999999999887765 555   7   89999


Q ss_pred             EEEEeeCCCEEEEEEcC---CcEEEEEecCCceeeeEeeecC-------cccccCCceeeEEEeecCCc------c-cee
Q 012367          396 AICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQGRISKNY------D-NFR  458 (465)
Q Consensus       396 sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~It~~~f~p~gs~------d-~~~  458 (465)
                      +++|+|++++|++++.|   |.|++||+.+++... .+....       ....+...|+++.|+|++.+      | .++
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            99999999999999999   999999998876533 222200       00014478999999998644      3 367


Q ss_pred             eeec
Q 012367          459 RFQT  462 (465)
Q Consensus       459 ~~~~  462 (465)
                      +|+.
T Consensus       317 iwd~  320 (397)
T 1sq9_A          317 FWDV  320 (397)
T ss_dssp             EEET
T ss_pred             EEEc
Confidence            7765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.6e-23  Score=208.48  Aligned_cols=209  Identities=13%  Similarity=0.266  Sum_probs=156.4

Q ss_pred             chhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCce------eeeeeecCCCCcccccCCCeEEeccCCCCce
Q 012367          214 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVA------ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (465)
                      ....+.+|.+.|++++|+|+ +++|++|+.||+|++||+.+..      .........   ........+.+........
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM---SSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC---CSSCCCCEEEECSSCTTEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc---CCCCCeeEEEeCCCCCcEE
Confidence            44667899999999999998 8999999999999999998765      211110000   0111122222222212222


Q ss_pred             eEec-CC--ceeeec-CCcceeeecc------ccceEEEEecCCC--EEEEEeCCC---eEEEEeCCCC-eEeEEec--C
Q 012367          287 PVVI-PD--EVFQIE-ESPLQELHGH------KGDVLDLAWSNSN--YLLSCSMDK---TVRMWQVGCN-QCLNVFD--H  348 (465)
Q Consensus       287 ~~~~-~~--~~~~~~-~~~~~~~~gh------~~~V~~l~~s~~~--~l~s~s~Dg---tV~lWD~~~~-~~l~~~~--h  348 (465)
                      .... ..  .+|++. .+++..+..|      ...|.+++|+|++  ++++++.|+   .|++||++++ .++..+.  |
T Consensus       182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~  261 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH  261 (416)
T ss_dssp             EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred             EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence            2211 11  123332 3344555555      7899999999974  899999999   9999999986 5666664  8


Q ss_pred             CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce
Q 012367          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ...|++++|+|.++++|++++.|+.|++||+.+++.+. +..|...|++++|+|++ .+|++++.||.|++|++.+...
T Consensus       262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            89999999999788999999999999999999887665 67899999999999999 8999999999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=4.9e-23  Score=202.23  Aligned_cols=196  Identities=18%  Similarity=0.344  Sum_probs=157.4

Q ss_pred             cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       220 ~H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .|.+.|++++|+|+    |++|++|+.||.|++||+.+.                                         
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----------------------------------------  105 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-----------------------------------------  105 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-----------------------------------------
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-----------------------------------------
Confidence            47789999999999    679999999999999999864                                         


Q ss_pred             eecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEccCCCCEEEEEe
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                          +.+..+.+|...|.+++|+| + .+|++++.|++|++||+.+++.+..+    .|...|.+++|+| ++++|++++
T Consensus       106 ----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  180 (366)
T 3k26_A          106 ----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG  180 (366)
T ss_dssp             ----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence                23556678999999999998 5 48999999999999999999999987    5889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEe-----------------------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          370 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-----------------------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      .|+.|++||+++++...                             ...|...|.+++|+  +++|++++.||.|++||+
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            99999999998865432                             12288999999999  779999999999999999


Q ss_pred             cCCceeeeEe-------eecCcccccCCceeeEEEeec--CCc------c-ceeeeecC
Q 012367          421 SGNDLKLEKV-------DFHDRKKTSGNKITGIQGRIS--KNY------D-NFRRFQTP  463 (465)
Q Consensus       421 ~~~~~~~~~~-------~~~~~~~~~~~~It~~~f~p~--gs~------d-~~~~~~~p  463 (465)
                      .+........       ........+...|+.+.|+|+  +.+      | .+++|+..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence            8765411100       000011123457888888888  443      3 36777653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=3.1e-23  Score=202.38  Aligned_cols=236  Identities=14%  Similarity=0.124  Sum_probs=172.9

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce----eeeeeecCCCCcccccCCCeEEeccCCC-CceeEecC
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA----ASCKSFTDDGGFGSNAKEGKIKFGKKKS-SHVPVVIP  291 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  291 (465)
                      ...+|.+.|++++|+|++++||+|+.||.|+||++.+..    ..... .....+.      .+.+..... ........
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~------~~~~~~~~~~~l~~~~~d   78 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLL------CCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEE------EEEEEESSSEEEEEEETT
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceE------EEEECCCCCcEEEEEcCC
Confidence            345899999999999999999999999999999998765    22221 1111111      111111111 11111112


Q ss_pred             C--ceeee-cCCcceeeec--cccceEEEEecCCCEEEEEeCCCeEEEEeCCC---------CeEeEEecCCCceEEEEE
Q 012367          292 D--EVFQI-EESPLQELHG--HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQF  357 (465)
Q Consensus       292 ~--~~~~~-~~~~~~~~~g--h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~---------~~~l~~~~h~~~V~~i~f  357 (465)
                      +  .+|++ .......+.+  |...|.+++|+|+++|++++.|++|++||+.+         ++++..+.|...|.+++|
T Consensus        79 g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            2  23444 5555677888  99999999999966999999999999999988         777777889999999999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCC-CeE---EecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCC-----ceee
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCE-KRV---VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN-----DLKL  427 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~-~~~---~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~-----~~~~  427 (465)
                      +| ++  +++++.|+.|++||+++ +..   .....+...|.+++|+| +++++++|+.||.|++|++...     ....
T Consensus       159 ~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          159 NS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             cC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            98 55  99999999999999988 432   23556888999999999 9999999999999999999876     1223


Q ss_pred             eEeeecCcc---cccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          428 EKVDFHDRK---KTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       428 ~~~~~~~~~---~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ..+..+...   ..+...|+++.|+|++.+      | .+++|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            333333211   012358999999998654      3 4677764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=1.1e-22  Score=206.62  Aligned_cols=211  Identities=20%  Similarity=0.349  Sum_probs=163.8

Q ss_pred             ccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ......+.+|.+.|++|+|+|++. +|++|+.||+|++|++.........                              
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------  220 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV------------------------------  220 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE------------------------------
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce------------------------------
Confidence            344567789999999999999998 9999999999999999863211000                              


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCC---eEeEEe-cCCCceEEEEEccCCCCE
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~---~~l~~~-~h~~~V~~i~fsp~~~~~  364 (465)
                              ..+...+.+|...|.+++|+| + .+|++++.|+.|++||++++   .++..+ .|...|++++|+|....+
T Consensus       221 --------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  292 (430)
T 2xyi_A          221 --------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI  292 (430)
T ss_dssp             --------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             --------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCE
Confidence                    023456678999999999998 3 48999999999999999987   466666 688999999999933447


Q ss_pred             EEEEeCCCcEEEEeCCC-Ce-EEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceee----------eEee
Q 012367          365 FISGSIDGKVRIWGVCE-KR-VVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKL----------EKVD  431 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~-~~-~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~----------~~~~  431 (465)
                      |++|+.||.|++||+++ +. +..+..|...|++++|+|+++ +|++++.||.|++||+.......          ..+.
T Consensus       293 l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  372 (430)
T 2xyi_A          293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF  372 (430)
T ss_dssp             EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEE
T ss_pred             EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEE
Confidence            99999999999999987 33 445778999999999999995 69999999999999998732110          1111


Q ss_pred             ecCcccccCCceeeEEEeecCC-------ccc-eeeeecC
Q 012367          432 FHDRKKTSGNKITGIQGRISKN-------YDN-FRRFQTP  463 (465)
Q Consensus       432 ~~~~~~~~~~~It~~~f~p~gs-------~d~-~~~~~~p  463 (465)
                      .+   ..+...|+++.|+|++.       .|+ +++|..+
T Consensus       373 ~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          373 IH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             Ec---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            11   12446899999999876       243 6777653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=5e-23  Score=209.14  Aligned_cols=204  Identities=21%  Similarity=0.330  Sum_probs=163.0

Q ss_pred             hccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          218 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       218 l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      +.+|.+.|++++|+|+ +.+||+|+.||.|+||++........                               .    .
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------------------------~----~  168 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------------------------P----S  168 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------------------------T----T
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------------------------c----c
Confidence            4589999999999997 67999999999999999975211000                               0    0


Q ss_pred             ecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeE-------eEEe-cCCCceEEEEEccCCCCEEE
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~-------l~~~-~h~~~V~~i~fsp~~~~~l~  366 (465)
                      ....++..+.+|...|.+++|+|++  +|++|+.||+|++||+.++..       ...+ .|...|.+++|+|.++.+|+
T Consensus       169 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  248 (430)
T 2xyi_A          169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG  248 (430)
T ss_dssp             CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred             ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence            0124567788999999999999863  899999999999999987321       3444 58889999999997789999


Q ss_pred             EEeCCCcEEEEeCCCC----eEEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367          367 SGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~----~~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~  441 (465)
                      +++.|+.|++||++++    .+..+..|...|++++|+|++. .|++|+.||.|++||++.....+..+..|      ..
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h------~~  322 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH------KD  322 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC------SS
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC------CC
Confidence            9999999999999876    2334668999999999999997 68899999999999999865544444433      36


Q ss_pred             ceeeEEEeecCCc--------cceeeeec
Q 012367          442 KITGIQGRISKNY--------DNFRRFQT  462 (465)
Q Consensus       442 ~It~~~f~p~gs~--------d~~~~~~~  462 (465)
                      .|++++|+|++.+        ..+++|+.
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            8999999998743        34777764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2e-22  Score=202.12  Aligned_cols=231  Identities=11%  Similarity=0.215  Sum_probs=168.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC----ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CCc-
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PDE-  293 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-  293 (465)
                      .|.+.|++++|+|++++||+|+.||.|++|++.+    .............      ...+.+............ ... 
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~l~s~~~dg~v  138 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS------VKTVKFNAKQDNVLASGGNNGEI  138 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC------CCEEEECSSSTTBEEEECSSSCE
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc------eEEEEEcCCCCCEEEEEcCCCeE
Confidence            6899999999999999999999999999999987    2222222222111      112222222111111111 111 


Q ss_pred             -eeeecCC----------cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecC-------CCceE
Q 012367          294 -VFQIEES----------PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVT  353 (465)
Q Consensus       294 -~~~~~~~----------~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h-------~~~V~  353 (465)
                       +|++...          ....+.+|...|.+++|+|+  .+|++++.|++|++||+.+++++..+..       ...|.
T Consensus       139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred             EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence             2333221          12234679999999999997  4899999999999999999999988853       67899


Q ss_pred             EEEEccCCCCEEEEEeCCC---cEEEEeCCCC-eEEe-cc-cCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCcee
Q 012367          354 CVQFNPIDDNYFISGSIDG---KVRIWGVCEK-RVVD-WA-DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       354 ~i~fsp~~~~~l~sgs~Dg---~I~iwd~~~~-~~~~-~~-~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +++|+|.+..++++++.|+   .|++||++++ .... +. +|...|++++|+| ++++|++++.||.|++||+.+++..
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            9999993347999999998   9999999985 3433 55 7999999999999 9999999999999999999887543


Q ss_pred             eeEeeecCcccccCCceeeEEEeecC-------Ccc-ceeeeecC
Q 012367          427 LEKVDFHDRKKTSGNKITGIQGRISK-------NYD-NFRRFQTP  463 (465)
Q Consensus       427 ~~~~~~~~~~~~~~~~It~~~f~p~g-------s~d-~~~~~~~p  463 (465)
                       ..+..      +...|+++.|+|++       +.| .+++|+..
T Consensus       299 -~~~~~------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          299 -SQFPA------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             -EEEEC------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             -eeecC------CCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence             23332      33679999999976       234 36777753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.7e-22  Score=199.88  Aligned_cols=235  Identities=17%  Similarity=0.258  Sum_probs=168.2

Q ss_pred             ccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEec----CCcee------eeeeecCCCCcc----cccCCCeEEeccCCC
Q 012367          219 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVAA------SCKSFTDDGGFG----SNAKEGKIKFGKKKS  283 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~----~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~  283 (465)
                      ..|.++|++++|+|+|+ +||+|+.||.|++|++    .++..      ............    .......+.+.....
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            35679999999999999 9999999999999999    77662      222222111100    000111122222211


Q ss_pred             CceeEecCC--ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--------------
Q 012367          284 SHVPVVIPD--EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--------------  346 (465)
Q Consensus       284 ~~~~~~~~~--~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--------------  346 (465)
                      ..+.....+  .+|+.....+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+              
T Consensus       122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            112111222  23444567778888999999999999975 8999999999999999877655432              


Q ss_pred             -------------------------------------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          347 -------------------------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       347 -------------------------------------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                                                                 .|...|.+++|+| ++++|++++.|+.|++||+.+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBS
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCc
Confidence                                                       2567899999999 99999999999999999999876


Q ss_pred             EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-
Q 012367          384 VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-  455 (465)
Q Consensus       384 ~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-  455 (465)
                      .+. +..|...|.+++|+|++ .+++++.||.|++||+.+++... .+..      +...|+++.|+|++.+      | 
T Consensus       281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~------~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA-LSIV------DGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE-EEEC------TTCCEEEEEECTTSSEEEEEETTS
T ss_pred             cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE-eccc------CCccEEEEEEcCCCCEEEEEECCC
Confidence            554 66799999999999999 99999999999999998876432 2322      2367999999998654      3 


Q ss_pred             ceeeeec
Q 012367          456 NFRRFQT  462 (465)
Q Consensus       456 ~~~~~~~  462 (465)
                      .+++|+.
T Consensus       353 ~i~i~~~  359 (425)
T 1r5m_A          353 QVNVYDL  359 (425)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEEC
Confidence            3666654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=1.3e-23  Score=211.18  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=144.4

Q ss_pred             chhhHHhhccccccccccccchhhhccCCCcEEEEEECC--------CCCEEEEEeCCCcEEEEecCCceeeeeeecCCC
Q 012367          194 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP--------DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG  265 (465)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~  265 (465)
                      ...+++|.....  ..........+.||++.|++|+|+|        +|++|||||.|++|+|||+.+..          
T Consensus       110 d~~v~lw~~~~~--~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~----------  177 (393)
T 4gq1_A          110 DNTVRLIITKNE--TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG----------  177 (393)
T ss_dssp             TSCEEEEEEETT--EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE----------
T ss_pred             CCcEEEEECCCC--ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc----------
Confidence            445555543322  1122234467889999999999998        88999999999999999987632          


Q ss_pred             CcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEe
Q 012367          266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCL  343 (465)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l  343 (465)
                                                         ++..+.+|...|.+++|+|++  +|++++.|++|++||+.+++..
T Consensus       178 -----------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~  222 (393)
T 4gq1_A          178 -----------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA  222 (393)
T ss_dssp             -----------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred             -----------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence                                               344556788999999999974  7999999999999999887643


Q ss_pred             EEe--------------------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEE
Q 012367          344 NVF--------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISA  396 (465)
Q Consensus       344 ~~~--------------------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~s  396 (465)
                      ...                          .|...|.++.|.+.++..+++++.|+++++||+.+++... +..|...+..
T Consensus       223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~  302 (393)
T 4gq1_A          223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGP  302 (393)
T ss_dssp             --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------
T ss_pred             ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence            321                          3667889999985599999999999999999998765432 2233333322


Q ss_pred             ------------------EEEee--CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          397 ------------------ICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       397 ------------------v~~sp--dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                                        ..|+|  ++.++++|+.||+|++||+.++........       +...|.++.|+|+|.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-------~~~~V~svafspdG~~  373 (393)
T 4gq1_A          303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-------LGMPIVDFCWHQDGSH  373 (393)
T ss_dssp             -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-------CSSCEEEEEECTTSSE
T ss_pred             EEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-------CCCcEEEEEEcCCCCE
Confidence                              33444  344677788899999999998765433221       2357999999999876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.3e-23  Score=203.74  Aligned_cols=221  Identities=10%  Similarity=0.087  Sum_probs=151.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc-e--eeecCCc
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-V--FQIEESP  301 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~  301 (465)
                      .....+.+++.+||||+.||+|++||+.++..........  +........ .+.........++.... +  +......
T Consensus        39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~--v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPN--PRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             EECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEEC--CCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred             hhhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCC--ceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcc
Confidence            3344556788899999999999999999877655443111  111111111 11112222222222221 1  2222222


Q ss_pred             -ceeee-ccccceEEEEecC--CC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          302 -LQELH-GHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       302 -~~~~~-gh~~~V~~l~~s~--~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                       +..+. +|.+.|.+++|+|  ++ ++++++.|++|++||+.+++++..+  .|...|++++|+| ++.+|++|+.||.|
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i  194 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL  194 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence             33333 6778999999999  65 8999999999999999999987776  3556899999999 99999999999999


Q ss_pred             EEEeCCCCeEE--eccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce--eeEEEe
Q 012367          375 RIWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQGR  449 (465)
Q Consensus       375 ~iwd~~~~~~~--~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I--t~~~f~  449 (465)
                      +|||+++++..  .+.. |...|++++|+|+|.+|++++ ++.|++||++..+.......+..    +...+  ..+.|+
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  269 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDID  269 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEEC
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEEC
Confidence            99999988765  5666 999999999999999999999 55999999998754321100000    11222  458888


Q ss_pred             ecCCc
Q 012367          450 ISKNY  454 (465)
Q Consensus       450 p~gs~  454 (465)
                      |+|.+
T Consensus       270 ~~g~~  274 (343)
T 3lrv_A          270 DSGKN  274 (343)
T ss_dssp             TTSSE
T ss_pred             CCCCE
Confidence            87654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=8.9e-23  Score=203.16  Aligned_cols=233  Identities=13%  Similarity=0.118  Sum_probs=163.7

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--cee
Q 012367          219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVF  295 (465)
Q Consensus       219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  295 (465)
                      .+|.+.|++++|+| ++++|++|+.||.|++||+.+.... .........   .....+.+..............  .+|
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWD---YWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-EEECCCCSS---CCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-EEeccCCCC---CCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            47999999999999 7899999999999999999863322 222111100   0011111221111111111111  235


Q ss_pred             eecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCC----CeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC----NQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~----~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                      ++...++..+.+|...|.+++|+|++  +|++++.|++|++||+++    +.++..+.|...|++++|+|.++++|++++
T Consensus       191 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          191 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             ETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred             ECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence            55667888899999999999999975  899999999999999988    778888899999999999998889999999


Q ss_pred             CCCcEEEEeCCCCeEEe-ccc-------CC----------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEee
Q 012367          370 IDGKVRIWGVCEKRVVD-WAD-------VR----------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  431 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-~~~-------~~----------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~  431 (465)
                      .|+.|++||++++.... +..       |.          ..+..++|+|+|++  +|+.||.|++||+.+++... .+.
T Consensus       271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~-~l~  347 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH-QLR  347 (383)
T ss_dssp             SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE-EEC
T ss_pred             CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee-eec
Confidence            99999999998765322 222       22          23444666666666  67789999999998876632 332


Q ss_pred             ecCcccccCCceeeEEEeecCCc------cceeeeec
Q 012367          432 FHDRKKTSGNKITGIQGRISKNY------DNFRRFQT  462 (465)
Q Consensus       432 ~~~~~~~~~~~It~~~f~p~gs~------d~~~~~~~  462 (465)
                      .+.    +...+..+.|+|++.+      ..+++|+.
T Consensus       348 ~~~----~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          348 DPN----AAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             BTT----BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             CCC----CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence            221    2345666688887544      35777764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=9.3e-22  Score=200.90  Aligned_cols=238  Identities=19%  Similarity=0.299  Sum_probs=171.7

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc----CCCeEEeccCCCCcee
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGKIKFGKKKSSHVP  287 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  287 (465)
                      ......+.+|.+.|++++|+|++ +|++|+.||+|++||+.++............+....    ......+.........
T Consensus       152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~  230 (464)
T 3v7d_B          152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  230 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred             CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence            34556778999999999999988 999999999999999998876655443333221111    1111111111112222


Q ss_pred             EecCCceeee------------------cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cC
Q 012367          288 VVIPDEVFQI------------------EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DH  348 (465)
Q Consensus       288 ~~~~~~~~~~------------------~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h  348 (465)
                      ++........                  ....+..+.+|...|.++... ++++++++.|++|++||+.+++++..+ .|
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            2111100000                  001255678899999988543 368999999999999999999999988 48


Q ss_pred             CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ...|++++|+| +++++++|+.|+.|++||+.+++.+. +.+|...|.+++|+  +++|++|+.||+|++||+.+.....
T Consensus       310 ~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          310 TDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            89999999999 99999999999999999999888765 77899999999997  5799999999999999999865432


Q ss_pred             eEeeecCcccccCCceeeEEEeecC------Cccceeeeec
Q 012367          428 EKVDFHDRKKTSGNKITGIQGRISK------NYDNFRRFQT  462 (465)
Q Consensus       428 ~~~~~~~~~~~~~~~It~~~f~p~g------s~d~~~~~~~  462 (465)
                      ..   +     +...+..+.|+|++      +.+.+++|+.
T Consensus       387 ~~---~-----~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~  419 (464)
T 3v7d_B          387 SY---H-----HTNLSAITTFYVSDNILVSGSENQFNIYNL  419 (464)
T ss_dssp             EE---E-----CTTCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred             ee---c-----CCCCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence            21   1     22455666777764      3345777774

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=7.8e-23  Score=205.52  Aligned_cols=169  Identities=24%  Similarity=0.398  Sum_probs=144.9

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+.                                       
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---------------------------------------  249 (401)
T 4aez_A          209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---------------------------------------  249 (401)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS---------------------------------------
T ss_pred             eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC---------------------------------------
Confidence            34567899999999999999999999999999999999863                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC--EEEEEe--CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE-
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-  368 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s--~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg-  368 (465)
                            .++..+.+|...|.+++|+|++  ++++++  .|+.|++||+.+++++..+.+...|.+++|+| ++++++++ 
T Consensus       250 ------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  322 (401)
T 4aez_A          250 ------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTH  322 (401)
T ss_dssp             ------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEE
T ss_pred             ------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEe
Confidence                  2345566899999999999953  677765  79999999999999999999999999999999 99999994 


Q ss_pred             -eCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          369 -SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       369 -s~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                       +.||.|++||+.++....   +.+|...|.+++|+|+|++|++|+.||.|++|++.+++....
T Consensus       323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence             489999999999865443   567999999999999999999999999999999998776544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=2.4e-22  Score=203.56  Aligned_cols=210  Identities=10%  Similarity=0.235  Sum_probs=146.7

Q ss_pred             chhhhccCC------------CcEEEEEECCCC--CEEEEEeCCCcEEEEecCCceeeeeeecCCCC-------------
Q 012367          214 TSQEIQAHK------------GCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-------------  266 (465)
Q Consensus       214 ~~~~l~~H~------------~~I~~l~fspdg--~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-------------  266 (465)
                      ....+.+|.            +.|++++|+|++  .+|++|+.||+|++|++.+.............             
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            346677898            889999999998  79999999999999999764432110000000             


Q ss_pred             ---------------------cccccCCCeEEeccCCCCceeEecCC--ceeeec--CCcce-------eeeccccceEE
Q 012367          267 ---------------------FGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQIE--ESPLQ-------ELHGHKGDVLD  314 (465)
Q Consensus       267 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~-------~~~gh~~~V~~  314 (465)
                                           .........+.+.......+.. ...  .+|++.  ...+.       .+.+|...|.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  231 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA  231 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred             EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence                                 0000111122222221111111 111  123332  11222       35689999999


Q ss_pred             EEecCCC--EEEEEeCCCeEEEEeCCCCeE----eEEec-CCC------------ceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          315 LAWSNSN--YLLSCSMDKTVRMWQVGCNQC----LNVFD-HHN------------YVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       315 l~~s~~~--~l~s~s~DgtV~lWD~~~~~~----l~~~~-h~~------------~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      ++|+|++  +|++|+.|++|++||++++..    +..+. |..            .|.+++|+| ++++|++++. +.|+
T Consensus       232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVK  309 (447)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEE
T ss_pred             EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEE
Confidence            9999974  899999999999999999886    67774 444            899999999 9999999998 9999


Q ss_pred             EEeCCC-CeEEe-cccCCCC---------------eEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          376 IWGVCE-KRVVD-WADVRDV---------------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       376 iwd~~~-~~~~~-~~~~~~~---------------V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      |||+++ ++.+. +..|...               +..++|+|++++|++|+.||.|++||+.+++..
T Consensus       310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             EEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            999986 65544 4444321               334999999999999999999999999987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.6e-22  Score=202.46  Aligned_cols=221  Identities=13%  Similarity=0.152  Sum_probs=158.2

Q ss_pred             hhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecC--Cceeeeeeec--CCCCcccccCCCeEEeccCCCCceeEec
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFT--DDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      ....+|.+.|++++|+|+|++| |+|+.||+|+|||+.  ++........  ....+      ..+.+...+........
T Consensus        96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v------~~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B           96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP------NAISIAEDDTTVIIADK  169 (450)
T ss_dssp             ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE------EEEEECTTSSEEEEEET
T ss_pred             CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc------eEEEEcCCCCEEEEEeC
Confidence            4456899999999999999996 999999999999998  6554433321  11111      11112111111111111


Q ss_pred             CCceeee--c-CC----cceeeeccccceEEEEecCC---C-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEE
Q 012367          291 PDEVFQI--E-ES----PLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQF  357 (465)
Q Consensus       291 ~~~~~~~--~-~~----~~~~~~gh~~~V~~l~~s~~---~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~f  357 (465)
                      ...++.+  . ..    +...+.+|...|.+++|+|+   + +|++++.|++|++||+.++.++..+  .|...|++++|
T Consensus       170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  249 (450)
T 2vdu_B          170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC  249 (450)
T ss_dssp             TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEE
T ss_pred             CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEE
Confidence            1222222  1 11    33477889999999999998   6 8999999999999999999888774  58999999999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCeEEecc--------------------------cCCCCeEEEEEeeCCCEEEEEE-
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------------------------DVRDVISAICYIPDGKGFIVGS-  410 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~--------------------------~~~~~V~sv~~spdg~~l~sgs-  410 (465)
                      +  ++++|++|+.|+.|++||+.+++.+...                          .....|.+++|+|++++|++++ 
T Consensus       250 s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  327 (450)
T 2vdu_B          250 G--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE  327 (450)
T ss_dssp             C--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred             C--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence            9  8999999999999999999998765422                          2345799999999999999999 


Q ss_pred             cCCcEEEEEe--cCC-ceeee-EeeecCcccccCCceeeEEEeec
Q 012367          411 ITGTCHFYKA--SGN-DLKLE-KVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       411 ~dG~v~iwd~--~~~-~~~~~-~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .++.|++|++  ..+ ++... .+..+       ..|.++.|+|+
T Consensus       328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~-------~~v~~~~~~~~  365 (450)
T 2vdu_B          328 ATKCIIILEMSEKQKGDLALKQIITFP-------YNVISLSAHND  365 (450)
T ss_dssp             TCSEEEEEEECSSSTTCEEEEEEEECS-------SCEEEEEEETT
T ss_pred             CCCeEEEEEeccCCCCceeeccEeccC-------CceEEEEecCC
Confidence            8999999999  332 22222 33322       46888888885

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=2e-22  Score=230.38  Aligned_cols=193  Identities=19%  Similarity=0.397  Sum_probs=162.2

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++                                         
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-----------------------------------------  647 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-----------------------------------------  647 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------------------------------------
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------
Confidence            356799999999999999999999999999999999874                                         


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-CCCEEEEEeCCC
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDG  372 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~-~~~~l~sgs~Dg  372 (465)
                          ..+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|++++|+|. +..++++|+.|+
T Consensus       648 ----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          648 ----EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             ----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             ----CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence                2356677899999999999985 9999999999999999999999998 58899999999984 345899999999


Q ss_pred             cEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC-------cccccCCcee
Q 012367          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKIT  444 (465)
Q Consensus       373 ~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~It  444 (465)
                      .|++||+.++.... +.+|...|++++|+|+++.|++|+.||.|++||+.++..... +....       ........++
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~  802 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS-INVKRFFLSSEDPPEDVEVIVK  802 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE-EECCCCC--------CCCCCBC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce-ecccccccccCCccccccceEE
Confidence            99999999887664 778999999999999999999999999999999988765332 21111       0111234678


Q ss_pred             eEEEeecCCc
Q 012367          445 GIQGRISKNY  454 (465)
Q Consensus       445 ~~~f~p~gs~  454 (465)
                      ++.|+|+|.+
T Consensus       803 ~~~~s~dg~~  812 (1249)
T 3sfz_A          803 CCSWSADGDK  812 (1249)
T ss_dssp             CCCBCTTSSE
T ss_pred             EEEECCCCCE
Confidence            8888888654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.4e-23  Score=218.58  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=139.7

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .++.+|.+.|++++|+|++ +||+|+.||+|++||+.+..                                        
T Consensus       260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~----------------------------------------  298 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE----------------------------------------  298 (524)
T ss_dssp             EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS----------------------------------------
T ss_pred             EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC----------------------------------------
Confidence            4678999999999999865 89999999999999997521                                        


Q ss_pred             eecCCcceeeeccccceEEE--EecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCC--CceEEEEEccCCCCEEEEE
Q 012367          296 QIEESPLQELHGHKGDVLDL--AWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHH--NYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l--~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~--~~V~~i~fsp~~~~~l~sg  368 (465)
                          .+...+.+|...|.++  +|+|+  .+|+|||.|++|+|||+++++++..+ .|.  ..|.+++|+| ++..|+++
T Consensus       299 ----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~  373 (524)
T 2j04_B          299 ----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYS  373 (524)
T ss_dssp             ----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEE
T ss_pred             ----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEe
Confidence                2345677899999999  56776  48999999999999999988877666 344  3589999999 89999999


Q ss_pred             eCCCcEEEEeCCCCeE-EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          369 SIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~-~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +.|++|++||++++.. ..+.+|...|++|+|+|+|+.|++|+.||+|++||+...
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            9999999999998765 457789999999999999999999999999999997543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1e-22  Score=206.43  Aligned_cols=206  Identities=13%  Similarity=0.201  Sum_probs=146.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecC---CceeeeeeecCC-CCcccc---cCCCeEEec--c-CCCCceeEe
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT---SVAASCKSFTDD-GGFGSN---AKEGKIKFG--K-KKSSHVPVV  289 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~---~~~~~~~~~~~~-~~~~~~---~~~~~~~~~--~-~~~~~~~~~  289 (465)
                      +|.++|++|+|+|++++|++|+.||+|++||+.   .+.......... ......   .......+.  . .........
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            699999999999999999999999999999995   322221111000 000000   000000000  0 001111111


Q ss_pred             -cCC--ceeee-cCCcceeeec--cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccC
Q 012367          290 -IPD--EVFQI-EESPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI  360 (465)
Q Consensus       290 -~~~--~~~~~-~~~~~~~~~g--h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~  360 (465)
                       ...  .+|++ ..+++..+.+  |.+.|.+++|+|++ +|++|+.|++|++||+++++++..+  .|...|++++|+|.
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence             111  13333 2456777877  89999999999975 8999999999999999999999987  57779999977652


Q ss_pred             ---CCCEEEEEeCCCcEEEEeCCCCeEEe-ccc--------------------------CCCCeEEEEEeeCCCEEEEEE
Q 012367          361 ---DDNYFISGSIDGKVRIWGVCEKRVVD-WAD--------------------------VRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       361 ---~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~--------------------------~~~~V~sv~~spdg~~l~sgs  410 (465)
                         ++.+|++|+.|+.|++||+.+++.+. +.+                          |...|++++|+ ++++|++|+
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~  347 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE  347 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence               67799999999999999999877553 221                          56679999999 788999999


Q ss_pred             cCCcEEEEEecCCcee
Q 012367          411 ITGTCHFYKASGNDLK  426 (465)
Q Consensus       411 ~dG~v~iwd~~~~~~~  426 (465)
                      .||.|++||+.+++..
T Consensus       348 ~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          348 ATSSIVMFSLNELSSS  363 (437)
T ss_dssp             GGTEEEEEETTCGGGC
T ss_pred             CCCeEEEEECCCcccc
Confidence            9999999999877643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.90  E-value=9.4e-22  Score=207.18  Aligned_cols=226  Identities=20%  Similarity=0.277  Sum_probs=167.4

Q ss_pred             cchhhhccCCCc-EEEEEECC--CCCEEEEEeCCCcEEEEecCCc--------eeeeeeecCCCCcccccCCCeEEeccC
Q 012367          213 YTSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV--------AASCKSFTDDGGFGSNAKEGKIKFGKK  281 (465)
Q Consensus       213 ~~~~~l~~H~~~-I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (465)
                      ...+.+.+|.+. |++++|+|  ++++||+|+.||+|+|||+.++        ............+.      .+.+...
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~~~s~~  127 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS------DISWDFE  127 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE------EEEECTT
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE------EEEEeCC
Confidence            455778899999 99999999  9999999999999999999744        22222221111111      1111111


Q ss_pred             CCCceeEecC----Cceeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCC---
Q 012367          282 KSSHVPVVIP----DEVFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN---  350 (465)
Q Consensus       282 ~~~~~~~~~~----~~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~---  350 (465)
                      ..........    ..++.+ ....+..+.+|...|.+++|+|++  .+++++.|++|++||+.+++++..+. |..   
T Consensus       128 ~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  207 (615)
T 1pgu_A          128 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  207 (615)
T ss_dssp             SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             CCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCc
Confidence            1111111110    011111 245677888999999999999986  79999999999999999999999885 878   


Q ss_pred             ceEEEEEccCC-CCEEEEEeCCCcEEEEeCCCCeEEecc-----cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          351 YVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       351 ~V~~i~fsp~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~-----~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .|++++|+| + +++|++++.|+.|++||+.+++.+...     .|...|.+++|+ ++++|++++.||.|++||+.+++
T Consensus       208 ~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          208 FVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             CEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence            899999999 7 999999999999999999998877644     899999999999 99999999999999999999876


Q ss_pred             eeeeEeeecCcccccCCceeeEEEe
Q 012367          425 LKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      ... .+..+.  ......+.++.+.
T Consensus       286 ~~~-~~~~~~--~~~~~~~~~~~~~  307 (615)
T 1pgu_A          286 CVQ-KWTLDK--QQLGNQQVGVVAT  307 (615)
T ss_dssp             EEE-EEECCT--TCGGGCEEEEEEE
T ss_pred             EEE-EEcCCC--CcccCceeEEEeC
Confidence            533 333331  1122455566553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=3.9e-22  Score=197.52  Aligned_cols=201  Identities=15%  Similarity=0.130  Sum_probs=130.9

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecCCc
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      .+++.+|.+.|++++|+|+|++||+|+.|| ++||++.+............... .......+.+.........      
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~------   84 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH------   84 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEE------
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEE------
Confidence            345678999999999999999999999876 78999987655443322111100 0001111111111111111      


Q ss_pred             eeeec-CCcceeeeccccceEEEEecCC------------------------------------CEEEE--EeCCCeEEE
Q 012367          294 VFQIE-ESPLQELHGHKGDVLDLAWSNS------------------------------------NYLLS--CSMDKTVRM  334 (465)
Q Consensus       294 ~~~~~-~~~~~~~~gh~~~V~~l~~s~~------------------------------------~~l~s--~s~DgtV~l  334 (465)
                      +|+.. .+++..+. |...|.+++++++                                    ++++.  |+.||+|++
T Consensus        85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           85 IWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            11111 11222222 2333444433322                                    44444  578999999


Q ss_pred             EeCCCCe----------------EeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc-EEEEeCCCCeEEe-cc-c-CCCC
Q 012367          335 WQVGCNQ----------------CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-WA-D-VRDV  393 (465)
Q Consensus       335 WD~~~~~----------------~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~-I~iwd~~~~~~~~-~~-~-~~~~  393 (465)
                      ||+.++.                ++..+ .|...|++++|+| ++++|++|+.|++ |+|||+++++.+. +. + |...
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~  242 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD  242 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence            9998765                14555 6999999999999 9999999999998 9999999887775 44 4 8999


Q ss_pred             eEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          394 ISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      |++++|+|+|++|++|+.||+|++||+....
T Consensus       243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999999999999999999999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=7.2e-22  Score=201.72  Aligned_cols=227  Identities=14%  Similarity=0.272  Sum_probs=164.7

Q ss_pred             cchhhhccCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc--------------cccCCC-e
Q 012367          213 YTSQEIQAHKGCIWTLKFS--PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG--------------SNAKEG-K  275 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fs--pdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--------------~~~~~~-~  275 (465)
                      ...+.+.+|.+.|++++|+  +++++|++|+.||+|++||+.+...............              ...... .
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  273 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  273 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence            3456778999999999998  5788999999999999999987543321111000000              000000 0


Q ss_pred             EEeccCCCCceeEecCC--ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCC
Q 012367          276 IKFGKKKSSHVPVVIPD--EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHN  350 (465)
Q Consensus       276 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~  350 (465)
                      ..+.............+  .+|++ ..+++..+.+|...|.+++|+|++ ++++|+.|++|++||+.+++++..+ .|..
T Consensus       274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~  353 (464)
T 3v7d_B          274 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA  353 (464)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Confidence            00111111111111111  13333 245677888999999999999974 9999999999999999999999998 5889


Q ss_pred             ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~  430 (465)
                      .|.+++|+   ++++++|+.||.|++||+.++.......+...+..++|+|+++++++|+ ||.|++||+.++++.....
T Consensus       354 ~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~  429 (464)
T 3v7d_B          354 LVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI  429 (464)
T ss_dssp             CEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT
T ss_pred             cEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh
Confidence            99999996   5899999999999999999887766666788899999999999999998 9999999999887643211


Q ss_pred             eecCcccccCCceeeEEEe
Q 012367          431 DFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       431 ~~~~~~~~~~~~It~~~f~  449 (465)
                            ..+...|.++.|+
T Consensus       430 ------~~~~~~v~~v~~~  442 (464)
T 3v7d_B          430 ------LKDADQIWSVNFK  442 (464)
T ss_dssp             ------TTTCSEEEEEEEE
T ss_pred             ------ccCCCcEEEEEec
Confidence                  2234778888886

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=7.7e-22  Score=200.43  Aligned_cols=232  Identities=19%  Similarity=0.371  Sum_probs=170.0

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      .....+.+.+|.+.|++++|  ++++|++|+.||+|++||+.++............+..........+.........   
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~---  236 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA---  236 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEE---
T ss_pred             CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEE---
Confidence            34455678899999999999  7889999999999999999988766555443333222222121111111111111   


Q ss_pred             CCceeeecC-Ccc---eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEE
Q 012367          291 PDEVFQIEE-SPL---QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       291 ~~~~~~~~~-~~~---~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l  365 (465)
                         +|++.. ...   ..+.+|...|.+++| .++++++|+.|++|++||+.+++++..+. |...|.+++|   +++++
T Consensus       237 ---vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l  309 (435)
T 1p22_A          237 ---VWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRLV  309 (435)
T ss_dssp             ---EEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---ETTEE
T ss_pred             ---EEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe---CCCEE
Confidence               233321 222   567899999999999 44699999999999999999999999885 8889999999   46899


Q ss_pred             EEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce--------eeeEeeecCcc
Q 012367          366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--------KLEKVDFHDRK  436 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~--------~~~~~~~~~~~  436 (465)
                      ++|+.||.|++||++++..+. +.+|...|.+++|  ++.+|++|+.||.|++||+.++..        ....+..    
T Consensus       310 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----  383 (435)
T 1p22_A          310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE----  383 (435)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC----
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC----
Confidence            999999999999999887665 7789999999999  788999999999999999976541        2223322    


Q ss_pred             cccCCceeeEEEee----cCCcc-ceeeeec
Q 012367          437 KTSGNKITGIQGRI----SKNYD-NFRRFQT  462 (465)
Q Consensus       437 ~~~~~~It~~~f~p----~gs~d-~~~~~~~  462 (465)
                        +...|++++|..    .++.| ++++|+.
T Consensus       384 --h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          384 --HSGRVFRLQFDEFQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             --CSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred             --CCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence              345788887632    24445 4777764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.5e-22  Score=224.17  Aligned_cols=174  Identities=13%  Similarity=0.142  Sum_probs=139.3

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.||...+.+++|+|+|++||||+.||+|++||+.++....                                 ...+
T Consensus       429 ~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------------------------------~~~~  475 (902)
T 2oaj_A          429 YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------------------------------NASF  475 (902)
T ss_dssp             CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------------------------------TBCE
T ss_pred             CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------------------------------CceE
Confidence            3577888888889999999999999999999999998752100                                 0000


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC----------------------------------
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----------------------------------  340 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~----------------------------------  340 (465)
                      ..... ...-.+|...|.+++|+|++ +|++|+.|++|+|||+.++                                  
T Consensus       476 ~~~l~-~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (902)
T 2oaj_A          476 EVNLS-RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR  554 (902)
T ss_dssp             EEEHH-HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred             Eeech-hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence            00000 00012799999999999985 9999999999999999765                                  


Q ss_pred             -----------eEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe------cc-cCCCCeEEEEEe-
Q 012367          341 -----------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------WA-DVRDVISAICYI-  400 (465)
Q Consensus       341 -----------~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~------~~-~~~~~V~sv~~s-  400 (465)
                                 +++..+ .|.+.|++++|+| ++ +||+|+.|++|+|||+.++.++.      +. +|...|++|+|+ 
T Consensus       555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~  632 (902)
T 2oaj_A          555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVI  632 (902)
T ss_dssp             GGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEE
T ss_pred             ccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEE
Confidence                       345666 4999999999999 99 99999999999999999887652      32 789999999999 


Q ss_pred             ----eCC---CEEEEEEcCCcEEEEEe---cCCce
Q 012367          401 ----PDG---KGFIVGSITGTCHFYKA---SGNDL  425 (465)
Q Consensus       401 ----pdg---~~l~sgs~dG~v~iwd~---~~~~~  425 (465)
                          |||   ++|++|+.||+|++||+   .+++.
T Consensus       633 ~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          633 MEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence                886   89999999999999999   55443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=1.3e-22  Score=196.52  Aligned_cols=158  Identities=13%  Similarity=0.087  Sum_probs=120.1

Q ss_pred             hhhhccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          215 SQEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fsp---dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ...+.+|...++.++|+|   ++.+|||||.|++|+|||+.+++..                                  
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l----------------------------------  216 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL----------------------------------  216 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE----------------------------------
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE----------------------------------
Confidence            345567888888888888   6789999999999999999986543                                  


Q ss_pred             CceeeecCCcceeeecc---ccceEEEEecCCCE-------------EEEEeCCCeEEEEeCCCCeEeEEe------cCC
Q 012367          292 DEVFQIEESPLQELHGH---KGDVLDLAWSNSNY-------------LLSCSMDKTVRMWQVGCNQCLNVF------DHH  349 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh---~~~V~~l~~s~~~~-------------l~s~s~DgtV~lWD~~~~~~l~~~------~h~  349 (465)
                                 +++.+|   ...|.+++|+|++.             +++|+.|++|++||..+++++..+      +|.
T Consensus       217 -----------~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~  285 (356)
T 2w18_A          217 -----------KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA  285 (356)
T ss_dssp             -----------EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred             -----------EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence                       334333   23566667777663             367899999999999999988765      354


Q ss_pred             CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeE-EEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~-sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      ..+.+..+   ++.++++|+.|++|+|||+.+++++. +.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus       286 ~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          286 GRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            45444444   47899999999999999999998776 566777655 6899999999999999999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.9e-22  Score=217.01  Aligned_cols=221  Identities=18%  Similarity=0.279  Sum_probs=171.3

Q ss_pred             CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  269 (465)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~  269 (465)
                      .....+.+|.....     .......+.+|.++|++++|+|+  +++|++|+.||+|++||+.++..             
T Consensus        28 ~~dg~I~vwd~~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-------------   89 (753)
T 3jro_A           28 SSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-------------   89 (753)
T ss_dssp             ETTTEEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-------------
T ss_pred             ECCCcEEEEecCCC-----CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-------------
Confidence            34455666643211     23445677899999999999998  99999999999999999876431             


Q ss_pred             ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCCe---Ee
Q 012367          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ---CL  343 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~~---~l  343 (465)
                                                    ..+..+.+|...|.+++|+|+  + ++++|+.||+|++||+.++.   ..
T Consensus        90 ------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           90 ------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             ------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             ------------------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence                                          134556789999999999986  4 99999999999999998873   23


Q ss_pred             EEecCCCceEEEEEccC------------CCCEEEEEeCCCcEEEEeCCCC----eEE-ecccCCCCeEEEEEeeC---C
Q 012367          344 NVFDHHNYVTCVQFNPI------------DDNYFISGSIDGKVRIWGVCEK----RVV-DWADVRDVISAICYIPD---G  403 (465)
Q Consensus       344 ~~~~h~~~V~~i~fsp~------------~~~~l~sgs~Dg~I~iwd~~~~----~~~-~~~~~~~~V~sv~~spd---g  403 (465)
                      ....|...|.+++|+|.            ++.++++|+.||.|++||++++    .+. .+.+|...|++++|+|+   +
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  219 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence            33368899999999994            4899999999999999999875    333 46789999999999999   8


Q ss_pred             CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          404 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       404 ~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ++|++|+.||.|++||+.++.........  ....+...|+++.|+|+|.+      | .+++|+.
T Consensus       220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          220 SYLASVSQDRTCIIWTQDNEQGPWKKTLL--KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             EEEEEEESSSCEEEEEESSSSSCCBCCBS--SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CEEEEEecCCEEEEecCCCCCCcceeEEe--ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            99999999999999999986433221111  11234578999999998643      3 3677764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=1.8e-21  Score=222.64  Aligned_cols=204  Identities=20%  Similarity=0.335  Sum_probs=158.9

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCc-eeEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH-VPVVI  290 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  290 (465)
                      ....+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++............+..      +.+....... .....
T Consensus       647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~l~sg~  720 (1249)
T 3sfz_A          647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC------CHFTNKSNHLLLATGS  720 (1249)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE------EEECSSSSCCEEEEEE
T ss_pred             CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE------EEEecCCCceEEEEEe
Confidence            3445677899999999999999999999999999999999988776655443332211      1111111111 11111


Q ss_pred             -CC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-------------------
Q 012367          291 -PD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------------------  346 (465)
Q Consensus       291 -~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-------------------  346 (465)
                       ..  .+|++. ...+..+.+|.+.|.+++|+|++ +|++++.||+|++||+.++.....+                   
T Consensus       721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1249)
T 3sfz_A          721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI  800 (1249)
T ss_dssp             TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred             CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence             11  133332 45567888999999999999975 9999999999999998776544332                   


Q ss_pred             -------------------------------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cc
Q 012367          347 -------------------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WA  388 (465)
Q Consensus       347 -------------------------------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~  388 (465)
                                                           .|...|.+++|+| +++++++|+.|+.|++||+.++..+. +.
T Consensus       801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  879 (1249)
T 3sfz_A          801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCR  879 (1249)
T ss_dssp             BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecC
Confidence                                                 3667899999999 99999999999999999999887665 77


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      +|...|++++|+|+|+.|++++.||.|++|++.+
T Consensus       880 ~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            8999999999999999999999999999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=1.1e-21  Score=198.31  Aligned_cols=169  Identities=26%  Similarity=0.491  Sum_probs=146.2

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ....+.+|...|.++.|+|+|++|++++.|+.|+||++.++...                                    
T Consensus       222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~------------------------------------  265 (420)
T 4gga_A          222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------------------------------  265 (420)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC------------------------------------
T ss_pred             eeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc------------------------------------
Confidence            34567899999999999999999999999999999998764321                                    


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC--EEEE--EeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLS--CSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s--~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                           ...+.....|.+.|.+++|+|.+  .+++  |+.|++|++||+.++.++..+.+...|.++.|+| +++.+++++
T Consensus       266 -----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~s  339 (420)
T 4gga_A          266 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGH  339 (420)
T ss_dssp             -----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEE
T ss_pred             -----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC-CCCeEEEEE
Confidence                 12355667899999999999853  5554  4579999999999999999999889999999999 888887765


Q ss_pred             --CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          370 --IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       370 --~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                        .|+.|+|||+.+++.+. +.+|...|++++|+|||++|++|+.||+|+|||+.+..
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence              68999999999887665 78899999999999999999999999999999997643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7e-22  Score=203.04  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=139.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      +|...|++++|||+|++||+++.||+|+|||..+                                              
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------------------------------------------  116 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------------------------------------------  116 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------------------------------------------
Confidence            5688999999999999999999999999999643                                              


Q ss_pred             Ccceeeecccc-----ceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe-------EeEEe-----cCCCceEEEEEccCC
Q 012367          300 SPLQELHGHKG-----DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-----DHHNYVTCVQFNPID  361 (465)
Q Consensus       300 ~~~~~~~gh~~-----~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~-------~l~~~-----~h~~~V~~i~fsp~~  361 (465)
                       .+..+. |..     .|.+++|+|++ +|++|+.||+|+|||+.++.       .+..+     +|.+.|.+++|+| +
T Consensus       117 -~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-d  193 (588)
T 2j04_A          117 -MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-D  193 (588)
T ss_dssp             -EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-T
T ss_pred             -eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-C
Confidence             122233 433     59999999986 99999999999999999875       35664     3677999999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEE----ec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVV----DW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~----~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~  436 (465)
                      +  +++++.|++|++||+.++...    .+ .+|...|.+++|+  |+.|++++ +|+|++||+.+++......      
T Consensus       194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~------  262 (588)
T 2j04_A          194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT------  262 (588)
T ss_dssp             E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC------
T ss_pred             c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc------
Confidence            7  888899999999999887642    24 3688899999999  68899887 6999999999887643322      


Q ss_pred             cccCCceeeEEE--eecC
Q 012367          437 KTSGNKITGIQG--RISK  452 (465)
Q Consensus       437 ~~~~~~It~~~f--~p~g  452 (465)
                       .+...+.++.|  +|++
T Consensus       263 -gh~~~V~~va~~~s~d~  279 (588)
T 2j04_A          263 -GSLENFHIIPLNHEKES  279 (588)
T ss_dssp             -SCCSCCCEEEETTCSSC
T ss_pred             -CCCceEEEEEeeeCCCC
Confidence             14467888888  7775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=8.6e-22  Score=215.04  Aligned_cols=199  Identities=20%  Similarity=0.322  Sum_probs=165.6

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+.+.+|.++|++++|+|+|++||+|+.||.|+|||+.++                                      
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--------------------------------------   87 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--------------------------------------   87 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--------------------------------------
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--------------------------------------
Confidence            345677899999999999999999999999999999999864                                      


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                             ..+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.++ .+...+ .|...|.+++|+|.++++|++++
T Consensus        88 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           88 -------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             -------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             -------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence                   2355677899999999999986 8999999999999999887 666666 58899999999997788999999


Q ss_pred             CCCcEEEEeCCCCeEEe-cc-cCCCCeEEEEEee--CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          370 IDGKVRIWGVCEKRVVD-WA-DVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-~~-~~~~~V~sv~~sp--dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      .||.|++||+.++.... .. .+...|.+++|+|  ++.+|++|+.||.|++||+.+++.. ..+..      +...|+.
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~------~~~~v~~  233 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-ATLEG------HMSNVSF  233 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-EEEEC------CSSCEEE
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-EEEcC------CCCCEEE
Confidence            99999999998765443 33 3448899999999  9999999999999999999887642 23322      3467999


Q ss_pred             EEEeecCCc------c-ceeeeecC
Q 012367          446 IQGRISKNY------D-NFRRFQTP  463 (465)
Q Consensus       446 ~~f~p~gs~------d-~~~~~~~p  463 (465)
                      +.|+|++.+      | .+++|+..
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECC
Confidence            999998743      3 47777653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.9e-21  Score=189.80  Aligned_cols=160  Identities=11%  Similarity=0.062  Sum_probs=129.7

Q ss_pred             cCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          220 AHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       220 ~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +|.++|.+++|+|  ++++|++|+.||+|++||+.++..                                         
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------------------------------------  161 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----------------------------------------  161 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----------------------------------------
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----------------------------------------
Confidence            6779999999999  999999999999999999987533                                         


Q ss_pred             cCCcceee-eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEe-EEe-c-CCCceEEEEEccCCCCEEEEEeCCC
Q 012367          298 EESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-NVF-D-HHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       298 ~~~~~~~~-~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l-~~~-~-h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                          +... ..|...|.+++|+|++ +|++|+.|++|++||+++++.+ ..+ . |...|++++|+| ++.+|++++ |+
T Consensus       162 ----~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~  235 (343)
T 3lrv_A          162 ----YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQ  235 (343)
T ss_dssp             ----EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SS
T ss_pred             ----EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CC
Confidence                1112 2355679999999986 8889999999999999999887 666 3 889999999999 999999999 55


Q ss_pred             cEEEEeCCCCeEEe-ccc---CCCCe--EEEEEeeCCCEEEEEEc-CCcEEEEEecCCcee
Q 012367          373 KVRIWGVCEKRVVD-WAD---VRDVI--SAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK  426 (465)
Q Consensus       373 ~I~iwd~~~~~~~~-~~~---~~~~V--~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~  426 (465)
                      .|++||++++..+. +..   +...+  .+++|+|+|++|++++. |+.+++|++......
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~  296 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN  296 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence            99999999876543 221   33334  36999999999999999 999999999765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=1.3e-20  Score=191.79  Aligned_cols=234  Identities=18%  Similarity=0.325  Sum_probs=172.2

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ....+.+.+|.+.|++++|+  +.+|++|+.||+|++||+.++............+......+...+........     
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i-----  221 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL-----  221 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE-----
T ss_pred             CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEE-----
Confidence            34556788999999999997  56999999999999999998876655543333222211111111111111111     


Q ss_pred             Cceeeec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEe
Q 012367          292 DEVFQIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       292 ~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                       .+|++. .+.+..+.+|...|.+++| .++++++++.|++|++||+.+++++..+. |...|.+++|   ++.++++|+
T Consensus       222 -~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~  296 (445)
T 2ovr_B          222 -RVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGS  296 (445)
T ss_dssp             -EEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEE
T ss_pred             -EEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEe
Confidence             123332 4567788899999999999 45689999999999999999999999885 8889999999   678999999


Q ss_pred             CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      .|+.|++||+.+++.+. +.+|...+.++.+  +++.+++|+.||.|++||+.+++... .+..+   ..+...|++++|
T Consensus       297 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~---~~~~~~v~~~~~  370 (445)
T 2ovr_B          297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ-TLQGP---NKHQSAVTCLQF  370 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE-EECST---TSCSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEE-EEccC---CCCCCCEEEEEE
Confidence            99999999999887665 6778888888776  56799999999999999998775532 22221   124467888887


Q ss_pred             eec----CCcc-ceeeeecC
Q 012367          449 RIS----KNYD-NFRRFQTP  463 (465)
Q Consensus       449 ~p~----gs~d-~~~~~~~p  463 (465)
                      .+.    ++.| .+++|+..
T Consensus       371 ~~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          371 NKNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             CSSEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECC
Confidence            543    4444 47777653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-21  Score=201.73  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=149.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec-
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  298 (465)
                      .-...|.+|+|||||+++||||.|++|+  |.......      .++   ......+.+.+.+        ..+.+.+. 
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l------~gh---~~~v~~V~FsPdg--------~~~~~~~~~   73 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI------NCN---SKNLFHVKEFPLE--------FENKLDFEL   73 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC------SSB---GGGTEEEEEECCC--------CCCTTTTSC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee------cCC---CccEEEEEECCCC--------CcceEEEEe
Confidence            3457899999999999999999999999  65443221      010   1111112222111        11122221 


Q ss_pred             CCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCC-----ceEEEEEccCCCCEEEEEeCC
Q 012367          299 ESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       299 ~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~-----~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      ......+. +|...|.+++|+|+| .|++++.||+|++||...  ++..+.|..     .|.+++|+| ++++|++|+.|
T Consensus        74 ~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~D  150 (588)
T 2j04_A           74 AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNED  150 (588)
T ss_dssp             CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEETT
T ss_pred             CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEcCC
Confidence            11111222 568899999999986 799999999999999654  667666544     499999999 99999999999


Q ss_pred             CcEEEEeCCCCeE--------Eec----ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee--eEeeecCccc
Q 012367          372 GKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--EKVDFHDRKK  437 (465)
Q Consensus       372 g~I~iwd~~~~~~--------~~~----~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~--~~~~~~~~~~  437 (465)
                      |+|+|||+.++.+        ..+    .+|..+|.+++|+|||  +++++.|++|++||+.++....  ..+.. +   
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~---  224 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-A---  224 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-C---
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-c---
Confidence            9999999998742        233    6688899999999999  8899999999999999877531  22210 1   


Q ss_pred             ccCCceeeEEEe----ecCCccceeeeec
Q 012367          438 TSGNKITGIQGR----ISKNYDNFRRFQT  462 (465)
Q Consensus       438 ~~~~~It~~~f~----p~gs~d~~~~~~~  462 (465)
                       +...|.+++|+    ..+.+.++++|+.
T Consensus       225 -h~~~V~svaFsg~~LASa~~~tIkLWd~  252 (588)
T 2j04_A          225 -SRRKITDLKIVDYKVVLTCPGYVHKIDL  252 (588)
T ss_dssp             -CSSCCCCEEEETTEEEEECSSEEEEEET
T ss_pred             -ccCcEEEEEEECCEEEEEeCCeEEEEEC
Confidence             22567777776    2233456788874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=3.9e-21  Score=185.24  Aligned_cols=168  Identities=25%  Similarity=0.464  Sum_probs=143.3

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ....+.+|...+.++.|++++++|++++.||+|+|||+.++...                                    
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------------------------  185 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------------------------------  185 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB------------------------------------
T ss_pred             eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc------------------------------------
Confidence            34567899999999999999999999999999999999864321                                    


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCC----EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~----~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                           .........|.+.|.+++++|.+    .+++++.+++|++||...........+...+.++.|+| ++..+++++
T Consensus       186 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s  259 (318)
T 4ggc_A          186 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGH  259 (318)
T ss_dssp             -----SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEE
T ss_pred             -----ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEE
Confidence                 12234455688899999999853    34567789999999999999998889999999999999 777777654


Q ss_pred             --CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          370 --IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       370 --~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                        .|+.|+|||+.+++.+. +.+|.+.|++++|+|+|++|++|+.||+|+|||+.+.
T Consensus       260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence              79999999999887765 7889999999999999999999999999999998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=3.4e-22  Score=200.72  Aligned_cols=167  Identities=19%  Similarity=0.245  Sum_probs=125.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .+|.+.+....+++++.+||+|+.|++|+|||+.+......                                       
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~---------------------------------------  126 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ---------------------------------------  126 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------------------------------------
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------------------------------------
Confidence            46777777788888899999999999999999987543221                                       


Q ss_pred             CCcceeeeccccceEEEEecC--------C-CEEEEEeCCCeEEEEeCCCCeEeE-EecCCCceEEEEEccCCCCEEEEE
Q 012367          299 ESPLQELHGHKGDVLDLAWSN--------S-NYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~--------~-~~l~s~s~DgtV~lWD~~~~~~l~-~~~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                       .++..+.||.+.|.+++|+|        + .+|+|||.|++|+|||+.++.++. .+.|...|.+++|+|.+.++|++|
T Consensus       127 -~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  205 (393)
T 4gq1_A          127 -HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG  205 (393)
T ss_dssp             -EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             -eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence             22445679999999999986        3 389999999999999998776554 457999999999999445689999


Q ss_pred             eCCCcEEEEeCCCCeEEe--------------------------cccCCCCeEEEEEe-eCCCEEEEEEcCCcEEEEEec
Q 012367          369 SIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~--------------------------~~~~~~~V~sv~~s-pdg~~l~sgs~dG~v~iwd~~  421 (465)
                      +.|++|++||+++++...                          ..+|...|.++.|. |+|+.|++++.|+++++||+.
T Consensus       206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence            999999999998764321                          23577789999987 799999999999999999998


Q ss_pred             CCce
Q 012367          422 GNDL  425 (465)
Q Consensus       422 ~~~~  425 (465)
                      .++.
T Consensus       286 ~~~~  289 (393)
T 4gq1_A          286 ANND  289 (393)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            6654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=1.5e-20  Score=191.27  Aligned_cols=224  Identities=18%  Similarity=0.360  Sum_probs=167.7

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      ...+.+.+|.+.|.+++|+  +.+|++|+.||+|++||+.++............+......+.        ........+
T Consensus       190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--------~l~~~~~dg  259 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--------RVVSGAYDF  259 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS--------CEEEEETTS
T ss_pred             cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCC--------EEEEEcCCC
Confidence            3456678999999999995  568999999999999999987766555443332222111111        111111112


Q ss_pred             c--eeee-cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367          293 E--VFQI-EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~--~~~~-~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                      .  +|++ ...++..+.+|...|.+++| .+.++++++.|++|++||+.+++++..+ .|...+.++.+   +++++++|
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~  335 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNILVSG  335 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE---ETTEEEEE
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE---eCCEEEEE
Confidence            1  2333 24567788899999999999 4568999999999999999999999888 58888998887   45799999


Q ss_pred             eCCCcEEEEeCCCCeEEe-ccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367          369 SIDGKVRIWGVCEKRVVD-WAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~-~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It  444 (465)
                      +.||.|++||+.+++.+. +..   |...|++++|+  +++|++|+.||.|++||+.+++.........  ...+...|+
T Consensus       336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~v~  411 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE--SGGSGGVVW  411 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT--TGGGTCEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc--cCCCCceEE
Confidence            999999999999887665 333   88899999995  6799999999999999999887643322221  123557899


Q ss_pred             eEEEeecCCc
Q 012367          445 GIQGRISKNY  454 (465)
Q Consensus       445 ~~~f~p~gs~  454 (465)
                      +++|+|++.+
T Consensus       412 ~~~~s~~~~~  421 (445)
T 2ovr_B          412 RIRASNTKLV  421 (445)
T ss_dssp             EEEECSSEEE
T ss_pred             EEEecCCEEE
Confidence            9999988543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.87  E-value=3.6e-21  Score=187.67  Aligned_cols=221  Identities=12%  Similarity=0.081  Sum_probs=156.2

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEec-CCceeeeeeec--CCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV-TSVAASCKSFT--DDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ..+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+..... ...  ....+      ..+.+.. ..........
T Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v------~~l~~~~-~~~l~s~~~d  121 (342)
T 1yfq_A           50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA-LTNNEANLGI------CRICKYG-DDKLIAASWD  121 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE-CBSCCCCSCE------EEEEEET-TTEEEEEETT
T ss_pred             eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEe-ccccCCCCce------EEEEeCC-CCEEEEEcCC
Confidence            34458999999999999999 9999999999999999 7764421 111  11111      1111211 1111111111


Q ss_pred             Cc--eeeec----------CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCC-CeEe---EEecCCCceEEE
Q 012367          292 DE--VFQIE----------ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCL---NVFDHHNYVTCV  355 (465)
Q Consensus       292 ~~--~~~~~----------~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~-~~~l---~~~~h~~~V~~i  355 (465)
                      ..  +|++.          .+++..+. |...|.+++|+|++ +++++.|+.|++||+.+ +...   ....|...|.++
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             CeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence            11  22222          33455555 88999999999987 99999999999999988 5432   333588899999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCC------eE-EecccCCC---------CeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEK------RV-VDWADVRD---------VISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~------~~-~~~~~~~~---------~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      +|+|.+++++++|+.||.|++|++...      .. ..+..|..         .|++++|+|++++|++|+.||.|++||
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            999855789999999999999999765      32 33555544         999999999999999999999999999


Q ss_pred             ecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          420 ASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +.+++... .+..+     +...|+++.  |++.+
T Consensus       280 ~~~~~~~~-~~~~~-----h~~~v~~~~--~~~~~  306 (342)
T 1yfq_A          280 LQTRKKIK-NFAKF-----NEDSVVKIA--CSDNI  306 (342)
T ss_dssp             TTTTEEEE-ECCCC-----SSSEEEEEE--ECSSE
T ss_pred             CccHhHhh-hhhcc-----cCCCceEec--CCCCe
Confidence            99876532 23222     145777777  66543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=2.3e-20  Score=196.59  Aligned_cols=147  Identities=13%  Similarity=0.235  Sum_probs=115.7

Q ss_pred             cccceEEEEecCCCEEEEEeC-CCeEEEEeCCCCeEe-EEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          308 HKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       308 h~~~V~~l~~s~~~~l~s~s~-DgtV~lWD~~~~~~l-~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                      |...+.+++|+ +.+|++++. |+.|++||+.++... ..+ .|...|++++|+| ++++|++|+.|+.|++||+.+++.
T Consensus       445 ~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~  522 (615)
T 1pgu_A          445 LNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREV  522 (615)
T ss_dssp             CSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcc
Confidence            44556666666 556777777 777888887776554 333 4888999999999 999999999999999999999887


Q ss_pred             Ee-ccc-CCCCeEEEEEee----------CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          385 VD-WAD-VRDVISAICYIP----------DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       385 ~~-~~~-~~~~V~sv~~sp----------dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +. +.+ |...|++++|+|          ++++|++|+.||.|++||+.++......+..      +...|+++.|+|++
T Consensus       523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------h~~~v~~l~~s~~~  596 (615)
T 1pgu_A          523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA------HKDGVNNLLWETPS  596 (615)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS------STTCEEEEEEEETT
T ss_pred             eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc------CccceEEEEEcCCC
Confidence            76 455 999999999999          9999999999999999999987433333322      34789999999986


Q ss_pred             C-----cc-ceeeeec
Q 012367          453 N-----YD-NFRRFQT  462 (465)
Q Consensus       453 s-----~d-~~~~~~~  462 (465)
                      .     .| .+++|++
T Consensus       597 ~l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          597 TLVSSGADACIKRWNV  612 (615)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             CeEEecCCceEEEEee
Confidence            3     23 3677764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=4.1e-20  Score=187.66  Aligned_cols=223  Identities=20%  Similarity=0.366  Sum_probs=164.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee-
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI-  297 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  297 (465)
                      .+|...|+|++|  ++++|++|+.||+|++||+.++............+......+...+.......+.      +|++ 
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~------vwd~~  201 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR------VWDVN  201 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE------EEESS
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEE------EEECC
Confidence            467788999988  7889999999999999999987766555443333322222222222222222222      2333 


Q ss_pred             cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe---EEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l---~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      ..+.+..+.+|...|.+++|++ +++++|+.|++|++||+.++..+   ..+ .|...|.+++|   +++++++|+.||.
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~  277 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT  277 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSE
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCe
Confidence            2456778889999999999975 58999999999999999987755   333 58899999999   5789999999999


Q ss_pred             EEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee--
Q 012367          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI--  450 (465)
Q Consensus       374 I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p--  450 (465)
                      |++||+.+++.+. +.+|...|.+++|  +++.+++|+.||.|++||+.+++... .+..      +...|+++.|.+  
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~------h~~~v~~~~~~~~~  348 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR-VLEG------HEELVRCIRFDNKR  348 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE-EECC------CSSCEEEEECCSSE
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE-EEeC------CcCcEEEEEecCCE
Confidence            9999999887765 6779999999998  47799999999999999999875532 3322      335677776632  


Q ss_pred             --cCCcc-ceeeeec
Q 012367          451 --SKNYD-NFRRFQT  462 (465)
Q Consensus       451 --~gs~d-~~~~~~~  462 (465)
                        .++.| .+++|+.
T Consensus       349 l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          349 IVSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEEEETTSCEEEEEH
T ss_pred             EEEEeCCCcEEEEEC
Confidence              23444 4677764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=1e-20  Score=183.33  Aligned_cols=207  Identities=12%  Similarity=0.019  Sum_probs=142.9

Q ss_pred             CCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          221 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       221 H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      |.+.|++|+|+|+    ++++++++.+  +++|++.+++........        ....+.                ++.
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g--------~d~~V~----------------~~~  163 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL--------SDQQVE----------------VMT  163 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSS--------TTCEEE----------------EEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccC--------CCCcEE----------------EEE
Confidence            5668999999999    9999999854  888998765544332110        011111                122


Q ss_pred             e--cCCcceeeeccccceEEEEecC---C-CEEEEEeCCCeEEEEeCCCCeEeEEec-CC---CceEEEEEccCCCCEE-
Q 012367          297 I--EESPLQELHGHKGDVLDLAWSN---S-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HH---NYVTCVQFNPIDDNYF-  365 (465)
Q Consensus       297 ~--~~~~~~~~~gh~~~V~~l~~s~---~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~---~~V~~i~fsp~~~~~l-  365 (465)
                      +  .++.+..+.+|...+..++|++   + ..|++++.|++|+|||+.++++++++. |+   ..|.+++|+| ++.++ 
T Consensus       164 ~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lv  242 (356)
T 2w18_A          164 FAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFI  242 (356)
T ss_dssp             ECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEE
T ss_pred             ECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEE
Confidence            2  1244566778999999999987   3 399999999999999999999999995 43   3678889999 88876 


Q ss_pred             -----------EEEeCCCcEEEEeCCCCeEEec------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          366 -----------ISGSIDGKVRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       366 -----------~sgs~Dg~I~iwd~~~~~~~~~------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                                 ++|+.|++|++||..+++.+..      .+|...+.+.  +.++..+++|+.||+|+|||+.+++... 
T Consensus       243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~-  319 (356)
T 2w18_A          243 VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTA-  319 (356)
T ss_dssp             EEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEE-
T ss_pred             EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEE-
Confidence                       6788999999999999987642      2555554444  4448899999999999999999887532 


Q ss_pred             EeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          429 KVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       429 ~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      .+..|.     ...+..+.|+|+|.+      | ++++|+.
T Consensus       320 tL~gH~-----~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          320 LLPPVS-----DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EECCC-------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EecCCC-----CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            332221     123446899998654      4 4788764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.86  E-value=5.9e-21  Score=187.25  Aligned_cols=199  Identities=16%  Similarity=0.164  Sum_probs=135.0

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCC-ceeEecCC-
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSS-HVPVVIPD-  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~-  292 (465)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.+......... ...+      ..+.+. ..... ........ 
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v------~~~~~~~~~~~~~l~~~~~dg~  152 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH-DAPV------KTIHWIKAPNYSCVMTGSWDKT  152 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCE------EEEEEEECSSCEEEEEEETTSE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc-cCce------EEEEEEeCCCCCEEEEccCCCc
Confidence            55678999999999999999999999999999999998765543221 1111      111110 01111 11111111 


Q ss_pred             -ceeeecCCcceeeeccccceEEEEecC------------------------------------------C-----CEEE
Q 012367          293 -EVFQIEESPLQELHGHKGDVLDLAWSN------------------------------------------S-----NYLL  324 (465)
Q Consensus       293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~------------------------------------------~-----~~l~  324 (465)
                       .+|++..........+...+.++.+.+                                          +     ..++
T Consensus       153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             EEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence             123333333333333444433332211                                          0     1277


Q ss_pred             EEeCCCeEEEEeCCCC---eEeEEec-CCC------------ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c
Q 012367          325 SCSMDKTVRMWQVGCN---QCLNVFD-HHN------------YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W  387 (465)
Q Consensus       325 s~s~DgtV~lWD~~~~---~~l~~~~-h~~------------~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~  387 (465)
                      +++.|+.|++||+...   ..+..+. |..            .|++++|+| ++++|++|+.||.|++||+.+++.+. +
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            8888888888888776   4445553 333            699999999 99999999999999999999987765 6


Q ss_pred             ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       388 ~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ..|...|++++|+|+|++|++|+.|+..+.|++-.
T Consensus       312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          312 EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             cCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            78899999999999999999999998766666543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.7e-20  Score=188.91  Aligned_cols=231  Identities=12%  Similarity=0.015  Sum_probs=154.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce---eeeeeecCCCCcccccC----CCeEEeccCCC---C-ceeEe-
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSNAK----EGKIKFGKKKS---S-HVPVV-  289 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~-~~~~~-  289 (465)
                      ..+|.+++|+|+|++|+++ .++.|++||+.++.   .................    ...........   . ..... 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4578999999999977666 47899999998877   44333322110000000    00000000000   0 00000 


Q ss_pred             -cCCceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCC--CCeEeEEe---cCCCceEEEEEccCC
Q 012367          290 -IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPID  361 (465)
Q Consensus       290 -~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~--~~~~l~~~---~h~~~V~~i~fsp~~  361 (465)
                       ....... ...+.....+|.+.|.+++|+|++ +| ++++.|++|++||+.  ++.++..+   .|...|++++|+| +
T Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~  160 (450)
T 2vdu_B           83 SIKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-D  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-T
T ss_pred             cccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-C
Confidence             0000000 011223345788899999999986 54 899999999999999  88888777   4778999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEE-----ecccCCCCeEEEEEeeC---CCEEEEEEcCCcEEEEEecCCceeeeEeeec
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFH  433 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~-----~~~~~~~~V~sv~~spd---g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~  433 (465)
                      +++|++|+.|+.|++|++.++...     .+.+|...|++++|+|+   +++|++|+.||.|++||+.+++........ 
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-  239 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG-  239 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC-
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC-
Confidence            999999999999999999876644     46779999999999999   999999999999999999887653322211 


Q ss_pred             CcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367          434 DRKKTSGNKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       434 ~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                           +...|+++.|+ ++.+      | .+++|+.
T Consensus       240 -----h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~  269 (450)
T 2vdu_B          240 -----HKHFVSSICCG-KDYLLLSAGGDDKIFAWDW  269 (450)
T ss_dssp             -----CSSCEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred             -----CCCceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence                 34678999988 6543      3 4677764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=6.5e-20  Score=181.48  Aligned_cols=200  Identities=13%  Similarity=0.125  Sum_probs=142.1

Q ss_pred             CcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcc--------cccCCCeEEeccCCCC---------
Q 012367          223 GCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFG--------SNAKEGKIKFGKKKSS---------  284 (465)
Q Consensus       223 ~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---------  284 (465)
                      ..+..+++.++++++ ++|+.|++|+|||+.++..............        .......+.++.....         
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence            358889999988877 5678889999999988776654432221100        0011112222211111         


Q ss_pred             ----------ceeEe--c-CC--ceeeecCC----------------c-ceeeeccccceEEEEecCCC-EEEEEeCCCe
Q 012367          285 ----------HVPVV--I-PD--EVFQIEES----------------P-LQELHGHKGDVLDLAWSNSN-YLLSCSMDKT  331 (465)
Q Consensus       285 ----------~~~~~--~-~~--~~~~~~~~----------------~-~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt  331 (465)
                                ...+.  . .+  .+|++...                + +..+.+|.+.|.+++|+|++ +|++|+.|++
T Consensus       139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence                      00110  1 11  13343321                2 78899999999999999986 8999999998


Q ss_pred             -EEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe---c-----------------
Q 012367          332 -VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---W-----------------  387 (465)
Q Consensus       332 -V~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~---~-----------------  387 (465)
                       |++||+.+++++..+.   |...|++++|+| ++++|++|+.|++|+|||+.......   +                 
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence             9999999999999996   889999999999 99999999999999999997643111   0                 


Q ss_pred             ----ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          388 ----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       388 ----~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                          .........++|+|+|+.|++++.||.+++|++..+
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                011223477999999999999999999999998753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=1.4e-18  Score=172.92  Aligned_cols=230  Identities=14%  Similarity=0.138  Sum_probs=164.0

Q ss_pred             hhhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC-C
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP-D  292 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  292 (465)
                      .+.+.+|. .+.+++|+|+|++| ++++.|++|++||+.+++...........       ..+.+...+......... .
T Consensus        25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v-------~~~~~spdg~~l~~~~~~~~   96 (391)
T 1l0q_A           25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-------QGVAVSPDGKQVYVTNMASS   96 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-------EEEEECTTSSEEEEEETTTT
T ss_pred             EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCc-------cceEECCCCCEEEEEECCCC
Confidence            34555665 48999999999976 67779999999999988776554433211       111111111111111111 1


Q ss_pred             c--eeeecC-CcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE-E
Q 012367          293 E--VFQIEE-SPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-I  366 (465)
Q Consensus       293 ~--~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l-~  366 (465)
                      .  +|++.. +.+..+. +...+.+++|+|++ .| ++++.|+.|++||+.+++++..+.+...+.+++|+| +++++ +
T Consensus        97 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~  174 (391)
T 1l0q_A           97 TLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYV  174 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEE
T ss_pred             EEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEE
Confidence            1  223322 2333444 44578999999986 45 788889999999999999999998778889999999 88776 6


Q ss_pred             EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE---cCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367          367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs---~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I  443 (465)
                      +++.++.|++||+.+++......+...+.+++|+|+|+.|++++   .++.|++||+.+++.. ..+..+       ..+
T Consensus       175 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-------~~~  246 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVG-------PDP  246 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECC-------SSE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecC-------CCc
Confidence            77889999999999998888777788999999999999999988   6899999999887542 233222       246


Q ss_pred             eeEEEeecCCc-------c-ceeeeec
Q 012367          444 TGIQGRISKNY-------D-NFRRFQT  462 (465)
Q Consensus       444 t~~~f~p~gs~-------d-~~~~~~~  462 (465)
                      .++.|+|++.+       | .+++|+.
T Consensus       247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          247 AGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            78888887643       2 3666664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.82  E-value=6.7e-19  Score=177.70  Aligned_cols=183  Identities=9%  Similarity=0.057  Sum_probs=153.8

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+.+|.+.|++++|+|+++++++++.|+.|++||+.+..                                         
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~-----------------------------------------  202 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA-----------------------------------------  202 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-----------------------------------------
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce-----------------------------------------
Confidence            567999999999999999999999999999999997642                                         


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe-----
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-----  369 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-----  369 (465)
                          .+..+..|...+.+++|+|++ .+ ++++.|++|++||+.+++.+..+.+...+.+++|+| +++++++++     
T Consensus       203 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~  277 (433)
T 3bws_A          203 ----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN  277 (433)
T ss_dssp             ----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred             ----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence                344555788899999999975 45 566689999999999999999998888899999999 999998888     


Q ss_pred             ---CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          370 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       370 ---~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                         .|+.|++||+.+++.+....+...+.+++|+|+++.+ ++++.+|.|++||+.+++... .+.       ....+.+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~-~~~-------~~~~~~~  349 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK-SIP-------VFDKPNT  349 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSSEEE
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE-Eec-------CCCCCCe
Confidence               4889999999999888877777789999999999755 566889999999999776532 222       2346788


Q ss_pred             EEEeecCC
Q 012367          446 IQGRISKN  453 (465)
Q Consensus       446 ~~f~p~gs  453 (465)
                      +.|+|+|.
T Consensus       350 ~~~s~dg~  357 (433)
T 3bws_A          350 IALSPDGK  357 (433)
T ss_dssp             EEECTTSS
T ss_pred             EEEcCCCC
Confidence            89988875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=7.1e-19  Score=179.00  Aligned_cols=169  Identities=18%  Similarity=0.145  Sum_probs=129.1

Q ss_pred             cCCCcEEEEEECCCCCEEE----EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          220 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~La----Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .|.+.|++++|+|+|++||    +|+.|++|+|||+.+......     ..                         ..  
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-----~~-------------------------~~--  137 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-----QQ-------------------------KR--  137 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-----SS-------------------------CC--
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc-----CC-------------------------cc--
Confidence            5788999999999999999    889999999999875310000     00                         00  


Q ss_pred             eecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                        ....+..+.+|...|.+++|+|+  .+|++++.||+|++||++++..+... .|...|++++|+| ++++|++|+.||
T Consensus       138 --~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg  214 (434)
T 2oit_A          138 --PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG  214 (434)
T ss_dssp             --CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred             --eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence              00113455689999999999996  48999999999999999998765444 5888999999999 899999999999


Q ss_pred             cEEEEeCCCCeEEeccc-------CCCCeEEEEEeeCCCEEEEEE-cCCc------EEEEEecCC
Q 012367          373 KVRIWGVCEKRVVDWAD-------VRDVISAICYIPDGKGFIVGS-ITGT------CHFYKASGN  423 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~-------~~~~V~sv~~spdg~~l~sgs-~dG~------v~iwd~~~~  423 (465)
                      +|++||++......+..       |...|.+++|++++.++++.+ .+|.      +++|++...
T Consensus       215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99999998333322222       233799999999987775533 4433      899999865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=4.1e-19  Score=180.76  Aligned_cols=201  Identities=18%  Similarity=0.179  Sum_probs=141.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +...++.+++++++.++++|+.|+ |+||+.......   .....      ......                    ...
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~------~~~~~~--------------------~~~   84 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGD------DPNKIV--------------------DKV   84 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTC------CTTCEE--------------------ECC
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---ccccc------Cccccc--------------------ccC
Confidence            344689999999999999999998 999886532110   00000      000000                    001


Q ss_pred             cceeeeccccceEEEEecCCC-EEE----EEeCCCeEEEEeCCCC--------eE---eEEe-cCCCceEEEEEccCCCC
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~----s~s~DgtV~lWD~~~~--------~~---l~~~-~h~~~V~~i~fsp~~~~  363 (465)
                      +... ..|...|.+++|+|++ +|+    +++.|++|+|||+.++        +.   +..+ .|...|++++|+|.+++
T Consensus        85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  163 (434)
T 2oit_A           85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS  163 (434)
T ss_dssp             CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred             cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence            1111 2467789999999975 677    7888999999998654        22   2333 37889999999994489


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc-ccCC
Q 012367          364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGN  441 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~-~~~~  441 (465)
                      +|++++.||+|++||++++... ...+|...|++++|+|+|++|++|+.||+|++||++ ++.. ..+..+.... .+..
T Consensus       164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~-~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK-KVIPCPPFYESDHPV  241 (434)
T ss_dssp             EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE-EEECCCTTCCTTSCE
T ss_pred             EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc-ccccCCcccCCCCce
Confidence            9999999999999999987654 356688899999999999999999999999999998 3222 2232222111 1234


Q ss_pred             ceeeEEEeecCCc
Q 012367          442 KITGIQGRISKNY  454 (465)
Q Consensus       442 ~It~~~f~p~gs~  454 (465)
                      .+.++.|++++.+
T Consensus       242 ~v~~v~w~~~~~~  254 (434)
T 2oit_A          242 RVLDVLWIGTYVF  254 (434)
T ss_dssp             EEEEEEEEETTEE
T ss_pred             eEEEEEEecCceE
Confidence            7888888876544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=2.4e-17  Score=166.67  Aligned_cols=223  Identities=11%  Similarity=0.059  Sum_probs=161.1

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDG---VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .+.+.+|.+.|.+++|+|+|++||+++.|+   .|++||+.++...... ......      ....+...+.........
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~~~------~~~~~spdg~~la~~~~~  243 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHN------GAPAFSPDGSKLAFALSK  243 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSSCE------EEEEECTTSSEEEEEECT
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCCcc------cCEEEcCCCCEEEEEEec
Confidence            456778999999999999999999999886   9999999987654322 111111      111121111111111111


Q ss_pred             ---Cce--eeecCCcceeeeccccceEEEEecCCC-EEEEEeC-CC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCC
Q 012367          292 ---DEV--FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD  362 (465)
Q Consensus       292 ---~~~--~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~  362 (465)
                         ..+  +++.......+..|...+.+++|+|++ +|++++. ++  .|.+||+.+++......+...+.+++|+| ++
T Consensus       244 ~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG  322 (415)
T 2hqs_A          244 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DG  322 (415)
T ss_dssp             TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TS
T ss_pred             CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CC
Confidence               112  333444556778899999999999986 6777765 44  68888998887654445778899999999 99


Q ss_pred             CEEEEEeCC---CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCceeeeEeeecCcc
Q 012367          363 NYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRK  436 (465)
Q Consensus       363 ~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~~~~~~~~~~~~  436 (465)
                      ++|++++.+   ..|++||+.+++...+..+. .+.+++|+|||+.|++++.++   .|++||+.++...  .+..    
T Consensus       323 ~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~--~l~~----  395 (415)
T 2hqs_A          323 KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA--RLPA----  395 (415)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE--ECCC----
T ss_pred             CEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE--EeeC----
Confidence            999988865   58999999998887766665 899999999999999998877   7999999866442  2222    


Q ss_pred             cccCCceeeEEEeecCCc
Q 012367          437 KTSGNKITGIQGRISKNY  454 (465)
Q Consensus       437 ~~~~~~It~~~f~p~gs~  454 (465)
                        +...|.+++|+|--.|
T Consensus       396 --~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          396 --TDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             --SSSEEEEEEECCCCCC
T ss_pred             --CCCCCcCCcccccccc
Confidence              3368999999997665

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.79  E-value=2.1e-17  Score=166.67  Aligned_cols=202  Identities=10%  Similarity=0.136  Sum_probs=148.6

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-  290 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  290 (465)
                      .....+..|...+.+++|+|++++++ +++.|+.|++||+.++...........       ...+.+...+........ 
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL-------PRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE-------EEEEEECTTSSEEEEEEEE
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC-------ceEEEEcCCCCEEEEEECC
Confidence            34455668999999999999999885 555899999999988765443322111       011111111111111110 


Q ss_pred             -------CC--ceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEcc
Q 012367          291 -------PD--EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP  359 (465)
Q Consensus       291 -------~~--~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp  359 (465)
                             .+  .+|++..........|...+.+++|+|++  ++++++.|+.|++||+.+++.+..+.+...+.+++|+|
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~  354 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP  354 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC
Confidence                   00  13443333333444677789999999986  55677999999999999999999999889999999999


Q ss_pred             CCCCEEEEEeC---------------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC
Q 012367          360 IDDNYFISGSI---------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG  422 (465)
Q Consensus       360 ~~~~~l~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~  422 (465)
                       +++++++++.               ||.|++||+.+++.+........+.+++|+|+|++|++++. ||.|++|++.+
T Consensus       355 -dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          355 -DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence             9998888876               57999999999988876666778999999999999998875 99999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=1.1e-16  Score=159.06  Aligned_cols=202  Identities=13%  Similarity=0.147  Sum_probs=144.6

Q ss_pred             hhhccCCCcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCC-eEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEG-KIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|. .|.+++|+|+|++|+ +++.|+.|++||+.++............... ....+ .+.+.........     
T Consensus        68 ~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~-----  141 (391)
T 1l0q_A           68 ATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS-----  141 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE-----
T ss_pred             EEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEE-----
Confidence            4444444 899999999999875 4556799999999987765544432211100 00111 1111111111111     


Q ss_pred             ceeeec-CCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          293 EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       293 ~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                       +|++. .+.+..+..| ..+.+++|+|++ +| ++++.|++|++||+.+++++..+.+...+.+++|+| +++++++++
T Consensus       142 -~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~  218 (391)
T 1l0q_A          142 -VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTN  218 (391)
T ss_dssp             -EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEE
T ss_pred             -EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEe
Confidence             22222 2334445444 567999999986 55 678889999999999999999998888999999999 898888887


Q ss_pred             ---CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCcee
Q 012367          370 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       370 ---~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~  426 (465)
                         .++.|++||+.+++.+........+.+++|+|+|+.| ++++.||.|++||+.+++..
T Consensus       219 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence               6899999999998877755555678999999999987 56678999999999987653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=2.3e-16  Score=149.17  Aligned_cols=225  Identities=10%  Similarity=0.068  Sum_probs=152.1

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe----cC
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV----IP  291 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  291 (465)
                      .+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ +............     ....+.+...........    ..
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI-----CNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC-----BCSCCEECTTSSEEEEEECTTTSS
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc-----cccceEECCCCCEEEEEEeCCCCc
Confidence            3457899999999999999999987 78999999988 6544332221100     011112221111111111    01


Q ss_pred             Cceeee--cCCcceeeeccccceEEEEecCCC-EEE-EEeCCCeEEEEeC--CCCeEeEEecCCCceEEEEEccCCCCEE
Q 012367          292 DEVFQI--EESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       292 ~~~~~~--~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~--~~~~~l~~~~h~~~V~~i~fsp~~~~~l  365 (465)
                      ..++.+  .......+..+. .+..++|+|++ +|+ +++.|+.++||++  .++.......+...+.+++|+| +++++
T Consensus       110 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l  187 (297)
T 2ojh_A          110 SAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWI  187 (297)
T ss_dssp             CEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEE
T ss_pred             ceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEE
Confidence            233333  223344444443 48899999986 454 7888999999985  4555544446788999999999 88887


Q ss_pred             EEEe-CCCcEEEEeCC--CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-----------CcEEEEEecCCceeee-Ee
Q 012367          366 ISGS-IDGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLKLE-KV  430 (465)
Q Consensus       366 ~sgs-~Dg~I~iwd~~--~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-----------G~v~iwd~~~~~~~~~-~~  430 (465)
                      +.++ .++.++||++.  .+....+..+...+.+++|+|+|++|++++.+           +.|.+||+.+++.... ..
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence            7666 58999999874  45566677778889999999999999988876           5699999988765432 22


Q ss_pred             eecCcccccCCceeeEEEeecCCcc
Q 012367          431 DFHDRKKTSGNKITGIQGRISKNYD  455 (465)
Q Consensus       431 ~~~~~~~~~~~~It~~~f~p~gs~d  455 (465)
                      ..      +...+..+.|+|++.+-
T Consensus       268 ~~------~~~~~~~~~~spdg~~l  286 (297)
T 2ojh_A          268 FG------GQGTMNSPNWSPDGDEF  286 (297)
T ss_dssp             EE------STTTSCSCCBCTTSSEE
T ss_pred             CC------CCcccccceECCCCCEE
Confidence            22      23468888999988653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.73  E-value=4.4e-17  Score=164.70  Aligned_cols=184  Identities=12%  Similarity=0.148  Sum_probs=144.6

Q ss_pred             hhhccCCCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEecCCceeeeeeecCCCCcccccCCCe
Q 012367          216 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  275 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fsp--------------dg~~LaSgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  275 (465)
                      ..+.+|...++.+++++              .+..++.++.+      +.|++||+...                     
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---------------------  169 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---------------------  169 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---------------------
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---------------------
Confidence            34667777777777664              25667766654      79999998742                     


Q ss_pred             EEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCC---eEEEEeCCCCeEeEEecCCCc
Q 012367          276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY  351 (465)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg---tV~lWD~~~~~~l~~~~h~~~  351 (465)
                                               ....+.+|...|.+++|+|++ +|++++.|+   +|++||+.++++.....|...
T Consensus       170 -------------------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~  224 (415)
T 2hqs_A          170 -------------------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH  224 (415)
T ss_dssp             -------------------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             -------------------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence                                     245566788999999999986 888888885   999999999998776678889


Q ss_pred             eEEEEEccCCCCEEE-EEeCCCc--EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CC--cEEEEEecCCce
Q 012367          352 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL  425 (465)
Q Consensus       352 V~~i~fsp~~~~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG--~v~iwd~~~~~~  425 (465)
                      +.+++|+| ++++|+ +++.++.  |++||+.+++...+..|...+.+++|+|||+.|++++. +|  .|.+||+.+++.
T Consensus       225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            99999999 998777 6666655  99999999988888888899999999999999998886 45  567778877653


Q ss_pred             eeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          426 KLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      .  .+..+      ...+..+.|+|+|.+
T Consensus       304 ~--~l~~~------~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          304 Q--RITWE------GSQNQDADVSSDGKF  324 (415)
T ss_dssp             E--ECCCS------SSEEEEEEECTTSSE
T ss_pred             E--EEecC------CCcccCeEECCCCCE
Confidence            2  22222      356788999998865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.68  E-value=2.5e-15  Score=145.77  Aligned_cols=190  Identities=11%  Similarity=0.116  Sum_probs=134.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCC-CcEEEEecC--CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~D-g~V~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .|...+.+++|+|+|++|++++.+ +.|++|++.  ++...                                       
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------   75 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------------------------   75 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------------------------
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------------------------------------
Confidence            577889999999999999999887 999999987  32111                                       


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeC---CCCeEeEEecCCCceEEEEEccCCCCEEEEEe-C
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I  370 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~---~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~  370 (465)
                          .+..+..+. .+..++|+|++ +|++++ .++.|.+||+   .....+..+.....+.+++|+| +++++++++ .
T Consensus        76 ----~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~  149 (343)
T 1ri6_A           76 ----FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK  149 (343)
T ss_dssp             ----EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred             ----eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence                122222233 77899999986 565554 5899999999   4445666666667799999999 888888777 8


Q ss_pred             CCcEEEEeCCC-CeEEe------cccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC--Cceeee-EeeecCccccc
Q 012367          371 DGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS  439 (465)
Q Consensus       371 Dg~I~iwd~~~-~~~~~------~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~--~~~~~~-~~~~~~~~~~~  439 (465)
                      ++.|++||+.+ +++..      .......+..++|+|+|+++++++ .++.|.+|++..  +.+... .+.........
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            99999999987 65432      222345788999999999776665 789999999964  433322 22111111112


Q ss_pred             CCceeeEEEeecCCc
Q 012367          440 GNKITGIQGRISKNY  454 (465)
Q Consensus       440 ~~~It~~~f~p~gs~  454 (465)
                      ...+.++.|+|+|.+
T Consensus       230 ~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          230 TRWAADIHITPDGRH  244 (343)
T ss_dssp             CCCEEEEEECTTSSE
T ss_pred             cCCccceEECCCCCE
Confidence            345678899988753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.62  E-value=2e-14  Score=155.36  Aligned_cols=225  Identities=10%  Similarity=0.042  Sum_probs=149.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CC-----cEEEEecCCceeeeeeecCCCC----cccc--------------cCCCeEE
Q 012367          222 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGG----FGSN--------------AKEGKIK  277 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~-Dg-----~V~iWd~~~~~~~~~~~~~~~~----~~~~--------------~~~~~~~  277 (465)
                      ...|++++|||||++||+++. |+     .|++||+.++............    ....              .....+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     9999999887654333221110    0000              0011122


Q ss_pred             eccCCCCceeEecCCce--eeecCC---cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecC-CC
Q 012367          278 FGKKKSSHVPVVIPDEV--FQIEES---PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-HN  350 (465)
Q Consensus       278 ~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h-~~  350 (465)
                      +...+....... ...+  +++...   ....+..|...+.+++|+|++ +|++++ ++.|++||+.+++....... ..
T Consensus       116 ~SpDg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPL-GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEE-TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEe-CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            222221111111 1222  333444   566677888899999999987 566665 56999999999887665532 22


Q ss_pred             c----------------eEEEEEccCCCCEEEEEeCCC---------------------------------cEEEEeCCC
Q 012367          351 Y----------------VTCVQFNPIDDNYFISGSIDG---------------------------------KVRIWGVCE  381 (465)
Q Consensus       351 ~----------------V~~i~fsp~~~~~l~sgs~Dg---------------------------------~I~iwd~~~  381 (465)
                      .                +..++|+| ++++|++++.|+                                 .|++||+.+
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             ceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            2                47899999 999999988776                                 899999988


Q ss_pred             -CeEEecc---cCCCCeEEEEEeeCCCEEEEEEc-----CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          382 -KRVVDWA---DVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       382 -~~~~~~~---~~~~~V~sv~~spdg~~l~sgs~-----dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                       ++.....   .+...+.+++| |||+.|++++.     ++.|++||+.+++.... +..+..  .....+.++.|+|+|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~--~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL-AHETSP--TWVPLHNSLRFLDDG  348 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE-EEEECS--SCCCCCSCCEECTTS
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE-EEcCCC--CcCCcCCceEECCCC
Confidence             7765533   46778999999 99999998765     56899999998765432 111110  011134577888876


Q ss_pred             C
Q 012367          453 N  453 (465)
Q Consensus       453 s  453 (465)
                      .
T Consensus       349 ~  349 (741)
T 2ecf_A          349 S  349 (741)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=4.3e-15  Score=156.40  Aligned_cols=195  Identities=8%  Similarity=-0.015  Sum_probs=130.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCccc-ccCCCeEEeccCC---CCceeEecCCcee
Q 012367          221 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEGKIKFGKKK---SSHVPVVIPDEVF  295 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~  295 (465)
                      +..+|++++|+|||++||+++. ||+++||++.++............... ......+.+....   ....      .+|
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~------~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQH------ALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCE------EEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcce------EEE
Confidence            3567999999999999999987 999999998665543322111111111 0001122221111   0000      111


Q ss_pred             ee----cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          296 QI----EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       296 ~~----~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                      .+    ..... .+..+ ..+...+|+|++  .+++++.++.+.+||+.++++.....+..  .+++|+| +|+++++++
T Consensus        94 ~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~  168 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLG  168 (582)
T ss_dssp             EEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEE
T ss_pred             EEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEE
Confidence            11    11111 22211 123345666654  45555555555599999998777665554  8899999 999999888


Q ss_pred             CC----CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC--cEEEEEecCCcee
Q 012367          370 ID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLK  426 (465)
Q Consensus       370 ~D----g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG--~v~iwd~~~~~~~  426 (465)
                      .+    +.|++||+.+++...+..+...+..++|+|||+.|+++..+|  .|++||+.+++..
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            77    789999999998888888989999999999999999888888  8999999987765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.61  E-value=2.7e-14  Score=149.27  Aligned_cols=230  Identities=13%  Similarity=0.142  Sum_probs=146.1

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEec--CCceeeeeeecCCCCccc-ccC----CCe-EEeccCC
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV--TSVAASCKSFTDDGGFGS-NAK----EGK-IKFGKKK  282 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~-~~~----~~~-~~~~~~~  282 (465)
                      ...+.+++..+.. +.+++|+|+|++|++++.|++|++||+  .+................ ...    .+. +......
T Consensus       168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~  246 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW  246 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence            3344556653333 899999999999999999999999999  676655443321111100 011    111 1111111


Q ss_pred             CCceeEecCCceeeecCCcceeeec----------ccc-ceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE--Eec
Q 012367          283 SSHVPVVIPDEVFQIEESPLQELHG----------HKG-DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN--VFD  347 (465)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~g----------h~~-~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~--~~~  347 (465)
                      .....++...     ..+++..+..          |.. .+..+.++|++  ++++...+++|.+||+.+.+.+.  .+.
T Consensus       247 ~~~v~v~D~~-----t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          247 PPQFAIMDGE-----TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             SSEEEEEETT-----TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             CCeEEEEecc-----ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            1111111111     1233444433          333 78899999864  67788889999999998876554  556


Q ss_pred             CCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeC-CCEEEEEE-cCCcEEEEE
Q 012367          348 HHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPD-GKGFIVGS-ITGTCHFYK  419 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spd-g~~l~sgs-~dG~v~iwd  419 (465)
                      +...+..+.|+| ++++|++++ .+++|.+||+.+++++....     |......+ ++|+ |..++++. .|++|.+||
T Consensus       322 ~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          322 AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence            777899999999 999776554 58999999999998876332     44444443 5787 55566665 589999999


Q ss_pred             ecCCc-----e-eeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          420 ASGND-----L-KLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       420 ~~~~~-----~-~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +.+.+     . .+..+..++      ..+..+.|+|++.+
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g------~~~~~v~~~pdg~~  434 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQG------GGSLFIKTHPKSSH  434 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSC------SCCCCEECCTTCCE
T ss_pred             eCCCCCchhcCeEEEEEEcCC------CCceEEEcCCCCCc
Confidence            98721     1 223444443      45667778887644

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=1.2e-13  Score=133.94  Aligned_cols=186  Identities=10%  Similarity=0.120  Sum_probs=133.0

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ..+..+...+ +++|+|+|++|++++. ++.|.+||+.++...                                     
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-------------------------------------   75 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-------------------------------------   75 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-------------------------------------
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-------------------------------------
Confidence            3344456667 9999999997766665 899999999864320                                     


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCC---eEEEEeCCCCeEeEEecCCCceEEEEEccCCCC-EEEEEe
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-YFISGS  369 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg---tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~-~l~sgs  369 (465)
                             ...+..+..++.+++|+|++ +++++..++   .|.+||+.+++.+..+.+...+.+++|+| +++ +++++.
T Consensus        76 -------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~  147 (331)
T 3u4y_A           76 -------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR  147 (331)
T ss_dssp             -------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred             -------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence                   22333444555558999986 566444442   99999999999999888777889999999 876 455556


Q ss_pred             CCCc-EEEEeCCCCe-EE----ecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCcee--eeEeeecCcccccC
Q 012367          370 IDGK-VRIWGVCEKR-VV----DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK--LEKVDFHDRKKTSG  440 (465)
Q Consensus       370 ~Dg~-I~iwd~~~~~-~~----~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~--~~~~~~~~~~~~~~  440 (465)
                      .++. |.+|++.... +.    ........+..++|+|+|+++++++ .++.|++||+.+++..  ...+.       ..
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-------~~  220 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-------TN  220 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-------CS
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-------CC
Confidence            6688 9999987532 21    2224456689999999999766655 5899999999887751  11222       12


Q ss_pred             CceeeEEEeecCCc
Q 012367          441 NKITGIQGRISKNY  454 (465)
Q Consensus       441 ~~It~~~f~p~gs~  454 (465)
                      ..+.++.|+|+|.+
T Consensus       221 ~~~~~~~~spdg~~  234 (331)
T 3u4y_A          221 NLPGTIVVSRDGST  234 (331)
T ss_dssp             SCCCCEEECTTSSE
T ss_pred             CCCceEEECCCCCE
Confidence            46778899998873

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.59  E-value=8e-14  Score=145.70  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=154.4

Q ss_pred             cchhhhccCCCcEEEEEECC----CCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcc-----cccCCCeEEeccCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSP----DGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFG-----SNAKEGKIKFGKKK  282 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fsp----dg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  282 (465)
                      ....++. +...+..++|+|    +|++|++++. +++|.|||..+.+.............     .......+.+....
T Consensus       213 ~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          213 TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence            3344555 445679999999    9999999985 89999999988776654433110000     00000111111111


Q ss_pred             CCc-eeEecCCceeeec--C-Ccce-eeeccccceEEEEecCCC-EEE-EEeCCCeEEEEeCCCCeEeEEec-----CCC
Q 012367          283 SSH-VPVVIPDEVFQIE--E-SPLQ-ELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFD-----HHN  350 (465)
Q Consensus       283 ~~~-~~~~~~~~~~~~~--~-~~~~-~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~~~~~~l~~~~-----h~~  350 (465)
                      ... ......+.++.+.  . +.+. ....+...+.++.|+|++ +++ ++..+++|.+||+.+++++..+.     |..
T Consensus       292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred             CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence            111 1111112222221  1 1111 122356678889999986 455 55568999999999999988875     544


Q ss_pred             ceEEEEEccCCCCEEEEEe-CCCcEEEEeCCC-------CeEEe-cccCCCCeEEEEEeeCCCEEEEEE-------cCCc
Q 012367          351 YVTCVQFNPIDDNYFISGS-IDGKVRIWGVCE-------KRVVD-WADVRDVISAICYIPDGKGFIVGS-------ITGT  414 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~-------~~~~~-~~~~~~~V~sv~~spdg~~l~sgs-------~dG~  414 (465)
                      ....+ ++|..+.++++++ .|++|.+||+.+       .+++. +..|...+..++++|+|++|++++       .+++
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~  450 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS  450 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred             CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence            44443 5673477788876 589999999987       56655 666777889999999999999988       3789


Q ss_pred             EEEEEecCCceeeeEeeecC--cccccCCceeeEEEeecCCc
Q 012367          415 CHFYKASGNDLKLEKVDFHD--RKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       415 v~iwd~~~~~~~~~~~~~~~--~~~~~~~~It~~~f~p~gs~  454 (465)
                      |.+||+.+.+..+..+....  ....+.+.+..+.|+|+|.+
T Consensus       451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~  492 (543)
T 1nir_A          451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  492 (543)
T ss_dssp             EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE
T ss_pred             EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE
Confidence            99999998886645443211  01123578999999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.58  E-value=2e-14  Score=154.82  Aligned_cols=167  Identities=12%  Similarity=0.095  Sum_probs=125.1

Q ss_pred             hhhhccCCC---cEEEEEECCCCCEEEEEeCC---------CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC
Q 012367          215 SQEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK  282 (465)
Q Consensus       215 ~~~l~~H~~---~I~~l~fspdg~~LaSgs~D---------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (465)
                      .+.+.+|..   .|.+++|||||++||+++.+         +.|.+||+.++...                         
T Consensus        50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------  104 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------  104 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------
T ss_pred             EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------
Confidence            344555654   49999999999999999875         77889999875321                         


Q ss_pred             CCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCce--------
Q 012367          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV--------  352 (465)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V--------  352 (465)
                                        .+....+|...+..++|+|++ .|++++. +.|++||+.+++...... +...+        
T Consensus       105 ------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A          105 ------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             ------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred             ------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence                              011122455668889999987 6777765 899999999988776654 23323        


Q ss_pred             ----------EEEEEccCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeE-Eec
Q 012367          353 ----------TCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDW  387 (465)
Q Consensus       353 ----------~~i~fsp~~~~~l~sgs~Dg----------------------------------~I~iwd~~~~~~-~~~  387 (465)
                                .+++|+| ++++|++++.|+                                  .|++||+.+++. ..+
T Consensus       166 v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                      7899999 999999988653                                  799999988874 344


Q ss_pred             ccC------CCCeEEEEEeeCCCEEEEEEc----CCcEEEEEecCCcee
Q 012367          388 ADV------RDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK  426 (465)
Q Consensus       388 ~~~------~~~V~sv~~spdg~~l~sgs~----dG~v~iwd~~~~~~~  426 (465)
                      ..+      ...+.+++|+|||+.|++.+.    ++.|++||+.+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~  293 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence            433      567899999999998877754    357999999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.58  E-value=1.9e-13  Score=133.34  Aligned_cols=175  Identities=9%  Similarity=0.068  Sum_probs=133.3

Q ss_pred             EEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          225 IWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      +.+++|+|+|+++++++  .++.|.+||..+....                                             
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~---------------------------------------------  177 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLK---------------------------------------------  177 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE---------------------------------------------
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceE---------------------------------------------
Confidence            78999999999877776  5889999999875432                                             


Q ss_pred             eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeC-CCcEE
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-DGKVR  375 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~  375 (465)
                      ..+..+...+.+++|+|++ +|++++.++.|.+||+.+++.+..+.     +...+..++|+| ++++++.++. ++.|.
T Consensus       178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~  256 (353)
T 3vgz_A          178 TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVL  256 (353)
T ss_dssp             EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEE
T ss_pred             EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEE
Confidence            2222234456788999975 78888899999999999999888774     355688999999 8887666654 59999


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +||+.+++.+....... ...++|+|+|+.+++++ .++.|.+||+.+++... .+..       .....++.|+|+|.+
T Consensus       257 ~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~-~~~~-------~~~~~~~~~s~dg~~  327 (353)
T 3vgz_A          257 VVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK-TFDT-------PTHPNSLALSADGKT  327 (353)
T ss_dssp             EEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EEEC-------CSEEEEEEECTTSCE
T ss_pred             EEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE-EEec-------CCCCCeEEEcCCCCE
Confidence            99999988776444333 36799999999776666 68999999998876532 2322       235788999998874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.58  E-value=4.7e-13  Score=130.47  Aligned_cols=218  Identities=10%  Similarity=0.105  Sum_probs=147.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-------CCcEEEEecCCceeeeeeecCCCCcc-cccCCC-eEEeccCCCCceeEecC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEG-KIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~-------Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  291 (465)
                      +...+..++|+|+|++|++++.       ++.|.+||..++.............. .....+ .+.+.........++..
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            4566889999999998888874       56899999998776655443222111 111111 12222222222222211


Q ss_pred             CceeeecCCcceeeecccc---------ceEEEEecCCC-EEEEEe--CCCeEEEEeCCCCeEeEEec-CCCceEEEEEc
Q 012367          292 DEVFQIEESPLQELHGHKG---------DVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN  358 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~---------~V~~l~~s~~~-~l~s~s--~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fs  358 (465)
                      .     ..+.+..+..+..         .+.+++|+|++ ++++++  .++.|.+||+.+++.+..+. +...+.+++|+
T Consensus       119 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          119 K-----TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             T-----TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             C-----CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            1     1233344443322         27889999975 555544  58899999999999999887 66678999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeee
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDF  432 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~  432 (465)
                      | +++++++++.++.|.+||+.+++......     +...+..++|+|+|+.+++++. ++.|.+||+.+++... .+..
T Consensus       194 ~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~  271 (353)
T 3vgz_A          194 S-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-KVAA  271 (353)
T ss_dssp             T-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-EEEC
T ss_pred             C-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEc
Confidence            9 99999999999999999999988775322     4556889999999998877776 4999999998876532 2322


Q ss_pred             cCcccccCCceeeEEEeecCC
Q 012367          433 HDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       433 ~~~~~~~~~~It~~~f~p~gs  453 (465)
                      ..        -.++.|+|+|.
T Consensus       272 ~~--------~~~~~~s~dg~  284 (353)
T 3vgz_A          272 PE--------SLAVLFNPARN  284 (353)
T ss_dssp             SS--------CCCEEEETTTT
T ss_pred             CC--------CceEEECCCCC
Confidence            21        24677888765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.57  E-value=1.1e-13  Score=135.28  Aligned_cols=190  Identities=14%  Similarity=0.155  Sum_probs=130.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+...+..++|+|+|+ |++++.   ++.|.+|++.++...                                       
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------------------------   76 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------------------------   76 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------------------------
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------------------------
Confidence            4556778899999999 555544   689999999654321                                       


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCC-CC--eEeEEecCC----------CceEEEEEccCC
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID  361 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~-~~--~~l~~~~h~----------~~V~~i~fsp~~  361 (465)
                          .+..+..+...+..++|+|++ +|++++ .+++|.+|++. ++  ..+..+.+.          ..+.+++|+| +
T Consensus        77 ----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d  151 (347)
T 3hfq_A           77 ----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D  151 (347)
T ss_dssp             ----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred             ----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence                123334466778899999986 677776 78999999996 33  334444332          2488999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCC-CCeEEec----ccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecC--Cceeee-Eeee
Q 012367          362 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG--NDLKLE-KVDF  432 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~-~~~~~~~----~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~--~~~~~~-~~~~  432 (465)
                      ++++++...++.|++|++. ++.+...    ......+..++|+|||++++++ ..++.|.+|++..  +++... .+..
T Consensus       152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  231 (347)
T 3hfq_A          152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT  231 (347)
T ss_dssp             SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence            8877777778999999998 5554321    2233468889999999976664 5688999999985  444322 2222


Q ss_pred             cCcccccCCceeeEEEeecCCc
Q 012367          433 HDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       433 ~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ..........+.++.|+|+|.+
T Consensus       232 ~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          232 IPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             SCTTCCSCCEEEEEEECTTSCE
T ss_pred             cCCCCCCCCcceeEEECCCCCE
Confidence            1111112256888999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.57  E-value=1.2e-13  Score=133.80  Aligned_cols=192  Identities=12%  Similarity=0.124  Sum_probs=132.8

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDG---VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..|..++.+++|+|+|++|+++..++   .|.+||+.++....                                  
T Consensus        77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~----------------------------------  122 (331)
T 3u4y_A           77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS----------------------------------  122 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE----------------------------------
T ss_pred             EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE----------------------------------
Confidence            44556777776799999999999655553   89999998754321                                  


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCe-EEEEeCCCCeEe-----EEecCCCceEEEEEccCCCCE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKT-VRMWQVGCNQCL-----NVFDHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~Dgt-V~lWD~~~~~~l-----~~~~h~~~V~~i~fsp~~~~~  364 (465)
                                 .+. +...+.+++|+|++  +++++..++. |.+|++.....+     ..+.....+.+++|+| ++++
T Consensus       123 -----------~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~  189 (331)
T 3u4y_A          123 -----------TIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNF  189 (331)
T ss_dssp             -----------EEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSE
T ss_pred             -----------EEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCE
Confidence                       121 22345799999986  4455566688 999998754332     2334556789999999 8885


Q ss_pred             E-EEEeCCCcEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeee-EeeecC-ccc
Q 012367          365 F-ISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE-KVDFHD-RKK  437 (465)
Q Consensus       365 l-~sgs~Dg~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~-~~~~~~-~~~  437 (465)
                      + +++..++.|++||+.+++.   +........+..++|+|||+++++++ .++.|.+||+.++++... .+...- ...
T Consensus       190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  269 (331)
T 3u4y_A          190 AFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP  269 (331)
T ss_dssp             EEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred             EEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence            5 4555689999999998876   55555567789999999999877665 478899999998877433 222110 000


Q ss_pred             ccCCceeeEEEeecCCc
Q 012367          438 TSGNKITGIQGRISKNY  454 (465)
Q Consensus       438 ~~~~~It~~~f~p~gs~  454 (465)
                      .......++.|+|+|.+
T Consensus       270 ~~~~~~~~~~~spdg~~  286 (331)
T 3u4y_A          270 RPLFGANQMALNKTETK  286 (331)
T ss_dssp             GGGTTCCCEEECTTSSE
T ss_pred             CCcccccceEECCCCCE
Confidence            11122356889998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.57  E-value=3.6e-14  Score=159.71  Aligned_cols=177  Identities=8%  Similarity=0.039  Sum_probs=143.4

Q ss_pred             CCCcEEEEEEC-CCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          221 HKGCIWTLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       221 H~~~I~~l~fs-pdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      |.+.|.+++|| |+|++||+++ ++.|.+|++.++.                                            
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~--------------------------------------------  328 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY--------------------------------------------  328 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB--------------------------------------------
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc--------------------------------------------
Confidence            56689999999 9999999988 7899999987532                                            


Q ss_pred             Ccceeeecccc-ceEEEEecCCC-EEEEEeCCCeEE-EEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          300 SPLQELHGHKG-DVLDLAWSNSN-YLLSCSMDKTVR-MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       300 ~~~~~~~gh~~-~V~~l~~s~~~-~l~s~s~DgtV~-lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                        ...+..|.. .+..++|+ ++ .|++++.+..+. +||+.++.......|...+.+++|+| ++++|++++.++.|++
T Consensus       329 --~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          329 --VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             --EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             --eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEE
Confidence              122335666 88999999 75 788888888898 99998877655446778999999999 9999999999999999


Q ss_pred             EeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCC----------cEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          377 WGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITG----------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       377 wd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      ||+.+++..... +|...+.+++|+|||++|++++.++          .|++||+.+++.  ..+..      +...+..
T Consensus       405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~--~~l~~------~~~~~~~  476 (1045)
T 1k32_A          405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATT------ENSHDYA  476 (1045)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSC------SSSBEEE
T ss_pred             EECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE--EEeeC------CCcccCC
Confidence            999998877654 7888899999999999999888754          899999998752  22221      2345677


Q ss_pred             EEEeecCCc
Q 012367          446 IQGRISKNY  454 (465)
Q Consensus       446 ~~f~p~gs~  454 (465)
                      +.|+|+|.+
T Consensus       477 ~~~spdG~~  485 (1045)
T 1k32_A          477 PAFDADSKN  485 (1045)
T ss_dssp             EEECTTSCE
T ss_pred             ceEcCCCCE
Confidence            889998874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.56  E-value=8.9e-15  Score=157.58  Aligned_cols=181  Identities=15%  Similarity=0.168  Sum_probs=131.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .+.+++|+|||+++++ +.||+|++||+.++..                                             ..
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------------------------~~   51 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------------------------TV   51 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------------------------EE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------------------------EE
Confidence            4678999999998877 7899999999987532                                             22


Q ss_pred             eeecccc---ceEEEEecCCC-EEEEEeCC---------CeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEE
Q 012367          304 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       304 ~~~gh~~---~V~~l~~s~~~-~l~s~s~D---------gtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~  366 (465)
                      .+.+|..   .|.+++|+|++ +|++++.+         +.|.+||+.++++ ..+.    |...+..++|+| ++++|+
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la  129 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLI  129 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC-CCCEEE
Confidence            2333433   48899999986 78888764         7888999998876 3332    344589999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEeccc-CCCC------------------eEEEEEeeCCCEEEEEEcCC--------------
Q 012367          367 SGSIDGKVRIWGVCEKRVVDWAD-VRDV------------------ISAICYIPDGKGFIVGSITG--------------  413 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~~~~-~~~~------------------V~sv~~spdg~~l~sgs~dG--------------  413 (465)
                      .++. +.|++||+.+++...+.. +...                  +.+++|+|||+.|++++.++              
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~  208 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS  208 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred             EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence            9885 899999999877655332 2322                  37899999999999988653              


Q ss_pred             --------------------cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          414 --------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       414 --------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                                          .|++||+.+++... .+..+.....+...+..+.|+|+|.+
T Consensus       209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             CCCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCCeE
Confidence                                78888887765311 22222111122457888999998853

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.56  E-value=3.3e-13  Score=130.69  Aligned_cols=179  Identities=13%  Similarity=0.193  Sum_probs=122.8

Q ss_pred             cEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          224 CIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      .+..++|+|+|++|++++. ++.|.+||+..+...                                          ...
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------------------------------------------~~~  122 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV------------------------------------------GVV  122 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE------------------------------------------EEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc------------------------------------------ccc
Confidence            7889999999998877665 889999998422110                                          111


Q ss_pred             eeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCC-CeEeE----Ee--cCCCceEEEEEccCCCCEEEEE-eCCC
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLN----VF--DHHNYVTCVQFNPIDDNYFISG-SIDG  372 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~-~~~l~----~~--~h~~~V~~i~fsp~~~~~l~sg-s~Dg  372 (465)
                      ..+.. ...+.+++|+|++ ++++++ .++.|++||+.+ ++...    .+  .....+.+++|+| ++++++++ ..++
T Consensus       123 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~  200 (343)
T 1ri6_A          123 DVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNS  200 (343)
T ss_dssp             EEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTT
T ss_pred             ccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCC
Confidence            22222 2357889999986 666666 899999999987 65432    22  2455789999999 88866554 4789


Q ss_pred             cEEEEeCCC--CeEE--e-cc---c---CCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEec--CCceeee-EeeecCccc
Q 012367          373 KVRIWGVCE--KRVV--D-WA---D---VRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLE-KVDFHDRKK  437 (465)
Q Consensus       373 ~I~iwd~~~--~~~~--~-~~---~---~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~--~~~~~~~-~~~~~~~~~  437 (465)
                      .|++||+..  +...  . ..   .   ....+..++|+|+|++|+++. .++.|.+|++.  ++..... .+...    
T Consensus       201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~----  276 (343)
T 1ri6_A          201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE----  276 (343)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS----
T ss_pred             EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC----
Confidence            999999953  4321  1 11   1   134577899999999887555 68999999998  4333332 22222    


Q ss_pred             ccCCceeeEEEeecCC
Q 012367          438 TSGNKITGIQGRISKN  453 (465)
Q Consensus       438 ~~~~~It~~~f~p~gs  453 (465)
                         ..+.++.|+|+|.
T Consensus       277 ---~~~~~~~~s~dg~  289 (343)
T 1ri6_A          277 ---TQPRGFNVDHSGK  289 (343)
T ss_dssp             ---SSCCCEEECTTSS
T ss_pred             ---CccceEEECCCCC
Confidence               2377889988875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.54  E-value=7.2e-13  Score=127.97  Aligned_cols=196  Identities=11%  Similarity=0.092  Sum_probs=128.7

Q ss_pred             cEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe------------c
Q 012367          224 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV------------I  290 (465)
Q Consensus       224 ~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  290 (465)
                      .+.+++|+|+|+++ ++++.++.|.+||+.++............. .......+.+...+.......            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-EEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-ccccccceEECCCCCEEEEEeccccccccccccc
Confidence            47889999999865 566678999999998877654433221000 000011111211111111110            1


Q ss_pred             CCce--eeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCC-----------------
Q 012367          291 PDEV--FQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----------------  349 (465)
Q Consensus       291 ~~~~--~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~-----------------  349 (465)
                      ...+  ++... +.+..+.. ...+.+++|+|++ +|+++  ++.|.+||+.+++.+..+...                 
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  190 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             CceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence            1222  22222 22333332 4467788999986 46666  688999999888776555311                 


Q ss_pred             --------------------------------------------------CceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          350 --------------------------------------------------NYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       350 --------------------------------------------------~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                                                                        ..+.+++|+| ++++++++  ++.|++||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEET
T ss_pred             eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEEC
Confidence                                                              1244689999 99998888  799999999


Q ss_pred             CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .+++.+........+.+++|+|+|++|++++.++.|.+||+.+++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            99988776556677899999999999999999999999999987653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.54  E-value=1.6e-12  Score=127.96  Aligned_cols=220  Identities=15%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC----CcEEEEecCC--ceeeeeeec--CCCCcccccCCCe-EEeccCCCCceeEecC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTS--VAASCKSFT--DDGGFGSNAKEGK-IKFGKKKSSHVPVVIP  291 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~D----g~V~iWd~~~--~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  291 (465)
                      |......++|+|+|++|++++.+    +.|.+|++..  +........  ...........+. +...........+   
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~---  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITV---  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEE---
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEE---
Confidence            66778889999999999999986    8999999865  332221111  1111000000111 2222111111111   


Q ss_pred             Cceeeec-CCcce---e---e--------eccccceEEEEecCCC-EEE-EEeCCCeEEEEeCCCCe-------E-----
Q 012367          292 DEVFQIE-ESPLQ---E---L--------HGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQ-------C-----  342 (465)
Q Consensus       292 ~~~~~~~-~~~~~---~---~--------~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~~~~~-------~-----  342 (465)
                         |.+. ...+.   .   .        ..+...+.+++|+|++ +|+ ++..++.|.+|++....       .     
T Consensus       125 ---~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          125 ---FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             ---EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             ---EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence               2211 00110   0   0        1123346889999987 454 44458999999886543       1     


Q ss_pred             --eEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEe------cccCCCCeEEEEEeeCCCEEEEEEcC-
Q 012367          343 --LNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSIT-  412 (465)
Q Consensus       343 --l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~------~~~~~~~V~sv~~spdg~~l~sgs~d-  412 (465)
                        .....+...+..++|+| +++++++++ .++.|.+||+.++.+..      ...+...+..++|+|||++|+++..+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence              22234566788999999 999887776 68999999998776532      12234557899999999998777665 


Q ss_pred             -CcEEEEEec--CCceeee-EeeecCcccccCCceeeEEEeecCCc
Q 012367          413 -GTCHFYKAS--GNDLKLE-KVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       413 -G~v~iwd~~--~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                       +.|.+|++.  ++++... .+..       +..+.++.|+|+|.+
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~-------g~~~~~~~~spdg~~  319 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT-------GIHPRNFIITPNGKY  319 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC-------SSCCCEEEECTTSCE
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC-------CCCCceEEECCCCCE
Confidence             899999996  4444332 2222       246778999999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.53  E-value=7.6e-14  Score=150.03  Aligned_cols=197  Identities=14%  Similarity=0.157  Sum_probs=133.7

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC-----ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +..|.+.+.+++|||||++||++ .|+.|++|++.+     +...........         .+..              
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~---------~~~~--------------  171 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE---------TLVY--------------  171 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT---------TEEE--------------
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC---------CeEc--------------
Confidence            44567778899999999999985 679999999876     432211000000         0000              


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCC-EEEEEe---------------------------------CCCeEEEEeCC
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS---------------------------------MDKTVRMWQVG  338 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s---------------------------------~DgtV~lWD~~  338 (465)
                            +.+  ....+...+.+++|+|++ +|++++                                 .+..|++||+.
T Consensus       172 ------g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          172 ------GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             ------SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             ------ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence                  000  112233456789999986 777776                                 45789999999


Q ss_pred             CCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCC-----cEEEEeCCCC-eEEecc--cCCC---CeEEEEEee--C
Q 012367          339 CNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK-RVVDWA--DVRD---VISAICYIP--D  402 (465)
Q Consensus       339 ~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg-----~I~iwd~~~~-~~~~~~--~~~~---~V~sv~~sp--d  402 (465)
                      +++.....   .|...+.+++|+| ++++|++++.++     .|++||+.++ ......  .+..   .+.+++|+|  |
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          244 TGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             TTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred             CCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence            98876554   3667899999999 999999988776     8999999988 444332  2222   347789999  9


Q ss_pred             CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee-EEEeecCC
Q 012367          403 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQGRISKN  453 (465)
Q Consensus       403 g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~-~~f~p~gs  453 (465)
                      |+++++++.+|.+++|.+.........+..+      ...+.+ +.|+|+|.
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~------~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG------EWEVTNFAGFDPKGT  368 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSCEEEECCCS------SSCEEEEEEECTTSS
T ss_pred             CEEEEEEccCCccEEEEEECCCCEEEecCCC------CeEEEeeeEEcCCCC
Confidence            9999999999999999987322222233211      234555 67877764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.52  E-value=8.1e-13  Score=129.15  Aligned_cols=196  Identities=12%  Similarity=0.115  Sum_probs=128.7

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCCc-eeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      +..|...+..++|+|+|++|++++ .++.|.+|++... ..........                          .    
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------------------~----  130 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH--------------------------S----  130 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC--------------------------C----
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec--------------------------C----
Confidence            345777889999999999998888 7899999999631 1110000000                          0    


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC-CCeEeE--Ee--cCCCceEEEEEccCCCCEEEE-E
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLN--VF--DHHNYVTCVQFNPIDDNYFIS-G  368 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~-~~~~l~--~~--~h~~~V~~i~fsp~~~~~l~s-g  368 (465)
                        ...+.  ...+...+.+++|+|++ ++++...++.|.+||+. ++....  .+  .....+..++|+| +++++++ +
T Consensus       131 --~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~  205 (347)
T 3hfq_A          131 --GHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAG  205 (347)
T ss_dssp             --CCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEE
T ss_pred             --CCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEe
Confidence              00000  11234568899999986 55566678899999998 554332  22  2334688999999 8886555 5


Q ss_pred             eCCCcEEEEeCCC--CeEEe---cccCC------CCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCC-ceeee-EeeecC
Q 012367          369 SIDGKVRIWGVCE--KRVVD---WADVR------DVISAICYIPDGKGFI-VGSITGTCHFYKASGN-DLKLE-KVDFHD  434 (465)
Q Consensus       369 s~Dg~I~iwd~~~--~~~~~---~~~~~------~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~-~~~~~-~~~~~~  434 (465)
                      ..++.|++|++..  +....   .....      ..+..++|+|||++|+ +...++.|.+|++... .+... .+..+ 
T Consensus       206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-  284 (347)
T 3hfq_A          206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-  284 (347)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-
T ss_pred             CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-
Confidence            6688999999874  54321   11111      4588999999999875 4556899999999733 33222 22222 


Q ss_pred             cccccCCceeeEEEeecCCc
Q 012367          435 RKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       435 ~~~~~~~~It~~~f~p~gs~  454 (465)
                           ...+.++.|+|+|.+
T Consensus       285 -----~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          285 -----GDFPRDFDLDPTEAF  299 (347)
T ss_dssp             -----SSCCCEEEECTTSSE
T ss_pred             -----CCCcCeEEECCCCCE
Confidence                 345788999999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.51  E-value=2.2e-13  Score=146.48  Aligned_cols=179  Identities=9%  Similarity=0.037  Sum_probs=128.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      ...|.+++|||+ ++++.+. |+.|++||+.++..                                             
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~---------------------------------------------  113 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV---------------------------------------------  113 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE---------------------------------------------
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCce---------------------------------------------
Confidence            357999999999 6555553 59999999987432                                             


Q ss_pred             ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-----CeEeEEec-CCCc--------------eEEEEEccC
Q 012367          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFD-HHNY--------------VTCVQFNPI  360 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-----~~~l~~~~-h~~~--------------V~~i~fsp~  360 (465)
                       ..+..+...+.+++|+|++ .|++ +.|+.|++||+.+     ++...... +...              +.+++|+| 
T Consensus       114 -~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-  190 (706)
T 2z3z_A          114 -TYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-  190 (706)
T ss_dssp             -EEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred             -EEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence             1223355667889999987 5666 5789999999998     77665443 2222              58999999 


Q ss_pred             CCCEEEEEe---------------------------------CCCcEEEEeCCCCeEEecc---cCCCCeEEEEEeeCCC
Q 012367          361 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK  404 (465)
Q Consensus       361 ~~~~l~sgs---------------------------------~Dg~I~iwd~~~~~~~~~~---~~~~~V~sv~~spdg~  404 (465)
                      ++++|++++                                 .+..|++||+.+++.....   .+...+.+++|+|||+
T Consensus       191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence            999999988                                 4467999999998876543   4667899999999999


Q ss_pred             EEEEEEcCC-----cEEEEEecCC-ceeeeEeeecCcccccCCceeeEEEee--cCC
Q 012367          405 GFIVGSITG-----TCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQGRI--SKN  453 (465)
Q Consensus       405 ~l~sgs~dG-----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~It~~~f~p--~gs  453 (465)
                      .|++++.++     .|++||+.++ ...........   .....+.++.|+|  +|.
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~---~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK---HYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS---SCCCCCSCCEECTTCSSE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC---CeECccCCceeecCCCCE
Confidence            999988776     8999999987 33222111111   0112346677887  654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.51  E-value=1.8e-12  Score=125.86  Aligned_cols=197  Identities=10%  Similarity=0.090  Sum_probs=126.0

Q ss_pred             cEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec------------
Q 012367          224 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI------------  290 (465)
Q Consensus       224 ~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  290 (465)
                      .+..++|+|+|+++ +++..++.|.+||+.++.....................+.+...+........            
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            57789999999865 45567899999999987765444322110000000111111111111111110            


Q ss_pred             CCce--eeecC----CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCC--------------
Q 012367          291 PDEV--FQIEE----SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--------------  350 (465)
Q Consensus       291 ~~~~--~~~~~----~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--------------  350 (465)
                      ...+  +++..    ..+..+. +...+.+++|+|++.++.++.  .|.+||+.+++.+..+....              
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             CCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence            1222  22221    2223333 344688999999876666543  49999999988877664221              


Q ss_pred             -------------------------------------------------------ceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          351 -------------------------------------------------------YVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       351 -------------------------------------------------------~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                                                                             .+..++|+|.++++++++  ++.|.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~  278 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA  278 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence                                                                   234556666467777777  88999


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +||+.+++.+........+.+++|+|+|+.|++++.++.|.+||+.+.+.
T Consensus       279 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          279 KYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence            99999998876555556788999999999999988899999999988765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.51  E-value=1.5e-12  Score=140.61  Aligned_cols=229  Identities=9%  Similarity=0.051  Sum_probs=144.2

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc----------cCCCeEEeccCCCCc
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN----------AKEGKIKFGKKKSSH  285 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  285 (465)
                      +.+..|.+.+.+++|||||++||+++. +.|.+||+.++................          .....+.+...+...
T Consensus       145 ~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l  223 (741)
T 2ecf_A          145 RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI  223 (741)
T ss_dssp             CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred             EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence            456788899999999999999999985 689999998865543222111100000          000111121111111


Q ss_pred             eeEecCC---------------------------------cee--eecC-Ccceeee---ccccceEEEEecCCC-EEEE
Q 012367          286 VPVVIPD---------------------------------EVF--QIEE-SPLQELH---GHKGDVLDLAWSNSN-YLLS  325 (465)
Q Consensus       286 ~~~~~~~---------------------------------~~~--~~~~-~~~~~~~---gh~~~V~~l~~s~~~-~l~s  325 (465)
                      .......                                 .++  ++.. .....+.   .|...+..++| |++ +|++
T Consensus       224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~  302 (741)
T 2ecf_A          224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSF  302 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEE
T ss_pred             EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEE
Confidence            1111000                                 122  2222 2222222   47788999999 986 5665


Q ss_pred             EeC-----CCeEEEEeCCCCeEeEEec-CCC----ceEEEEEccCCCCEEEEEeCCCcEEEEeCC-CCeEEecccCCCCe
Q 012367          326 CSM-----DKTVRMWQVGCNQCLNVFD-HHN----YVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVI  394 (465)
Q Consensus       326 ~s~-----DgtV~lWD~~~~~~l~~~~-h~~----~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V  394 (465)
                      ++.     +..|++||+.++++...+. +..    .+..++|+| +++++++++.|+.++||.+. .+....+..+...|
T Consensus       303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v  381 (741)
T 2ecf_A          303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSV  381 (741)
T ss_dssp             EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCE
T ss_pred             EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEE
Confidence            543     5789999999998877774 222    456899999 89999999999988887664 33355677777888


Q ss_pred             EEE-EEeeCCCEEEEE-EcCC--cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          395 SAI-CYIPDGKGFIVG-SITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       395 ~sv-~~spdg~~l~sg-s~dG--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ..+ .|+|+|+.|+.. +.++  .+++|++.........+..       ...+..+.|+|+|.+
T Consensus       382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-------~~~~~~~~~spdg~~  438 (741)
T 2ecf_A          382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-------APGMHSASFARNASV  438 (741)
T ss_dssp             EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-------SCSEEEEEECTTSSE
T ss_pred             EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-------CCCceEEEECCCCCE
Confidence            887 599999977654 4455  8999998743222222211       234678889998865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.50  E-value=3.9e-14  Score=152.72  Aligned_cols=178  Identities=8%  Similarity=0.073  Sum_probs=125.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee
Q 012367          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (465)
Q Consensus       227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (465)
                      .++|+|+|++++++ .|++|++||+.++...                                             ..+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------------------------~~~~   53 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------------------------TILS   53 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------------------------EEEC
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------------------------EEEc
Confidence            78999999766654 6999999999875331                                             2222


Q ss_pred             cccc---ceEEEEecCCC-EEEEEeC---------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          307 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       307 gh~~---~V~~l~~s~~~-~l~s~s~---------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      +|..   .|.+++|+|++ +|++++.         +++|++||+.+++.+........+..++|+| +++.|+.+. ++.
T Consensus        54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~  131 (719)
T 1z68_A           54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN  131 (719)
T ss_dssp             HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred             cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence            3332   48899999986 6777765         7899999999998732222345789999999 999999886 789


Q ss_pred             EEEEeCCCCeEEecc--cCCCCe-----------------EEEEEeeCCCEEEEEEcCC---------------------
Q 012367          374 VRIWGVCEKRVVDWA--DVRDVI-----------------SAICYIPDGKGFIVGSITG---------------------  413 (465)
Q Consensus       374 I~iwd~~~~~~~~~~--~~~~~V-----------------~sv~~spdg~~l~sgs~dG---------------------  413 (465)
                      |++||+.++....+.  ++...|                 .+++|+|||+.|++++.|.                     
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            999999887765532  222222                 5899999999999988652                     


Q ss_pred             -------------cEEEEEecCCcee-eeEeeecCcccccCCceeeEEEeecC
Q 012367          414 -------------TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       414 -------------~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                                   .|++||+.+++.. ...+........+...+.++.|+|++
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~  264 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE  264 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC
Confidence                         6778888776531 00111100111234568888898885

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=5.2e-13  Score=125.91  Aligned_cols=141  Identities=14%  Similarity=0.062  Sum_probs=102.9

Q ss_pred             eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeEeEEec-C-CCceEEEEEccCCCCEEEEEeC--CCcEEE--
Q 012367          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--DGKVRI--  376 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~~l~~~~-h-~~~V~~i~fsp~~~~~l~sgs~--Dg~I~i--  376 (465)
                      +..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...|.+++|+| ++++|++++.  ++.++|  
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEE
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEE
Confidence            44578899999999986 566655 88999999998 77766663 3 36889999999 9999999983  344455  


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      |++.++....+..+ ..+..++|+|+|+.|+ +++.++.+++|++.........+..      ....+.++.|+|++.+
T Consensus       115 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          115 LPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH------GEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             EETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC------SSSCEEEEEECTTSSE
T ss_pred             EECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc------CCCccccceECCCCCE
Confidence            55566665444444 3489999999999887 7788999999997643332222221      2356888999988753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.49  E-value=2.7e-13  Score=142.56  Aligned_cols=193  Identities=9%  Similarity=0.057  Sum_probs=131.9

Q ss_pred             hhccCC-CcEEEEEECCCCCEEEEEeC---CCcEEEEecCC--ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe-
Q 012367          217 EIQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTS--VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV-  289 (465)
Q Consensus       217 ~l~~H~-~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  289 (465)
                      .+..|. ..|..++|||| +++++++.   +...+||.+..  ..............       ...+.........+. 
T Consensus        58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~-------~~~~s~dg~~~~~~s~  129 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMR-------ILSGVDTGEAVVFTGA  129 (582)
T ss_dssp             ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBE-------EEEEEECSSCEEEEEE
T ss_pred             eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCce-------eeeeCCCCCeEEEEec
Confidence            344555 68999999999 88888876   56677776543  11111111111100       111111111111111 


Q ss_pred             cCC--ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCC----CeEEEEeCCCCeEeEEecCCCceEEEEEccCCC
Q 012367          290 IPD--EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD  362 (465)
Q Consensus       290 ~~~--~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D----gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~  362 (465)
                      ..+  .+|++.......+..+..  .+++|+|+| +|++++.|    .+|++||+.+++......|...+..++|+| |+
T Consensus       130 ~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG  206 (582)
T 3o4h_A          130 TEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GM  206 (582)
T ss_dssp             CSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TS
T ss_pred             CCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CC
Confidence            111  144554444444444433  789999986 77777777    789999999888776667888999999999 99


Q ss_pred             CEEEEEeCCC--cEEEEeCCCCeEEecccCCCCeEEEE--------EeeCCCEEEEEEcCCcEEEEEe
Q 012367          363 NYFISGSIDG--KVRIWGVCEKRVVDWADVRDVISAIC--------YIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       363 ~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~--------~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      ++|+++..++  .|++||+.+++.....++...+..++        |+|||..+++++.+|++++|++
T Consensus       207 ~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          207 KVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            9999888888  89999999888776666777777777        9999999999999999999999

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.48  E-value=2.1e-12  Score=125.50  Aligned_cols=208  Identities=8%  Similarity=0.000  Sum_probs=132.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC--CCcc-cccCCCe-EEeccCCCCceeEecCCceeeec-CCc
Q 012367          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--GGFG-SNAKEGK-IKFGKKKSSHVPVVIPDEVFQIE-ESP  301 (465)
Q Consensus       227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~  301 (465)
                      .+++++++.++++++.+++|.+||+.++..........  .... .....+. +.+.........+      ++.. .+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~------~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG------IDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE------EETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE------EeCCCCcE
Confidence            46788999999999999999999999887665544332  1111 1111111 1111111111111      2221 222


Q ss_pred             ceeeec-c-----ccceEEEEecCCC-EEEEEeCC------------CeEEEEeCCCC---eEeEEecCCCceEEEEEcc
Q 012367          302 LQELHG-H-----KGDVLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCN---QCLNVFDHHNYVTCVQFNP  359 (465)
Q Consensus       302 ~~~~~g-h-----~~~V~~l~~s~~~-~l~s~s~D------------gtV~lWD~~~~---~~l~~~~h~~~V~~i~fsp  359 (465)
                      +..+.. +     ...+.+++|+|++ +|++++.+            +.|.+||+.++   +.+..+.+...+.+++|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~  157 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  157 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence            333332 2     2347889999986 77777755            89999999884   4455666667899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEecccCC------------------------------------------------
Q 012367          360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVR------------------------------------------------  391 (465)
Q Consensus       360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~------------------------------------------------  391 (465)
                       +++ +++++  +.|.+||+.++++.......                                                
T Consensus       158 -dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  233 (349)
T 1jmx_B          158 -DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  233 (349)
T ss_dssp             -TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             -CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence             888 55544  44999999887765422111                                                


Q ss_pred             ---------------------CCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          392 ---------------------DVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       392 ---------------------~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                                           ..+.+++|+| +|+.++++  ++.|.+||+.+++... .+..       ...+.++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~-~~~~-------~~~~~~~~~s  303 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK-AANL-------DHTYYCVAFD  303 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-EEEC-------SSCCCEEEEC
T ss_pred             eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE-EEcC-------CCCccceEEC
Confidence                                 1345677889 99999988  8899999998876532 2221       1245678888


Q ss_pred             ecCCc
Q 012367          450 ISKNY  454 (465)
Q Consensus       450 p~gs~  454 (465)
                      |+|.+
T Consensus       304 ~dg~~  308 (349)
T 1jmx_B          304 KKGDK  308 (349)
T ss_dssp             SSSSC
T ss_pred             CCCCE
Confidence            88654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.46  E-value=1.4e-11  Score=121.09  Aligned_cols=185  Identities=14%  Similarity=0.179  Sum_probs=120.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCCcee----e-eeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          221 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAA----S-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +...+.+++|+|+|++|+.++ .++.|.+|++.....    . ....                                 
T Consensus       153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~---------------------------------  199 (361)
T 3scy_A          153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK---------------------------------  199 (361)
T ss_dssp             SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE---------------------------------
T ss_pred             CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec---------------------------------
Confidence            344578999999999766555 589999999875321    0 0000                                 


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeE--eEEec----CCCceEEEEEccCCCCEEE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQC--LNVFD----HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~~~--l~~~~----h~~~V~~i~fsp~~~~~l~  366 (465)
                          .........+...+..++|+|++ ++++++ .++.|.+||+.++..  +..+.    +...+..++|+| ++++|+
T Consensus       200 ----~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~  274 (361)
T 3scy_A          200 ----GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLY  274 (361)
T ss_dssp             ----EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEE
T ss_pred             ----ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEE
Confidence                00000111233456789999987 565555 689999999987754  22222    334578999999 999887


Q ss_pred             EEeCC--CcEEEEeCC--CCeE--EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEec--CCceeeeEeeecCccc
Q 012367          367 SGSID--GKVRIWGVC--EKRV--VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLEKVDFHDRKK  437 (465)
Q Consensus       367 sgs~D--g~I~iwd~~--~~~~--~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~--~~~~~~~~~~~~~~~~  437 (465)
                      ++..+  +.|.+|++.  ++..  +........+..++|+|||++|++++ .++.|.+|+++  ++++..  +.    ..
T Consensus       275 v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~--~~----~~  348 (361)
T 3scy_A          275 ASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD--IK----KD  348 (361)
T ss_dssp             EEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE--CS----CC
T ss_pred             EECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee--cc----ee
Confidence            66654  899999985  4443  22222256788999999999998888 57999997665  444422  11    01


Q ss_pred             ccCCceeeEEEe
Q 012367          438 TSGNKITGIQGR  449 (465)
Q Consensus       438 ~~~~~It~~~f~  449 (465)
                      .+...++++.|.
T Consensus       349 ~~~~~p~~v~~~  360 (361)
T 3scy_A          349 IKVDKPVCLKFV  360 (361)
T ss_dssp             EECSSEEEEEEE
T ss_pred             eeCCCCeEEEEc
Confidence            122356777765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.46  E-value=8.7e-13  Score=148.40  Aligned_cols=159  Identities=7%  Similarity=0.026  Sum_probs=135.9

Q ss_pred             hhccCCC-cEEEEEECCCCCEEEEEeCCCcEE-EEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          217 EIQAHKG-CIWTLKFSPDGRYLASGGEDGVVR-IWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       217 ~l~~H~~-~I~~l~fspdg~~LaSgs~Dg~V~-iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+..|.+ .+..++|+ +|+.|++++.++.|. +|++.+..                                       
T Consensus       331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---------------------------------------  370 (1045)
T 1k32_A          331 KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---------------------------------------  370 (1045)
T ss_dssp             ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---------------------------------------
T ss_pred             EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---------------------------------------
Confidence            3567888 89999999 999999999988888 88876532                                       


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg  372 (465)
                             ...+.+|...+..++|+|++ +|++++.++.|++||+.+++..... .|...|.+++|+| ++++|++++.++
T Consensus       371 -------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~  442 (1045)
T 1k32_A          371 -------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLK  442 (1045)
T ss_dssp             -------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEEC
T ss_pred             -------ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCc
Confidence                   12233677889999999986 8889999999999999999988877 6888999999999 999999887754


Q ss_pred             ----------cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          373 ----------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       373 ----------~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                                .|++||+.+++...+..|...+.+++|+|||+.|++++.++...+|+....
T Consensus       443 ~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          443 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             cccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence                      899999999987778888889999999999999999999888888876543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.45  E-value=3.9e-12  Score=125.78  Aligned_cols=188  Identities=11%  Similarity=0.044  Sum_probs=126.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecC-CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      +...+..++|+|+|++|++++.+ .|.+|++. ++.....                                        
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~----------------------------------------   76 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE----------------------------------------   76 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE----------------------------------------
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe----------------------------------------
Confidence            33467889999999999999988 99999986 4322110                                        


Q ss_pred             CcceeeeccccceEEEEecCCCE---EEEEe-------------CCCeEEEEeCC-CCeEeEEec-----CCCceEEEEE
Q 012367          300 SPLQELHGHKGDVLDLAWSNSNY---LLSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQF  357 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~~---l~s~s-------------~DgtV~lWD~~-~~~~l~~~~-----h~~~V~~i~f  357 (465)
                         .....+ +.+.+++|+|++.   ++++.             .++++.+|++. .++....+.     +...+.+++|
T Consensus        77 ---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  152 (365)
T 1jof_A           77 ---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF  152 (365)
T ss_dssp             ---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred             ---eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence               000001 1234578899874   33442             68999999997 465544332     4568999999


Q ss_pred             ccCCCCEEEEEeC-CCcEEEEeCC-CCeEEe---cc--cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec--CCceee
Q 012367          358 NPIDDNYFISGSI-DGKVRIWGVC-EKRVVD---WA--DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS--GNDLKL  427 (465)
Q Consensus       358 sp~~~~~l~sgs~-Dg~I~iwd~~-~~~~~~---~~--~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~--~~~~~~  427 (465)
                      +| ++++++++.. ++.|++||+. ++++..   ..  .+...+..++|+|||+++++++. ++.|.+|++.  ++++..
T Consensus       153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          153 DP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            99 9998887664 6799999998 676532   21  23567999999999999988875 7899999886  344432


Q ss_pred             --eEee-ecCcccccCC------ceeeEE-EeecCCc
Q 012367          428 --EKVD-FHDRKKTSGN------KITGIQ-GRISKNY  454 (465)
Q Consensus       428 --~~~~-~~~~~~~~~~------~It~~~-f~p~gs~  454 (465)
                        ..+. +......+..      .+.++. |+|+|.+
T Consensus       232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             ccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence              1221 1110001111      578899 9999865

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.44  E-value=5.4e-12  Score=136.75  Aligned_cols=197  Identities=6%  Similarity=0.046  Sum_probs=129.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC---------C-
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP---------D-  292 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-  292 (465)
                      .....++|+|+|++|+++  ||+|++||+.++............. .........+...+...+.....         . 
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE-FGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT-CCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhh-hcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            346689999999999997  9999999999887643322221110 00001112222222211111110         0 


Q ss_pred             -ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCce----------------
Q 012367          293 -EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYV----------------  352 (465)
Q Consensus       293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V----------------  352 (465)
                       .++++.......+..|.+.+...+|||+| .|+.+ .|+.|++||+.++...+..  ++...+                
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence             14455555555677788899999999987 56655 5789999999888755432  222222                


Q ss_pred             -EEEEEccCCCCEEEEEeCCC------------------------------------cEEEEeCCC---C---eEEecc-
Q 012367          353 -TCVQFNPIDDNYFISGSIDG------------------------------------KVRIWGVCE---K---RVVDWA-  388 (465)
Q Consensus       353 -~~i~fsp~~~~~l~sgs~Dg------------------------------------~I~iwd~~~---~---~~~~~~-  388 (465)
                       ..+.|+| |+++|+.++.|.                                    .|++||+.+   +   +...+. 
T Consensus       173 ~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          173 YSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence             3489999 999999886432                                    488899988   7   444443 


Q ss_pred             -----cCCCCeEEEEEeeCCCEEEEEEcC----CcEEEEEecCCc
Q 012367          389 -----DVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND  424 (465)
Q Consensus       389 -----~~~~~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~~  424 (465)
                           ++...+..++|+|||+.++.....    ..|.+||+.+++
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                 377789999999999977665442    379999999876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=146.11  Aligned_cols=153  Identities=12%  Similarity=0.134  Sum_probs=112.5

Q ss_pred             cEEEEEECCCCCEEEEEeC---------CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          224 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~---------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .|.+++|||||++||+++.         |+.|++||+.++.....                                   
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-----------------------------------  105 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-----------------------------------  105 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------------------------
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----------------------------------
Confidence            4899999999999999887         79999999987543100                                   


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCce-----------------EE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TC  354 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V-----------------~~  354 (465)
                              ..+   ...+..++|+|+| .|++++ |+.|++||+.++.+.....  +...|                 .+
T Consensus       106 --------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          106 --------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             --------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             --------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence                    001   1347789999987 566654 7899999999887655431  22222                 48


Q ss_pred             EEEccCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeEE---e------cccCC
Q 012367          355 VQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRVV---D------WADVR  391 (465)
Q Consensus       355 i~fsp~~~~~l~sgs~Dg----------------------------------~I~iwd~~~~~~~---~------~~~~~  391 (465)
                      ++|+| |+++|++++.|.                                  .|++||+.++...   .      +.++.
T Consensus       174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            99999 999999988663                                  7889999987642   2      23577


Q ss_pred             CCeEEEEEeeCCCEEEEEEcCC----cEEEEE----ecCCc
Q 012367          392 DVISAICYIPDGKGFIVGSITG----TCHFYK----ASGND  424 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG----~v~iwd----~~~~~  424 (465)
                      ..+.+++|+||++.+++....+    .|.+||    +.+++
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence            7899999999988777754332    478888    65544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.40  E-value=5.3e-12  Score=121.82  Aligned_cols=144  Identities=9%  Similarity=0.090  Sum_probs=114.1

Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-cccc-ce
Q 012367          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV  312 (465)
Q Consensus       235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~-~V  312 (465)
                      ++|++++.++.|.+||+.++....                                             .+. ++.. .+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~---------------------------------------------~~~~~~~~~~~   36 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDK---------------------------------------------VITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE---------------------------------------------EEECTTCTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEE---------------------------------------------EEEcCCCCCCc
Confidence            479999999999999998754322                                             111 1211 36


Q ss_pred             EEEEecCCC-E-EEEEeCCCeEEEEeCCCCeEeEEecCCC------ceEEEEEccCCCCEEEEEe------------CCC
Q 012367          313 LDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG  372 (465)
Q Consensus       313 ~~l~~s~~~-~-l~s~s~DgtV~lWD~~~~~~l~~~~h~~------~V~~i~fsp~~~~~l~sgs------------~Dg  372 (465)
                      ..++|+|++ . +++++.++.|.+||+.+++.+..+....      .+.+++|+| +++++++++            .++
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence            778999986 4 4566678999999999999888776433      678999999 998888886            579


Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .|.+||+.+++..........+.+++|+|+|++|+++  ++.|.+||+.+++..
T Consensus       116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence            9999999998877655556678899999999988888  789999999887653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.39  E-value=1.3e-10  Score=110.10  Aligned_cols=224  Identities=8%  Similarity=0.049  Sum_probs=139.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec---CCcee
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI---PDEVF  295 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  295 (465)
                      .+|-....+|+++++|+++++.+.++.|.+||.... ....................+.+.. ......+..   ...+.
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~-~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVR-NSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEET-TTTEEEEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEc-CCCeEEEEcCCCCCEEE
Confidence            367778999999999999999899999999998743 2222211100000000001111100 111111111   11222


Q ss_pred             ee--cCCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEE
Q 012367          296 QI--EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       296 ~~--~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sg  368 (465)
                      .+  ....+..+. .+...+.++++++++ ++++...++.|.+||.. ++.+..+.   +...+..++++| +++++++.
T Consensus       104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~  181 (286)
T 1q7f_A          104 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISD  181 (286)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred             EECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEE
Confidence            21  223333332 244578899999876 55666678999999964 66666663   445789999999 88888888


Q ss_pred             eCCCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEEcCC-cEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367          369 SIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs~dG-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~  445 (465)
                      ..++.|++||.....+..+..  +...+..++++|+|+++++...++ .|.+|+..+..+  ..+..+.    ....+.+
T Consensus       182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~--~~~~~~~----~~~~~~~  255 (286)
T 1q7f_A          182 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI--SALESKV----KHAQCFD  255 (286)
T ss_dssp             GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE--EEEEESS----CCSCEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE--EEEcccC----CCCccee
Confidence            889999999986554444433  236789999999998888887776 999999754432  2332222    1234667


Q ss_pred             EEEeecC
Q 012367          446 IQGRISK  452 (465)
Q Consensus       446 ~~f~p~g  452 (465)
                      +.+.|+|
T Consensus       256 i~~~~~g  262 (286)
T 1q7f_A          256 VALMDDG  262 (286)
T ss_dssp             EEEETTT
T ss_pred             EEECCCC
Confidence            7777765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.38  E-value=1.2e-11  Score=122.35  Aligned_cols=187  Identities=13%  Similarity=0.091  Sum_probs=131.6

Q ss_pred             hhhccCCCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367          216 QEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (465)
Q Consensus       216 ~~l~~H~~~I~~-----l~fspdg~~LaSgs~-Dg~--V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (465)
                      ..+..|.+....     .+|||||++||.++. +|.  |.+||+.++...                              
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~------------------------------   73 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT------------------------------   73 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE------------------------------
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE------------------------------
Confidence            445566666665     899999999999987 774  777787764321                              


Q ss_pred             EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEE--EccCCCC
Q 012367          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDDN  363 (465)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~--fsp~~~~  363 (465)
                                     ....+|...+..++|+|++ .|+.++.++.|++||+.+++....+. +...+....  ++| ++.
T Consensus        74 ---------------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~  137 (388)
T 3pe7_A           74 ---------------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCT  137 (388)
T ss_dssp             ---------------ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSS
T ss_pred             ---------------EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCC
Confidence                           1222344444467899986 88899999999999999998777665 444454443  478 888


Q ss_pred             EEEEE----------------------eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcC------Cc
Q 012367          364 YFISG----------------------SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GT  414 (465)
Q Consensus       364 ~l~sg----------------------s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~d------G~  414 (465)
                      +++..                      ..+..|.+||+.+++...+..+...+..++|+| ||+.|+.....      ..
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred             eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence            88743                      234679999999998887777888899999999 99998887764      36


Q ss_pred             EEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       415 v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      |.++|+.+.....  +..+.    ....+....|+|+|..
T Consensus       218 l~~~d~~~~~~~~--l~~~~----~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          218 MWLINEDGTNMRK--VKTHA----EGESCTHEFWVPDGSA  251 (388)
T ss_dssp             EEEEETTSCCCEE--SCCCC----TTEEEEEEEECTTSSC
T ss_pred             EEEEeCCCCceEE--eeeCC----CCcccccceECCCCCE
Confidence            7777776654321  11111    1124667788888764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.34  E-value=1e-10  Score=115.48  Aligned_cols=161  Identities=12%  Similarity=0.088  Sum_probs=115.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-CCcEEEEecC-CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          221 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      +...+.+++|+|+|++|+++.. ++.|++|++. ++....                                        
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~----------------------------------------  182 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL----------------------------------------  182 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE----------------------------------------
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE----------------------------------------
Confidence            5567999999999998887764 6899999997 432210                                        


Q ss_pred             CCcceeee--ccccceEEEEecCCC-EEEEEe-CCCeEEEEeCC--CCeEeE---Eec--------CCC------ceEEE
Q 012367          299 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG--CNQCLN---VFD--------HHN------YVTCV  355 (465)
Q Consensus       299 ~~~~~~~~--gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~--~~~~l~---~~~--------h~~------~V~~i  355 (465)
                         +..+.  .|...+..++|+|++ +|++++ .+++|.+|++.  +++...   .+.        |..      .+..+
T Consensus       183 ---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          183 ---VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             ---EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             ---eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence               11111  234568899999987 666665 47899999764  565422   221        121      58899


Q ss_pred             E-EccCCCCEEEEEeCCC------cEEEEeCC-CCeEEe----cccCCCCeEEEEEee---CCCEEEEEEcC-CcEEEEE
Q 012367          356 Q-FNPIDDNYFISGSIDG------KVRIWGVC-EKRVVD----WADVRDVISAICYIP---DGKGFIVGSIT-GTCHFYK  419 (465)
Q Consensus       356 ~-fsp~~~~~l~sgs~Dg------~I~iwd~~-~~~~~~----~~~~~~~V~sv~~sp---dg~~l~sgs~d-G~v~iwd  419 (465)
                      + |+| ++++|++++.+.      .|.+|++. ++++..    ...+...+..++|+|   ||++|++++.+ +.|.+|+
T Consensus       260 ~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          260 CALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            9 999 999887766433      89999996 566543    222455678899999   89999999875 8999999


Q ss_pred             ecCCce
Q 012367          420 ASGNDL  425 (465)
Q Consensus       420 ~~~~~~  425 (465)
                      +....+
T Consensus       339 ~~~~~l  344 (365)
T 1jof_A          339 WKDEFL  344 (365)
T ss_dssp             EETTEE
T ss_pred             EchhhC
Confidence            987744

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=2e-11  Score=121.09  Aligned_cols=183  Identities=5%  Similarity=-0.007  Sum_probs=128.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      +++.+++++...++++|+.|+ +++|++.........  ...                           .     ..+..
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~--~~~---------------------------~-----~~~~~   83 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--DST---------------------------P-----LTFKW   83 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--SSC---------------------------C-----CCCSE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc--ccc---------------------------c-----ccceE
Confidence            689999999999999999986 566997653211000  000                           0     01111


Q ss_pred             eeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          304 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      .. .+.. |..++| .+.+|+++ .++.|++||+.+....... .|...|.++.+.+ .  .++++..||.|.+||+.++
T Consensus        84 ~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           84 EK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             EE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTC
T ss_pred             Ee-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCC
Confidence            12 3556 999999 55677777 8899999999876544444 4677788888766 2  3888899999999999987


Q ss_pred             eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee-eeEeeecCccc---ccCCceeeEEEeecCC
Q 012367          383 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKK---TSGNKITGIQGRISKN  453 (465)
Q Consensus       383 ~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~-~~~~~~~~~~~---~~~~~It~~~f~p~gs  453 (465)
                      ....   +...|++++|+|+|  +++|..||++++|+..+.... ...+.......   .+...+.+++|.+++.
T Consensus       157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             CEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred             cccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence            7654   45689999999999  788999999999999887642 22332111111   1347899998887644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.32  E-value=6.4e-11  Score=126.20  Aligned_cols=210  Identities=11%  Similarity=0.063  Sum_probs=135.7

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeecCCCCcc-cccC--CCeEEec--cCCCC-ce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAK--EGKIKFG--KKKSS-HV  286 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~--~~~~~-~~  286 (465)
                      .+.+.+|...|..++|++++.++++.  +.++...||.+................. ....  .......  ..+.. ..
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            45677899999999999987778887  6789999999643322222111111100 0000  0001011  11111 11


Q ss_pred             eEec-CCceeeec-C----Ccceeeec-----cccceEEEEecCCC-EEEEEeCC----------CeEEEEeCCC-----
Q 012367          287 PVVI-PDEVFQIE-E----SPLQELHG-----HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC-----  339 (465)
Q Consensus       287 ~~~~-~~~~~~~~-~----~~~~~~~g-----h~~~V~~l~~s~~~-~l~s~s~D----------gtV~lWD~~~-----  339 (465)
                      .... ...+|.+. .    .....+..     |...+.+++|+|++ .|++++.|          .+|++||+.+     
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            1111 22344443 1    34445555     67789999999986 78877776          5899999988     


Q ss_pred             -CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC--------cEEEEeCC-CC---eEEeccc-CCCCeEEEEEeeCCC
Q 012367          340 -NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGK  404 (465)
Q Consensus       340 -~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg--------~I~iwd~~-~~---~~~~~~~-~~~~V~sv~~spdg~  404 (465)
                       +...... .+...+..++|+| |+++|+.++.++        .|++||+. ++   ....+.. +...+..++|+|||+
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred             CCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence             6655555 5667888999999 999999887553        79999998 56   5555443 467899999999999


Q ss_pred             EEEEEEcCC--cEEEEEecCCce
Q 012367          405 GFIVGSITG--TCHFYKASGNDL  425 (465)
Q Consensus       405 ~l~sgs~dG--~v~iwd~~~~~~  425 (465)
                      +++++..+|  .|.+||+.+++.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCE
T ss_pred             EEEEECCCCCeEEEEEECCCCce
Confidence            888888888  455555545543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=5.5e-10  Score=108.64  Aligned_cols=219  Identities=13%  Similarity=0.118  Sum_probs=140.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeCC------------------------CcEEEEecCCceeeeeeecCC--CCc-ccccCCC
Q 012367          222 KGCIWTLKFSPDGRYLASGGED------------------------GVVRIWHVTSVAASCKSFTDD--GGF-GSNAKEG  274 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~D------------------------g~V~iWd~~~~~~~~~~~~~~--~~~-~~~~~~~  274 (465)
                      -+.|.+|+++|+|+++++.+.+                        ++|.+||..++..........  ... ......+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999988887                        479999998766543221110  000 0111122


Q ss_pred             eEEeccCCCCceeEecCCceeeecCC--cceee---------eccccceEEEEecC-CC-EEEEEe-CCCeEEEEeCCCC
Q 012367          275 KIKFGKKKSSHVPVVIPDEVFQIEES--PLQEL---------HGHKGDVLDLAWSN-SN-YLLSCS-MDKTVRMWQVGCN  340 (465)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~gh~~~V~~l~~s~-~~-~l~s~s-~DgtV~lWD~~~~  340 (465)
                      .+.+.......+..+.+      ...  .+..+         .++...+..++++| ++ ++++.+ .++.|++|| .++
T Consensus       103 ~l~v~d~~~~~v~~~~~------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDP------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             CEEEEETTTTEEEEECT------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             CEEEEECCCCEEEEEeC------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            22222222222222211      122  33333         24555789999998 66 555554 589999999 567


Q ss_pred             eEeEEecCC-----------CceEEEEEccCC-CCEEEEEeCCCcEEEEeCCCCeEEec---ccCCCCeEEEEEee----
Q 012367          341 QCLNVFDHH-----------NYVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDW---ADVRDVISAICYIP----  401 (465)
Q Consensus       341 ~~l~~~~h~-----------~~V~~i~fsp~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~V~sv~~sp----  401 (465)
                      ..+..+...           .....|+++| + ++++++...++.|++||..+++.+..   ..+...+.+++|+|    
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence            777777421           2489999999 6 88888888899999999997776653   34566789999999    


Q ss_pred             --CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          402 --DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       402 --dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                        +|+..++...++.|++|++.++++.. .+..   .........++.++|+|
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~-~~~~---~~~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMNFSSGEIID-VFKP---VRKHFDMPHDIVASEDG  303 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEETTTCCEEE-EECC---SSSCCSSEEEEEECTTS
T ss_pred             EeCCCEEeccCCCcEEEEEEcCCCeEEE-EEcC---CCCccCCeeEEEECCCC
Confidence              33333333345689999998876533 2211   12234668899998886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.29  E-value=7.5e-11  Score=116.65  Aligned_cols=166  Identities=9%  Similarity=0.018  Sum_probs=116.5

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      +...+|...+..+.|+|||++|+.++.++.|.+||+.++......                                   
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-----------------------------------  118 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-----------------------------------  118 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-----------------------------------
Confidence            344566666667889999999999999999999999876432211                                   


Q ss_pred             eecCCcceeeeccccceEEEE--ecCCC-EEEE----------------------EeCCCeEEEEeCCCCeEeEEecCCC
Q 012367          296 QIEESPLQELHGHKGDVLDLA--WSNSN-YLLS----------------------CSMDKTVRMWQVGCNQCLNVFDHHN  350 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~--~s~~~-~l~s----------------------~s~DgtV~lWD~~~~~~l~~~~h~~  350 (465)
                                ..+...+....  +++++ +++.                      ...+..|.+||+.+++......+..
T Consensus       119 ----------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~  188 (388)
T 3pe7_A          119 ----------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ  188 (388)
T ss_dssp             ----------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS
T ss_pred             ----------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc
Confidence                      11222222222  24554 2221                      2345789999999998777777888


Q ss_pred             ceEEEEEccCCCCEEEEEeCC------CcEEEEeCCCCeEEecccCC--CCeEEEEEeeCCCEEEEEEc-CC----cEEE
Q 012367          351 YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVR--DVISAICYIPDGKGFIVGSI-TG----TCHF  417 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~--~~V~sv~~spdg~~l~sgs~-dG----~v~i  417 (465)
                      .+..++|+|.+++.|+..+.+      ..|.++|+.++....+..+.  ..+..++|+|||+.|+..+. ++    .|++
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence            899999999667777766653      37888888877766655554  35888999999998766554 22    3999


Q ss_pred             EEecCCcee
Q 012367          418 YKASGNDLK  426 (465)
Q Consensus       418 wd~~~~~~~  426 (465)
                      ||+.+++..
T Consensus       269 ~d~~~g~~~  277 (388)
T 3pe7_A          269 ADPETLENR  277 (388)
T ss_dssp             ECTTTCCEE
T ss_pred             EecCCCceE
Confidence            999988754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.28  E-value=7.9e-11  Score=125.46  Aligned_cols=159  Identities=11%  Similarity=0.069  Sum_probs=116.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC----------CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          221 HKGCIWTLKFSPDGRYLASGGED----------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~D----------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      |...+..++|||||++||+++.|          ..|.+||+.+....                                 
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------------------  174 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA---------------------------------  174 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT---------------------------------
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc---------------------------------
Confidence            77789999999999999999887          57889988751000                                 


Q ss_pred             CCceeeecCCcceeee-ccccceEEEEecCCC-EEEEEeCC--------CeEEEEeCC-CC---eEeEEec-CCCceEEE
Q 012367          291 PDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMD--------KTVRMWQVG-CN---QCLNVFD-HHNYVTCV  355 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~D--------gtV~lWD~~-~~---~~l~~~~-h~~~V~~i  355 (465)
                             .......+. .+...+..++|+|++ +|+.++.+        ..|++||+. ++   ....... +...+..+
T Consensus       175 -------~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~  247 (662)
T 3azo_A          175 -------DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA  247 (662)
T ss_dssp             -------CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred             -------cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence                   000112222 344677788999987 67766654        479999998 57   4444444 46789999


Q ss_pred             EEccCCCCEEEEEeCCC--cEEEEeCCCCeEEecccCCCC---------eEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          356 QFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWADVRDV---------ISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~---------V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      .|+| ++++++++..++  .|.+||+.+++...+..+...         +.+++|+|+++++++++. |.++||.++
T Consensus       248 ~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          248 EWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             EECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             EECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            9999 888888888888  677777767776665443322         567899999999999999 999999554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.28  E-value=5.3e-10  Score=105.92  Aligned_cols=153  Identities=12%  Similarity=0.118  Sum_probs=114.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +...+.+|+++|+|+++++...++.|.+|+.... ..                                           
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~-------------------------------------------  154 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL-------------------------------------------  154 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE-------------------------------------------
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE-------------------------------------------
Confidence            4456899999999998888888899999996531 11                                           


Q ss_pred             cceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecC---CCceEEEEEccCCCCEEEEEeCCC-c
Q 012367          301 PLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDG-K  373 (465)
Q Consensus       301 ~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h---~~~V~~i~fsp~~~~~l~sgs~Dg-~  373 (465)
                        ..+  .++...+.++++++++ ++++.+.++.|++||.. +..+..+..   ...+..++++| +++++++...++ .
T Consensus       155 --~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          155 --HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFN  230 (286)
T ss_dssp             --EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCE
T ss_pred             --EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEE
Confidence              111  1234567899999987 45555678999999984 566666643   25789999999 899999888776 9


Q ss_pred             EEEEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          374 VRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       374 I~iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      |.+||.....+..+..+  ...+.+++++|+|+.+++ +.+++|++|++..
T Consensus       231 i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          231 LTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            99999655444444333  234789999999986666 6799999999754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.28  E-value=1.8e-10  Score=113.90  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=67.2

Q ss_pred             EEEccCCCCEEEEEeC-----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          355 VQFNPIDDNYFISGSI-----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       355 i~fsp~~~~~l~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      ++|+| +++.++++..           .+.|.+||+.+++++....... +.+++|+|||++|++++. +.|.+||+.++
T Consensus       259 ~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            67888 7666655432           3489999999999887544444 999999999999999887 99999999998


Q ss_pred             ceeee-EeeecCcccccCCceeeEEEeecCC
Q 012367          424 DLKLE-KVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       424 ~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +++.. .+.      ..+..-.++.++|+|.
T Consensus       336 ~l~~~~~i~------~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIE------GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEET------TSCSSEEEEEECCCSC
T ss_pred             cceeeEEec------cCCCCcEEEEecCCCC
Confidence            44433 221      1235667889999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.23  E-value=9.2e-10  Score=104.97  Aligned_cols=184  Identities=10%  Similarity=0.008  Sum_probs=129.0

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..+.                                        
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------------------------------------   60 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------------------------------------   60 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence            34445666788999999998 8888889999999998763                                        


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sg  368 (465)
                             ...+..+...+.++++++++ ++++...++.|.+||..+++......     ....+..++++| +++++++.
T Consensus        61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd  132 (296)
T 3e5z_A           61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD  132 (296)
T ss_dssp             -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred             -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence                   12222345678899999987 44455556899999998887654432     123567899999 99998873


Q ss_pred             ----e-------------CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec-CCce-eeeE
Q 012367          369 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK  429 (465)
Q Consensus       369 ----s-------------~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~-~~~~-~~~~  429 (465)
                          .             ..+.|..++.. +++.....+...+..++|+|+|+.+++.+.++.|.+|++. ++.+ ....
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~  211 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV  211 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence                2             13456666665 6665566666778999999999999777778999999997 4444 2222


Q ss_pred             eeecCcccccCCceeeEEEeecCC
Q 012367          430 VDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       430 ~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      .. ..    ....+.++.+.++|.
T Consensus       212 ~~-~~----~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          212 HF-TV----EPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EE-CC----SSSCCCSEEEBTTSC
T ss_pred             Ee-eC----CCCCCCeEEECCCCC
Confidence            21 11    223456677766653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=1.5e-09  Score=105.08  Aligned_cols=161  Identities=12%  Similarity=0.079  Sum_probs=118.0

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      ..+.+|...+.+++|+|+|++++++..++.|.+||..++....                                     
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-------------------------------------   80 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-------------------------------------   80 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-------------------------------------
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-------------------------------------
Confidence            4455677778999999999988889999999999987643211                                     


Q ss_pred             eecCCcceeeeccccceEEEEecCCCE-EEEEeCC----CeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~D----gtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~s  367 (465)
                              ....+...+.++++++++. ++++..+    +.|.+||..++.....+.   +...+.+++++| +++++++
T Consensus        81 --------~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~  151 (333)
T 2dg1_A           81 --------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT  151 (333)
T ss_dssp             --------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred             --------EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence                    1113446789999999874 4555555    589999998876553432   445799999999 8888887


Q ss_pred             EeC------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecC
Q 012367          368 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG  422 (465)
Q Consensus       368 gs~------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~  422 (465)
                      ...      .+.|..||..++++..+......+..++|+|+|+.|+++ +.++.|.+|++.+
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            654      356777777666655544444568899999999866554 4578999999964

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=2.8e-10  Score=112.86  Aligned_cols=135  Identities=7%  Similarity=0.047  Sum_probs=106.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .+.+ |+.|+|  ++++|+++ .++.|++||+.+...                                           
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~-------------------------------------------  118 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE-------------------------------------------  118 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC-------------------------------------------
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc-------------------------------------------
Confidence            4666 999999  99999999 889999999986421                                           


Q ss_pred             CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                        ......|...|.++.+.+.+ +++++.||+|.+||+.++....   +...|+|++|+| +|  ++.|..||++++|+.
T Consensus       119 --~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          119 --FRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             --EEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred             --cCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence              11223455567777776544 8889999999999999887653   456899999999 77  678999999999998


Q ss_pred             CCCeE--E-ec------c---cCCCCeEEEEEeeCCCEEEEEE
Q 012367          380 CEKRV--V-DW------A---DVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       380 ~~~~~--~-~~------~---~~~~~V~sv~~spdg~~l~sgs  410 (465)
                      .++.+  . .+      .   +|...|.+|+|.+++.++++=+
T Consensus       190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            88774  2 22      2   3778899999999999888744

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.15  E-value=9.7e-10  Score=108.56  Aligned_cols=195  Identities=10%  Similarity=-0.047  Sum_probs=118.4

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEe----------------ccCCCCceeE-
Q 012367          226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF----------------GKKKSSHVPV-  288 (465)
Q Consensus       226 ~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-  288 (465)
                      ..+.|+|+|++||.++.++.|.+|++.++...............   ...+.+                .......... 
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~  160 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGY---GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE  160 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE---EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCC---CCEEEeccCCccccccccccccCCCCcceeeee
Confidence            34789999999999999999999999876544333222110000   000000                0000000000 


Q ss_pred             ----ecCCce--eeecCCcceeeeccccceEEEEecC-CC-EEEEEeCC------CeEEEEeCCCCeEeEEecC--CCce
Q 012367          289 ----VIPDEV--FQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMD------KTVRMWQVGCNQCLNVFDH--HNYV  352 (465)
Q Consensus       289 ----~~~~~~--~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~l~s~s~D------gtV~lWD~~~~~~l~~~~h--~~~V  352 (465)
                          .....+  +++.......+..+...+..+.|+| ++ .|+.++.+      ..|.+||+..+.......+  ...+
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC  240 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred             eccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence                000111  2222333344445677889999999 55 56655543      4688999876654333333  2258


Q ss_pred             EEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEE----------------
Q 012367          353 TCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGS----------------  410 (465)
Q Consensus       353 ~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs----------------  410 (465)
                      ..++|+| ++++|+.++.+     +.|++||+.+++...+..... .. +.|+| ||+.+++++                
T Consensus       241 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          241 THEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             EEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             cceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence            8899999 88877776554     449999999887655433322 33 89999 999888765                


Q ss_pred             cCCcEEEEEecCCcee
Q 012367          411 ITGTCHFYKASGNDLK  426 (465)
Q Consensus       411 ~dG~v~iwd~~~~~~~  426 (465)
                      .++.|++||+.+++..
T Consensus       318 ~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             CCCEEEEEETTTTBCC
T ss_pred             CCCcEEEEecccCceE
Confidence            2478999999877653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.15  E-value=1.1e-08  Score=99.44  Aligned_cols=201  Identities=10%  Similarity=0.033  Sum_probs=128.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC----cccccCCCeEEeccCCCCceeEe--cCCc
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAKEGKIKFGKKKSSHVPVV--IPDE  293 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~  293 (465)
                      ++-.....|+++|+|+++++...++.|++|+..........+.....    .........+.+...........  ....
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            45567899999999999999999999999998654211111111000    00000111122221111111111  1111


Q ss_pred             ee--eecCCcceeee----------ccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEE
Q 012367          294 VF--QIEESPLQELH----------GHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQ  356 (465)
Q Consensus       294 ~~--~~~~~~~~~~~----------gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~  356 (465)
                      +.  ......+..+.          ++......|+++|+ + ++++...++.|++||..+++.+..+.   +...+..++
T Consensus       168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            21  11223333332          23344889999987 5 56677788999999999899988883   556789999


Q ss_pred             EccCCCCEEEEEe-------CCCcEEEEeCCCCeEEecc----cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          357 FNPIDDNYFISGS-------IDGKVRIWGVCEKRVVDWA----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       357 fsp~~~~~l~sgs-------~Dg~I~iwd~~~~~~~~~~----~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      |+|  +..+++.+       .+..|++||..+++++...    .+...+..|+++|+|..+++...+++|++|++.+
T Consensus       248 ~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          248 YIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            998  33333333       3458999999999887753    5667799999999998888888899999999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.14  E-value=2.1e-09  Score=115.81  Aligned_cols=157  Identities=12%  Similarity=0.154  Sum_probs=114.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg-----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +|...+..++|||||++||.++.++     .|++||+.++.....                                   
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------------------------------  166 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------------------------------  166 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence            5666799999999999998776544     899999987643211                                   


Q ss_pred             eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCe----------------EEEEeCCCCeE--eEEec---CCCce
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQC--LNVFD---HHNYV  352 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt----------------V~lWD~~~~~~--l~~~~---h~~~V  352 (465)
                               .+  ....+..++|+|++ .|+.++.++.                |++|++.+++.  ...+.   |...+
T Consensus       167 ---------~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~  235 (710)
T 2xdw_A          167 ---------VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (710)
T ss_dssp             ---------EE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             ---------cc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence                     01  11225678999986 7887777766                99999988762  22332   45578


Q ss_pred             EEEEEccCCCCEEEEEeC-----CCcEEEEeCCC------C--eEEecccCCCCeEEEEEeeCCCEEEEEEcC----CcE
Q 012367          353 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTC  415 (465)
Q Consensus       353 ~~i~fsp~~~~~l~sgs~-----Dg~I~iwd~~~------~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~d----G~v  415 (465)
                      ..+.|+| ++++|+.++.     +..|++||+.+      +  ....+..+...+.. .|+|+|+.|+..+..    +.|
T Consensus       236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred             EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence            8999999 9999888765     56899999976      4  45556666666655 589999988877653    368


Q ss_pred             EEEEecCCc
Q 012367          416 HFYKASGND  424 (465)
Q Consensus       416 ~iwd~~~~~  424 (465)
                      .+||+.+..
T Consensus       314 ~~~d~~~~~  322 (710)
T 2xdw_A          314 INIDFTDPE  322 (710)
T ss_dssp             EEEETTSCC
T ss_pred             EEEeCCCCC
Confidence            999988764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.12  E-value=1.9e-08  Score=95.69  Aligned_cols=204  Identities=12%  Similarity=0.043  Sum_probs=127.2

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC------cccccCCCeEEeccCCCCc------
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG------FGSNAKEGKIKFGKKKSSH------  285 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------  285 (465)
                      +..+.+.+.+|+|+|+|+++++...++.|.+||..++............      .......+.+.+.......      
T Consensus        64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred             EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence            3456778999999999998888877899999999766543221110000      0011112222221000000      


Q ss_pred             ---eeEecCCceeeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC-CCeE---eEEe-cCCCceEEE
Q 012367          286 ---VPVVIPDEVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQC---LNVF-DHHNYVTCV  355 (465)
Q Consensus       286 ---~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~-~~~~---l~~~-~h~~~V~~i  355 (465)
                         ........++.+.. ..+..+..+...+..++|+|++ .|++.+.++.|.+||+. ++..   ...+ .+...+.++
T Consensus       144 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i  223 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL  223 (296)
T ss_dssp             SCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred             ccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence               00000123444432 3344455666778899999986 55777788999999986 5544   3333 244567789


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEE-eeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY-IPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~-spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      ++.+ +++++++.  ++.|.+||.....+..+..+.. +++++| .|+++.|++++.+| +.-++..+.+++
T Consensus       224 ~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          224 RVDA-GGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEBT-TSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             EECC-CCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            9999 88877766  7899999987444444555555 999999 58999999988764 344555555543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.10  E-value=1.4e-10  Score=114.61  Aligned_cols=182  Identities=9%  Similarity=0.067  Sum_probs=120.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          221 HKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      |...+..++|||+|++||.++..   ..|.+||+.++.....                                      
T Consensus        34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l--------------------------------------   75 (396)
T 3c5m_A           34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL--------------------------------------   75 (396)
T ss_dssp             ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC--------------------------------------
T ss_pred             cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe--------------------------------------
Confidence            33447788999999998877553   3677778776432110                                      


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEE-------------------EE
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQ  356 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~-------------------i~  356 (465)
                             ..++......+.|+|++ .|+.++.++.|++||+.+++....+. +......                   +.
T Consensus        76 -------~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  148 (396)
T 3c5m_A           76 -------TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRD  148 (396)
T ss_dssp             -------CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             -------ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccc
Confidence                   01111122236789986 78889999999999999888766654 3333323                   34


Q ss_pred             EccCCCCEEEEE-----eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcC------CcEEEEEecCCc
Q 012367          357 FNPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGND  424 (465)
Q Consensus       357 fsp~~~~~l~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~d------G~v~iwd~~~~~  424 (465)
                      |+| ++++++.+     ..+..|.+||+.+++......+...+..+.|+| +|+.|+..+.+      ..|.+|++.+++
T Consensus       149 ~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (396)
T 3c5m_A          149 WQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN  227 (396)
T ss_dssp             CCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred             cCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence            567 66665543     356789999999988777667778899999999 88877776654      357888876654


Q ss_pred             eeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          425 LKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ...  +..+.    ....+..+.|+|+|.+
T Consensus       228 ~~~--l~~~~----~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          228 VRK--IKEHA----EGESCTHEFWIPDGSA  251 (396)
T ss_dssp             CEE--SSCCC----TTEEEEEEEECTTSSC
T ss_pred             eeE--eeccC----CCccccceEECCCCCE
Confidence            321  11110    1234677888888765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.06  E-value=1.9e-08  Score=95.43  Aligned_cols=208  Identities=11%  Similarity=0.076  Sum_probs=135.8

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeeecCCC---CcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecc-
Q 012367          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG---GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH-  308 (465)
Q Consensus       233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-  308 (465)
                      .+++|++++.|+.|.+||..+++..........   ........+.+.+.  .......      ++...+.+..+..+ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~------~d~~G~~~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKM------ITRDGRELWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEE------ECTTSCEEEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEE------ECCCCCEEEEEcCCC
Confidence            457999999999999999989888877665431   11111222222221  1111111      12223444555543 


Q ss_pred             ccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEEecC-------CCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          309 KGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~~~h-------~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      ...+.++.+.+++ .+++.+. ++.|..+|. +++.+..+..       ......+++.+ +++++++...++.|..||.
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECC
Confidence            3467888888876 6666666 778888886 6887777641       12345667888 9999999999999999999


Q ss_pred             CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      . ++.+........+.++...++|+.+++++.+++|..+|..++++... +............+++++..++|
T Consensus       154 ~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~-~~~~~~~~~~l~~~~~~~~~~~G  224 (276)
T 3no2_A          154 N-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR-VNANDIEGVQLFFVAQLFPLQNG  224 (276)
T ss_dssp             T-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE-EEGGGSBSCCCSEEEEEEECTTS
T ss_pred             C-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE-ecCCCCCCccccccccceEcCCC
Confidence            8 77766444445677888899999999999899999999997777443 21111000122446666666554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.05  E-value=1.6e-09  Score=117.31  Aligned_cols=141  Identities=6%  Similarity=0.115  Sum_probs=105.4

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCc-----eEEEEEccCCCCEEEEEeCC---------CcEE
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-----VTCVQFNPIDDNYFISGSID---------GKVR  375 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~-----V~~i~fsp~~~~~l~sgs~D---------g~I~  375 (465)
                      ...++.|+|++.++..+ |++|++||+.++++...+. |...     ...++|+| |+++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEE
Confidence            45578999998555445 9999999999999887774 3322     24478999 99999998876         5667


Q ss_pred             EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc--cc-----------CCc
Q 012367          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--TS-----------GNK  442 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~--~~-----------~~~  442 (465)
                      +||+.++++..+..+...+..++|+|||+.|+.+ .++.|++|++.++...  ++...+...  ..           ...
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~--~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY--RITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE--ECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE--EEcCCCCccceecCcccccccchhcCC
Confidence            9999999988888888899999999999999888 5789999999887643  222222110  00           122


Q ss_pred             eeeEEEeecCCccc
Q 012367          443 ITGIQGRISKNYDN  456 (465)
Q Consensus       443 It~~~f~p~gs~d~  456 (465)
                      ..++.|+|+|.+--
T Consensus       173 ~~~~~wSpDg~~la  186 (740)
T 4a5s_A          173 YSALWWSPNGTFLA  186 (740)
T ss_dssp             SBCEEECTTSSEEE
T ss_pred             CcceEECCCCCEEE
Confidence            34688999998643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.04  E-value=8.4e-09  Score=110.80  Aligned_cols=193  Identities=12%  Similarity=0.051  Sum_probs=118.6

Q ss_pred             ccCCCcEEEEEECCCCCEEE-----EEeCCCcEEEEecCCceee-eeeecCCCCcccccCCCeEEeccCCCCceeEec--
Q 012367          219 QAHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAAS-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI--  290 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~La-----Sgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  290 (465)
                      .+|...+.+++|||||++||     +|+.+.+|++||+.++... ........       .....+...+........  
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~-------~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK-------YATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT-------TCCCEECTTSSEEEEEECCC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc-------ccceEEecCCCEEEEEEecC
Confidence            36777899999999999999     5566679999999987654 11111110       011111111111111111  


Q ss_pred             -----------CCceeee--cCC-----cceeeeccccceEEEEecCCC-EEEEEeCCC----eEEEEeCCCCeEeEEec
Q 012367          291 -----------PDEVFQI--EES-----PLQELHGHKGDVLDLAWSNSN-YLLSCSMDK----TVRMWQVGCNQCLNVFD  347 (465)
Q Consensus       291 -----------~~~~~~~--~~~-----~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg----tV~lWD~~~~~~l~~~~  347 (465)
                                 +..++..  ...     .+.....|...+..+.|+|++ +|+.++.++    .|.+||..++.......
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~  269 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK  269 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence                       1112222  111     222333456688899999986 666666555    67888776666555555


Q ss_pred             CCCceEEEEEccCCCCEEEEEe---CCCcEEEEeCCCCeE---EecccC--CCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          348 HHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRV---VDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs---~Dg~I~iwd~~~~~~---~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      +...+....+ | ++.++++..   .++.|.+||+.++..   ..+..+  ...+..++|+ ++..+++...||..++|.
T Consensus       270 ~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          270 GVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             CSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            6666666667 4 455555544   257899999977642   333333  4568888998 777888889999999887


Q ss_pred             ec
Q 012367          420 AS  421 (465)
Q Consensus       420 ~~  421 (465)
                      +.
T Consensus       347 ~~  348 (695)
T 2bkl_A          347 AT  348 (695)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.03  E-value=2.4e-09  Score=103.65  Aligned_cols=174  Identities=11%  Similarity=0.068  Sum_probs=121.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      ..|++++|++++..++..+.++.++.|.-                                                ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~   37 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA------------------------------------------------EPW   37 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC------------------------------------------------EEE
T ss_pred             cccceeeecCCccceeEEeecccCccccc------------------------------------------------cee
Confidence            44778888888877777777888888821                                                123


Q ss_pred             eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC----CcEEE
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI  376 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D----g~I~i  376 (465)
                      ..+.++...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+    +.|.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence            3444566677899999886 4557788899999999988776655 4667899999999 88888887766    68999


Q ss_pred             EeCCCCeEEec---ccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367          377 WGVCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (465)
Q Consensus       377 wd~~~~~~~~~---~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~  447 (465)
                      ||..++.....   ......+..++++|+|+.+++...      .+.|..|+..+++.....  .      ....+.++.
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~------~~~~~~~i~  188 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--Q------NISVANGIA  188 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--E------EESSEEEEE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--c------CCCcccceE
Confidence            99988765432   234467999999999987776653      245555555544432211  1      012356666


Q ss_pred             EeecCC
Q 012367          448 GRISKN  453 (465)
Q Consensus       448 f~p~gs  453 (465)
                      |+|+|.
T Consensus       189 ~~~dg~  194 (333)
T 2dg1_A          189 LSTDEK  194 (333)
T ss_dssp             ECTTSS
T ss_pred             ECCCCC
Confidence            777654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.97  E-value=1.7e-08  Score=97.92  Aligned_cols=105  Identities=10%  Similarity=0.123  Sum_probs=72.5

Q ss_pred             ceEEEEecCCCEEEEEeCCC-------eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC--------CcEE
Q 012367          311 DVLDLAWSNSNYLLSCSMDK-------TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------GKVR  375 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg-------tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D--------g~I~  375 (465)
                      .+..++|+|++++++++.+.       ...||.+.+++......+ ..+..+  +| ++++|+.++.+        ..|.
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~  247 (347)
T 2gop_A          172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLY  247 (347)
T ss_dssp             TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEE
T ss_pred             CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEE
Confidence            67788999988555665442       334443335655444445 555544  88 89888877754        3688


Q ss_pred             EEeCCCCeEEec-ccCCCCeEE-EEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          376 IWGVCEKRVVDW-ADVRDVISA-ICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       376 iwd~~~~~~~~~-~~~~~~V~s-v~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      +||  +++...+ ..+...+.. +.|+ || .+++++.+|.+++| +.+++
T Consensus       248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred             EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence            888  6665554 345667886 9999 98 88999999999999 88443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.97  E-value=3.2e-08  Score=96.13  Aligned_cols=214  Identities=6%  Similarity=-0.045  Sum_probs=131.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc-CCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA-KEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      .....|.+. +++++++...++.|.+||..+++................ ..+.+.+.........++....     .+.
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-----~~~  117 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-----YEI  117 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-----TEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-----CeE
Confidence            346778774 455566666789999999998877655432111111111 1122222221111111111111     111


Q ss_pred             ceeeeccc-----cceEEEEecCCCEEEEEe--CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---
Q 012367          302 LQELHGHK-----GDVLDLAWSNSNYLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---  371 (465)
Q Consensus       302 ~~~~~gh~-----~~V~~l~~s~~~~l~s~s--~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---  371 (465)
                      ...+....     .....+++ .++.|+.+.  .+++|.+||+.+++.+..+........++++| ++++++++..+   
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEG  195 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTT
T ss_pred             EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccC
Confidence            22222111     14556777 455555554  48999999999999988887666678899999 88887777654   


Q ss_pred             -------CcEEEEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367          372 -------GKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (465)
Q Consensus       372 -------g~I~iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  442 (465)
                             +.|.+||..++++......  ...+..++|+|+++.|+++..  .|.+||+.++++....+ ...    ....
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~----~~~~  268 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF-LEF----RDTK  268 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS-BCC----CSSC
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee-ecC----CCCc
Confidence                   7899999999887753332  347899999999999988755  89999998876531111 000    1356


Q ss_pred             eeeEEEeec
Q 012367          443 ITGIQGRIS  451 (465)
Q Consensus       443 It~~~f~p~  451 (465)
                      ..++.+.|+
T Consensus       269 p~gi~vdp~  277 (328)
T 3dsm_A          269 YYGLTVNPN  277 (328)
T ss_dssp             EEEEEECTT
T ss_pred             eEEEEEcCC
Confidence            677777774

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.97  E-value=1.5e-08  Score=98.49  Aligned_cols=144  Identities=13%  Similarity=0.205  Sum_probs=97.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCC---Cc--EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          223 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~D---g~--V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      ..+..++|||||++||.++.+   +.  |.+|++.++...                                        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~----------------------------------------   98 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK----------------------------------------   98 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE----------------------------------------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE----------------------------------------
Confidence            457889999999999988764   33  666676653221                                        


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeC---------------------------CCeEEEEeCCCCeEeEEecCC
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH  349 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~---------------------------DgtV~lWD~~~~~~l~~~~h~  349 (465)
                            .+..+.. +..++|+|++ .|+.++.                           ...|.+||+.+++.+..+...
T Consensus        99 ------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~  171 (347)
T 2gop_A           99 ------KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP  171 (347)
T ss_dssp             ------EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred             ------EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence                  1111223 8889999986 5666553                           257999999988874444333


Q ss_pred             CceEEEEEccCCCCEEEEEeCCC-------cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC--------Cc
Q 012367          350 NYVTCVQFNPIDDNYFISGSIDG-------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------GT  414 (465)
Q Consensus       350 ~~V~~i~fsp~~~~~l~sgs~Dg-------~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d--------G~  414 (465)
                       .+..++|+| ++ +++++..+.       ...||.+.+++...+..+ ..+..+  +|||+.|+.++.+        +.
T Consensus       172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~  245 (347)
T 2gop_A          172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK  245 (347)
T ss_dssp             -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred             -CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence             888999999 88 888776542       334444336666555544 445544  9999998887754        35


Q ss_pred             EEEEE
Q 012367          415 CHFYK  419 (465)
Q Consensus       415 v~iwd  419 (465)
                      |.+||
T Consensus       246 l~~~d  250 (347)
T 2gop_A          246 LYIYD  250 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            77777

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.96  E-value=1.5e-07  Score=87.79  Aligned_cols=215  Identities=12%  Similarity=0.019  Sum_probs=130.0

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee--cCC
Q 012367          224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI--EES  300 (465)
Q Consensus       224 ~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  300 (465)
                      ...+|+++++|++++ +.+.++.|.+|+..+............      ....+.+...+. .........++.+  ...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~   97 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY------QPQGLAVDGAGT-VYVTDFNNRVVTLAAGSN   97 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC------SCCCEEECTTCC-EEEEETTTEEEEECTTCS
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC------CcceeEECCCCC-EEEEcCCCEEEEEeCCCc
Confidence            678999999999777 557889999999765432211111100      111111111111 1111111222222  222


Q ss_pred             cceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367          301 PLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (465)
Q Consensus       301 ~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw  377 (465)
                      ....+. .....+.++++.+++ ++++...++.|.+|+..+....... .....+.+++++| +++++++...++.|.+|
T Consensus        98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B           98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKL  176 (270)
T ss_dssp             CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEE
T ss_pred             eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEE
Confidence            222222 223578899999876 5555566789999987655433222 2334678999999 88888887778899999


Q ss_pred             eCCCCeEEec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          378 GVCEKRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       378 d~~~~~~~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      |..+...... ......+..++++|+|..+++...++.|.+|+..+.....  ...     .....+.++.+.++|.
T Consensus       177 ~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~-----~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPF-----TGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCC-----CSCSCEEEEEECTTCC
T ss_pred             ecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--ecc-----CCCCCceeEEECCCCC
Confidence            9987765543 2333678999999999777776678899999987654322  111     1235678888888763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.94  E-value=7.9e-07  Score=83.75  Aligned_cols=216  Identities=6%  Similarity=0.082  Sum_probs=134.8

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC-Ccc--cccCCCeEEeccCCCCceeEecCCce
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-GFG--SNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +..+...+.+|+++++|+++++...++.|.+||.. +........... ...  .....+.+.+.....        ..+
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i   80 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA--------NKI   80 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC--------CeE
Confidence            34566789999999999988877778999999987 433222111110 000  001112222221111        122


Q ss_pred             eeecC-Ccceeee--ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEE
Q 012367          295 FQIEE-SPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       295 ~~~~~-~~~~~~~--gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sg  368 (465)
                      +.+.. .....+.  .+...+.++++.+++ ++++...++.|.+||. ++......  .+...+..+++.| +++++++.
T Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~  158 (299)
T 2z2n_A           81 GRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTE  158 (299)
T ss_dssp             EEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEE
T ss_pred             EEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEe
Confidence            22211 1122222  244578899999876 4555556789999999 55544332  2445789999999 88888887


Q ss_pred             eCCCcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          369 SIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      ..++.|.+||. ++++...  ......+.+++++++|+..++...++.|.+||. ++....  +...    .....+.++
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i  230 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIP----TPNARPHAI  230 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEE
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECC----CCCCCceeE
Confidence            77789999999 6665543  334566889999999987666666889999998 555432  2221    123567778


Q ss_pred             EEeecC
Q 012367          447 QGRISK  452 (465)
Q Consensus       447 ~f~p~g  452 (465)
                      .+.++|
T Consensus       231 ~~~~~g  236 (299)
T 2z2n_A          231 TAGAGI  236 (299)
T ss_dssp             EECSTT
T ss_pred             EECCCC
Confidence            777765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.92  E-value=5.2e-08  Score=90.96  Aligned_cols=193  Identities=9%  Similarity=-0.032  Sum_probs=121.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc--ccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF--GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      ...+.+|+++++|+++++.. ++.|.+||..+..............  ......+.+.+....        ...++.+..
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~  136 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG--------NNRVVKLAA  136 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG--------GTEEEEECT
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC--------CCEEEEEEC
Confidence            34577899999999666666 8899999987643321111100000  000111122221111        112222211


Q ss_pred             C-cce--eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          300 S-PLQ--ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       300 ~-~~~--~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                      . ...  ....+...+.++++++++ ++++...++.|.+||.......... .+...+.++++.| +++++++...++.|
T Consensus       137 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v  215 (270)
T 1rwi_B          137 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQV  215 (270)
T ss_dssp             TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCE
T ss_pred             CCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcE
Confidence            1 111  111233467889999876 5555566789999999876654332 2336789999999 88888888788999


Q ss_pred             EEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          375 RIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       375 ~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      .+||..+....... .+...+.+++++|+|+.+++...+++|++|++...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          216 VKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            99999776544432 233678999999999988888889999999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.91  E-value=1.3e-07  Score=91.86  Aligned_cols=194  Identities=11%  Similarity=0.023  Sum_probs=121.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC------CCcccccCCCeEEeccCC-CCceeEecCCce
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD------GGFGSNAKEGKIKFGKKK-SSHVPVVIPDEV  294 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  294 (465)
                      ......|+++++++.+++...++.|.+||..+...........      .........+.+.+.... .....+....  
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~--  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE--  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT--
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC--
Confidence            4568899999999655555489999999999877665443322      111111112222222110 1111111111  


Q ss_pred             eeecCCcceeeeccccceEEEEecCCCEEEEEeC-C----------CeEEEEeCCCCeEeEEecC--CCceEEEEEccCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM-D----------KTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPID  361 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~-D----------gtV~lWD~~~~~~l~~~~h--~~~V~~i~fsp~~  361 (465)
                         ..+.+..+.. ......++++|++.++.++. +          +.|.++|..+++....+..  ...+..++|+| +
T Consensus       161 ---t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d  235 (328)
T 3dsm_A          161 ---TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-T  235 (328)
T ss_dssp             ---TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-T
T ss_pred             ---CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-C
Confidence               1122223322 23346788888875554443 3          6899999999998877753  34789999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEe--ccc-CCCCeEEEEEeeC-CCEEEEE----EcCCcEEEEEecCCce
Q 012367          362 DNYFISGSIDGKVRIWGVCEKRVVD--WAD-VRDVISAICYIPD-GKGFIVG----SITGTCHFYKASGNDL  425 (465)
Q Consensus       362 ~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~-~~~~V~sv~~spd-g~~l~sg----s~dG~v~iwd~~~~~~  425 (465)
                      +++++++..  .|.+||..++++..  +.. .......++++|+ +..+++.    ..+|.|.+||.. +++
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            888877654  89999998887643  222 2467899999995 5555555    568999999998 444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.91  E-value=1.3e-07  Score=102.18  Aligned_cols=223  Identities=12%  Similarity=0.040  Sum_probs=125.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEecCCceeeeeeecCC--CCcccccCCCeEEeccCCCCc-----ee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDD--GGFGSNAKEGKIKFGKKKSSH-----VP  287 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~D-----g~V~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~  287 (465)
                      +|...+..++|||||++||.++.+     ..|++||+.++..........  ........ ..+.+.......     ..
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            455578999999999999887654     469999999876643321111  11111112 223322211110     00


Q ss_pred             EecCCceeee--cCCc---ceeee--ccccceEEEEecCCC-EEEEEeCC-----CeEEEEeCCCC--e-EeEEecCCCc
Q 012367          288 VVIPDEVFQI--EESP---LQELH--GHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCN--Q-CLNVFDHHNY  351 (465)
Q Consensus       288 ~~~~~~~~~~--~~~~---~~~~~--gh~~~V~~l~~s~~~-~l~s~s~D-----gtV~lWD~~~~--~-~l~~~~h~~~  351 (465)
                      ...+..++..  ....   ...+.  .|...+..+.|+|++ +|+..+.+     ..|.+||+.++  . ......+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence            0001112222  1111   11222  233458899999987 66665544     38999999877  4 3333345555


Q ss_pred             eEEEEEccCCCCEEEEEeCC----CcEEEEeCCCC--eEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC-C
Q 012367          352 VTCVQFNPIDDNYFISGSID----GKVRIWGVCEK--RVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-N  423 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~D----g~I~iwd~~~~--~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~-~  423 (465)
                      +....+ | +++.|+..+.+    +.|.+||+.++  ....+. .+...+..++|. ++..+++...+|..+||.+.. +
T Consensus       319 ~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  395 (741)
T 1yr2_A          319 QWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG  395 (741)
T ss_dssp             CEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            555544 7 78877777653    45999999874  444433 344456778887 666788888899888887652 2


Q ss_pred             ceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          424 DLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      + ....+.+.+     ...+.++.++|++
T Consensus       396 ~-~~~~l~~~~-----~~~v~~~~~s~d~  418 (741)
T 1yr2_A          396 K-PAGAVSLPG-----IGSASGLSGRPGD  418 (741)
T ss_dssp             C-EEEECBCSS-----SCEEEEEECCBTC
T ss_pred             C-ceeeccCCC-----CeEEEEeecCCCC
Confidence            2 222333221     2456677777755

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.83  E-value=6.3e-07  Score=89.89  Aligned_cols=222  Identities=13%  Similarity=0.050  Sum_probs=133.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCe-EEeccCCCC-ceeEecCCceeeecCC
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK-IKFGKKKSS-HVPVVIPDEVFQIEES  300 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~  300 (465)
                      ...+.|+|+++|+++++...++.|++||..+....................+. +........ .........     ..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~-----~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKAS-----GW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGG-----TT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCC-----Cc
Confidence            35789999999998888888899999999876654433321111111111111 111111111 111111110     01


Q ss_pred             cceee---ec-cccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEE----e-cCCCce-E-EEEEccCCCCEEEEE
Q 012367          301 PLQEL---HG-HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNV----F-DHHNYV-T-CVQFNPIDDNYFISG  368 (465)
Q Consensus       301 ~~~~~---~g-h~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~----~-~h~~~V-~-~i~fsp~~~~~l~sg  368 (465)
                      ....+   .. +...+.+++++| ++.|+.+..++.|+.||..++.....    . .+...- . .++|+|.++.++++-
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            11122   12 445678899999 67777788889999999987764332    1 122222 3 999999556777777


Q ss_pred             eCCCcEEEEeCCCCeEEecccC---------------CCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeee
Q 012367          369 SIDGKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDF  432 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~---------------~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~  432 (465)
                      ...+.|+.|+.... ...+.++               -.....++++|+|+++++-+ .+++|+.|++.++.+..  +..
T Consensus       286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~--~~g  362 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST--VAG  362 (409)
T ss_dssp             TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE--EEE
T ss_pred             CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE--EeC
Confidence            77889999997654 3333332               24588999999999777777 78999999977665432  222


Q ss_pred             cCcc---------cccCCceeeEEEeecC
Q 012367          433 HDRK---------KTSGNKITGIQGRISK  452 (465)
Q Consensus       433 ~~~~---------~~~~~~It~~~f~p~g  452 (465)
                      +...         ........++.+.++|
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence            1000         0113567888888875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.83  E-value=1.9e-07  Score=91.98  Aligned_cols=87  Identities=7%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             EEecCC-CEEEEEeC-----------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          315 LAWSNS-NYLLSCSM-----------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       315 l~~s~~-~~l~s~s~-----------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      ++++|+ +.++.+..           ..+|.+||+.+++.+..+.... +.+++|+| +++++++++. +.|.+||..++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEEEeCC-CeEEEEECCCC
Confidence            678887 44444322           3589999999999999997555 99999999 9999998886 99999999999


Q ss_pred             --eEEec-ccCCCCeEEEEEeeCCC
Q 012367          383 --RVVDW-ADVRDVISAICYIPDGK  404 (465)
Q Consensus       383 --~~~~~-~~~~~~V~sv~~spdg~  404 (465)
                        +++.. ..+......++++|+|+
T Consensus       336 ~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cceeeEEeccCCCCcEEEEecCCCC
Confidence              88876 57788899999999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.83  E-value=1.3e-07  Score=101.80  Aligned_cols=178  Identities=7%  Similarity=-0.017  Sum_probs=114.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCc----------------EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeE
Q 012367          225 IWTLKFSPDGRYLASGGEDGV----------------VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~----------------V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (465)
                      +..++|+|||+.|+.++.|+.                |.+|++.+.....                              
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------  222 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED------------------------------  222 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC------------------------------
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc------------------------------
Confidence            678999999999999988876                8888876532110                              


Q ss_pred             ecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeC-----CCeEEEEeCCC------Ce-EeEEe-cCCCceEE
Q 012367          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-----DKTVRMWQVGC------NQ-CLNVF-DHHNYVTC  354 (465)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-----DgtV~lWD~~~------~~-~l~~~-~h~~~V~~  354 (465)
                                 ..+.....|...+..+.|+|++ +|+.++.     +..|.+||+.+      +. ....+ .+...+..
T Consensus       223 -----------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (710)
T 2xdw_A          223 -----------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD  291 (710)
T ss_dssp             -----------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred             -----------eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE
Confidence                       0111112355567889999986 5665543     56899999976      42 23344 45555554


Q ss_pred             EEEccCCCCEEEEEeCC----CcEEEEeCCCCe---EEecccCCC--CeEEEEEeeCCCEEEEEEcCCcE--EEEEecCC
Q 012367          355 VQFNPIDDNYFISGSID----GKVRIWGVCEKR---VVDWADVRD--VISAICYIPDGKGFIVGSITGTC--HFYKASGN  423 (465)
Q Consensus       355 i~fsp~~~~~l~sgs~D----g~I~iwd~~~~~---~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v--~iwd~~~~  423 (465)
                       .|+| +++.|+..+..    ..|.+||+.++.   ...+..+..  .+..++|++++.++++...+|..  .+|++.++
T Consensus       292 -~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g  369 (710)
T 2xdw_A          292 -YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG  369 (710)
T ss_dssp             -EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             -EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence             4788 77776665543    369999998763   234444443  68889999888888888889865  45565444


Q ss_pred             ceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          424 DLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +. ...+.++      ...+.++.++|++
T Consensus       370 ~~-~~~l~~~------~~~v~~~~~s~d~  391 (710)
T 2xdw_A          370 AL-LKIFPLE------VGSVVGYSGQKKD  391 (710)
T ss_dssp             CE-EEEECCC------SSEEEEEECCTTC
T ss_pred             CE-EEecCCC------CceEEEEecCCCC
Confidence            42 2233322      2456666666654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.82  E-value=3.4e-07  Score=86.71  Aligned_cols=192  Identities=10%  Similarity=0.032  Sum_probs=123.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-c--ccccCCCeEEeccCC-CCceeEecCCceeeec
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-F--GSNAKEGKIKFGKKK-SSHVPVVIPDEVFQIE  298 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  298 (465)
                      ..+.++.++|+|++|+  +.++.|..||. +++........... .  ......+.+.+.... ......+.+      .
T Consensus        37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~------~  107 (276)
T 3no2_A           37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM------K  107 (276)
T ss_dssp             CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT------T
T ss_pred             CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC------C
Confidence            4688999999999888  45778999998 66666555442111 0  011122222222211 111222211      1


Q ss_pred             CCcceeee------ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC
Q 012367          299 ESPLQELH------GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       299 ~~~~~~~~------gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .+.+..+.      ++......+++.++ +++++.+.++.|..||.. |+.+..+.....+.++.+.+ +++++++++.+
T Consensus       108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~  185 (276)
T 3no2_A          108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDA  185 (276)
T ss_dssp             SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTT
T ss_pred             CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCC
Confidence            22222221      22234445566666 488888899999999998 99999998666777888888 99999999888


Q ss_pred             CcEEEEeCCCCeEEeccc-C------CCCeEEEEEeeCCCEEEEEEcC--------CcEEEEEec-CCce
Q 012367          372 GKVRIWGVCEKRVVDWAD-V------RDVISAICYIPDGKGFIVGSIT--------GTCHFYKAS-GNDL  425 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~-~------~~~V~sv~~spdg~~l~sgs~d--------G~v~iwd~~-~~~~  425 (465)
                      +.|..+|..+++++.... .      -..+..++..++|..+++....        +..+++.+. ++++
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~  255 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV  255 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE
T ss_pred             CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE
Confidence            899999999888765322 1      1237889999999888776421        244678774 4433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.80  E-value=5.2e-07  Score=94.23  Aligned_cols=158  Identities=11%  Similarity=0.102  Sum_probs=116.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecC--CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      ..+..+.|+|||++|++++.|+.|.+||+.  +...                                            
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--------------------------------------------  232 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--------------------------------------------  232 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--------------------------------------------
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--------------------------------------------
Confidence            356799999999999999999999999985  4322                                            


Q ss_pred             cceeeeccccceEEEEec----CCC-EEE-EEeCCCeEEEEeCCCCeEeEEecC-----------CC-ceEEEEEccCCC
Q 012367          301 PLQELHGHKGDVLDLAWS----NSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDH-----------HN-YVTCVQFNPIDD  362 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s----~~~-~l~-s~s~DgtV~lWD~~~~~~l~~~~h-----------~~-~V~~i~fsp~~~  362 (465)
                       +..+... .....++++    |++ +++ +...+++|.++|..+.+.+..+..           .. .+..+.+++...
T Consensus       233 -v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~  310 (567)
T 1qks_A          233 -VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  310 (567)
T ss_dssp             -EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             -eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence             1222221 235688999    576 444 555679999999999998887641           12 678888888445


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeE--EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCcee
Q 012367          363 NYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK  426 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~  426 (465)
                      .++++...+|.|.++|..+...  +...........+.|+|+|++++++. .++.|.++|+.++++.
T Consensus       311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence            5666666779999999976532  22334455677899999999988776 4789999999988753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.80  E-value=5.6e-07  Score=85.74  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=112.6

Q ss_pred             CCCcEEEEEECCCCCEEEE-------EeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          221 HKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaS-------gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      .-....+++|+++|+++++       +..++.|.+|+..++.......                                
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------------------------   63 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--------------------------------   63 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------------------------------
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--------------------------------
Confidence            3345679999999998888       6778999999976643211000                                


Q ss_pred             eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEE-ec-----CCCceEEEEEccCCCCEEE
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~-~~-----h~~~V~~i~fsp~~~~~l~  366 (465)
                               ....++...+.+++++++ +.|+.++....|.+||.. ++.... ..     ....+.++++.| ++++++
T Consensus        64 ---------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v  132 (314)
T 1pjx_A           64 ---------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWI  132 (314)
T ss_dssp             ---------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEE
T ss_pred             ---------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEE
Confidence                     001124456889999998 876666666689999998 765444 32     123588999999 888888


Q ss_pred             EEeCC---------------CcEEEEeCCCCeEEecccCCCCeEEEEEe----eCCCEEEEE-EcCCcEEEEEec-CCce
Q 012367          367 SGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GNDL  425 (465)
Q Consensus       367 sgs~D---------------g~I~iwd~~~~~~~~~~~~~~~V~sv~~s----pdg~~l~sg-s~dG~v~iwd~~-~~~~  425 (465)
                      +...+               +.|..||.. ++......+......++|+    |+|+.|+++ ..++.|.+|++. ++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence            87655               567888876 5555444444567899999    999766655 467899999987 4443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.80  E-value=9.1e-07  Score=84.26  Aligned_cols=198  Identities=9%  Similarity=0.034  Sum_probs=118.4

Q ss_pred             cCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeee-eecCCCCcccccCCCeEEeccCCCCceeEecC------
Q 012367          220 AHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCK-SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP------  291 (465)
Q Consensus       220 ~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  291 (465)
                      ++...+.+++++++ |+++++.. .+.|.+||.. +..... ......  ........+.+...+. .......      
T Consensus        68 ~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~  142 (314)
T 1pjx_A           68 GYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEG--RRMQGCNDCAFDYEGN-LWITAPAGEVAPA  142 (314)
T ss_dssp             TEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTS--CBCBCCCEEEECTTSC-EEEEECBCBCTTS
T ss_pred             CCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCC--ccccCCcCEEECCCCC-EEEEecCcccccc
Confidence            35567999999999 76555544 4468899987 543322 111000  0001111222211111 1111100      


Q ss_pred             ----------CceeeecC-CcceeeeccccceEEEEec----CCC-EE-EEEeCCCeEEEEeCC-CCeE-----eEEec-
Q 012367          292 ----------DEVFQIEE-SPLQELHGHKGDVLDLAWS----NSN-YL-LSCSMDKTVRMWQVG-CNQC-----LNVFD-  347 (465)
Q Consensus       292 ----------~~~~~~~~-~~~~~~~gh~~~V~~l~~s----~~~-~l-~s~s~DgtV~lWD~~-~~~~-----l~~~~-  347 (465)
                                ..++.+.. .....+..+......++|+    +++ .| ++...++.|.+||+. ++..     ...+. 
T Consensus       143 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          143 DYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             CCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             cccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                      12333321 1222233344556789999    886 44 455678999999986 4442     22222 


Q ss_pred             CC-CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCC
Q 012367          348 HH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN  423 (465)
Q Consensus       348 h~-~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~  423 (465)
                      +. ..+..+++++ +++++++...++.|.+||..+++... +..+...+.+++|+|+|+.|++++ .++.|..|++...
T Consensus       223 ~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          223 THEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            22 5688999999 89999988888999999998665443 334457899999999999665555 5688999988754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.79  E-value=6.5e-06  Score=77.35  Aligned_cols=212  Identities=10%  Similarity=0.058  Sum_probs=129.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCCCcc--cccCCCeEEeccCCCCceeEecCCceeee
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFG--SNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +...+.+|+++++|.++++...++.|..|+... ........ ......  .....+.+.+.....        ..++.+
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~  125 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG--------NRIGRI  125 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCC--------ceEEEE
Confidence            446799999999999888877788999999763 22111110 000000  001112222221111        122222


Q ss_pred             cC-Cccee--eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-e-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          298 EE-SPLQE--LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       298 ~~-~~~~~--~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~-~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .. .....  ...+...+.++++.+++ ++++...++.|..||. +++.... . .....+.++++.+ +++++++...+
T Consensus       126 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~  203 (299)
T 2z2n_A          126 TDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIG  203 (299)
T ss_dssp             CTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT
T ss_pred             CCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCC
Confidence            11 11111  12244568899999876 4445556789999999 6665443 2 2445788999999 88888877778


Q ss_pred             CcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          372 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      +.|.+||. ++....+  ......+.+++++++|+..++...++.|..||.. +.+  ..+....    ....+.++.+ 
T Consensus       204 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~--~~~~~~~----~~~~~~~i~~-  274 (299)
T 2z2n_A          204 NKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII--EEYPIQI----KSAEPHGICF-  274 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE--EEEECSS----SSCCEEEEEE-
T ss_pred             ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce--EEEeCCC----CCCccceEEe-
Confidence            89999999 6665442  2345679999999999866665578899999984 432  2332221    2356778877 


Q ss_pred             ecC
Q 012367          450 ISK  452 (465)
Q Consensus       450 p~g  452 (465)
                      ++|
T Consensus       275 ~~g  277 (299)
T 2z2n_A          275 DGE  277 (299)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.74  E-value=7.4e-07  Score=85.28  Aligned_cols=158  Identities=11%  Similarity=0.032  Sum_probs=112.0

Q ss_pred             hhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          217 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .+..+........|+|+|+ +++++..++.|..|+... .                                        
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~----------------------------------------   77 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T----------------------------------------   77 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----------------------------------------
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----------------------------------------
Confidence            3444556678899999998 677777889999998742 1                                        


Q ss_pred             eecCCcceeeeccccceEEEEecCCCEEEEEe-CCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEE--
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS--  367 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s-~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~s--  367 (465)
                            ...+..+...+..+++++++.|+.+. .++.|.+|+.. ++......     ....+..+++.| +++++++  
T Consensus        78 ------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~  149 (305)
T 3dr2_A           78 ------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDP  149 (305)
T ss_dssp             ------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECC
T ss_pred             ------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCc
Confidence                  11222344567889999987666655 45789999986 55433222     123567899999 9998887  


Q ss_pred             --EeC-------------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC------CcEEEEEecCCc
Q 012367          368 --GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGND  424 (465)
Q Consensus       368 --gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d------G~v~iwd~~~~~  424 (465)
                        |..             .+.|..||..++++.... .....+.++|+|||+.|+++...      +.|.+|++.+..
T Consensus       150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             CCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence              332             256888888777655544 44567899999999988887765      789999998765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.74  E-value=3e-06  Score=80.73  Aligned_cols=181  Identities=11%  Similarity=0.092  Sum_probs=115.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +...+.+++++|+|+++++.  ++.|.+||..++.........                                     
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~-------------------------------------   92 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD-------------------------------------   92 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC-------------------------------------
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC-------------------------------------
Confidence            34679999999999965554  567899998765432110000                                     


Q ss_pred             cceeeeccccceEEEEecCCCEEEEEeC----------CCeEEEEeCC-CCeEeEEecCCCceEEEEEccCCCCEE-EEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSNYLLSCSM----------DKTVRMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYF-ISG  368 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~----------DgtV~lWD~~-~~~~l~~~~h~~~V~~i~fsp~~~~~l-~sg  368 (465)
                      .    ......+.+++++|++.++.++.          .....||.+. .++......+-.....++|+| +++.+ ++.
T Consensus        93 ~----~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~  167 (297)
T 3g4e_A           93 N----DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYID  167 (297)
T ss_dssp             T----TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEE
T ss_pred             C----CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEec
Confidence            0    00123577899999874444432          1233444443 244444444555678999999 88765 555


Q ss_pred             eCCCcEEEEeC--CCCeEE------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC
Q 012367          369 SIDGKVRIWGV--CEKRVV------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (465)
Q Consensus       369 s~Dg~I~iwd~--~~~~~~------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~  440 (465)
                      +.++.|.+||+  .++.+.      .+......+..+++.++|++.++....+.|..||..++++.. .+..+      .
T Consensus       168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~-~i~~p------~  240 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ-TVKLP------V  240 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE-EEECS------S
T ss_pred             CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE-EEECC------C
Confidence            66789999987  455432      122344678899999999877777778889999998665532 33332      2


Q ss_pred             CceeeEEEe-ecC
Q 012367          441 NKITGIQGR-ISK  452 (465)
Q Consensus       441 ~~It~~~f~-p~g  452 (465)
                      ..++++.|. |++
T Consensus       241 ~~~t~~~f~g~d~  253 (297)
T 3g4e_A          241 DKTTSCCFGGKNY  253 (297)
T ss_dssp             SBEEEEEEESGGG
T ss_pred             CCceEEEEeCCCC
Confidence            468888887 553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.72  E-value=4.8e-07  Score=97.11  Aligned_cols=202  Identities=11%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEecCCceeeeeeecCC--CCcccccCCCeEEeccCCCC----cee
Q 012367          219 QAHKGCIWTLKFSPDGRYLAS-----GGEDGVVRIWHVTSVAASCKSFTDD--GGFGSNAKEGKIKFGKKKSS----HVP  287 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaS-----gs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~  287 (465)
                      .+|...|..++|||||++||-     |+.+.+|++||+.++..........  ...... ....+.+......    ...
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            357778999999999998883     3444689999999877543322111  111111 1122222211110    000


Q ss_pred             EecCCceeee--cCC-----cceeeec-cccceEEEEecCCC-EE-EEEeC---CCeEEEEeCCCC--eEeEEecCCCce
Q 012367          288 VVIPDEVFQI--EES-----PLQELHG-HKGDVLDLAWSNSN-YL-LSCSM---DKTVRMWQVGCN--QCLNVFDHHNYV  352 (465)
Q Consensus       288 ~~~~~~~~~~--~~~-----~~~~~~g-h~~~V~~l~~s~~~-~l-~s~s~---DgtV~lWD~~~~--~~l~~~~h~~~V  352 (465)
                      ...+..++..  ...     .+..... |...+..+.|+|++ +| ++.+.   +..|.+||+.++  .......+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence            0111223322  111     1222223 44567889999987 44 44433   258999999776  333333455555


Q ss_pred             EEEEEccCCCCEEEEEeCC---CcEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCC
Q 012367          353 TCVQFNPIDDNYFISGSID---GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGN  423 (465)
Q Consensus       353 ~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~  423 (465)
                      ... +++.++.+++....+   +.|..+|+.++..   ..+..+...+.  .|+|+++.|+....++   .|++|++.++
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            554 555244455555444   5799999987643   34555665555  8999999887776644   6888888765


Q ss_pred             c
Q 012367          424 D  424 (465)
Q Consensus       424 ~  424 (465)
                      .
T Consensus       361 ~  361 (693)
T 3iuj_A          361 R  361 (693)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.68  E-value=1.6e-05  Score=74.75  Aligned_cols=214  Identities=7%  Similarity=0.069  Sum_probs=130.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC-CCcc--cccCCCeEEeccCCCCceeEecCCceee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD-GGFG--SNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .....+.+|++.++|+++++...++.|.+|+.. +.......... ....  .....+.+.+.....        ..++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~v~~   87 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA--------NKIGK   87 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC--------CeEEE
Confidence            345678999999999988887788999999987 43332111100 0000  001112222221111        12222


Q ss_pred             ecC-Ccceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-ec-CCCceEEEEEccCCCCEEEEEeC
Q 012367          297 IEE-SPLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       297 ~~~-~~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~~-h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      +.. .....+  ......+.++++.+++ ++++...++.|..||.. ++.... +. ....+.++++.| +++++++...
T Consensus        88 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~  165 (300)
T 2qc5_A           88 LSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ  165 (300)
T ss_dssp             ECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETT
T ss_pred             ECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecC
Confidence            211 111112  2234678899999876 45555557899999988 655432 22 345789999999 8887777776


Q ss_pred             CCcEEEEeCCCCeEEecc--cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367          371 DGKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~--~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      ++.|..||. ++....+.  .....+..++++++|...++....+.|.+|+. ++....  ....    .....+.++.+
T Consensus       166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~  237 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YDIP----TPNARPHAITA  237 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEE
T ss_pred             CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EECC----CCCCCceEEEE
Confidence            789999998 55554432  34457899999999977766666778999998 333322  2111    12345677777


Q ss_pred             eecC
Q 012367          449 RISK  452 (465)
Q Consensus       449 ~p~g  452 (465)
                      .++|
T Consensus       238 d~~g  241 (300)
T 2qc5_A          238 GKNS  241 (300)
T ss_dssp             CSTT
T ss_pred             CCCC
Confidence            7665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.65  E-value=2.8e-06  Score=88.67  Aligned_cols=170  Identities=14%  Similarity=0.056  Sum_probs=121.1

Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecccc
Q 012367          231 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG  310 (465)
Q Consensus       231 spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~  310 (465)
                      .|.+.++++...++.|.++|..+.+...                                             .+. ...
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~---------------------------------------------~i~-~g~  197 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKT---------------------------------------------VLD-TGY  197 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEE---------------------------------------------EEE-CSS
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEE---------------------------------------------EEe-CCC
Confidence            3555678888899999999998754332                                             221 112


Q ss_pred             ceEEEEecCCC-EEEEEeCCCeEEEEeCC--CCeEeEEecCCCceEEEEEc----cCCCCEEEEEeC-CCcEEEEeCCCC
Q 012367          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEK  382 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~--~~~~l~~~~h~~~V~~i~fs----p~~~~~l~sgs~-Dg~I~iwd~~~~  382 (465)
                      .+..+.++|++ ++++++.|+.|.+||+.  +++.+..+........++|+    | +++++++++. ++.|.|+|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCC
Confidence            45588999986 78888999999999996  88888888766678899999    6 8888877665 589999999988


Q ss_pred             eEEeccc-----------C-CCCeEEEEEeeCCCEEEE-EEcCCcEEEEEecCCcee-eeEeeecCcccccCCceeeEEE
Q 012367          383 RVVDWAD-----------V-RDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       383 ~~~~~~~-----------~-~~~V~sv~~spdg~~l~s-gs~dG~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~It~~~f  448 (465)
                      +++....           | ...+.++..++++..+++ ...+|.|.++|....+.. ...+.       ......++.|
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-------~~~~~~d~~~  349 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-------AERFLHDGGL  349 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-------CCSSEEEEEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-------ccccccCceE
Confidence            7765322           1 126788888988765544 445799999998765421 11221       2234556777


Q ss_pred             eecCCc
Q 012367          449 RISKNY  454 (465)
Q Consensus       449 ~p~gs~  454 (465)
                      +|+|.|
T Consensus       350 ~pdgr~  355 (567)
T 1qks_A          350 DGSHRY  355 (567)
T ss_dssp             CTTSCE
T ss_pred             CCCCCE
Confidence            777665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.62  E-value=2.8e-05  Score=72.98  Aligned_cols=213  Identities=8%  Similarity=0.033  Sum_probs=128.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC-Ccc--cccCCCeEEeccCCCCceeEecCCceeee
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-GFG--SNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +...+.+|++.++|+++++...++.|..||.. +........... ...  .....+.+.+.....        ..++.+
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~  130 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG--------DRIGKL  130 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT--------TEEEEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC--------CeEEEE
Confidence            34678999999999988877778899999987 433211111010 000  001112222221111        122222


Q ss_pred             cC-Cccee--eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCC
Q 012367          298 EE-SPLQE--LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       298 ~~-~~~~~--~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      .. ..+..  +......+.++++.+++ ++++...++.|..||. +++.....  .+...+.++++.+ +++++++....
T Consensus       131 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~  208 (300)
T 2qc5_A          131 TADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMG  208 (300)
T ss_dssp             CTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT
T ss_pred             CCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCC
Confidence            11 11111  22234578899998876 4455555789999998 55544322  2345789999999 88888877777


Q ss_pred             CcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367          372 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR  449 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~  449 (465)
                      +.|.+||. ++.....  ......+.+++++++|+..++...++.|..|+.. +...  .+....    ....+.++.+.
T Consensus       209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~--~~~~~~----~~~~~~~i~~~  280 (300)
T 2qc5_A          209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ--EYQLQT----ENAEPHGITFG  280 (300)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE--EEECCS----TTCCCCCEEEC
T ss_pred             CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE--EEECCc----cCCccceeEeC
Confidence            88999998 5554432  2345678999999999866666567899999984 4332  222221    23456777777


Q ss_pred             ecC
Q 012367          450 ISK  452 (465)
Q Consensus       450 p~g  452 (465)
                      ++|
T Consensus       281 ~~g  283 (300)
T 2qc5_A          281 KDG  283 (300)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.61  E-value=1.6e-05  Score=78.55  Aligned_cols=74  Identities=16%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             eEEEEEccCCCCEEEEEeC----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEE
Q 012367          352 VTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYK  419 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd  419 (465)
                      ...+.++| +++.++.+..          .+.|.++|+.+++++...........++|+|||+ .++++. .++.|.+||
T Consensus       269 ~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          269 WQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             eEeEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            33477888 7666665542          3579999999999887666666799999999999 788877 489999999


Q ss_pred             ecCCcee
Q 012367          420 ASGNDLK  426 (465)
Q Consensus       420 ~~~~~~~  426 (465)
                      +.+++..
T Consensus       348 ~~t~~vv  354 (373)
T 2mad_H          348 AGAGDQD  354 (373)
T ss_pred             CCCCCEE
Confidence            9988764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.57  E-value=7.8e-06  Score=77.78  Aligned_cols=181  Identities=10%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             CCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367          221 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       221 H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      +..---+..|+|+ +.++++...++.|..||..+....                                          
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------------------------   48 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------------------------   48 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------------------------
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------------------------
Confidence            3444568889995 456677778899999998764221                                          


Q ss_pred             CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC-----CCceEEEEEccCCCCEEEEEeCC---
Q 012367          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSID---  371 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h-----~~~V~~i~fsp~~~~~l~sgs~D---  371 (465)
                          .+ .+...+.++++++++.|+.+. +..|.+||..+++.......     ...+..+++.| +++++++....   
T Consensus        49 ----~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~  121 (297)
T 3g4e_A           49 ----RV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETA  121 (297)
T ss_dssp             ----EE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSB
T ss_pred             ----EE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccc
Confidence                11 123568889999987566555 56899999988875443322     23588999999 89877765332   


Q ss_pred             ------CcEEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEE-EEcCCcEEEEEec--CCceeeeEeeecCcccccCC
Q 012367          372 ------GKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKAS--GNDLKLEKVDFHDRKKTSGN  441 (465)
Q Consensus       372 ------g~I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~s-gs~dG~v~iwd~~--~~~~~~~~~~~~~~~~~~~~  441 (465)
                            ....||.+. .+............+.++|+||++.|++ .+.++.|.+|++.  ++.+........-  .....
T Consensus       122 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~--~~~~~  199 (297)
T 3g4e_A          122 PAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL--EKEEQ  199 (297)
T ss_dssp             TTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC--CGGGC
T ss_pred             cccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC--CCCCC
Confidence                  223444443 2444444444456789999999987755 4557899999984  4544222111110  00123


Q ss_pred             ceeeEEEeecC
Q 012367          442 KITGIQGRISK  452 (465)
Q Consensus       442 ~It~~~f~p~g  452 (465)
                      ...++.+.++|
T Consensus       200 ~p~g~~~d~~G  210 (297)
T 3g4e_A          200 IPDGMCIDAEG  210 (297)
T ss_dssp             EEEEEEEBTTS
T ss_pred             CCCeeEECCCC
Confidence            45667666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=3.6e-06  Score=81.98  Aligned_cols=187  Identities=10%  Similarity=0.062  Sum_probs=118.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~-----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +|-..+.+|+|+++|+++++-..     ++.|.+||+.++........+.                              
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~------------------------------  113 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP------------------------------  113 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT------------------------------
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh------------------------------
Confidence            57778999999999986665543     5789999998765432221100                              


Q ss_pred             eeecCCcceeeeccccceEEEEecCC-CEE-EEEe---CCCeEEEEeCCCCeEeEEecC-C-------------------
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNS-NYL-LSCS---MDKTVRMWQVGCNQCLNVFDH-H-------------------  349 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l-~s~s---~DgtV~lWD~~~~~~l~~~~h-~-------------------  349 (465)
                            ..   ..+...+.+++++++ +.+ ++.+   .++.|.+||+.+++..+.+.. .                   
T Consensus       114 ------~~---~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~  184 (343)
T 2qe8_A          114 ------PI---TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG  184 (343)
T ss_dssp             ------TT---SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE
T ss_pred             ------hh---cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec
Confidence                  00   012344577888864 544 4544   678999999988876665521 0                   


Q ss_pred             ----------CceEEEEEccCCCCEEEEEeCCC-cEEEEeCC---CCeE--------EecccCCCCeEEEEEeeCCCEEE
Q 012367          350 ----------NYVTCVQFNPIDDNYFISGSIDG-KVRIWGVC---EKRV--------VDWADVRDVISAICYIPDGKGFI  407 (465)
Q Consensus       350 ----------~~V~~i~fsp~~~~~l~sgs~Dg-~I~iwd~~---~~~~--------~~~~~~~~~V~sv~~spdg~~l~  407 (465)
                                ..+..|+|+| ++++|+.+..++ .|..++..   .+.+        +...++......++++++|.+++
T Consensus       185 ~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v  263 (343)
T 2qe8_A          185 QPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYV  263 (343)
T ss_dssp             CTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEE
T ss_pred             cCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEE
Confidence                      2357899999 998888887766 44444421   1110        01113344567899999999999


Q ss_pred             EEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       408 sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +...++.|.+||..++++... ..  .   ......+++.|.+++
T Consensus       264 a~~~~~~V~~~d~~~G~~~~~-~~--~---~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          264 GDLAHSAIGVITSADRAYKLL-VT--D---EKLSWTDSFNFGSDG  302 (343)
T ss_dssp             EEGGGTEEEEEETTTTEEEEE-EE--C---GGGSCEEEEEECTTS
T ss_pred             EccCCCeEEEEECCCCCEEEE-EE--C---CceecCCeeEECCCC
Confidence            888899999999844543221 11  1   013457777777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.52  E-value=1.6e-05  Score=76.85  Aligned_cols=206  Identities=12%  Similarity=0.034  Sum_probs=119.1

Q ss_pred             EEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc--ccCCCeEEeccCCCCceeEecCCceeeec--C
Q 012367          225 IWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAKEGKIKFGKKKSSHVPVVIPDEVFQIE--E  299 (465)
Q Consensus       225 I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  299 (465)
                      .-+..|+|++ .++++...++.|..||..++...... .. .....  ....+.+.+..          ...++.+.  .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~-~~v~~i~~~~dg~l~v~~----------~~gl~~~d~~~  118 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LP-FMGSALAKISDSKQLIAS----------DDGLFLRDTAT  118 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CS-SCEEEEEEEETTEEEEEE----------TTEEEEEETTT
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CC-CcceEEEEeCCCeEEEEE----------CCCEEEEECCC
Confidence            4678899974 46667777899999999876543211 11 11100  01112222211          11222221  1


Q ss_pred             Ccceeeec-----cccceEEEEecCCCEEEEEeC-------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-
Q 012367          300 SPLQELHG-----HKGDVLDLAWSNSNYLLSCSM-------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-  366 (465)
Q Consensus       300 ~~~~~~~g-----h~~~V~~l~~s~~~~l~s~s~-------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-  366 (465)
                      ..+..+..     ....+.+++++|++.++.++.       .+.|..++  +++......+......++|+| +++.++ 
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv  195 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYF  195 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEE
Confidence            22222211     124688999999874444432       24566666  565544334445678999999 887664 


Q ss_pred             EEeCCCcEEEEeCC--CC-e-----EE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc
Q 012367          367 SGSIDGKVRIWGVC--EK-R-----VV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (465)
Q Consensus       367 sgs~Dg~I~iwd~~--~~-~-----~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~  437 (465)
                      +.+.++.|.+||+.  ++ .     .. .+......+..+++.++|.+.++...++.|..|+..+ +. ...+...    
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g-~~-~~~i~~~----  269 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-NH-IARYEVP----  269 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-CE-EEEEECS----
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC-CE-EEEEECC----
Confidence            44557899999985  55 3     12 2223345678899999998777766678999999843 32 2233322    


Q ss_pred             ccCCceeeEEEe-ecCC
Q 012367          438 TSGNKITGIQGR-ISKN  453 (465)
Q Consensus       438 ~~~~~It~~~f~-p~gs  453 (465)
                        ...++++.|. +++.
T Consensus       270 --~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          270 --GKQTTCPAFIGPDAS  284 (326)
T ss_dssp             --CSBEEEEEEESTTSC
T ss_pred             --CCCcEEEEEecCCCC
Confidence              2468888887 5543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.51  E-value=2.2e-05  Score=75.88  Aligned_cols=187  Identities=7%  Similarity=0.059  Sum_probs=108.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec------CCcee
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI------PDEVF  295 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  295 (465)
                      ...|.+++|+|+|+++++. .++ |.+||..++............  .......+.+...+........      ...++
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~~~~~~~~--~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLHAELESDL--PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEEECSSTTC--TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEEeeCCCCC--CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence            3579999999999877764 444 999998776543221111000  0000011111111110000000      12233


Q ss_pred             eecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCC--CC-e-----EeEEec-CCCceEEEEEccCCCCE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CN-Q-----CLNVFD-HHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~--~~-~-----~l~~~~-h~~~V~~i~fsp~~~~~  364 (465)
                      .+....+..+..+......++|+|++ .+ ++.+.++.|.+||+.  ++ .     ....+. ....+..+++.+ ++++
T Consensus       165 ~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~l  243 (326)
T 2ghs_A          165 HVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHI  243 (326)
T ss_dssp             EEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCE
T ss_pred             EEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCE
Confidence            33322222232333456789999986 44 455667899999985  55 3     222232 345678899999 8888


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEe-eCCCEEEEEEcCC
Q 012367          365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITG  413 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~s-pdg~~l~sgs~dG  413 (465)
                      .++...++.|.+||.....+..+......+++++|. |+++.|++++..+
T Consensus       244 wva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          244 WNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            888777789999998433333344455579999998 8988877766543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.50  E-value=6.3e-06  Score=80.28  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=107.5

Q ss_pred             CcEEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          223 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      .....|+++|+|+++++..  .++.++||.+.++...  .+...                                    
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~------------------------------------   58 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQ------------------------------------   58 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCC------------------------------------
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCc------------------------------------
Confidence            6789999999999988864  2344677766432211  00000                                    


Q ss_pred             cceeeeccccceEEEEecCCCEEEEEeC------CCeEEEEeCCCCeEeEEecC-------CCceEEEEEccCCCCEEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~------DgtV~lWD~~~~~~l~~~~h-------~~~V~~i~fsp~~~~~l~s  367 (465)
                       .....+|...+.++++++++.|+.+..      +..|.+||+.+++.++.+..       ...+..++++|.++..+++
T Consensus        59 -~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           59 -SGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             -CSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred             -ccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence             001124667889999999886555443      57899999999998777642       2356899999834555566


Q ss_pred             Ee---CCCcEEEEeCCCCeEEecccC------------------------------CCCeEEEEEeeCCCEEEEEEcCCc
Q 012367          368 GS---IDGKVRIWGVCEKRVVDWADV------------------------------RDVISAICYIPDGKGFIVGSITGT  414 (465)
Q Consensus       368 gs---~Dg~I~iwd~~~~~~~~~~~~------------------------------~~~V~sv~~spdg~~l~sgs~dG~  414 (465)
                      ..   .++.|.+||+.+++.......                              ...+..++|+|||+.|+++...+.
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence            65   678999999988776553211                              123688999999999999887764


Q ss_pred             EEEEEec
Q 012367          415 CHFYKAS  421 (465)
Q Consensus       415 v~iwd~~  421 (465)
                       ++|.+.
T Consensus       218 -~l~~~~  223 (343)
T 2qe8_A          218 -SMYRIK  223 (343)
T ss_dssp             -EEEEEE
T ss_pred             -eEEEEE
Confidence             455543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.48  E-value=1e-06  Score=94.48  Aligned_cols=159  Identities=11%  Similarity=-0.059  Sum_probs=105.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCC----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDG----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+|...+..+.|||||++|+.++.++    .|.+|+..++                                        
T Consensus       223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~----------------------------------------  262 (695)
T 2bkl_A          223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK----------------------------------------  262 (695)
T ss_dssp             CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS----------------------------------------
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC----------------------------------------
Confidence            45667899999999999998887666    4445443221                                        


Q ss_pred             eeecCCcceeeeccccceEEEEecCCCEEEEEeC----CCeEEEEeCCCCeE---eEEecC--CCceEEEEEccCCCCEE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM----DKTVRMWQVGCNQC---LNVFDH--HNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~----DgtV~lWD~~~~~~---l~~~~h--~~~V~~i~fsp~~~~~l  365 (465)
                            ....+..+...+....|++++ ++..+.    ++.|.+||+.++..   ...+.+  ...+..++|+  ++.++
T Consensus       263 ------~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv  333 (695)
T 2bkl_A          263 ------DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLS  333 (695)
T ss_dssp             ------SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEE
T ss_pred             ------ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEE
Confidence                  122333344455555565445 444443    58899999987653   344443  4467888887  57788


Q ss_pred             EEEeCCCcEEEEeCC--CCeEEecccC-CCCeEEEEEeeCCCEEEEEE----cCCcEEEEEecCCcee
Q 012367          366 ISGSIDGKVRIWGVC--EKRVVDWADV-RDVISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLK  426 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~--~~~~~~~~~~-~~~V~sv~~spdg~~l~sgs----~dG~v~iwd~~~~~~~  426 (465)
                      ++...|+..+||.+.  .+....+..+ ...|..++++|+++.++...    ..++|++||+.+++..
T Consensus       334 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          334 LEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            999999988888654  3333334333 56788889999998776433    3478999999887654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.45  E-value=6.8e-06  Score=81.11  Aligned_cols=196  Identities=13%  Similarity=0.025  Sum_probs=115.8

Q ss_pred             EEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecC--CceeeecC
Q 012367          225 IWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIP--DEVFQIEE  299 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  299 (465)
                      -..+.|+|||++|+.+..  ++.|.|+|+.+.+.......+..... ............. +....+...  +.+.....
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~D-G~~~~v~~~~~g~v~~~~~  217 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD-GSLAKVAFGTEGTPEITHT  217 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT-SCEEEEECCSSSCCEEEEC
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCC-CCEEEEECCCCCeEEEeec
Confidence            346899999999888864  68999999999887766543221000 0000000111111 111111111  11100000


Q ss_pred             CcceeeeccccceE-EEEec-CCCEEEEEeCCCeEEEEeCCCCe--EeEEec-----------CCCceEEEEEccCCCCE
Q 012367          300 SPLQELHGHKGDVL-DLAWS-NSNYLLSCSMDKTVRMWQVGCNQ--CLNVFD-----------HHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       300 ~~~~~~~gh~~~V~-~l~~s-~~~~l~s~s~DgtV~lWD~~~~~--~l~~~~-----------h~~~V~~i~fsp~~~~~  364 (465)
                         ..+..-...+. ...|. +++.++..+.+|+|.+.|+.++.  .+..+.           .......++++| +++.
T Consensus       218 ---~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~  293 (386)
T 3sjl_D          218 ---EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDR  293 (386)
T ss_dssp             ---CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTE
T ss_pred             ---ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCe
Confidence               00000111111 13553 57766667778999999997654  332221           122334577788 6666


Q ss_pred             EEEEeC----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEEc-CCcEEEEEecCCce
Q 012367          365 FISGSI----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       365 l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                      ++....          .+.|.++|+.+++++........+..++++||++ .|+++.. ++.|.++|..+++.
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            655432          2579999999999988666666889999999997 6777554 89999999998875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=93.62  Aligned_cols=184  Identities=10%  Similarity=-0.023  Sum_probs=91.5

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccCCCCceeEecCCceeeecCCcceeeecccc-
Q 012367          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG-  310 (465)
Q Consensus       233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-  310 (465)
                      ++..+++++.||.|+.||..+++....... ....... ...+.+.+.........++...     .++.+..+..+.. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-----tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-----NNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC----------CCSEECSCCHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECC-----CCceeeeeeccCcc
Confidence            567899999999999999999888766654 2111111 1111111111111111111110     1222222222211 


Q ss_pred             ceE-EEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc
Q 012367          311 DVL-DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  389 (465)
Q Consensus       311 ~V~-~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  389 (465)
                      .+. ...+..++.+++++.|+.|+.||..+|+.+..+....   ...++| ++..+++++.|+.|+.||..+++.+....
T Consensus        82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             HHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            110 1111235678888899999999999999988886443   245667 78889999999999999999887643211


Q ss_pred             CCCCeEEEEEeeCC---CEEEEEEcCCcEEEEEecCCceee
Q 012367          390 VRDVISAICYIPDG---KGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       390 ~~~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      .. .....++.++.   ..+++++.+|.++.||..+++...
T Consensus       158 ~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          158 YF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             EE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             cc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence            11 11223333332   567888999999999999887643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.44  E-value=1.2e-05  Score=80.59  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=109.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +...+++++++|++..|+.+..++.|..||..+.........                                      
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~--------------------------------------  258 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL--------------------------------------  258 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC--------------------------------------
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc--------------------------------------
Confidence            446678999999544555577789999999876432110000                                      


Q ss_pred             cceeeeccccc--eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEecCC---------------CceEEEEEccCC
Q 012367          301 PLQELHGHKGD--VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---------------NYVTCVQFNPID  361 (465)
Q Consensus       301 ~~~~~~gh~~~--V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~---------------~~V~~i~fsp~~  361 (465)
                         ...++...  ...++|+| ++ ++++...++.|+.|+.... ......+.               .....++++| +
T Consensus       259 ---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-d  333 (409)
T 3hrp_A          259 ---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-D  333 (409)
T ss_dssp             ---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-T
T ss_pred             ---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-C
Confidence               00011111  12899999 45 5556667889999998643 33333332               3578999999 8


Q ss_pred             CCEEEEEe-CCCcEEEEeCCCCeEEecccC---------------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367          362 DNYFISGS-IDGKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       362 ~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~---------------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~  420 (465)
                      ++++++-. .++.|+.|++.++.+..+.++               -.....++++|+|.++++-..+++|+.+++
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            99888887 889999999888887765554               246899999999888888778889988875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.41  E-value=3.9e-05  Score=71.73  Aligned_cols=185  Identities=12%  Similarity=0.027  Sum_probs=120.6

Q ss_pred             cCCC--cEEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          220 AHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       220 ~H~~--~I~~l~fspdg~~LaSgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .|..  ....|.|+|++.++++.+.  ++.|++.|+.+++........                                
T Consensus        16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~--------------------------------   63 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD--------------------------------   63 (266)
T ss_dssp             ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--------------------------------
T ss_pred             ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--------------------------------
Confidence            4553  3679999998765555553  689999999987654332210                                


Q ss_pred             eecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCC-CceEEEEEccCCCCEEEEEeCCCcE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~-~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                                 .+ .....+++..+...++.-.++.|.++|..+.+.+..+... ..-+.  +.+ ++..++++..++.|
T Consensus        64 -----------~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l  128 (266)
T 2iwa_A           64 -----------DS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LAT-DGKILYGSDGTSIL  128 (266)
T ss_dssp             -----------TT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEE-CSSSEEEECSSSEE
T ss_pred             -----------CC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEE-CCCEEEEECCCCeE
Confidence                       11 1112455555445556667899999999999999999654 33233  445 55555555678999


Q ss_pred             EEEeCCCCeEEecccC------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc-------ccccCC
Q 012367          375 RIWGVCEKRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGN  441 (465)
Q Consensus       375 ~iwd~~~~~~~~~~~~------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~  441 (465)
                      .++|..+.++......      -..++.+.|. +|...+..-.++.|.+.|..+++. ...+.+.+.       ......
T Consensus       129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~  206 (266)
T 2iwa_A          129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDID  206 (266)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCC
T ss_pred             EEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccC
Confidence            9999999776653221      1246788888 775444444578999999998876 335554321       112234


Q ss_pred             ceeeEEEeecCC
Q 012367          442 KITGIQGRISKN  453 (465)
Q Consensus       442 ~It~~~f~p~gs  453 (465)
                      ...|++|.|++.
T Consensus       207 v~nGIa~~~~~~  218 (266)
T 2iwa_A          207 VLNGIAWDQENK  218 (266)
T ss_dssp             CEEEEEEETTTT
T ss_pred             ceEEEEEcCCCC
Confidence            678999998864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.38  E-value=1.7e-05  Score=79.14  Aligned_cols=141  Identities=7%  Similarity=0.102  Sum_probs=101.0

Q ss_pred             EEEEecCCCEEEEEeCC------CeEEEEeCCCCeEeEEecCC----CceEEEEEccCCCCEEEEEe-------------
Q 012367          313 LDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS-------------  369 (465)
Q Consensus       313 ~~l~~s~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~h~----~~V~~i~fsp~~~~~l~sgs-------------  369 (465)
                      ..+...|+++++++..+      +.|.+.|..+++.+..+...    ..-+.+.|+| +++.+++..             
T Consensus       141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence            45667788877776666      78999999999999998522    2345688899 889888874             


Q ss_pred             ------CCCcEEEEeCCCCeEEecccCC---CCeEEEEE--eeCCCEEEEEE------cCCcEEEEEecCCceeee-Eee
Q 012367          370 ------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGS------ITGTCHFYKASGNDLKLE-KVD  431 (465)
Q Consensus       370 ------~Dg~I~iwd~~~~~~~~~~~~~---~~V~sv~~--spdg~~l~sgs------~dG~v~iwd~~~~~~~~~-~~~  431 (465)
                            .+.+|.+||+.+++++......   .....+.|  +|+|+++.+++      .+++|.+|....+..... .+.
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId  299 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE  299 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence                  3689999999988776644332   34555656  99999988877      467898888877666554 333


Q ss_pred             ecCccccc------------CCceeeEEEeecCCc
Q 012367          432 FHDRKKTS------------GNKITGIQGRISKNY  454 (465)
Q Consensus       432 ~~~~~~~~------------~~~It~~~f~p~gs~  454 (465)
                      ....+...            ....+++.++|+|.+
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf  334 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF  334 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCCE
Confidence            33211110            356889999999876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.37  E-value=5.7e-06  Score=79.03  Aligned_cols=179  Identities=9%  Similarity=0.035  Sum_probs=111.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      ..+.+.+.+++++++|+++++...++.|.+|+.. +..... .                                     
T Consensus        82 ~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~-~-------------------------------------  122 (305)
T 3dr2_A           82 LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL-V-------------------------------------  122 (305)
T ss_dssp             EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-E-------------------------------------
T ss_pred             eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE-E-------------------------------------
Confidence            3456678999999999977776667889999875 221100 0                                     


Q ss_pred             CCcceeeec-cccceEEEEecCCCEEEE-----EeC-------------CCeEEEEeCCCCeEeEEecCCCceEEEEEcc
Q 012367          299 ESPLQELHG-HKGDVLDLAWSNSNYLLS-----CSM-------------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP  359 (465)
Q Consensus       299 ~~~~~~~~g-h~~~V~~l~~s~~~~l~s-----~s~-------------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp  359 (465)
                          ....+ ....+.++++.+++.+..     |..             .+.|..||..+++..... .......++|+|
T Consensus       123 ----~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp  197 (305)
T 3dr2_A          123 ----GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP  197 (305)
T ss_dssp             ----CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT
T ss_pred             ----eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC
Confidence                00001 113456788888764443     322             256888888767654444 445678899999


Q ss_pred             CCCCEEEEEeCC------CcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE
Q 012367          360 IDDNYFISGSID------GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (465)
Q Consensus       360 ~~~~~l~sgs~D------g~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~  429 (465)
                       +++.|+.+...      +.|.+|++..+.+..    .......+..++++++|+ |.+++.+| |.+|+..+..+  ..
T Consensus       198 -dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~~g~~~--~~  272 (305)
T 3dr2_A          198 -DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDSDGQLL--GH  272 (305)
T ss_dssp             -TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSSE-EEEECTTSCEE--EE
T ss_pred             -CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCCc-EEEECCCCCEE--EE
Confidence             88877776655      689999987543211    111234466789999998 45555554 89999854432  23


Q ss_pred             eeecCcccccCCceeeEEEeecCC
Q 012367          430 VDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       430 ~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +....       .++++.|.|++.
T Consensus       273 ~~~~~-------~~~~~~f~~d~~  289 (305)
T 3dr2_A          273 IPTPG-------TASNCTFDQAQQ  289 (305)
T ss_dssp             EECSS-------CCCEEEECTTSC
T ss_pred             EECCC-------ceeEEEEeCCCC
Confidence            33222       377788886543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.34  E-value=1.1e-05  Score=87.03  Aligned_cols=161  Identities=15%  Similarity=0.069  Sum_probs=103.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg-----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .|...+..+.|||||++|+..+.++     .|.+||+.++...                                     
T Consensus       265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------------------  307 (741)
T 1yr2_A          265 ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-------------------------------------  307 (741)
T ss_dssp             TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-------------------------------------
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-------------------------------------
Confidence            3445689999999999998887654     7888887653110                                     


Q ss_pred             eeecCCcceeeeccccceEEEEecCCCEEEEEeC----CCeEEEEeCCCC--eEeEEecC-CCceEEEEEccCCCCEEEE
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM----DKTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~----DgtV~lWD~~~~--~~l~~~~h-~~~V~~i~fsp~~~~~l~s  367 (465)
                            +...+..+...+....+..++.|+..+.    ++.|.+||+.++  .....+.+ ...+..+.+.  ++.++++
T Consensus       308 ------~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~  379 (741)
T 1yr2_A          308 ------PVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS  379 (741)
T ss_dssp             ------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE
T ss_pred             ------ccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE
Confidence                  0122223333333333333456666555    345999999874  34444443 3456677776  5678888


Q ss_pred             EeCCCcEEEEeCC--CCeEEeccc-CCCCeEEEEEeeCCCEEEEEE----cCCcEEEEEecCCce
Q 012367          368 GSIDGKVRIWGVC--EKRVVDWAD-VRDVISAICYIPDGKGFIVGS----ITGTCHFYKASGNDL  425 (465)
Q Consensus       368 gs~Dg~I~iwd~~--~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs----~dG~v~iwd~~~~~~  425 (465)
                      ...|+..+||.+.  .+....+.. ....|..++++|+++.|+...    ..+++++||+.+++.
T Consensus       380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            8889987777553  343333332 456789999999998665332    357899999987764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.30  E-value=5.1e-05  Score=75.79  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=116.8

Q ss_pred             EEEEEECCCCCEEEEEeCC------CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          225 IWTLKFSPDGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      -..+..+|+| +++++..+      |.|.+.|..+.+.........                                  
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~----------------------------------  184 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR----------------------------------  184 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC----------------------------------
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC----------------------------------
Confidence            3467888999 77777665      778898888765443221100                                  


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEe-------------------CCCeEEEEeCCCCeEeEEecCC---CceEEE
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-------------------MDKTVRMWQVGCNQCLNVFDHH---NYVTCV  355 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-------------------~DgtV~lWD~~~~~~l~~~~h~---~~V~~i  355 (465)
                              +-..--.++.|+|++ .++++.                   .+.+|.+||+.+++.+.++...   .....+
T Consensus       185 --------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i  256 (462)
T 2ece_A          185 --------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL  256 (462)
T ss_dssp             --------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred             --------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence                    000112246677764 555553                   3789999999999888888653   244556


Q ss_pred             EE--ccCCCCEEEEEe------CCCcEEEEeCCCCe-----EEeccc----------------CCCCeEEEEEeeCCCEE
Q 012367          356 QF--NPIDDNYFISGS------IDGKVRIWGVCEKR-----VVDWAD----------------VRDVISAICYIPDGKGF  406 (465)
Q Consensus       356 ~f--sp~~~~~l~sgs------~Dg~I~iwd~~~~~-----~~~~~~----------------~~~~V~sv~~spdg~~l  406 (465)
                      .|  +| ++++++.++      .+++|.+|....+.     ++....                ....+..|.++|||++|
T Consensus       257 ~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL  335 (462)
T 2ece_A          257 RPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL  335 (462)
T ss_dssp             EECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred             EeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence            56  99 888877776      56688776654442     111111                02457889999999999


Q ss_pred             EEEEc-CCcEEEEEec-CCceeee-EeeecCcc--------cccCCceeeEEEeecCCc
Q 012367          407 IVGSI-TGTCHFYKAS-GNDLKLE-KVDFHDRK--------KTSGNKITGIQGRISKNY  454 (465)
Q Consensus       407 ~sgs~-dG~v~iwd~~-~~~~~~~-~~~~~~~~--------~~~~~~It~~~f~p~gs~  454 (465)
                      .++.. .+.|.+||+. ..++.+. ++...+..        ..-...-..++++|+|.+
T Consensus       336 YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          336 YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence            98887 6899999986 3333333 44443211        000113467888888765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.26  E-value=2.6e-05  Score=77.00  Aligned_cols=149  Identities=11%  Similarity=0.021  Sum_probs=105.8

Q ss_pred             EEEECCCCCEEEEEeC-----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          227 TLKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       227 ~l~fspdg~~LaSgs~-----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      .....|+++.++....     ++.|.+.|..+.+...                                           
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~-------------------------------------------   73 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG-------------------------------------------   73 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-------------------------------------------
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE-------------------------------------------
Confidence            3456789998877765     6899999998765432                                           


Q ss_pred             ceeeeccccceEEEEecCCC-EEEEEe----------CCCeEEEEeCCCCeEeEEecCC--------CceEEEEEccCCC
Q 012367          302 LQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDD  362 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s----------~DgtV~lWD~~~~~~l~~~~h~--------~~V~~i~fsp~~~  362 (465)
                        .+..-..+  .++++|++ +++.++          .+++|.+||..+.+.+..+.-.        .....++|+| ++
T Consensus        74 --~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DG  148 (386)
T 3sjl_D           74 --MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DG  148 (386)
T ss_dssp             --EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TS
T ss_pred             --EEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CC
Confidence              22212223  38999986 444443          3678999999999998887421        2567899999 99


Q ss_pred             CEEEEEeC--CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC-Cce
Q 012367          363 NYFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDL  425 (465)
Q Consensus       363 ~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~-~~~  425 (465)
                      ++++.+..  ++.|.++|+.+++++........  ...+....+.+++.+.||.+.+.++.+ ++.
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            98888764  68999999999998875544332  223333456777888899988888876 554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.23  E-value=0.00019  Score=66.56  Aligned_cols=187  Identities=12%  Similarity=0.063  Sum_probs=121.1

Q ss_pred             hhhccCCCc--EEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          216 QEIQAHKGC--IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       216 ~~l~~H~~~--I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      +++ .|...  ...|.|+ ++.++.++|.+|  .|+++|+.+++........                            
T Consensus        35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------------------   84 (262)
T 3nol_A           35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------------------   84 (262)
T ss_dssp             EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC----------------------------
T ss_pred             EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC----------------------------
Confidence            444 45433  4789998 777778888877  8999999987654432211                            


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                                     . .-.-..++...+...+..-.++.+.+||..+.+.+..+.....-+.+++   ++..|+.+..+
T Consensus        85 ---------------~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~---dg~~L~~SdGs  145 (262)
T 3nol_A           85 ---------------K-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTH---NDQYLIMSDGT  145 (262)
T ss_dssp             ---------------T-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEE---CSSCEEECCSS
T ss_pred             ---------------C-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEec---CCCEEEEECCC
Confidence                           0 0011223444444445555689999999999999999976554345554   55555555557


Q ss_pred             CcEEEEeCCCCeEEecccC---C---CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc------ccc
Q 012367          372 GKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------KTS  439 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~---~---~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~------~~~  439 (465)
                      +.|.++|..+.+++.....   .   ..++.+.|. +|+..+..-.++.|.+.|..+++.. ..+.+.+-.      ...
T Consensus       146 ~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~Id~~~L~~~~~~~~~~  223 (262)
T 3nol_A          146 PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GIIDLNGILAEAGPLPSP  223 (262)
T ss_dssp             SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EEEECTTGGGGSCSCCSS
T ss_pred             CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EEEECCcCccccccccCc
Confidence            8899999998877653221   1   345667776 7754444445889999999888763 355544321      122


Q ss_pred             CCceeeEEEeecCC
Q 012367          440 GNKITGIQGRISKN  453 (465)
Q Consensus       440 ~~~It~~~f~p~gs  453 (465)
                      .....|+++.|.+.
T Consensus       224 ~~vlNGIA~dp~~~  237 (262)
T 3nol_A          224 IDVLNGIAWDKEHH  237 (262)
T ss_dssp             CCCEEEEEEETTTT
T ss_pred             CCceEEEEEcCCCC
Confidence            45779999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.23  E-value=0.00011  Score=68.28  Aligned_cols=178  Identities=11%  Similarity=0.028  Sum_probs=120.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      ...|.|+ ++.+..+.+.+|.|+++|+.+++..... .                                          
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l------------------------------------------   92 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R------------------------------------------   92 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E------------------------------------------
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C------------------------------------------
Confidence            5788897 4678888889999999999987554322 1                                          


Q ss_pred             eeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                       .. ...-..+++..+...+..-.++.+.+||..+.+.+..+.....-+.+++   ++..|+.+..++.|.++|..+.++
T Consensus        93 -~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A           93 -LG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             -CT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE---ETTEEEEECSSSEEEEECTTTCCE
T ss_pred             -CC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec---CCCEEEEECCCCEEEEEcCCCCeE
Confidence             00 0011234555555666666789999999999999999975554455654   567777666789999999999877


Q ss_pred             EecccC------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc-------ccccCCceeeEEEeec
Q 012367          385 VDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGNKITGIQGRIS  451 (465)
Q Consensus       385 ~~~~~~------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~It~~~f~p~  451 (465)
                      +.....      -..++.+.|. +|+..+..-.++.|.+.|..+++.. ..+++.+-       .........|+++.|.
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            653221      1245677877 7754444435789999999888763 34554421       1123457899999986


Q ss_pred             CC
Q 012367          452 KN  453 (465)
Q Consensus       452 gs  453 (465)
                      +.
T Consensus       246 ~~  247 (268)
T 3nok_A          246 SG  247 (268)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.17  E-value=4.5e-05  Score=76.42  Aligned_cols=196  Identities=12%  Similarity=0.001  Sum_probs=113.4

Q ss_pred             EEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecC-CceeeecCCc
Q 012367          226 WTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIP-DEVFQIEESP  301 (465)
Q Consensus       226 ~~l~fspdg~~LaSgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  301 (465)
                      ..+.|+|||++|+.+..  ++.|.+.|+.+.+............. .......+.+... .....+... ..+.....  
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~d-G~~~~V~~~~~~v~~~~~--  256 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRD-GSLARVDFADGETKVTNT--  256 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT-SSEEEEECCTTCCEEEEC--
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCC-CCEEEEECCCCcEEEEee--
Confidence            46899999999998874  57899999999877655443211000 0000000111111 111111110 01100000  


Q ss_pred             ceeeeccccce-EEEEecCC-CEEEEEeCCCeEEEEeCCCCeEe--EEec-----------CCCceEEEEEccCCCCEEE
Q 012367          302 LQELHGHKGDV-LDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCL--NVFD-----------HHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       302 ~~~~~gh~~~V-~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l--~~~~-----------h~~~V~~i~fsp~~~~~l~  366 (465)
                       ..+.-...++ ..+.+.++ +.++..+..++|.+.|+..+...  ..+.           .......++++| +++.++
T Consensus       257 -~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rly  334 (426)
T 3c75_H          257 -EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIY  334 (426)
T ss_dssp             -CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEE
T ss_pred             -eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEE
Confidence             0011011111 12345665 35555567889999998755421  1111           011122368999 766555


Q ss_pred             EEeC----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEEecCCcee
Q 012367          367 SGSI----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYKASGNDLK  426 (465)
Q Consensus       367 sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd~~~~~~~  426 (465)
                      ....          ++.|.++|..+.+++...........+.|+|||+ .+++.. .++.|.++|+.+.+..
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            5432          3579999999999887665556799999999999 888888 4899999999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.10  E-value=0.00019  Score=70.73  Aligned_cols=106  Identities=9%  Similarity=-0.034  Sum_probs=77.6

Q ss_pred             EEEecCCC-EEEEEe----------CCCeEEEEeCCCCeEeEEecCC--------CceEEEEEccCCCCEEEEEeC--CC
Q 012367          314 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  372 (465)
Q Consensus       314 ~l~~s~~~-~l~s~s----------~DgtV~lWD~~~~~~l~~~~h~--------~~V~~i~fsp~~~~~l~sgs~--Dg  372 (465)
                      .++++|++ +++.+.          .+++|.+||+.+.+.+..+...        .....++|+| ++++|+.++.  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            78999986 555543          3688999999998887776432        3456899999 9999998874  47


Q ss_pred             cEEEEeCCCCeEEec-ccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce
Q 012367          373 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~-~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      .|.++| .+++++.. ......   +.+.|++ +.+++.+.||.+.+++. +++.
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            899999 99988765 554433   4455655 35566677888888888 5544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.08  E-value=0.0012  Score=60.44  Aligned_cols=184  Identities=11%  Similarity=0.047  Sum_probs=119.2

Q ss_pred             cCC--CcEEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367          220 AHK--GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (465)
Q Consensus       220 ~H~--~~I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (465)
                      .|.  .-...+.|++ +.++.+.+.+|  .|+++|+.+++.......+.                               
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-------------------------------   63 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-------------------------------   63 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-------------------------------
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-------------------------------
Confidence            454  3466899986 66777777764  89999999876644322110                               


Q ss_pred             eecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                                  + -.-..++...+...+..-.++.+.+||..+.+.+..+.....-+.++.   ++..|+.+..++.|.
T Consensus        64 ------------~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~---dg~~L~vSdgs~~l~  127 (243)
T 3mbr_X           64 ------------P-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTS---DDSHLYMSDGTAVIR  127 (243)
T ss_dssp             ------------T-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEE---CSSCEEEECSSSEEE
T ss_pred             ------------C-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEee---CCCEEEEECCCCeEE
Confidence                        0 001123444444555566789999999999999999976554456654   455555555688999


Q ss_pred             EEeCCCCeEEecccCC------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc-------cccCCc
Q 012367          376 IWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-------KTSGNK  442 (465)
Q Consensus       376 iwd~~~~~~~~~~~~~------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~  442 (465)
                      ++|..+.+++......      ..++.+.|. +|+..+..-.+..|.+.|..+++.. ..+.+.+-.       ......
T Consensus       128 ~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~~~~~~~v  205 (243)
T 3mbr_X          128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADALTDSTNDV  205 (243)
T ss_dssp             EECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSCCCTTSSC
T ss_pred             EEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccccCCcCCc
Confidence            9999998766532221      345667766 6665544445789999999988763 345544311       123457


Q ss_pred             eeeEEEeecCC
Q 012367          443 ITGIQGRISKN  453 (465)
Q Consensus       443 It~~~f~p~gs  453 (465)
                      ..|+++.|.+.
T Consensus       206 lNGIA~d~~~~  216 (243)
T 3mbr_X          206 LNGIAFDAEHD  216 (243)
T ss_dssp             EEEEEEETTTT
T ss_pred             eEEEEEcCCCC
Confidence            89999998653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.02  E-value=0.00016  Score=77.31  Aligned_cols=159  Identities=13%  Similarity=0.132  Sum_probs=101.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          221 HKGCIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      |...+..+.|+|||++|+....    +..|.+||+.+...                                        
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----------------------------------------  271 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----------------------------------------  271 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----------------------------------------
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----------------------------------------
Confidence            5556789999999998754432    24788888865311                                        


Q ss_pred             ecCCcceeeeccccceEEEEecCCCE-EEEEeCC---CeEEEEeCCCCeE---eEEecCCCceEEEEEccCCCCEEEEEe
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMD---KTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~D---gtV~lWD~~~~~~---l~~~~h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                          ....+..+...+.....++++. ++.+..+   +.|.++|+.++..   .....|...+.  .|+| ++++|+...
T Consensus       272 ----~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~  344 (693)
T 3iuj_A          272 ----PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEY  344 (693)
T ss_dssp             ----CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEE
T ss_pred             ----ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEE
Confidence                1222333444444432223343 4444433   6799999987654   33345655555  8888 777776665


Q ss_pred             CCC---cEEEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcC----CcEEEEEecCCcee
Q 012367          370 IDG---KVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLK  426 (465)
Q Consensus       370 ~Dg---~I~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~~~~  426 (465)
                      .++   .|++||+.++....+. .....+..+.++|+++.++....+    +++..||+.+++..
T Consensus       345 ~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          345 MVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            544   6899999876554432 344567788888998877766555    88999998776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.02  E-value=0.00027  Score=69.45  Aligned_cols=104  Identities=11%  Similarity=-0.008  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCe--EeEEecC-----------CCceEEEEEccCCCCEEEEEeC---------CCcEEEEe
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQ--CLNVFDH-----------HNYVTCVQFNPIDDNYFISGSI---------DGKVRIWG  378 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~--~l~~~~h-----------~~~V~~i~fsp~~~~~l~sgs~---------Dg~I~iwd  378 (465)
                      +.++..+. +.|.+.|+.+..  .+..+..           ......++|+| +++.++.+..         ++.+.++|
T Consensus       223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD  300 (368)
T 1mda_H          223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEEEEE
Confidence            34444444 778888876432  2222211           11112268999 7776665432         23566999


Q ss_pred             CCCCeEEecccCCCCeEEEEEeeCCCE-EEEEE-cCCcEEEEEecCCcee
Q 012367          379 VCEKRVVDWADVRDVISAICYIPDGKG-FIVGS-ITGTCHFYKASGNDLK  426 (465)
Q Consensus       379 ~~~~~~~~~~~~~~~V~sv~~spdg~~-l~sgs-~dG~v~iwd~~~~~~~  426 (465)
                      +.+.+++...........++|+|||+. +++.. .++.|.++|+.+.+..
T Consensus       301 ~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            999998876655557999999999985 55555 4899999999987664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.99  E-value=0.00015  Score=72.54  Aligned_cols=174  Identities=10%  Similarity=0.034  Sum_probs=112.4

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEecc
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK  280 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (465)
                      ......++.--..+  .|+++|||++|+.+.          .++.|.++|..+.+..........               
T Consensus       108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~---------------  170 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA---------------  170 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC---------------
T ss_pred             CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc---------------
Confidence            33333444333345  899999999887775          467899999988655432211100               


Q ss_pred             CCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeC--CCeEEEEeCCCCeEeEEecCCCceEEEEE
Q 012367          281 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQF  357 (465)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~--DgtV~lWD~~~~~~l~~~~h~~~V~~i~f  357 (465)
                                         +   .+ ........+.++|++ +|+.+..  +++|.+.|+.+++.+..+.-...   ...
T Consensus       171 -------------------~---r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~  224 (426)
T 3c75_H          171 -------------------P---RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHI  224 (426)
T ss_dssp             -------------------C---CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEE
T ss_pred             -------------------c---cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eee
Confidence                               0   00 001123357889986 6666653  58999999999999988865432   334


Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCCCeEEec----cc-CCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDW----AD-VRD-VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~----~~-~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      .|...+.+++.+.||++.+.+..++++...    .. ... ....+.|.+++..++..+..|.+.+.|+.+.....
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v  300 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF  300 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence            453446777788899988888866655421    11 111 12346789999988888889999999998766543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.97  E-value=0.0004  Score=74.25  Aligned_cols=106  Identities=14%  Similarity=0.166  Sum_probs=79.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEeEEecCCC--ce--------------------------------------EEEEEccCC
Q 012367          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YV--------------------------------------TCVQFNPID  361 (465)
Q Consensus       322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V--------------------------------------~~i~fsp~~  361 (465)
                      .++.++.+|.++++|..+|+.+.......  ..                                      ..++|+| +
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~  399 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D  399 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence            68889999999999999999875442111  11                                      1267888 6


Q ss_pred             CCEEEEEeC---------------------------------------------CCcEEEEeCCCCeEEecccCCCCeEE
Q 012367          362 DNYFISGSI---------------------------------------------DGKVRIWGVCEKRVVDWADVRDVISA  396 (465)
Q Consensus       362 ~~~l~sgs~---------------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~V~s  396 (465)
                      ..++++...                                             +|.|+.||+.+++++....+...+..
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~  479 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG  479 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence            666665522                                             37799999999998765555555555


Q ss_pred             EEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       397 v~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ..+...+..+++|+.||.++.||..+++....
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence            56777888999999999999999999987543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.90  E-value=0.00038  Score=66.72  Aligned_cols=172  Identities=11%  Similarity=0.049  Sum_probs=105.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      -.+++|+++|+++.++..++.|..|+..+.................          .                .......
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~----------------~g~~~~~   74 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAF----------C----------------ENSTDAE   74 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHH----------H----------------TTCCCGG
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccc----------c----------------ccccchh
Confidence            4578899999878888889999999876543211100000000000          0                0000000


Q ss_pred             eeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec------CCCceEEEEEccCCCCEEEEEeC-------
Q 012367          305 LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-------  370 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~------h~~~V~~i~fsp~~~~~l~sgs~-------  370 (465)
                      .......+..+++.+ ++.|+.+...+.|..+|..++.. ..+.      .......+++.|.+++++++-..       
T Consensus        75 ~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG  153 (322)
T ss_dssp             GHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred             ccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence            001123577899997 77777776666688999876542 2221      12357889998745666665432       


Q ss_pred             ----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecCC
Q 012367          371 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGN  423 (465)
Q Consensus       371 ----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~~  423 (465)
                                ++.|..||..++++......-.....++++|+|+.|+++ +.++.|..|++.+.
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence                      367888998877665443333456789999999977666 45689999998853

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.89  E-value=0.00091  Score=71.29  Aligned_cols=107  Identities=12%  Similarity=0.163  Sum_probs=82.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEeEEecCC--Cc----------e------------------------EEEEEccCCCCE
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NY----------V------------------------TCVQFNPIDDNY  364 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~----------V------------------------~~i~fsp~~~~~  364 (465)
                      +.++.++.+|.|.++|..+|+.+..+...  ..          +                        ..++|+| +..+
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~  406 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGL  406 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCE
Confidence            36888999999999999999988776421  11          1                        1467888 6667


Q ss_pred             EEEEeC-------------------------------------------CCcEEEEeCCCCeEEecccCCCCeEEEEEee
Q 012367          365 FISGSI-------------------------------------------DGKVRIWGVCEKRVVDWADVRDVISAICYIP  401 (465)
Q Consensus       365 l~sgs~-------------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp  401 (465)
                      +++...                                           .+.|..||+.+++++....+...+....+.+
T Consensus       407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~  486 (677)
T 1kb0_A          407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT  486 (677)
T ss_dssp             EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred             EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence            766543                                           2789999999999876555655666667788


Q ss_pred             CCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          402 DGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       402 dg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ++..+++++.||.+++||+.+++....
T Consensus       487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          487 AGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCceeee
Confidence            888999999999999999999887543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.74  E-value=0.019  Score=52.89  Aligned_cols=214  Identities=9%  Similarity=0.017  Sum_probs=115.9

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCC-CCcc-ccc-CCCeEEeccCCCCceeEecCCceeeecC
Q 012367          224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDD-GGFG-SNA-KEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (465)
Q Consensus       224 ~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
                      .+.+++|++++..|+ +-...+.|.+++.............. .... ... ..+.+.+...........      ....
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~------~~~g  110 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA------KMDG  110 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE------ETTS
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEE------EcCC
Confidence            467999999766554 44567899999987653322111100 0000 001 112222222211111111      1112


Q ss_pred             Ccceeeec-cccceEEEEecC-CCEEEEEeC---CCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCC-EEEEEeCC
Q 012367          300 SPLQELHG-HKGDVLDLAWSN-SNYLLSCSM---DKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN-YFISGSID  371 (465)
Q Consensus       300 ~~~~~~~g-h~~~V~~l~~s~-~~~l~s~s~---DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~-~l~sgs~D  371 (465)
                      .....+.. .......++++| ++.|+.+..   .+.|..+++.. .....+  ..-.....++++| ++. ++++-...
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~  188 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGT  188 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEET-TTTEEEEEETTT
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCC
Confidence            22222221 124568899998 466555543   36888888763 333333  2234678999999 655 44555566


Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      +.|.++|..+.....+.........++..  +..|+++. ..+.|..+|..+++.. ..+....     .....++.+.|
T Consensus       189 ~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~-----~~~p~gi~~~~  260 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHK-----QTRLYGITIAL  260 (267)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE-EEECCSS-----CCCCCCEEEEC
T ss_pred             CEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce-EEEcccc-----ccccceeeecC
Confidence            89999999865544433333445666653  55666655 4689999999877653 2332211     12366788887


Q ss_pred             cCC
Q 012367          451 SKN  453 (465)
Q Consensus       451 ~gs  453 (465)
                      ++-
T Consensus       261 ~~~  263 (267)
T 1npe_A          261 SQC  263 (267)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.64  E-value=0.00036  Score=72.06  Aligned_cols=92  Identities=10%  Similarity=0.046  Sum_probs=70.4

Q ss_pred             CeEEEEeCCC--CeE-eEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCe------------EEecccCCCC
Q 012367          330 KTVRMWQVGC--NQC-LNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKR------------VVDWADVRDV  393 (465)
Q Consensus       330 gtV~lWD~~~--~~~-l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~------------~~~~~~~~~~  393 (465)
                      +.|.+.|..+  +.. +..+.-.....++.++| |++++++++ .+.+|.++|+.+.+            ++........
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence            5599999998  555 56666556678899999 888776655 57899999998653            4444455567


Q ss_pred             eEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          394 ISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ...++|+|+|...++.-.|+.|..||+..
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            89999999994344455699999999986

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.62  E-value=0.0013  Score=70.06  Aligned_cols=92  Identities=15%  Similarity=0.210  Sum_probs=68.8

Q ss_pred             CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc--cCCCCeEEEEEeeCCCEEE
Q 012367          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFI  407 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~V~sv~~spdg~~l~  407 (465)
                      +.|..||+.+++.+..+.+...+....+.. .+..++.++.|+.+++||..+++++...  ++.....-+.|.++|+.++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            789999999999999988776666666666 7778888999999999999999988633  3333345567788997554


Q ss_pred             EE-Ec----------------CCcEEEEEecC
Q 012367          408 VG-SI----------------TGTCHFYKASG  422 (465)
Q Consensus       408 sg-s~----------------dG~v~iwd~~~  422 (465)
                      +. +.                .+.+..|.+..
T Consensus       536 ~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          536 SVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EEeccCCccccccccccccCCCCeEEEEeccc
Confidence            43 22                36777777763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.61  E-value=0.0019  Score=60.18  Aligned_cols=114  Identities=10%  Similarity=0.026  Sum_probs=81.7

Q ss_pred             ceEEEEecCCCEEEEEeC---CCeEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367          311 DVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~---DgtV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~  385 (465)
                      ....+.|++++.|+.++.   ++.|++.|+.+++.+..+....  ....+++.  .+..+++.-.++.+.++|..+.+++
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            367899999776555543   5899999999999998875322  33455554  3455566667899999999998887


Q ss_pred             ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       386 ~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ...... .-....+++||+.++++..++.+.++|..+.+...
T Consensus       100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~  140 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIK  140 (266)
T ss_dssp             EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEE
T ss_pred             EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEE
Confidence            644332 11224466789888888888999999998876543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.57  E-value=0.023  Score=53.69  Aligned_cols=150  Identities=14%  Similarity=0.114  Sum_probs=93.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      .....++|+++|+++++-..++.|..||.......                                             
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------------------------------------------   66 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------------------------------------------   66 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---------------------------------------------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE---------------------------------------------
Confidence            45778999999997777778889988886642110                                             


Q ss_pred             eeeeccccceEEEEecCCCEEEEEe--CCC-eEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367          303 QELHGHKGDVLDLAWSNSNYLLSCS--MDK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~~l~s~s--~Dg-tV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw  377 (465)
                       .+ .....+..+++.+++.|+.+.  .++ .|..+|..+++......  .......++..+ ++..+++-..++.|.++
T Consensus        67 -~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~  143 (306)
T 2p4o_A           67 -HA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI  143 (306)
T ss_dssp             -EE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred             -EE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence             00 011347788999876444443  223 47777877777544332  223345555555 55555655568899999


Q ss_pred             eCCCC--eEEec---------ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367          378 GVCEK--RVVDW---------ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG  422 (465)
Q Consensus       378 d~~~~--~~~~~---------~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~  422 (465)
                      |..++  ++...         ...-...+.+  +|+++.|+++. ..+.|..|++..
T Consensus       144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            98764  23211         0111234555  88988776655 478899999875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.56  E-value=0.064  Score=57.92  Aligned_cols=198  Identities=12%  Similarity=0.105  Sum_probs=116.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe-cCCceeeec--
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV-IPDEVFQIE--  298 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  298 (465)
                      ...|++|...++|.+.+ |+.+| |.+|+..+............. ..........+........-+. ....+..+.  
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVEN-GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTST-TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCC-CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCC
Confidence            45699999999997554 44455 888998765543221111100 0000001111111111111111 112222221  


Q ss_pred             CCcceeeec-------cccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---------CCCceEEEEEccCCC
Q 012367          299 ESPLQELHG-------HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNPIDD  362 (465)
Q Consensus       299 ~~~~~~~~g-------h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---------h~~~V~~i~fsp~~~  362 (465)
                      ......+..       ....|.++...+++.|..|+.++-|..||..++.......         ....|.+++..+ ++
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g  417 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KK  417 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CC
Confidence            111222211       2356899998888888889988889999998776544321         135799999887 77


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          363 NYFISGSIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.|..|..++-|.+||..+++...+..     ....|.++...++|.. .+|+.+| +.+|+..+++.
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~G-l~~~~~~~~~~  483 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTLSA-LVRFNPEQRSF  483 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEESSC-EEEEETTTTEE
T ss_pred             CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEecCc-eeEEeCCCCeE
Confidence            746667777789999999887665432     3457899998888865 4455554 77898877654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.56  E-value=0.013  Score=57.05  Aligned_cols=102  Identities=9%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-C-CCCeEEE
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V-RDVISAI  397 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~-~~~V~sv  397 (465)
                      ++.++.++.++.|..+|..+++.+....... ...+..   ++..++.++.++.|..+|..+++...... . ...+.+.
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence            4678888899999999999999887775433 344444   45677778889999999999998764332 1 2223333


Q ss_pred             EEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ..  .+..|++++.+|.++++|..++++..
T Consensus       315 ~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          315 VL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             EE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            33  35689999999999999999887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.56  E-value=0.0086  Score=58.24  Aligned_cols=185  Identities=7%  Similarity=0.023  Sum_probs=105.5

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccc
Q 012367          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD  311 (465)
Q Consensus       233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~  311 (465)
                      ++..++.++.++.|..+|..+++.............. ....+.+.+... ..........     ..+.+...... ..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~-~g~l~~~d~~-----tG~~~W~~~~~-~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTS-NGQLQALNEA-----DGAVKWTVNLD-MP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECT-TSEEEEEETT-----TCCEEEEEECC-C-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcC-CCeEEEEECC-----CCcEEEEEeCC-CC
Confidence            3557888899999999999988876655443221111 111122222211 1111111110     01111111111 11


Q ss_pred             e------EEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCce-----EE---EEEcc-CCCCEEEEEeCCCcEEE
Q 012367          312 V------LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-----TC---VQFNP-IDDNYFISGSIDGKVRI  376 (465)
Q Consensus       312 V------~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V-----~~---i~fsp-~~~~~l~sgs~Dg~I~i  376 (465)
                      +      ...... ++.++.++.++.|..+|..+++.+..+....+.     ..   +.-.| ..+..++.++.++.|..
T Consensus       175 ~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          175 SLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             ----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             ceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence            1      111111 467888889999999999999988877533210     00   11111 03467777888999999


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      +|..+++.+..... .....+..  ++..+++++.+|.+..+|..+++....
T Consensus       254 ~d~~tG~~~w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~  302 (376)
T 3q7m_A          254 LDLRSGQIMWKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT  302 (376)
T ss_dssp             EETTTCCEEEEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             EECCCCcEEeeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence            99999887643332 23444433  467888999999999999998876543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.55  E-value=0.0017  Score=61.72  Aligned_cols=184  Identities=17%  Similarity=0.124  Sum_probs=109.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc--cCCCeEEeccCCCCceeEecCCceeeec-
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN--AKEGKIKFGKKKSSHVPVVIPDEVFQIE-  298 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  298 (465)
                      ...+.++...++|. |..|+.++.|..+|.. +................  ...+.+.++.           ..++.+. 
T Consensus       136 ~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-----------~~l~~~d~  202 (330)
T 3hxj_A          136 KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-----------DKVYAINP  202 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-----------SSEEEECT
T ss_pred             CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-----------CEEEEECC
Confidence            33456667777776 5567788999999988 55444333222111111  1122222222           2222222 


Q ss_pred             -CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC-CCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          299 -ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       299 -~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h-~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                       ...+..+......+.++...+++.|..++.++.|..+|. ++..+..+.. ...+..+.+.+ ++ .+..++.++.|..
T Consensus       203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~  279 (330)
T 3hxj_A          203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYA  279 (330)
T ss_dssp             TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEE
T ss_pred             CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEE
Confidence             122223333445677888888888888888888999985 5666666643 33344555654 44 5666777888999


Q ss_pred             EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      +|. +++... .......+.++...++|. |.+|+.+|.+++......
T Consensus       280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            996 555443 333455677777777775 677899999998876543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.53  E-value=0.0018  Score=60.09  Aligned_cols=112  Identities=10%  Similarity=0.046  Sum_probs=84.2

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceE--EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT--CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~--~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  388 (465)
                      ....|.|+.+.++.+.+.+|.|+++|+.+++.+..+ -.....  .+++.  .+++++....++.+.+||..+.+++...
T Consensus        56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            457888886667788889999999999999988887 444433  35554  4566666777899999999999888744


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      .....-..++  +|++.|+++..++.|+++|..+.+..-
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVG  169 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence            4433334444  678888888889999999998876643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.52  E-value=0.0035  Score=57.39  Aligned_cols=116  Identities=8%  Similarity=-0.097  Sum_probs=83.6

Q ss_pred             cceEEEEecCCCEEEEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec
Q 012367          310 GDVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  387 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~  387 (465)
                      .....+.|+++.++.+.+.+|  .|+.+|+.+++.+....-..........+.++++++....++.+.+||..+.+++..
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            456789998855666777754  899999999999998865444433333332455666666789999999999988875


Q ss_pred             ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367          388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (465)
Q Consensus       388 ~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~  427 (465)
                      ......-..+  .++++.|+++..++.|.++|..+.+..-
T Consensus       101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~  138 (243)
T 3mbr_X          101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVG  138 (243)
T ss_dssp             EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred             EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence            4444333444  4678888888889999999998876643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.49  E-value=0.0015  Score=67.49  Aligned_cols=117  Identities=14%  Similarity=0.094  Sum_probs=83.2

Q ss_pred             ceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe------------EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ------------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       311 ~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~------------~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      ...++.++|+|  .++++..+.+|.++|+.+.+            ......-......++|+| +++..++.-.|+.|.+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVK  356 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEE
Confidence            45678999987  45566678999999998653            344555666789999999 8866667778999999


Q ss_pred             EeCCC----------CeEEecccCCCCe------EEEEEeeCCCEEEEEEc--CCcE-----------EEEEecCCceee
Q 012367          377 WGVCE----------KRVVDWADVRDVI------SAICYIPDGKGFIVGSI--TGTC-----------HFYKASGNDLKL  427 (465)
Q Consensus       377 wd~~~----------~~~~~~~~~~~~V------~sv~~spdg~~l~sgs~--dG~v-----------~iwd~~~~~~~~  427 (465)
                      ||+.+          .+++........+      ..+..+|||++|+++..  ..++           .++|++++++.+
T Consensus       357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            99976          4455432222222      22355899999999875  1233           899998888766


Q ss_pred             e
Q 012367          428 E  428 (465)
Q Consensus       428 ~  428 (465)
                      .
T Consensus       437 v  437 (595)
T 1fwx_A          437 V  437 (595)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.49  E-value=0.041  Score=50.77  Aligned_cols=190  Identities=11%  Similarity=0.089  Sum_probs=113.1

Q ss_pred             hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      +.+.+-.+.+..|+|+|++. +++....++.|...|.. +.......                                 
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~---------------------------------   65 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP---------------------------------   65 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE---------------------------------
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe---------------------------------
Confidence            45566667899999999866 44556778888888876 32221110                                 


Q ss_pred             eeecCCcceeeeccccceEEEEecCCCEE-EEEeCCCeEEEEeCCCCeE---eEEec-------CCCceEEEEEccCCCC
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQC---LNVFD-------HHNYVTCVQFNPIDDN  363 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l-~s~s~DgtV~lWD~~~~~~---l~~~~-------h~~~V~~i~fsp~~~~  363 (465)
                                +.+ ....-.|++.+++.+ ++.-.++.+.++++.....   +....       .+.....|+|+| .++
T Consensus        66 ----------l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~  133 (255)
T 3qqz_A           66 ----------LDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDH  133 (255)
T ss_dssp             ----------CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTT
T ss_pred             ----------cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCC
Confidence                      111 245667888777644 5555677888888765432   22221       233568999999 665


Q ss_pred             EEEEEeCCCcEEEEeCC----CC--eEEec-----ccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCceeeeEee
Q 012367          364 YFISGSIDGKVRIWGVC----EK--RVVDW-----ADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVD  431 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~----~~--~~~~~-----~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~~~~~~  431 (465)
                      .|.++.......||.+.    +.  .+...     ...-..+.+++++|....+ +.......+..+|..+.  ....+.
T Consensus       134 ~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~  211 (255)
T 3qqz_A          134 TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMS  211 (255)
T ss_dssp             EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEE
T ss_pred             EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEE
Confidence            55555554444555443    11  22110     1123457899999965555 44445677888887765  333444


Q ss_pred             ecCcc---cccCCceeeEEEeecCC
Q 012367          432 FHDRK---KTSGNKITGIQGRISKN  453 (465)
Q Consensus       432 ~~~~~---~~~~~~It~~~f~p~gs  453 (465)
                      +....   .....+-.|+.|.++|+
T Consensus       212 L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          212 LTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             CSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             cCCccCCcccccCCCCeeEECCCCC
Confidence            44321   12245788999999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.47  E-value=0.0017  Score=70.07  Aligned_cols=154  Identities=11%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             ccCCC-cEEEEEEC-CCCCEEEEEeC-CC----cEEEEecCCc-eeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367          219 QAHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (465)
Q Consensus       219 ~~H~~-~I~~l~fs-pdg~~LaSgs~-Dg----~V~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (465)
                      .+|.- .+...+|| |||++||-+.. +|    +|+++|+.++ ....                                
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------------------  216 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------------------  216 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------------------
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------------------
Confidence            34553 68899999 99998875432 33    5999998874 3100                                


Q ss_pred             CCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCC-----CeEEEEeCCCCeE--eEEe--cCCCceEEEEEccC
Q 012367          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNPI  360 (465)
Q Consensus       291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D-----gtV~lWD~~~~~~--l~~~--~h~~~V~~i~fsp~  360 (465)
                               ..+   .   .....++|+|++ .|+....|     ..|.++++.+++.  ...+  ........+.|+| 
T Consensus       217 ---------~~~---~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-  280 (751)
T 2xe4_A          217 ---------DKV---S---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-  280 (751)
T ss_dssp             ---------CCE---E---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-
T ss_pred             ---------ccc---c---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-
Confidence                     000   0   112457899986 55555554     3688899987642  2333  3345677889999 


Q ss_pred             CCCEEEEEeC---CCcEEEEeCCCC--eE--Eeccc-CCCCeEEEEEeeCCCEEEEEEc-C--C--cEEEEEec
Q 012367          361 DDNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGSI-T--G--TCHFYKAS  421 (465)
Q Consensus       361 ~~~~l~sgs~---Dg~I~iwd~~~~--~~--~~~~~-~~~~V~sv~~spdg~~l~sgs~-d--G--~v~iwd~~  421 (465)
                      ++++|+..+.   ...|.++|+.++  ..  ..+.. ......++.|+. |+.|+..+. +  +  .|..+++.
T Consensus       281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence            9998876653   346888898764  33  33332 334445555443 555554443 3  3  45555554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.45  E-value=1.3e-05  Score=79.03  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                      ++.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.|+.|+.||..+++.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCce
Confidence            57899999999999999999999988876 5565555556 677888888999999999987754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.42  E-value=0.011  Score=56.66  Aligned_cols=109  Identities=15%  Similarity=0.105  Sum_probs=81.0

Q ss_pred             eEEEEe---cCCCEEEEEeC--------------CCeEEEEeCC---CCeEeEEecC--------------CCceEEEEE
Q 012367          312 VLDLAW---SNSNYLLSCSM--------------DKTVRMWQVG---CNQCLNVFDH--------------HNYVTCVQF  357 (465)
Q Consensus       312 V~~l~~---s~~~~l~s~s~--------------DgtV~lWD~~---~~~~l~~~~h--------------~~~V~~i~f  357 (465)
                      +..|.|   .|++.|+.+..              +..|..+|+.   +++.+....-              ......++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            467888   56674444332              6779999999   8877766541              124789999


Q ss_pred             ccCCCCEEEEEeCC-CcEEEEeCCCCeEEeccc------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          358 NPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       358 sp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~~~------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      .+ +|+..++++.. +.|...+.....+..+..      .....+.|+++|+|+.|++....|.+..+|+.
T Consensus       145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            99 99999999988 888888876554443321      12236799999999999888779999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.41  E-value=0.021  Score=52.65  Aligned_cols=137  Identities=7%  Similarity=0.006  Sum_probs=87.3

Q ss_pred             cceEEEEecCC-CE-EEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          310 GDVLDLAWSNS-NY-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       310 ~~V~~l~~s~~-~~-l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      ..+..++|+++ +. +++...++.|..+++........+. .......++++|..+.++++-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            35678999984 54 4455567899999997665433333 225788999998345555666667899999987543222


Q ss_pred             ccc-CCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          387 WAD-VRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       387 ~~~-~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      +.. .......++++|++..|+.+..   .+.|..+++.+.....  +. ..    ......++.+.|++.
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~-~~----~~~~P~gia~d~~~~  179 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA-QD----NLGLPNGLTFDAFSS  179 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE-CT----TCSCEEEEEEETTTT
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EE-EC----CCCCCcEEEEcCCCC
Confidence            222 2256789999997666666554   4688888887644321  11 11    124566777777543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.40  E-value=0.0024  Score=59.15  Aligned_cols=116  Identities=10%  Similarity=0.042  Sum_probs=80.7

Q ss_pred             ceEEEEecCCCEEEEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc
Q 012367          311 DVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  388 (465)
                      -...|.|+.+.++.+++.+|  .|+++|+.+++.+..+.-..........+..+++++....++.+.+||..+.+++...
T Consensus        44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            34788888444566777766  8999999999999988654444333233313455555556899999999998887644


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .....-  ..+++|++.|+++..++.|.++|..+.+..-.
T Consensus       124 ~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          124 NYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             ECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred             ECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence            443322  33446788888877788899999988766433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.39  E-value=0.00033  Score=68.79  Aligned_cols=99  Identities=9%  Similarity=-0.038  Sum_probs=76.6

Q ss_pred             EEEEEeCCC----eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeEEec
Q 012367          322 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW  387 (465)
Q Consensus       322 ~l~s~s~Dg----tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs----------~Dg~I~iwd~~~~~~~~~  387 (465)
                      .+++...++    +|.+.|..+++.+..+.-...- .+.++| ++++++++.          .++.|.+||+.+++++..
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            455555555    8899999999999999643333 799999 888877776          368899999999988764


Q ss_pred             ccCC--------CCeEEEEEeeCCCEEEEEEc--CCcEEE--EEecC
Q 012367          388 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASG  422 (465)
Q Consensus       388 ~~~~--------~~V~sv~~spdg~~l~sgs~--dG~v~i--wd~~~  422 (465)
                      ....        .....++++|||++++++..  ...+.+  +|+.+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            4321        34678999999999999875  457888  88866

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.36  E-value=0.013  Score=55.89  Aligned_cols=110  Identities=5%  Similarity=0.048  Sum_probs=70.4

Q ss_pred             ceEEEEecC-CCEEEEEeC------------------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE-eC
Q 012367          311 DVLDLAWSN-SNYLLSCSM------------------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SI  370 (465)
Q Consensus       311 ~V~~l~~s~-~~~l~s~s~------------------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg-s~  370 (465)
                      ...++++.+ ++.|..+..                  ++.|..||..+++.......-.....|+|+| ++++++.+ ..
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyv~d~~  205 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFVLVAEFL  205 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEEEEEEGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEEEEEeCC
Confidence            356788888 764443332                  3678899988776543333223456799999 88755544 55


Q ss_pred             CCcEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCEEEEEEc----------CCcEEEEEecC
Q 012367          371 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSI----------TGTCHFYKASG  422 (465)
Q Consensus       371 Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~l~sgs~----------dG~v~iwd~~~  422 (465)
                      .+.|.+|++...   ....+..... ...+++.++|++.++...          .+.|..+|..+
T Consensus       206 ~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G  269 (322)
T 2fp8_A          206 SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG  269 (322)
T ss_dssp             GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred             CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC
Confidence            688999998752   2222212233 788999999986666544          46677787653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.31  E-value=0.0033  Score=67.10  Aligned_cols=79  Identities=14%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEE
Q 012367          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGF  406 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l  406 (465)
                      +++|..||+.+++.+..+.+...+..-.+.. .+.+++.|+.|+.|+.||..+++++....  +.....-+.|..+|+..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            4889999999999999887666555445555 67889999999999999999999875332  22223457788899754


Q ss_pred             EE
Q 012367          407 IV  408 (465)
Q Consensus       407 ~s  408 (465)
                      ++
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.30  E-value=0.0032  Score=59.69  Aligned_cols=175  Identities=12%  Similarity=0.034  Sum_probs=107.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc--cCCCeEEeccCCCCceeEecCCceeeec--CCcceeeeccc
Q 012367          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN--AKEGKIKFGKKKSSHVPVVIPDEVFQIE--ESPLQELHGHK  309 (465)
Q Consensus       234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gh~  309 (465)
                      +..|..++.++.|..+|.. +................  ...+.+.++         .....++.+.  ...+..+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vg---------t~~~~l~~~d~~g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVG---------SNDNYLYAINPDGTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEE---------CTTSEEEEECTTSCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEE---------cCCCEEEEECCCCCEeEEEecCC
Confidence            4467778888999999987 54443333222111100  001111111         1112333332  23344455555


Q ss_pred             cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc
Q 012367          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  388 (465)
                      ..+.++...+++.+..++  +.|..+| .+++.+..+. ....+.++...+ ++. +..++.++.|..+|..........
T Consensus       177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~g~~~~~~~  251 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPDGTEKWRFK  251 (330)
T ss_dssp             CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECTTSCEEEEEE
T ss_pred             CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECCCCCEeEEee
Confidence            666777777788999888  8889999 7777776664 445688888877 554 455667899999985444444455


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      .....+.++...++ ..|.+++.+|.+..+|. +++.
T Consensus       252 ~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          252 TGKRIESSPVIGNT-DTIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             CSSCCCSCCEECTT-SCEEEECTTCEEEEECT-TSCE
T ss_pred             CCCCccccceEcCC-CeEEEecCCCCEEEECC-CCcE
Confidence            55555666666544 49999999999999986 4443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.27  E-value=0.1  Score=56.33  Aligned_cols=196  Identities=9%  Similarity=0.057  Sum_probs=114.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CCceeeec--
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PDEVFQIE--  298 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--  298 (465)
                      ...|++|...++|. |-.|+.++-|..|+..+.............  .........+.........+.. ...+..+.  
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKN--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSS--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCC--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCC
Confidence            46799999999997 455666677888887654322111111000  0000001111111111111111 11222221  


Q ss_pred             CCcceeee---------ccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCC
Q 012367          299 ESPLQELH---------GHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDN  363 (465)
Q Consensus       299 ~~~~~~~~---------gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~  363 (465)
                      ......+.         -....|.++...+++. |..|+.++-|.+||..+++......     ....|.++...+ +++
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~  464 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGN  464 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSC
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCC
Confidence            11222221         1235788998887776 8888888889999998876544322     245799999888 777


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEeccc-------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVDWAD-------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~-------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.+.. . +-|.+||..+++......       ....|.++...++|...+ |+. +-+..|+..++..
T Consensus       465 lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          465 LWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             EEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE
T ss_pred             EEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE
Confidence            66554 3 458999998887665432       236789999998886554 455 4577889877654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.0057  Score=61.29  Aligned_cols=152  Identities=11%  Similarity=0.077  Sum_probs=94.3

Q ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          224 CIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       224 ~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      .-..|+++| ++..|+.+...+.|+.+|.......                                             
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---------------------------------------------  172 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---------------------------------------------  172 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---------------------------------------------
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---------------------------------------------
Confidence            346789998 4555666655577888887653221                                             


Q ss_pred             eeeeccccceEEEEecCCC-EEEEEeC-CC----eEEEEeCCCCeEe--EEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          303 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~-Dg----tV~lWD~~~~~~l--~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                       .+.........|++++++ .|+.+.. ++    .+.+.+. .+...  ..+........++++|.++.++++-...+.|
T Consensus       173 -~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V  250 (430)
T 3tc9_A          173 -TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV  250 (430)
T ss_dssp             -EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             -EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence             111123456789999875 3554443 22    3333443 22211  2222233456788999667777776678899


Q ss_pred             EEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367          375 RIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG  422 (465)
Q Consensus       375 ~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~  422 (465)
                      ..++..++....+  .........++|+|+|++|+++. ..+.|..++...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            9999987765332  22234678999999999655554 578899988875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.25  E-value=0.0064  Score=64.62  Aligned_cols=58  Identities=14%  Similarity=0.193  Sum_probs=45.4

Q ss_pred             CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      +|.|..||+.+++++........+....+...+..+++|+.||.++.||..+++....
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~  494 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence            4789999999999876444444455555666788999999999999999998877543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.13  E-value=0.014  Score=60.89  Aligned_cols=58  Identities=16%  Similarity=0.059  Sum_probs=41.7

Q ss_pred             CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      +|.|..||+.+++++-.......+..-.....+..+++|+.||.++.||..+++....
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            5789999999998775333333333222333567888899999999999999987554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.01  E-value=0.022  Score=59.30  Aligned_cols=106  Identities=8%  Similarity=-0.004  Sum_probs=74.5

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEeEEecCCC--------------ce--------------------------EEEEEccCC
Q 012367          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--------------YV--------------------------TCVQFNPID  361 (465)
Q Consensus       322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--------------~V--------------------------~~i~fsp~~  361 (465)
                      .++.++.+|.+.++|..+++.+..+....              ++                          ..++|+| +
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~  396 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E  396 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence            46678889999999999999887764221              11                          1356777 5


Q ss_pred             CCEEEEEe-------------------------------------CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC
Q 012367          362 DNYFISGS-------------------------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK  404 (465)
Q Consensus       362 ~~~l~sgs-------------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~  404 (465)
                      ..+++...                                     .++.|..||+.+++++....+...+.+..+...+.
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg  476 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG  476 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence            55555543                                     35789999999998775444444444444455667


Q ss_pred             EEEEEEcCCcEEEEEecCCceeee
Q 012367          405 GFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       405 ~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .+++++.||.++.||..+++....
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEE
Confidence            888899999999999999887543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.82  E-value=0.2  Score=47.54  Aligned_cols=115  Identities=10%  Similarity=-0.011  Sum_probs=75.4

Q ss_pred             ceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEe
Q 012367          311 DVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVD  386 (465)
Q Consensus       311 ~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~  386 (465)
                      ....+++.+ ++ ++++-...+.|.+.++........+. .-.....+++.|.++.++++.... +.|..+++.......
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~  157 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence            345677764 44 45566778899999987544333333 335678999999445555554433 688888876543322


Q ss_pred             c-ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCce
Q 012367          387 W-ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL  425 (465)
Q Consensus       387 ~-~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~  425 (465)
                      + ...-...+.++++|++..|+.+. ..+.|..+|+.+...
T Consensus       158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~  198 (316)
T 1ijq_A          158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (316)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence            2 22345688999999877776665 467899999886543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.75  E-value=0.56  Score=50.37  Aligned_cols=200  Identities=10%  Similarity=0.027  Sum_probs=110.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC-CCcccccCCCeEEeccCCCCceeEec-CCceeeec
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD-GGFGSNAKEGKIKFGKKKSSHVPVVI-PDEVFQIE  298 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  298 (465)
                      ....|++|...++|. |-.|+.++-|..++.............. .............+.........+.. ...++.+.
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFE  389 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEE
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEE
Confidence            456799999999887 5556666668888876543322111100 00000000000111111111111111 12222221


Q ss_pred             CC--cceee----eccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEe
Q 012367          299 ES--PLQEL----HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGS  369 (465)
Q Consensus       299 ~~--~~~~~----~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs  369 (465)
                      ..  ....+    ......|.++...+++.|..|+.++-|..+|..+++......   ....|.++...+ ++++.+ |.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt  467 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GT  467 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EE
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EE
Confidence            11  01111    123467889988877777778887889999998776533221   346799999887 666544 44


Q ss_pred             CCCcEEEEeCCCCeEEeccc------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          370 IDGKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       370 ~Dg~I~iwd~~~~~~~~~~~------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      . +-|.+||..+++......      ....|.++...++|.. .+|+..+-+..||..+++.
T Consensus       468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEE
T ss_pred             C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeE
Confidence            4 568999988766544322      1367899999888865 5556544466788766544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.73  E-value=0.2  Score=48.30  Aligned_cols=113  Identities=6%  Similarity=-0.066  Sum_probs=75.2

Q ss_pred             eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEec
Q 012367          312 VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVDW  387 (465)
Q Consensus       312 V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~  387 (465)
                      ...+++.+ ++ ++++-...+.|.+.++........+. .-.....+++.|.++.++++-... +.|..+++.......+
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  197 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  197 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            35677765 34 45566667889999987543333332 335678999999555566665555 7888888876443333


Q ss_pred             c-cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCc
Q 012367          388 A-DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGND  424 (465)
Q Consensus       388 ~-~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~  424 (465)
                      . ..-...+.++++|++..|+.+.. .+.|..+++.+..
T Consensus       198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence            2 23456789999997777666654 6789999987644

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.69  E-value=0.23  Score=46.65  Aligned_cols=98  Identities=12%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             eEEEEecCCC--EEEEEeCCCeEEEEeCCC-CeE--eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          312 VLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       312 V~~l~~s~~~--~l~s~s~DgtV~lWD~~~-~~~--l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      ...|  ++++  ++++-+..+.|..+|+.. +..  ...+........+++.+ +++++++....+.|.++|.. +++..
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            3445  5543  556666788999999864 321  22222223456789999 89988887778899999976 54422


Q ss_pred             ---cccCCCCeEEEEEe---eCCCEEEEEEcCC
Q 012367          387 ---WADVRDVISAICYI---PDGKGFIVGSITG  413 (465)
Q Consensus       387 ---~~~~~~~V~sv~~s---pdg~~l~sgs~dG  413 (465)
                         ....-..+++++|.   |+++.|++++..+
T Consensus       247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence               22223668999999   8988888877654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.69  E-value=0.1  Score=49.87  Aligned_cols=107  Identities=7%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      ...+..+.+.+++.++.++.+|.+++++...+..-..+.     +...+.++.+.| ++.+++++. ++.| .+....+.
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESSTTS
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCCCc
Confidence            346677888887767777788888877533233322222     223588999998 777777665 6766 34444443


Q ss_pred             EEe-cc---cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          384 VVD-WA---DVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       384 ~~~-~~---~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      .-. ..   .....+.++.|.+++. +++++.+|.|.-++
T Consensus       281 tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          281 TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            222 22   2345688899986654 66667889776554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.63  E-value=0.34  Score=46.64  Aligned_cols=111  Identities=14%  Similarity=0.222  Sum_probs=80.6

Q ss_pred             cceEEEEe--cCC-C--EEEEEeCCCeEEEEeC-------CCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367          310 GDVLDLAW--SNS-N--YLLSCSMDKTVRMWQV-------GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (465)
Q Consensus       310 ~~V~~l~~--s~~-~--~l~s~s~DgtV~lWD~-------~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw  377 (465)
                      ..+..+++  +|. +  +++....+|.+..|++       .+.+.++.|.....+..+...+ ....|+.+-.+.-|..+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~  206 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF  206 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence            45556666  553 4  6888888999999988       2346788888888899999998 77788888888666666


Q ss_pred             eCC-----CCeEEeccc---CCCCeEEEEEe--eCCC-EEEEEE-cCCcEEEEEec
Q 012367          378 GVC-----EKRVVDWAD---VRDVISAICYI--PDGK-GFIVGS-ITGTCHFYKAS  421 (465)
Q Consensus       378 d~~-----~~~~~~~~~---~~~~V~sv~~s--pdg~-~l~sgs-~dG~v~iwd~~  421 (465)
                      +..     +++++...+   ....+..|++.  ++|+ +|++++ .+.+..+||..
T Consensus       207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            654     345554332   23468888884  5666 677777 47799999997

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.63  E-value=0.083  Score=55.14  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=41.4

Q ss_pred             CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      +|.|..||+.+++++-...+...+..-.....+..+++|+.||.++.||..+++....
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~  509 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence            4789999999998775443332222222334567888899999999999999987554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.57  E-value=0.041  Score=58.36  Aligned_cols=151  Identities=12%  Similarity=0.062  Sum_probs=97.5

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceE
Q 012367          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  313 (465)
Q Consensus       234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~  313 (465)
                      +..++.++.|+.|..+|..+++............                                    .......++ 
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~------------------------------------~~~~~~~P~-  159 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK------------------------------------PYSITGAPR-  159 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS------------------------------------SCBCCSCCE-
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC------------------------------------cceecCCCE-
Confidence            4578888899999999999887665443211000                                    000000111 


Q ss_pred             EEEecCCCEEEEEe------CCCeEEEEeCCCCeEeEEecCC--C------------------------------ceEEE
Q 012367          314 DLAWSNSNYLLSCS------MDKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCV  355 (465)
Q Consensus       314 ~l~~s~~~~l~s~s------~DgtV~lWD~~~~~~l~~~~h~--~------------------------------~V~~i  355 (465)
                         +. ++.++.+.      .++.|..+|..+|+.+..+...  .                              ....+
T Consensus       160 ---v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~  235 (668)
T 1kv9_A          160 ---VV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM  235 (668)
T ss_dssp             ---EE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCE
T ss_pred             ---EE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccce
Confidence               01 34444443      2589999999999998887421  1                              01246


Q ss_pred             EEccCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEeccc---CC-------CCeEEEEEeeCCC--
Q 012367          356 QFNPIDDNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK--  404 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg-------------------~I~iwd~~~~~~~~~~~---~~-------~~V~sv~~spdg~--  404 (465)
                      ++.| ....++.++.++                   .|..+|..+++++-...   |.       ..+....+..+|+  
T Consensus       236 a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~  314 (668)
T 1kv9_A          236 AYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR  314 (668)
T ss_dssp             EEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             EEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence            7888 677888887665                   39999999998774222   22       2233334445775  


Q ss_pred             -EEEEEEcCCcEEEEEecCCcee
Q 012367          405 -GFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       405 -~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                       .+++++.+|.++++|..++++.
T Consensus       315 ~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          315 KVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEECCCCEEEEEECCCCCEe
Confidence             6899999999999999998875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.52  E-value=0.4  Score=47.18  Aligned_cols=116  Identities=9%  Similarity=-0.015  Sum_probs=78.2

Q ss_pred             cceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEE
Q 012367          310 GDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV  385 (465)
Q Consensus       310 ~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~  385 (465)
                      .....|++.+ .+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-.. .+.|...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            3556777775 34 55566677899999998655444443 34468899999945555555433 378888888764433


Q ss_pred             ec-ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367          386 DW-ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       386 ~~-~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                      .+ ...-...+.|+++|++..|+.+.. .+.|..+|+.+...
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            32 233357899999998877777654 67899999876544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.43  E-value=0.07  Score=53.34  Aligned_cols=113  Identities=7%  Similarity=0.048  Sum_probs=67.8

Q ss_pred             cceEEEEecCCCEEEEEeCC----Ce-EEEEeCCCCeE-eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          310 GDVLDLAWSNSNYLLSCSMD----KT-VRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~D----gt-V~lWD~~~~~~-l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      .....+++++++.|+.+...    .. +...+...+.. ...+..-.....++++|.+++++++-..++.|+.+|..++.
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~  261 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT  261 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence            45678999987645444432    12 33333221110 01222233456788888667777676677889999998776


Q ss_pred             E-Eec--ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367          384 V-VDW--ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG  422 (465)
Q Consensus       384 ~-~~~--~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~  422 (465)
                      + ..+  .+.......++|+|+|+.|+++. ..+.|+.++...
T Consensus       262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            5 222  12223345799999999665555 468899888763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.42  E-value=1.3  Score=47.39  Aligned_cols=198  Identities=7%  Similarity=0.084  Sum_probs=111.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC--CCceeEec-CCceeeec-
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK--SSHVPVVI-PDEVFQIE-  298 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~-  298 (465)
                      ..|.+|...++|..|-.|+.++-+..||..+............... ........+....  .....+.. ...++.+. 
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~-l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~  144 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQS-LITNDVTHITSSVQAGKGLWVCTYYRGIEYLDI  144 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSS-CSCSCEEEEEECSSTTSEEEEEESSSCEEEEET
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCC-cccCcceEEEecCccCCCEEEEECCCCeeEEEC
Confidence            4599999999887455677774589999887554322111000000 0000000111111  11111111 22233221 


Q ss_pred             -CCcceeee------ccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec--------CCCceEEEEEccCCCC
Q 012367          299 -ESPLQELH------GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDN  363 (465)
Q Consensus       299 -~~~~~~~~------gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~--------h~~~V~~i~fsp~~~~  363 (465)
                       ...+..+.      -....|.++...+++.|..++.++-|..||..+++......        ....|.++...+ +++
T Consensus       145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~  223 (781)
T 3v9f_A          145 ATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT-NGN  223 (781)
T ss_dssp             TTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECT-TCC
T ss_pred             CCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC-CCC
Confidence             11122221      11245888888778877778877679999988776533211        135699999887 776


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEeccc--------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          364 YFISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~--------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +.+. ..+ -|.+||..++....+..        ....|.++...++|. |.+|+..+-|.+|+..+..+
T Consensus       224 lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~  290 (781)
T 3v9f_A          224 IWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQF  290 (781)
T ss_dssp             EEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC--
T ss_pred             EEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCee
Confidence            6654 444 68999988877654321        245699998888774 66677756678888877654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.37  E-value=0.13  Score=47.45  Aligned_cols=116  Identities=12%  Similarity=0.232  Sum_probs=84.9

Q ss_pred             eeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEecC--CCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367          304 ELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~  379 (465)
                      .+.|-...+..++|+|+ + ++++...++.|...|+. ++.++.+..  ......|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            34455568999999985 4 45557778999999998 888888743  35688899988 7777777656788999987


Q ss_pred             CCCe---EEe---c----ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          380 CEKR---VVD---W----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       380 ~~~~---~~~---~----~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ....   .+.   +    ...+.....++|+|+++.|+++.......+|.+.
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            5432   111   1    1234456899999999888888887777777776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.30  E-value=0.46  Score=45.69  Aligned_cols=136  Identities=8%  Similarity=0.006  Sum_probs=86.2

Q ss_pred             cceEEEEecC-CCE-EEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          310 GDVLDLAWSN-SNY-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       310 ~~V~~l~~s~-~~~-l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      ..+..++|++ ++. +++-...+.|..+++........+. .-.....+++.+.+++++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3477899986 454 4455667899999998665433333 234567889988566677777777899999987654332


Q ss_pred             -cccCCCCeEEEEEeeCCCEEEEEEc-C-CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          387 -WADVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       387 -~~~~~~~V~sv~~spdg~~l~sgs~-d-G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                       ....-.....++++|.+..|+.... . +.|..+++.+.....  +. .    .....-.++.+.|.+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~-~----~~~~~PnGla~d~~~  214 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA-D----THLFWPNGLTIDYAG  214 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SC-C----SSCSCEEEEEEETTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EE-E----CCCCCcceEEEeCCC
Confidence             2233456799999996666555443 4 778888877643321  10 0    112345667776643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.29  E-value=0.089  Score=53.35  Aligned_cols=110  Identities=12%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             ceEEEEe-------cCCC-EEEEEeCCC-------eEEEEeCCC-C--------eEeEEecCCCceEEEEEccCCCCEEE
Q 012367          311 DVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-N--------QCLNVFDHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       311 ~V~~l~~-------s~~~-~l~s~s~Dg-------tV~lWD~~~-~--------~~l~~~~h~~~V~~i~fsp~~~~~l~  366 (465)
                      ....|+|       ++++ .|+.+...+       .|.+.+... +        ..+..+.|   ...++++|.++.+++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp~~g~LYv  263 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHPINGELYF  263 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECTTTCCEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcCCCCeEEE
Confidence            5678888       8765 455554443       366665433 1        22333333   356788996677777


Q ss_pred             EEeCCCcEEEEeCC-------CCeE--------------EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCC
Q 012367          367 SGSIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN  423 (465)
Q Consensus       367 sgs~Dg~I~iwd~~-------~~~~--------------~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~  423 (465)
                      +-..++.|..+|+.       ++.+              +...+.......++|+|+|+.|+++. ..+.|+.++....
T Consensus       264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence            77778889999987       5543              11223345678999999999655554 5678888776653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.27  E-value=0.16  Score=48.53  Aligned_cols=143  Identities=9%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             cccceEEEEecC-CCEEEEEe-CCCeEEEEeCCCCeEeEE-ecC-----C--CceEEEEE---ccCCCCEEEEEeC----
Q 012367          308 HKGDVLDLAWSN-SNYLLSCS-MDKTVRMWQVGCNQCLNV-FDH-----H--NYVTCVQF---NPIDDNYFISGSI----  370 (465)
Q Consensus       308 h~~~V~~l~~s~-~~~l~s~s-~DgtV~lWD~~~~~~l~~-~~h-----~--~~V~~i~f---sp~~~~~l~sgs~----  370 (465)
                      ......+++|++ ++.++.++ ..++|..||...+..... +..     .  ..+..|.|   .| +++++++...    
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence            334455789986 45555555 789999999986644333 322     1  14689999   68 6778776442    


Q ss_pred             ---------CCcEEEEeCC---CCeEEeccc--------------CCCCeEEEEEeeCCCEEEEEEcC-CcEEEEEecCC
Q 012367          371 ---------DGKVRIWGVC---EKRVVDWAD--------------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGN  423 (465)
Q Consensus       371 ---------Dg~I~iwd~~---~~~~~~~~~--------------~~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~~~~  423 (465)
                               ++.|..||+.   +++.+....              .......++..++|+..++++.. +.|..++..+.
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                     6789999999   666553222              11248899999999999999988 88776666655


Q ss_pred             ceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          424 DLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      ..  ..+.............+|+.+.|+|.
T Consensus       170 ~~--~~~~~~~~~~~~~~G~nGIv~~pdg~  197 (334)
T 2p9w_A          170 TV--STFAWESGNGGQRPGYSGITFDPHSN  197 (334)
T ss_dssp             CE--EEEEECCCCSSSCCSCSEEEEETTTT
T ss_pred             EE--eeeeecCCCcccccCcceEEEeCCCC
Confidence            33  23332222222234588999999874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.23  E-value=0.44  Score=51.36  Aligned_cols=115  Identities=10%  Similarity=-0.008  Sum_probs=77.4

Q ss_pred             ceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEe
Q 012367          311 DVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVD  386 (465)
Q Consensus       311 ~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~  386 (465)
                      ....|++.+.  .++++-...+.|.+.++........+. .-.....|++.|..+.++++-... +.|.+.++.......
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            4456777653  356677778899999997554433333 345689999999445555554333 678888887655444


Q ss_pred             cc-cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367          387 WA-DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       387 ~~-~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                      +. ..-...+.|+++|.+..|+.+.. .+.|..+++.+...
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            33 23367899999987777776654 56788888876544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.18  E-value=0.079  Score=52.89  Aligned_cols=135  Identities=13%  Similarity=0.059  Sum_probs=84.7

Q ss_pred             ceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-CC----cEEEEeCCCCe
Q 012367          311 DVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG----KVRIWGVCEKR  383 (465)
Q Consensus       311 ~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg----~I~iwd~~~~~  383 (465)
                      ....|+++|  ++.|+.+...+.|+.+|+..+..............|+|++ ++++|+.+.. ++    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            457889997  3666666555889999998877655555566789999999 8885555443 22    2333443 221


Q ss_pred             EE--ecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          384 VV--DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       384 ~~--~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      ..  ...........++++| +|..+++-..++.|..|+..+...... ....     ....-.++.|.|+|.
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~-----~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQ-----DSGWEFHIQFHPSGN  282 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECS-----SSSCCEEEEECTTSS
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcC-----CCCcceeEEEcCCCC
Confidence            11  1111234467788999 666666666788999999887654211 1111     113456788888876

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.18  E-value=0.024  Score=61.04  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=72.4

Q ss_pred             ceEEEEec-CCC-EEE-EEeCC----CeEEEEeCCCC-eEeEE-ecCCCceEEEEEccCCCCEEEEEeCC-----CcEEE
Q 012367          311 DVLDLAWS-NSN-YLL-SCSMD----KTVRMWQVGCN-QCLNV-FDHHNYVTCVQFNPIDDNYFISGSID-----GKVRI  376 (465)
Q Consensus       311 ~V~~l~~s-~~~-~l~-s~s~D----gtV~lWD~~~~-~~l~~-~~h~~~V~~i~fsp~~~~~l~sgs~D-----g~I~i  376 (465)
                      .+...+|+ |++ +|+ +.+.+    .+|+++|+.++ +.+.. +.  .....+.|+| +++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence            67789999 987 444 33333    35999999988 63211 11  1134678999 88877776665     35888


Q ss_pred             EeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCC
Q 012367          377 WGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGN  423 (465)
Q Consensus       377 wd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~  423 (465)
                      +++.++.    ++...........+.|+|||++|+..+.   ...|.++|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            8887653    2211123345678899999998887663   345777888765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.03  E-value=0.58  Score=44.43  Aligned_cols=115  Identities=8%  Similarity=-0.028  Sum_probs=73.4

Q ss_pred             ceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEe
Q 012367          311 DVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       311 ~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~  386 (465)
                      ....+++.+ ++ ++++-...+.|.++++........+ ..-.....|++.|..+.++++-. ..+.|...++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            345677765 34 5556666789999998754332233 34456789999994444444442 25788888876533222


Q ss_pred             c-ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCce
Q 012367          387 W-ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL  425 (465)
Q Consensus       387 ~-~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~  425 (465)
                      + ...-...+.++++|++..|+.+. ..+.|..+++.+...
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~  200 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  200 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence            2 22335678999999777766665 467899999876443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.95  E-value=0.73  Score=44.99  Aligned_cols=136  Identities=7%  Similarity=-0.017  Sum_probs=86.7

Q ss_pred             cceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          310 GDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       310 ~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      ..+..++|++ ++ ++++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4577899986 45 44555667899999998765444443 223557788888566666777777889999887554333


Q ss_pred             -cccCCCCeEEEEEeeCCCEEEEEEc-C-CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          387 -WADVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       387 -~~~~~~~V~sv~~spdg~~l~sgs~-d-G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                       ....-.....++++|.+..|+.... . +.|..+++.+......  . ..    ....-.++.+.|.+
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--~-~~----~~~~PnGlavd~~~  257 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--A-DT----HLFWPNGLTIDYAG  257 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--E-CS----SCSCEEEEEEEGGG
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE--E-EC----CCCCeeeEEEeCCC
Confidence             2233456899999997766665554 3 6788888776533221  1 11    12345677776653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.95  E-value=1.3  Score=43.04  Aligned_cols=195  Identities=7%  Similarity=-0.085  Sum_probs=104.8

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCC-CC--cccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          223 GCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDD-GG--FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       223 ~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      ..+..|+|++.+. ++.+-...+.|..+++............. ..  +......+.+.+.......+.....      .
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~------d  189 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL------D  189 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT------T
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC------C
Confidence            3477999997655 44555567889999987654322211111 00  1111112222222222221211111      1


Q ss_pred             CCcceee-eccccceEEEEecCC-CEEE-EEeCC-CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367          299 ESPLQEL-HGHKGDVLDLAWSNS-NYLL-SCSMD-KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (465)
Q Consensus       299 ~~~~~~~-~gh~~~V~~l~~s~~-~~l~-s~s~D-gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~  373 (465)
                      ......+ .........|++.|. +.|+ +-... +.|...++......... ..-.....|+|+|..++++++-+..+.
T Consensus       190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence            2222222 223356788999974 5444 44444 67888888643322222 233457899999845555666666788


Q ss_pred             EEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (465)
Q Consensus       374 I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~  424 (465)
                      |..+|+....... ..........+++ ..+..+++-...+.|..++..+++
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence            9999987543222 2223345677888 455555665567888888854443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.88  E-value=0.16  Score=53.60  Aligned_cols=98  Identities=11%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CCeEEEEeCCCCeEeEEec-CC---------CceEEEEEccCCCCEEEEEeCCC-----------cEEEEeCCCCeEEec
Q 012367          329 DKTVRMWQVGCNQCLNVFD-HH---------NYVTCVQFNPIDDNYFISGSIDG-----------KVRIWGVCEKRVVDW  387 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~-h~---------~~V~~i~fsp~~~~~l~sgs~Dg-----------~I~iwd~~~~~~~~~  387 (465)
                      ...+..||..+........ +.         ..-.++.|...++++++.|+.++           .|.+||..+......
T Consensus       368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  447 (656)
T 1k3i_A          368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF  447 (656)
T ss_dssp             SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred             ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence            3467889988776443332 11         12345555444788888888543           688899887765543


Q ss_pred             c--c-CCC-CeEEEEEeeCCCEEEEEEcC-----------CcEEEEEecCCcee
Q 012367          388 A--D-VRD-VISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLK  426 (465)
Q Consensus       388 ~--~-~~~-~V~sv~~spdg~~l~sgs~d-----------G~v~iwd~~~~~~~  426 (465)
                      .  . ... .-.+++..|+|+.+++|+.+           ..+.+||..+++..
T Consensus       448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~  501 (656)
T 1k3i_A          448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY  501 (656)
T ss_dssp             CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred             ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence            2  1 122 23455677899999999865           46899999876543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.88  E-value=0.11  Score=54.12  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=55.6

Q ss_pred             CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeE--EEEEeeCCCE
Q 012367          328 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGKG  405 (465)
Q Consensus       328 ~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~--sv~~spdg~~  405 (465)
                      .++.|..||+.+++.+..+.+..++..-.... .+.+++.|+.|+.++.||..+++++........+.  -+.|..+|+.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            46899999999999988876444333222222 46678889999999999999999886444333333  3667788864


Q ss_pred             EEE
Q 012367          406 FIV  408 (465)
Q Consensus       406 l~s  408 (465)
                      .++
T Consensus       543 Yv~  545 (582)
T 1flg_A          543 YLG  545 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.83  E-value=1.3  Score=41.80  Aligned_cols=116  Identities=14%  Similarity=0.026  Sum_probs=75.0

Q ss_pred             cceEEEEecCC-C-EEEEEeCCCeEEEEeCCC---CeEeE-Eec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          310 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLN-VFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       310 ~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~---~~~l~-~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      ..+..++|++. + .+++-...+.|..+++..   +.... .+. .-..+..+++.+.+++++++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            45678999874 5 445556678999999876   12222 232 22456789998745666667677889999998765


Q ss_pred             eEEecc-cCCCCeEEEEEeeCCCEEEEEEcC--CcEEEEEecCCce
Q 012367          383 RVVDWA-DVRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDL  425 (465)
Q Consensus       383 ~~~~~~-~~~~~V~sv~~spdg~~l~sgs~d--G~v~iwd~~~~~~  425 (465)
                      ....+. ..-.....++++|.+..|+.+...  +.|..+++.+...
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~  155 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence            443322 234568999999976666555542  6788888776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.80  E-value=0.65  Score=44.90  Aligned_cols=91  Identities=18%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             CCeEEEEeCCCC--e--EeEEecC--CCceEEEEEccCCCCEEEEEeC-----------------CCcEEEEeCCCCeEE
Q 012367          329 DKTVRMWQVGCN--Q--CLNVFDH--HNYVTCVQFNPIDDNYFISGSI-----------------DGKVRIWGVCEKRVV  385 (465)
Q Consensus       329 DgtV~lWD~~~~--~--~l~~~~h--~~~V~~i~fsp~~~~~l~sgs~-----------------Dg~I~iwd~~~~~~~  385 (465)
                      +.+|.+|++..+  .  .+..+.+  -...+.+.+.+ ++.+.++...                 .|.|.-+|.  +++.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE
Confidence            467888776542  2  2333433  23678999999 8888887641                 244555554  3333


Q ss_pred             ecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367          386 DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG  422 (465)
Q Consensus       386 ~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~  422 (465)
                      .....-...+.++|+||++.|+++. ..+.|..|++..
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            3333345678999999998887766 478999999974

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.54  E-value=0.12  Score=51.04  Aligned_cols=118  Identities=12%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             CCeEEEEeCCCCeEeEEecCC-----CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-------------E--Eecc
Q 012367          329 DKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-------------V--VDWA  388 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~h~-----~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-------------~--~~~~  388 (465)
                      ++.||.-++.....-+.+...     ..|..+..+| +|++++..+ +..|.|-.+..+.             +  ....
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            477888887744444444332     2578899999 999999887 5689999887321             1  1111


Q ss_pred             c----CCCCeEEEEEeeC---CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc-----cCCceeeEEEee
Q 012367          389 D----VRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-----SGNKITGIQGRI  450 (465)
Q Consensus       389 ~----~~~~V~sv~~spd---g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~It~~~f~p  450 (465)
                      .    ....|..+.|||-   +..|++-+.|+.|++||+....-...  .+......     ....|.++.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EESCCCSEEESCSSCCCEEEEEECT
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chhccccccCCCcccceEEEEEEcC
Confidence            1    2467999999994   56899999999999999986322111  22211111     125677888876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.49  E-value=0.4  Score=49.64  Aligned_cols=108  Identities=10%  Similarity=-0.049  Sum_probs=70.3

Q ss_pred             CCEEEEEeC------CCeEEEEeCCCCeEeEEecCCCce---------------------------------------EE
Q 012367          320 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  354 (465)
Q Consensus       320 ~~~l~s~s~------DgtV~lWD~~~~~~l~~~~h~~~V---------------------------------------~~  354 (465)
                      ++.++.++.      ++.|..+|..+++.+..+......                                       ..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            355555554      789999999999998887532211                                       13


Q ss_pred             EEEccCCCCEEEEEeCC----------------CcEEEEeCCCCeEEeccc---CC-------CCeEEEEEeeCCC---E
Q 012367          355 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G  405 (465)
Q Consensus       355 i~fsp~~~~~l~sgs~D----------------g~I~iwd~~~~~~~~~~~---~~-------~~V~sv~~spdg~---~  405 (465)
                      +++.| ....++.+..+                +.|..+|..+++.+-...   |.       ....-+...++|+   .
T Consensus       240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence            55666 44555555432                359999999998764221   11       1112233335784   6


Q ss_pred             EEEEEcCCcEEEEEecCCceeee
Q 012367          406 FIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       406 l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ++.++.+|.++++|..++++...
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~  341 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEeCCCcEEEEEECCCCCEEee
Confidence            77889999999999999877543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.36  E-value=1.4  Score=46.02  Aligned_cols=158  Identities=6%  Similarity=-0.070  Sum_probs=98.5

Q ss_pred             CcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          223 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       223 ~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      ..+..|+|++.+..|+ +-..++.|..+++.......                                           
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------------------------------   73 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------------------------------   73 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------------------------------
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------------------------------
Confidence            3577999998655544 54567888888776421110                                           


Q ss_pred             ceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe-CCCcEEEE
Q 012367          302 LQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW  377 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw  377 (465)
                        .+.........|++.+  ++++++-...+.|.+.++........+ ..-.....|++.|..+.++.+-. ..+.|...
T Consensus        74 --v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~  151 (628)
T 4a0p_A           74 --VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA  151 (628)
T ss_dssp             --EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             --EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence              0000112344566654  335566666788999998654332223 33456789999995555555542 25678888


Q ss_pred             eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367          378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       378 d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                      ++.......+...-.....|+++++++.|+.+.. .+.|..+++.+...
T Consensus       152 ~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          152 AMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             ETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            8766544443344567899999998777776654 67888888877554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.29  E-value=1.3  Score=41.87  Aligned_cols=110  Identities=14%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             ccceEEEEecCCCEEEEEeCCCeE-EEEeC--CCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTV-RMWQV--GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV-~lWD~--~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~  385 (465)
                      ...+..+++.+++.++..+.++.+ +-+|-  .+-+.+ .......+..+.+.| ++.+++. +.+|.+++++...+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~~~-~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLWMI-VNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEEEE-ETTTEEEEEETTEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEEEE-eCCceEEEecCCCCCee
Confidence            346778888887655555555544 44443  222222 223556788999988 7776654 45788877743323322


Q ss_pred             e-cc----cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367          386 D-WA----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       386 ~-~~----~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~  423 (465)
                      . ..    .....+.++++.|++..++++ .+|.+ ++..+.+
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG  279 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG  279 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTT
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCC
Confidence            2 11    122358899999887766665 47766 4444433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.22  E-value=0.21  Score=49.83  Aligned_cols=137  Identities=9%  Similarity=0.010  Sum_probs=83.3

Q ss_pred             ceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---Cc-EEEEeCCCCe
Q 012367          311 DVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GK-VRIWGVCEKR  383 (465)
Q Consensus       311 ~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g~-I~iwd~~~~~  383 (465)
                      ....++|+|+   +.|+.+...+.|+.+|+.++..............++|++ +++++++....   .. +...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999984   666666555899999998888766666566789999999 88865554421   11 3333322211


Q ss_pred             E-EecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          384 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       384 ~-~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                      . ............++++| +|.+.++-..++.|+.++..++...........     ...-.++.|+|++.
T Consensus       219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGD  285 (433)
T ss_dssp             CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSS
T ss_pred             eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCC
Confidence            1 01111234467788999 666555555678899999876655221111111     11223688888876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.21  E-value=0.41  Score=49.84  Aligned_cols=100  Identities=10%  Similarity=-0.041  Sum_probs=67.3

Q ss_pred             CCCeEEEEeCCCCeEeEEecCCCce---------------------------------------EEEEEccCCCCEEEEE
Q 012367          328 MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TCVQFNPIDDNYFISG  368 (465)
Q Consensus       328 ~DgtV~lWD~~~~~~l~~~~h~~~V---------------------------------------~~i~fsp~~~~~l~sg  368 (465)
                      .++.|+.+|..+|+.+..+......                                       ..+++.+ ....++.+
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g  258 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG  258 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence            3799999999999999887533221                                       1345566 56666666


Q ss_pred             eCC----------------CcEEEEeCCCCeEEecc---cCCC-------CeEEEEEe-eCC---CEEEEEEcCCcEEEE
Q 012367          369 SID----------------GKVRIWGVCEKRVVDWA---DVRD-------VISAICYI-PDG---KGFIVGSITGTCHFY  418 (465)
Q Consensus       369 s~D----------------g~I~iwd~~~~~~~~~~---~~~~-------~V~sv~~s-pdg---~~l~sgs~dG~v~iw  418 (465)
                      ..+                +.|..+|..+++++-..   .|..       ...-+... .+|   +.++.++.+|.++++
T Consensus       259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence            554                37999999999876421   1211       11112222 467   467788999999999


Q ss_pred             EecCCceeee
Q 012367          419 KASGNDLKLE  428 (465)
Q Consensus       419 d~~~~~~~~~  428 (465)
                      |..++++...
T Consensus       339 D~~tG~~lw~  348 (599)
T 1w6s_A          339 DRTDGALVSA  348 (599)
T ss_dssp             ETTTCCEEEE
T ss_pred             ECCCCCEeec
Confidence            9999887554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.98  E-value=3.2  Score=46.67  Aligned_cols=111  Identities=9%  Similarity=0.117  Sum_probs=74.9

Q ss_pred             cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe--EEecCCCceEEEEEccCC-----CCEEEEEeC-CCcEEEEeCCC
Q 012367          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL--NVFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCE  381 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l--~~~~h~~~V~~i~fsp~~-----~~~l~sgs~-Dg~I~iwd~~~  381 (465)
                      ..|...+.+. .+++.++ ++.+.++.+..++..  ........|.|+++.|..     .++++.|.. |++|+|+++.+
T Consensus       514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            3566666544 4555554 578888887765432  223456789999998732     479999997 99999999988


Q ss_pred             CeEEecccC--CCCeEEEEEee--CCCEEEEEEcCCcEEEEEecC
Q 012367          382 KRVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       382 ~~~~~~~~~--~~~V~sv~~sp--dg~~l~sgs~dG~v~iwd~~~  422 (465)
                      .+.+.....  .....++++..  ...+|.+|-.||.+.-+.++.
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~  636 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI  636 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence            666553333  23556665543  335789999999987777653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.95  E-value=1.5  Score=43.89  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=22.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS  253 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~  253 (465)
                      -..-+.|+|.|+|+++++-...+.|++++..+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence            34567999999999777755445677776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.82  E-value=3  Score=39.99  Aligned_cols=56  Identities=7%  Similarity=-0.027  Sum_probs=33.0

Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee---eEeeecCcccccCCceeeEEEeecC
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL---EKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      .....++| .+|..+++.-..+.|...++.+.....   ....+-    ....+++++.+.|+|
T Consensus       268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~----~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL----SGFGRLREVQVGPDG  326 (352)
T ss_dssp             CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE----ESSCCEEEEEECTTS
T ss_pred             CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec----ccCCCeeEEEECCCC
Confidence            34667777 567666665566778777776443211   011111    123578999999887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.80  E-value=3.3  Score=40.46  Aligned_cols=117  Identities=15%  Similarity=0.016  Sum_probs=78.6

Q ss_pred             ccceEEEEecC-CCE-EEEEeCCCeEEEEeCCCC----eEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367          309 KGDVLDLAWSN-SNY-LLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (465)
Q Consensus       309 ~~~V~~l~~s~-~~~-l~s~s~DgtV~lWD~~~~----~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~  381 (465)
                      ...+..|+|++ ++. +++-...+.|+.+++...    .....+. .-.....+++.+..++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678899987 454 445556788999998752    2223333 3446788999885677777777788999999987


Q ss_pred             CeEEec-ccCCCCeEEEEEeeCCCEEEEEEc--CCcEEEEEecCCce
Q 012367          382 KRVVDW-ADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDL  425 (465)
Q Consensus       382 ~~~~~~-~~~~~~V~sv~~spdg~~l~sgs~--dG~v~iwd~~~~~~  425 (465)
                      .....+ ...-.....|+++|.+..|+....  .+.|...++.+...
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            654443 234456899999997666666553  47888888876543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.80  E-value=1.2  Score=42.82  Aligned_cols=151  Identities=13%  Similarity=0.137  Sum_probs=83.6

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      .+..--..-+.|+|.|+|.++++--..|.|++++...+........                                  
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~----------------------------------   71 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV----------------------------------   71 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------------------
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc----------------------------------
Confidence            3334445678999999999887776589998887554322100000                                  


Q ss_pred             ecCCcceeeeccccceEEEEecCC----CEEEEE---eCCCeEEEEeCCCC----------eEe-EEec--CCCceEEEE
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCVQ  356 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~----~~l~s~---s~DgtV~lWD~~~~----------~~l-~~~~--h~~~V~~i~  356 (465)
                          + ..+.........|+++|+    +.|...   ..+..|.-|.+..+          +.+ ..+.  ..+.-..|.
T Consensus        72 ----~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~  146 (347)
T 3das_A           72 ----P-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIA  146 (347)
T ss_dssp             ----T-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEE
T ss_pred             ----C-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcccc
Confidence                0 001123456788999984    544432   23455655655431          111 2221  223456799


Q ss_pred             EccCCCCEEEEEeC-------------CCcEEEEeCCCC---------eEEecccCCCCeEEEEEeeCCCEEEE
Q 012367          357 FNPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIV  408 (465)
Q Consensus       357 fsp~~~~~l~sgs~-------------Dg~I~iwd~~~~---------~~~~~~~~~~~V~sv~~spdg~~l~s  408 (465)
                      |.| ++.++++.+.             -|+|.-.+....         ..+...+|. ....++|+|+|.+.++
T Consensus       147 fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          147 FGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             ECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             CCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence            999 8888777542             244444454322         111222333 3567899998765554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.68  E-value=0.21  Score=44.74  Aligned_cols=102  Identities=13%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             eEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe------EEecC--CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL------NVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       312 V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l------~~~~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      -.++.|.|++.|..+ .||.|.-++-.+....      ..+..  =..+.+|.|.| ++.+.+..  |+.++-+...++.
T Consensus        90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~  165 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN  165 (236)
T ss_dssp             CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred             ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence            467888899877776 6699988886432111      11211  13579999999 99888776  7776544444322


Q ss_pred             EEecc--------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          384 VVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       384 ~~~~~--------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      -..+.        ..-..-+-+.|.|+|...++.  +|  ++|...
T Consensus       166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEES
T ss_pred             CcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecC
Confidence            11111        222234557788888776665  66  455543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.22  E-value=0.058  Score=48.38  Aligned_cols=99  Identities=10%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeE------eEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC------LNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~------l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                      .+.+++|+|++.|.+. .+|.+.-.+..+...      -..+....  .-.++.|.| ++.+.++  .||.|+-++-.+.
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence            6679999999877777 778777777655222      12221111  147889999 8888887  5699988887543


Q ss_pred             eEEeccc--------CCCCeEEEEEeeCCCEEEEEEcCCcE
Q 012367          383 RVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTC  415 (465)
Q Consensus       383 ~~~~~~~--------~~~~V~sv~~spdg~~l~sgs~dG~v  415 (465)
                      ....|..        .=..+..|.+.|+|.+.++.  ||.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            2222211        11357999999999777766  8874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.15  E-value=3.6  Score=39.51  Aligned_cols=125  Identities=10%  Similarity=0.143  Sum_probs=80.7

Q ss_pred             eeeecCCcceeeeccccceEEEEecCC----C----EEE-EEeC--CCeEEEEeC--CCCeEeEEecC-------C-Cce
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNS----N----YLL-SCSM--DKTVRMWQV--GCNQCLNVFDH-------H-NYV  352 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~----~----~l~-s~s~--DgtV~lWD~--~~~~~l~~~~h-------~-~~V  352 (465)
                      +|++.++.++.+..  +.++.+..-|+    +    +++ +.-.  +.+|++|++  .++. +..+..       . ..+
T Consensus        54 Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~p  130 (355)
T 3amr_A           54 VYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEV  130 (355)
T ss_dssp             EEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSC
T ss_pred             EEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCe
Confidence            45555566666543  34444444431    1    223 3333  579999966  4443 555522       1 456


Q ss_pred             EEEEE--ccCCCC-EEEEEeCCCcEEEEeCC-------CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          353 TCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       353 ~~i~f--sp~~~~-~l~sgs~Dg~I~iwd~~-------~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ..+|+  +|..+. |++....+|.+..|++.       +.+++........+..+...+....|+++-.+.-|..|+..
T Consensus       131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            67777  774454 68888889999999982       33556656667789999999999999999998666555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.12  E-value=0.35  Score=50.86  Aligned_cols=112  Identities=14%  Similarity=0.234  Sum_probs=74.2

Q ss_pred             EEEecC-CC-EEEEEeCCC-----------eEEEEeCCCCeE--eEEec--CCCceEEEEEccCCCCEEEEEeC-CCcEE
Q 012367          314 DLAWSN-SN-YLLSCSMDK-----------TVRMWQVGCNQC--LNVFD--HHNYVTCVQFNPIDDNYFISGSI-DGKVR  375 (465)
Q Consensus       314 ~l~~s~-~~-~l~s~s~Dg-----------tV~lWD~~~~~~--l~~~~--h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~  375 (465)
                      ..++.+ ++ +++.|+.+.           .+.+||..+++.  +..+.  +.....++++.+ ++.+++.|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence            345555 55 566666542           689999988753  22332  333444567777 8999999984 46899


Q ss_pred             EEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEE-cC-----CcEEEEEecCCcee
Q 012367          376 IWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGS-IT-----GTCHFYKASGNDLK  426 (465)
Q Consensus       376 iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs-~d-----G~v~iwd~~~~~~~  426 (465)
                      +||..+.+.......  ...-.+++..++|+.++.|+ .+     ..+.+||..+++..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            999988776553322  12224556678999999998 44     56899999877643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.04  E-value=1.6  Score=42.02  Aligned_cols=100  Identities=13%  Similarity=0.108  Sum_probs=63.2

Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-EeEEec----CCCceEEEEEccCC----CCEEEEEeC---C----C
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID----DNYFISGSI---D----G  372 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~l~~~~----h~~~V~~i~fsp~~----~~~l~sgs~---D----g  372 (465)
                      -.....|+|.|++.|+.+..++.|+++|. ++. .+..+.    .......|+|+| +    +.++++-+.   +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence            34567899999988888888899999973 454 222211    234688999999 5    455554442   3    5


Q ss_pred             cEEEEeCCCC-------e-EEe-cc-cCCCCeEEEEEeeCCCEEEEEE
Q 012367          373 KVRIWGVCEK-------R-VVD-WA-DVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       373 ~I~iwd~~~~-------~-~~~-~~-~~~~~V~sv~~spdg~~l~sgs  410 (465)
                      .|..|+....       + ++. +. ........++|.|||.+.++-+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            6777776543       1 111 11 1122357799999998666643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.99  E-value=0.8  Score=44.15  Aligned_cols=141  Identities=14%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (465)
                      ..-+.|+|.|+|+++++ ..+|.|++++. .+. .... .                                     .+ 
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~-~-------------------------------------~~-   66 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVA-S-------------------------------------FD-   66 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEE-E-------------------------------------CC-
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEee-c-------------------------------------cc-
Confidence            44689999999985554 56698988863 222 1000 0                                     00 


Q ss_pred             eeeeccccceEEEEecCC----CEEEEEeC----C----CeEEEEeCCCC-------eEe-EEec--CCCceEEEEEccC
Q 012367          303 QELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNPI  360 (465)
Q Consensus       303 ~~~~gh~~~V~~l~~s~~----~~l~s~s~----D----gtV~lWD~~~~-------~~l-~~~~--h~~~V~~i~fsp~  360 (465)
                       ...........|+++|+    +.|+.+..    +    ..|..|+....       +.+ ..+.  .......|+|.| 
T Consensus        67 -v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-  144 (354)
T 3a9g_A           67 -VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-  144 (354)
T ss_dssp             -CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-
T ss_pred             -eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-
Confidence             00111245678899986    55544332    3    56777776543       111 1122  122356799999 


Q ss_pred             CCCEEEEEeC-------------CCcEEEEeCCCC---------eEEecccCCCCeEEEEEee-CCCEEEE
Q 012367          361 DDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIP-DGKGFIV  408 (465)
Q Consensus       361 ~~~~l~sgs~-------------Dg~I~iwd~~~~---------~~~~~~~~~~~V~sv~~sp-dg~~l~s  408 (465)
                      ++.++++.+.             .|+|.-++....         ..+...++ .....++|+| +|..+++
T Consensus       145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEE
T ss_pred             CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEE
Confidence            8887777542             245555554332         01112223 2356799999 5655444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.93  E-value=1.2  Score=43.88  Aligned_cols=107  Identities=15%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCe------------EeEEec-------CCCceEEEEEccC--CCCEEEEEe
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ------------CLNVFD-------HHNYVTCVQFNPI--DDNYFISGS  369 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~------------~l~~~~-------h~~~V~~i~fsp~--~~~~l~sgs  369 (465)
                      .|..+..+|+|.+++-..+.+|.|-.+..+.            ..+.+.       ....|..+.|||.  .+..|++-.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            5677889999877777788899999886321            122332       2467999999994  345899999


Q ss_pred             CCCcEEEEeCCCC--eEEec---------ccCCCCeEEEEEeeCCCEEEEEE--cCCcEEE
Q 012367          370 IDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIPDGKGFIVGS--ITGTCHF  417 (465)
Q Consensus       370 ~Dg~I~iwd~~~~--~~~~~---------~~~~~~V~sv~~spdg~~l~sgs--~dG~v~i  417 (465)
                      .|+.||+||+...  ....+         ......|.++||.++|-.|.+.+  ..|-|+-
T Consensus       147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            9999999999752  11111         11225689999999888788866  6676653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.85  E-value=1.6  Score=41.88  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=62.1

Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeE--eEEec----CCCceEEEEEccCC----CCEEEEEeCC-----Cc
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC--LNVFD----HHNYVTCVQFNPID----DNYFISGSID-----GK  373 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~--l~~~~----h~~~V~~i~fsp~~----~~~l~sgs~D-----g~  373 (465)
                      -.....|+|.|++.|+.+..++.|++++  ++..  +..+.    .......|+|+| +    +.++++-...     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence            3456789999998777777889999998  4432  22111    234688999999 6    4444444432     56


Q ss_pred             EEEEeCCCCe------EEe-cc---cCCCCeEEEEEeeCCCEEEEE
Q 012367          374 VRIWGVCEKR------VVD-WA---DVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       374 I~iwd~~~~~------~~~-~~---~~~~~V~sv~~spdg~~l~sg  409 (465)
                      |..|+.....      ++. +.   ........++|.|||...++-
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            8888876431      222 21   112235789999999766554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.79  E-value=1  Score=43.40  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=22.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVT  252 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~  252 (465)
                      ..-+.|+|.|+|++|+.+...|.|++++..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            346899999999933444567989888743

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.77  E-value=0.48  Score=50.38  Aligned_cols=114  Identities=5%  Similarity=-0.023  Sum_probs=67.3

Q ss_pred             cceEEEEecCC-CEEEEEe-CC-CeEEEEeCCCCeEeEEe-c-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          310 GDVLDLAWSNS-NYLLSCS-MD-KTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       310 ~~V~~l~~s~~-~~l~s~s-~D-gtV~lWD~~~~~~l~~~-~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                      .....|++.|. ++|+.+. .. +.|.++++.... ...+ . .-.....|+|+|..++++++-+..+.|.++++.....
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~  574 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  574 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce
Confidence            34567888874 5444333 22 678777775332 2222 1 2335678999995566777767778899999875433


Q ss_pred             Eeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          385 VDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       385 ~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ..+..   .......|++..+ .++++....+.|..++..+++.
T Consensus       575 ~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          575 KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            32221   2233445566543 3444555578899998765543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.41  E-value=1.5  Score=44.31  Aligned_cols=137  Identities=12%  Similarity=0.038  Sum_probs=83.3

Q ss_pred             ceEEEEecCC--CEEEEE-eCCCeEEEEeCCCCeEeEEecC----CCceEEEEE-------ccCCCCEEEEEeCCC----
Q 012367          311 DVLDLAWSNS--NYLLSC-SMDKTVRMWQVGCNQCLNVFDH----HNYVTCVQF-------NPIDDNYFISGSIDG----  372 (465)
Q Consensus       311 ~V~~l~~s~~--~~l~s~-s~DgtV~lWD~~~~~~l~~~~h----~~~V~~i~f-------sp~~~~~l~sgs~Dg----  372 (465)
                      ....|++.|.  +.|+.+ ...+.|++.|+..+........    ......|+|       ++ ++++++.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            4568899983  444444 4457799999998877665532    235899999       99 888666655443    


Q ss_pred             ---cEEEEeCCC-CeEE------ecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEec-------CCce-----e---
Q 012367          373 ---KVRIWGVCE-KRVV------DWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKAS-------GNDL-----K---  426 (465)
Q Consensus       373 ---~I~iwd~~~-~~~~------~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~-------~~~~-----~---  426 (465)
                         .|.+++... +...      .+.. -.....++.+|++..| ++-..+|.|..||+.       ++.+     +   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               266675433 2221      1111 2245678899955554 455567889999997       5554     0   


Q ss_pred             --eeEeeecCcccccCCceeeEEEeecCC
Q 012367          427 --LEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       427 --~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                        +.++....    ....-.++.|+|+|.
T Consensus       298 g~~~~l~~~~----~~~~p~~ia~~p~G~  322 (496)
T 3kya_A          298 NTFKQLFTIA----DPSWEFQIFIHPTGK  322 (496)
T ss_dssp             TTEEEEEECS----SSSCCEEEEECTTSS
T ss_pred             cccceeEecC----CCCCceEEEEcCCCC
Confidence              12221111    123457899999987

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.41  E-value=4.6  Score=42.03  Aligned_cols=116  Identities=8%  Similarity=-0.042  Sum_probs=74.5

Q ss_pred             cceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEE
Q 012367          310 GDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV  385 (465)
Q Consensus       310 ~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~  385 (465)
                      .....|++.+ ++ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++-.. .+.|...++......
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            3567788876 34 5556667789999999754433333 344467889999944555555422 356777776644332


Q ss_pred             ec-ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367          386 DW-ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       386 ~~-~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                      .+ ...-...+.|+++|+++.|+.+.. .+.|..+++.+...
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~  205 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  205 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence            22 223456889999997776666654 57888888876544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=93.02  E-value=3.7  Score=44.11  Aligned_cols=121  Identities=16%  Similarity=0.024  Sum_probs=79.8

Q ss_pred             eeccccceEEEEecC-CC-EEEEEeCCCeEEEEeCCCC----eEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367          305 LHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~----~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw  377 (465)
                      +......+..|+|.+ .+ ++++-...+.|+.+++...    .....+. .-.....|++.+..++++++-...+.|.+.
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence            333455677889987 45 4556666788999998753    2223333 344677899988556777777778899999


Q ss_pred             eCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEc-C-CcEEEEEecCCce
Q 012367          378 GVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDL  425 (465)
Q Consensus       378 d~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~-d-G~v~iwd~~~~~~  425 (465)
                      ++.......+. ..-.....|+++|.+..|+.... . +.|...++.+...
T Consensus       499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~  549 (791)
T 3m0c_C          499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  549 (791)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence            99866544433 34456899999998666666553 2 6788888876544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=92.96  E-value=6.2  Score=37.15  Aligned_cols=114  Identities=4%  Similarity=-0.083  Sum_probs=69.5

Q ss_pred             cceEEEEecCC-CEEEEEe--CCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367          310 GDVLDLAWSNS-NYLLSCS--MDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (465)
Q Consensus       310 ~~V~~l~~s~~-~~l~s~s--~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~  384 (465)
                      .....+++.|. +.|+.+.  ..+.|...++... ....+  ..-.....|+++|.+++++++-+..+.|..+|+.....
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~  200 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  200 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence            34567888874 5555444  2577888887632 22333  22345789999994455555555678899999875332


Q ss_pred             Eec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          385 VDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       385 ~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      ..+ .+.......+++. .+..+.+-...+.|..++..+++.
T Consensus       201 ~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          201 QAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            222 2234456777775 334455555578898898865543

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=91.94  E-value=0.0065  Score=45.51  Aligned_cols=64  Identities=17%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             cccccccCCccceeccccccccCcceeeeecccc-cCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhccc
Q 012367          104 NCFDREMDSEANCMVDELEQDQMNECVVTLEGES-NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNV  177 (465)
Q Consensus       104 ~~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  177 (465)
                      ..+.|+.++++++|++||...+..+.+.++..+. ....+...      .+    ....++++|..++|++++.+
T Consensus         4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~------~k----y~gLLEKKWTSViRLQKKIm   68 (88)
T 1uuj_A            4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELD------KK----YAGLLEKKWTSVIRLQKKVM   68 (88)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHH------HH----HTTHHHHHHTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhh------hh----hhhhhhhhHHHHHHHHHHHH
Confidence            4678999999999999999988888887777664 22111100      02    23456666666666665543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.33  E-value=5.9  Score=39.45  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             ccceEEEEecCCCEEEEEeCCC-eEEEEeCCCCeEe--EEec-------CCCceEEEEEccC---CCCEEEEEeC-----
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDK-TVRMWQVGCNQCL--NVFD-------HHNYVTCVQFNPI---DDNYFISGSI-----  370 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg-tV~lWD~~~~~~l--~~~~-------h~~~V~~i~fsp~---~~~~l~sgs~-----  370 (465)
                      -.....|+|.|++.|+.+...+ .|++++..++...  ..+.       ....+..|+|+|.   ++.+.++-+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            3456799999998666667765 7998887655432  2232       1345679999993   3444444332     


Q ss_pred             -------CCcEEEEeCCCC--e------EEe-cc-cCCCCeEEEEEeeCCCEEEEEEc
Q 012367          371 -------DGKVRIWGVCEK--R------VVD-WA-DVRDVISAICYIPDGKGFIVGSI  411 (465)
Q Consensus       371 -------Dg~I~iwd~~~~--~------~~~-~~-~~~~~V~sv~~spdg~~l~sgs~  411 (465)
                             ...|.-|+....  .      ++. +. ........|+|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   134555554321  1      111 11 12345789999999987766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=91.29  E-value=15  Score=38.05  Aligned_cols=115  Identities=8%  Similarity=-0.024  Sum_probs=73.4

Q ss_pred             ceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEEe
Q 012367          311 DVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD  386 (465)
Q Consensus       311 ~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~~  386 (465)
                      .+..|++.. + +++++-+..+.|.+.++........+. .-.....|++.|..+.++++-.. ...|...++.......
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~  472 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV  472 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE
Confidence            445667664 3 456666677899999987543322222 34568999999945666665432 3567777765432222


Q ss_pred             -cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367          387 -WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       387 -~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                       ....-...+.|++++++..|+.+.. .+.|..+++.+...
T Consensus       473 l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~  513 (619)
T 3s94_A          473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR  513 (619)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred             EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence             2233457889999997777777665 57788888876554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.20  E-value=9.6  Score=36.46  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=63.2

Q ss_pred             ccccceEEEEecCCCEEEEEeC-CCeEEEEeCCCCeEe--EEe-----cCCCceEEEEEccC---CCCEEEEEe--CCCc
Q 012367          307 GHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCL--NVF-----DHHNYVTCVQFNPI---DDNYFISGS--IDGK  373 (465)
Q Consensus       307 gh~~~V~~l~~s~~~~l~s~s~-DgtV~lWD~~~~~~l--~~~-----~h~~~V~~i~fsp~---~~~~l~sgs--~Dg~  373 (465)
                      ..-.....|+|.|++.++.+.. .|.|++++...+...  ..+     ........|+|+|.   ++.+.++-+  .++.
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3445678999999886666666 899999987665532  222     12446789999982   244444432  3445


Q ss_pred             EEEEeCCC----------CeE-Ee-cc-cCCCCeEEEEEeeCCCEEEEEE
Q 012367          374 VRIWGVCE----------KRV-VD-WA-DVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       374 I~iwd~~~----------~~~-~~-~~-~~~~~V~sv~~spdg~~l~sgs  410 (465)
                      |.-|.+..          .+. +. +. ........|+|.|||.+.++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            55565543          111 11 11 1233457799999998766644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.18  E-value=16  Score=41.08  Aligned_cols=111  Identities=18%  Similarity=0.236  Sum_probs=72.7

Q ss_pred             cccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEE-ecCCCceEEEEEccCCCCEEEEEeCCCcEEEE--eCCCCeE
Q 012367          308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW--GVCEKRV  384 (465)
Q Consensus       308 h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~-~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw--d~~~~~~  384 (465)
                      ..+.|++++--. |+|++|- .++|++|++...+.++. ..+...|..+.... .+++++.|..-..|.++  +....++
T Consensus       884 v~g~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L  960 (1158)
T 3ei3_A          884 VKGAVYSMVEFN-GKLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNF  960 (1158)
T ss_dssp             ESSCEEEEEEET-TEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEE
T ss_pred             cCCcCEEEeeeC-CEEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeE
Confidence            357788887554 4555554 47899999987654442 12222233222222 57889999887777765  4445555


Q ss_pred             Eecc--cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          385 VDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       385 ~~~~--~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ..+.  ....+++++.+-.++ .++.+..+|++.++....
T Consensus       961 ~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          961 EEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            5433  356678999887654 778899999999998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=90.82  E-value=2.8  Score=44.42  Aligned_cols=113  Identities=10%  Similarity=-0.004  Sum_probs=70.7

Q ss_pred             eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEec
Q 012367          312 VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVDW  387 (465)
Q Consensus       312 V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~  387 (465)
                      ...|++.+ .+ ++++-...+.|.+.++........+. .......|++.|..+.++++-... +.|.++++.......+
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            44567663 33 55555667899999987554443333 234567889998455555554333 6788887754332222


Q ss_pred             -ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCc
Q 012367          388 -ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND  424 (465)
Q Consensus       388 -~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~  424 (465)
                       ...-...+.|+|+|++..|+.+. ..+.|..+++.+..
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence             22234577899999866655554 56789999987643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.28  E-value=0.35  Score=46.44  Aligned_cols=109  Identities=8%  Similarity=-0.001  Sum_probs=69.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEc--cCCCCEEEEE-eCCCcEEEEeCCCCeEEeccc-----
Q 012367          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFN--PIDDNYFISG-SIDGKVRIWGVCEKRVVDWAD-----  389 (465)
Q Consensus       320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fs--p~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~-----  389 (465)
                      ++.++.++.||.|.-.|..+|+.+..+...  .++....-.  +.++..++.. +.||.|..++..++.......     
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            468999999999999999999999999654  233222111  1122333333 579999999998874432111     


Q ss_pred             CCCCeEE---EEE-e----eCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          390 VRDVISA---ICY-I----PDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       390 ~~~~V~s---v~~-s----pdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      ...++..   ... .    ..+..+++|+.+|++...|+.+++....
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            1111111   000 0    0455789999999999999998887544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=89.96  E-value=9.7  Score=36.54  Aligned_cols=100  Identities=9%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             ceEEEEecCCCEEEEEe-------------CCCeEEEEeCCC--Ce--EeEEec-----CCCceEEEEEccC-CC--CEE
Q 012367          311 DVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQ--CLNVFD-----HHNYVTCVQFNPI-DD--NYF  365 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s-------------~DgtV~lWD~~~--~~--~l~~~~-----h~~~V~~i~fsp~-~~--~~l  365 (465)
                      ..-+++..|++.+++++             .+|.|.++|..+  ++  .+...+     ..-....+.+.+. ++  +++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44566777888777766             689999999873  22  222211     1225667776551 23  345


Q ss_pred             EEEeC--CCcEEEEeCCC--CeEEe---ccc-CCCCeEEEEEeeCCCEEEEEE
Q 012367          366 ISGSI--DGKVRIWGVCE--KRVVD---WAD-VRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       366 ~sgs~--Dg~I~iwd~~~--~~~~~---~~~-~~~~V~sv~~spdg~~l~sgs  410 (465)
                      ++-..  +..|.+|++..  +....   ..+ .-...+.+.+.++|.+.++..
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~  183 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND  183 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence            55444  56788887753  32221   221 234689999999998777654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.44  E-value=5.7  Score=37.97  Aligned_cols=99  Identities=18%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             cceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEe--------cCCCceEEEEEccC---CCCEEEEEeC-------
Q 012367          310 GDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPI---DDNYFISGSI-------  370 (465)
Q Consensus       310 ~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~--------~h~~~V~~i~fsp~---~~~~l~sgs~-------  370 (465)
                      .....|+|.|++. |+.+...+.|++++.. +.....+        ........|+|+|.   ++.++++-+.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            4567899999886 8888888999999853 3322111        12345689999993   3444444333       


Q ss_pred             CCcEEEEeCCCC-------e-EEe-cc---cCCCCeEEEEEeeCCCEEEEE
Q 012367          371 DGKVRIWGVCEK-------R-VVD-WA---DVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       371 Dg~I~iwd~~~~-------~-~~~-~~---~~~~~V~sv~~spdg~~l~sg  409 (465)
                      ...|..|++...       + ++. +.   ........++|.|||.+.++-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            234666665432       1 111 11   112235679999999655554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=89.04  E-value=23  Score=36.71  Aligned_cols=115  Identities=10%  Similarity=0.053  Sum_probs=76.9

Q ss_pred             cceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCC--cEEEEeCCCCe
Q 012367          310 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKR  383 (465)
Q Consensus       310 ~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg--~I~iwd~~~~~  383 (465)
                      ..+..|++... + ++++-+..+.|.+.++. |+....+  ..-.....|++.|..+.++.+-....  .|...++....
T Consensus       389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~  467 (628)
T 4a0p_A          389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE  467 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS
T ss_pred             CCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC
Confidence            35667887753 3 56677778899999986 4444444  23457899999996676666654333  56666665433


Q ss_pred             EEe-cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367          384 VVD-WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL  425 (465)
Q Consensus       384 ~~~-~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~  425 (465)
                      ... ....-...+.+++.++++.|+.+.. .+.|..+++.+...
T Consensus       468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r  511 (628)
T 4a0p_A          468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR  511 (628)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence            222 2223456799999998877777765 57888899876544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.95  E-value=9.7  Score=34.85  Aligned_cols=104  Identities=10%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEe
Q 012367          320 SNYLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVD  386 (465)
Q Consensus       320 ~~~l~s~s~D-----gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~  386 (465)
                      +.+++.|+.+     ..+.+||+.+.+-...-.  ... ...++.+   ++.+++.|+.+     ..+.+||+.+.+...
T Consensus       160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            3455566544     458899998775433321  111 1223333   57788888764     468999999887655


Q ss_pred             cccCCC-CeEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367          387 WADVRD-VISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLK  426 (465)
Q Consensus       387 ~~~~~~-~V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~~  426 (465)
                      ...... .....+..-+++.++.|+.+     ..+.+||+.+++..
T Consensus       237 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            332211 11111222377788888765     35778888877654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.11  E-value=6.9  Score=35.96  Aligned_cols=94  Identities=15%  Similarity=0.229  Sum_probs=55.0

Q ss_pred             CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCCCC-eEEEEEe
Q 012367          330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV-ISAICYI  400 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~-V~sv~~s  400 (465)
                      ..+.+||+.+.+-...-.  ... ...++.+   ++.+++.|+.+     ..+.+||+.+.+.......... ....+..
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  249 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA  249 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             cEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence            358889988775333221  111 1122333   67788888765     4689999988776543322111 1111222


Q ss_pred             eCCCEEEEEEcCC-----cEEEEEecCCcee
Q 012367          401 PDGKGFIVGSITG-----TCHFYKASGNDLK  426 (465)
Q Consensus       401 pdg~~l~sgs~dG-----~v~iwd~~~~~~~  426 (465)
                      -+++.++.|+.++     .+.+||+.+++..
T Consensus       250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            3777888888654     4889999877553

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.00  E-value=29  Score=38.00  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~  386 (465)
                      .+.+++..+ +..++++-+.|+++|||++.+++++.
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEe
Confidence            467777777 88899999999999999999998775

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.74  E-value=30  Score=36.46  Aligned_cols=188  Identities=9%  Similarity=0.135  Sum_probs=99.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec--C
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE--E  299 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  299 (465)
                      ...|.++....+| .|..|+.+| +..||..+.....    .....  ......+.  . ......+.....++.+.  .
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----~~~~~--~~~i~~i~--~-~~g~lWigt~~Gl~~~~~~~  130 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----PETDF--PTDVRTMA--L-QGDTLWLGALNGLYTYQLQS  130 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----CSCCC--CSCEEEEE--E-ETTEEEEEETTEEEEEETTT
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----cccCC--CceEEEEE--e-cCCcEEEEcCCcceeEeCCC
Confidence            3468998887777 555666666 7788987654322    00000  00000010  0 11111111122232221  1


Q ss_pred             Ccceeee-----ccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-c-----CCCceEEEEEccCCCCEEEEE
Q 012367          300 SPLQELH-----GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-D-----HHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       300 ~~~~~~~-----gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~-----h~~~V~~i~fsp~~~~~l~sg  368 (465)
                      ..+..+.     .....|.++...+++.|..++.. -|..+|..++...... .     ....|.++...+ ++..|-.|
T Consensus       131 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWig  208 (758)
T 3ott_A          131 RKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIG  208 (758)
T ss_dssp             CCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEE
T ss_pred             CeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEE
Confidence            2222221     11246788887777766666655 4778888776543221 1     122488888876 55544444


Q ss_pred             eCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          369 SIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      .. +-|..+|..+++...... ....|.++...++|.+ .+|+.+| +.+|+..+..+
T Consensus       209 t~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-WigT~~G-l~~~~~~~~~~  263 (758)
T 3ott_A          209 TE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDL-LAGTDNG-LYVYHNDTTPL  263 (758)
T ss_dssp             EE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCE-EEEETTE-EEEECCTTSCC
T ss_pred             EC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCE-EEEeCCc-eeEEecCCCcE
Confidence            43 458889988776544322 2345788887777754 4556554 67788766544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.37  E-value=16  Score=34.81  Aligned_cols=143  Identities=8%  Similarity=-0.018  Sum_probs=81.8

Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEE
Q 012367          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  314 (465)
Q Consensus       235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~  314 (465)
                      .+++.++.||.|.-.|..+++.........                                  ..+.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~----------------------------------~~p~~~~~~~~~----   52 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN----------------------------------FQPLIEIQEPSR----   52 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG----------------------------------SCCSEECCCSCT----
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc----------------------------------cCCcEEecCCcc----
Confidence            378899999999999998887765543210                                  001111111100    


Q ss_pred             EEecCCCEEEEE--eCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEcc-C-------CCCEEEEEeCCCcEEEEeC
Q 012367          315 LAWSNSNYLLSC--SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP-I-------DDNYFISGSIDGKVRIWGV  379 (465)
Q Consensus       315 l~~s~~~~l~s~--s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp-~-------~~~~l~sgs~Dg~I~iwd~  379 (465)
                         ..++.++.+  +.||.|..++..+|.....+.     ...++.. .=.| .       .+..+++|+.++.+...|+
T Consensus        53 ---~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~  128 (339)
T 2be1_A           53 ---LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM  128 (339)
T ss_dssp             ---TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEET
T ss_pred             ---ccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEEC
Confidence               023334433  589999999998886555543     2222221 1111 0       3567889999999999999


Q ss_pred             CCCeEEecccCCCCe--------EEEEEe-----eCCCEEEEEEcCCcEEEEE
Q 012367          380 CEKRVVDWADVRDVI--------SAICYI-----PDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       380 ~~~~~~~~~~~~~~V--------~sv~~s-----pdg~~l~sgs~dG~v~iwd  419 (465)
                      .+|+++.........        .+....     -.+..++.|..+..+.+.+
T Consensus       129 ~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          129 LNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             TTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred             CCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            999988644332211        011110     1235677777777777766

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}

Probab=84.55  E-value=0.37  Score=30.19  Aligned_cols=18  Identities=33%  Similarity=0.650  Sum_probs=15.1

Q ss_pred             CCCCCccceeeecccccc
Q 012367            3 SSDEGVDDVFFDSTDCLS   20 (465)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~   20 (465)
                      .|||+||-+||||.+-|.
T Consensus        12 ~SdEDed~EfFDA~efIT   29 (47)
T 2rr3_B           12 MSDEDDENEFFDAPEIIT   29 (47)
T ss_dssp             SCCCCCSSCCBCCCSSCS
T ss_pred             ccccccccccccccceeE
Confidence            368899999999988665

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.42  E-value=5.5  Score=40.64  Aligned_cols=117  Identities=17%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             ceEEEEecCCC--EEEEEeCCCeEEEEeCCCC------e-------EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN------Q-------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       311 ~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~------~-------~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      ....+..+|+|  .++++-.+.+|.++|+...      +       ......-.-.....+|.+ +|+-..|-..|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceEE
Confidence            33456677887  4445566889999998731      1       122333445678899999 886667777899999


Q ss_pred             EEeCCCC----------eEEecccCCCCeEEEEE------eeCCCEEEEEEc---CC----------cEEEEEecCCcee
Q 012367          376 IWGVCEK----------RVVDWADVRDVISAICY------IPDGKGFIVGSI---TG----------TCHFYKASGNDLK  426 (465)
Q Consensus       376 iwd~~~~----------~~~~~~~~~~~V~sv~~------spdg~~l~sgs~---dG----------~v~iwd~~~~~~~  426 (465)
                      -|++...          .++......-.+-.+.-      .|||++|++...   |.          +-.++|+++.+++
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~  482 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMK  482 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCceE
Confidence            9999543          34443333334444443      579999999873   43          3478999888776


Q ss_pred             ee
Q 012367          427 LE  428 (465)
Q Consensus       427 ~~  428 (465)
                      +.
T Consensus       483 lv  484 (638)
T 3sbq_A          483 LV  484 (638)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.52  E-value=33  Score=37.61  Aligned_cols=37  Identities=19%  Similarity=0.523  Sum_probs=31.0

Q ss_pred             ceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec
Q 012367          311 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD  347 (465)
Q Consensus       311 ~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~  347 (465)
                      .|.+++..++ .++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            4566666665 589999999999999999999998864

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.40  E-value=14  Score=38.86  Aligned_cols=37  Identities=11%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC
Q 012367          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH  348 (465)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h  348 (465)
                      .|.++.+ ++.++++-+.|+++|+|++.+++++.+..-
T Consensus       223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4554443 467999999999999999999999888754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=81.19  E-value=32  Score=31.32  Aligned_cols=94  Identities=7%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCC---CCeEEEE
Q 012367          330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVR---DVISAIC  398 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~---~~V~sv~  398 (465)
                      ..+.+||+.+.+-...-.  ... .-.++.+   ++.+++.|+.+     ..+.+||+.+.+........   ....++.
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            458899998875333222  111 1122222   56777877754     45889999888765543221   1222232


Q ss_pred             EeeCCCEEEEEEcC-----CcEEEEEecCCceeee
Q 012367          399 YIPDGKGFIVGSIT-----GTCHFYKASGNDLKLE  428 (465)
Q Consensus       399 ~spdg~~l~sgs~d-----G~v~iwd~~~~~~~~~  428 (465)
                      +  +++.++.|+.+     ..+.+||+.+++....
T Consensus       246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             E--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence            3  77788888854     5688899988766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	465
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 2e-19
 Identities = 47/295 (15%), Positives = 91/295 (30%), Gaps = 28/295 (9%)

Query: 127 NECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRK 186
            +   TL+G ++   Q +    +            +K    +     +       +    
Sbjct: 49  GDFERTLKGHTDSV-QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107

Query: 187 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVV 246
                        +    K  E    Y  +    H+  +  ++ + DG  +AS   D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 247 RIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306
           R+W V +     +                                  +    ES    + 
Sbjct: 168 RVWVVATKECKAELREHRHVVEC------------------------ISWAPESSYSSIS 203

Query: 307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF 365
              G     +     +LLS S DKT++MW V    CL     H N+V  V F+     + 
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFI 262

Query: 366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
           +S + D  +R+W    KR +         ++++ +       + GS+  T   ++
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (195), Expect = 4e-17
 Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 3/201 (1%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +  H+  +  + F P    + S  ED  +++W   +     +                
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFD 68

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                  S    + I    FQ  E                   N ++++S S DKT++MW
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVI 394
           +V    C+  F  H     +     D     S S D  VR+W V  K    +  + R V+
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 395 SAICYIPDGKGFIVGSITGTC 415
             I + P+     +   TG+ 
Sbjct: 189 ECISWAPESSYSSISEATGSE 209

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 2/120 (1%)

Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFN 358
               L GH+  V  + +    + ++S S D T+++W             H + V  + F+
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 418
                     +            + +         +S++  +P+G   +  S   T   +
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (195), Expect = 5e-17
 Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 46/164 (28%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           Q    H+  I  + F P+G   A+G +D   R++ + +                      
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH------------- 266

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                                               +  +++S +   LL+   D    +
Sbjct: 267 ------------------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 335 WQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           W         V   H N V+C+     D     +GS D  ++IW
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 2/209 (0%)

Query: 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 271
           + T + ++ H   I+ + +  D R L S  +DG + IW   +               + A
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 272 KEGKIKFGKKKSSHVPVVIPD-EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 330
                 +           I + +  +      +EL GH G +    + + N +++ S D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWAD 389
           T  +W +   Q    F  H           D   F+SG+ D   ++W V E      +  
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 390 VRDVISAICYIPDGKGFIVGSITGTCHFY 418
               I+AIC+ P+G  F  GS   TC  +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 7/229 (3%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             I      + T  ++P G Y+A GG D +  I+++ +   + +   +  G        +
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRM 334
                +  +                      GH GDV+ L+ +  +   +S + D + ++
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 335 WQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
           W V    C   F  H + +  + F P + N F +GS D   R++ +   + +      ++
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269

Query: 394 ---ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439
              I+++ +   G+  + G     C+ + A   D     +  HD + + 
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSC 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 46/134 (34%)

Query: 203 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT 262
           +   +       +         I ++ FS  GR L +G +D    +W             
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--------- 301

Query: 263 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSN 321
                                                     L GH   V  L  + +  
Sbjct: 302 ------------------------------------ADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 322 YLLSCSMDKTVRMW 335
            + + S D  +++W
Sbjct: 326 AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250
             +  H   +  L  + DG  +A+G  D  ++IW+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
           D V +I+    + L GH   +  + W  +S  L+S S D  + +W       ++     +
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97

Query: 351 -YVTCVQFNP 359
            +V    + P
Sbjct: 98  SWVMTCAYAP 107

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 1e-16
 Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 40/170 (23%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 274
           ++    HK  ++++ F+ DG+ + SG  D  V++W++ +                     
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN--------------------- 285

Query: 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVR 333
                            D       +      GHK  VL +A + N  Y+LS S D+ V 
Sbjct: 286 ------------ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 334 MWQVGCNQCLNVFD-HHNYVTCVQFNPI-----DDNYFISGSIDGKVRIW 377
            W       L +   H N V  V          + N F +GS D K RIW
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 8e-14
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 27/223 (12%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H   +  +KFS DG YLA+G  +   +++ V+  +      +DD     + +        
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSP 118

Query: 281 KKSSHVPVV-----------------IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL 323
               ++  V                 I     +  +  +      +       + + + L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 324 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383
           +S S D+TVR+W +   QC       + VT V  +P D  Y  +GS+D  VR+W      
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 384 VVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFY 418
           +V+  D         +D + ++ +  DG+  + GS+  +   +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 4e-13
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 24/223 (10%)

Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279
           +    I ++ FSPDG++LA+G ED ++RIW + +          +    S          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 339
              S    V I D         L    G       ++  +  Y+ + S+D+ VR+W    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV--AVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 340 NQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV------------ 379
              +   D        H + V  V F   D    +SGS+D  V++W +            
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 380 -CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421
                 V +   +D + ++    + +  + GS      F+   
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 52/152 (34%)

Query: 193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
           K   ++   NK       +         HK  + ++  + +  Y+ SG +D  V  W   
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 253 SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312
           S                                              +PL  L GH+  V
Sbjct: 339 S---------------------------------------------GNPLLMLQGHRNSV 353

Query: 313 LDLAWSNS-------NYLLSCSMDKTVRMWQV 337
           + +A +N        N   + S D   R+W+ 
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------------- 347
           L +   H   V  + +SN    L+   +KT ++++V     +                  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 348 -----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387
                   Y+  V F+P D  +  +G+ D  +RIW +  +++V  
Sbjct: 115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMI 158

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 366
           +LDL   +    L    +    ++     + ++V      DH + V CV+F+  D  Y  
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLA 78

Query: 367 SGSIDGKVRIWGVCEKRVV-----DWADVRDV--------------ISAICYIPDGKGFI 407
           +G  +   +++ V +  +V     D A  +D               I ++C+ PDGK   
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 408 VGSITGTCHFY 418
            G+       +
Sbjct: 138 TGAEDRLIRIW 148

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 306 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
           H H+  VL L ++    + +S   D  +  W+      +      + V     +  DD Y
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKY 320

Query: 365 FISGSIDGKVRIWGV 379
            ++GS D K  ++ V
Sbjct: 321 IVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 7e-12
 Identities = 35/246 (14%), Positives = 62/246 (25%), Gaps = 40/246 (16%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273
           +  +       I + K  PDG  L  GGE   + IW + +     K+          A  
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
                    S      I       +    Q      G       ++   L +  +D TVR
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208

Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPI--------------------------------- 360
            W +   + L   D  + +  + + P                                  
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268

Query: 361 -------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 413
                     +F+S   D  +  W       +  +     + +     D K  + GS   
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 414 TCHFYK 419
               Y+
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 47/133 (35%)

Query: 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265
            +         ++  H+ C+ +LKF+  G++  S G+D ++  W                
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------ 296

Query: 266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 324
                                             + + +       VL    S +  Y++
Sbjct: 297 ---------------------------------GASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 325 SCSMDKTVRMWQV 337
           + S DK   +++V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 11/124 (8%)

Query: 286 VPVVIPDEVFQIEESP--LQELH--GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ 341
            PV  P +       P   ++++   H   V  +  SN    +       V++W +    
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83

Query: 342 C------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
                  L+  +  NY+   +  P D    I G     + IW +        A++     
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 396 AICY 399
           A   
Sbjct: 143 ACYA 146

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 6/203 (2%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-----SVAASCKSFTDDGGFGSNAKEGK 275
           H   +  +  S   R++ +GG  G V++W ++     S  +       D    S      
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                       + I D          +               +S    SC  D  + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
            +     +  F  H           D     +G +D  VR W + E R +   D    I 
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228

Query: 396 AICYIPDGKGFIVGSITGTCHFY 418
           ++ Y P G+   VG  +      
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVL 251

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 38/240 (15%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-------------HVTSVAASCKS 260
           + + ++ H   + T      G  + SG +D  +++W             H   V +S   
Sbjct: 8   SPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 320
                   ++           +  H        V  +     + + G +   L +    +
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 321 ---------------------NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359
                                  ++S + D  V++W      CL+    H          
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQ 184

Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
            D  + +SGS+D  +R+W V     +        +++          + G+   T   + 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 16/172 (9%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +Q H   ++      DG ++ SG  D  +R+W V +                   +  
Sbjct: 171 HTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
           I       S V   I D         LQ  + H+  V  L + N N++++ S D TV++W
Sbjct: 229 ILVSGNADSTV--KIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLW 285

Query: 336 QVGCNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSIDG----KVRIW 377
            +   + +              V  ++ +         GS +G    K+ + 
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDG----VVRIW 249
             + E     G +W ++ S      A G  +G     + + 
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 5e-12
 Identities = 26/210 (12%), Positives = 58/210 (27%), Gaps = 51/210 (24%)

Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284
           I    ++ D   +A    +  V I+  +                                
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCL 343
                            + EL  H G V  + W+ +SN +++C  D+   +W +      
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 344 NVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISA 396
                       +      ++  F  GS    + I    ++            +R  + +
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLK 426
           + + P+      GS    C  + A   +++
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.6 bits (124), Expect = 4e-08
 Identities = 30/218 (13%), Positives = 58/218 (26%), Gaps = 23/218 (10%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
            E++ H G +  + ++PD   + + G D    +W +                 +      
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL----AWSNSNYLLSCSMDKT 331
               K        VI    F+ E       H  K     +       NS  L + S D  
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 332 VRMWQVGCNQCLNVFDHHNYVTCVQF------------------NPIDDNYFISGSIDGK 373
            R++     +         + + + F                     + +     S D  
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 374 VRIWGV-CEKRVVDWADVRDVISAICYIPDGKGFIVGS 410
           V +     +  V   A     + A+ +I +      G 
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 262

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 219 QAHKGCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSF 261
             HK  +  +     G+       + G DG + IW V S+ ++ K  
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 10/130 (7%)

Query: 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 272
                + +    +  + F  +   +A+G  D    ++   S A              +++
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

Query: 273 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-----NSNYLLSCS 327
            G     + ++                +       HK  V  ++         +   +  
Sbjct: 293 RGLTARERFQNLDKKASSEGSA----AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 328 MDKTVRMWQV 337
           MD  + +W V
Sbjct: 349 MDGGMSIWDV 358

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 59/226 (26%)

Query: 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW---------------------- 249
           + T+   +AH   I+++       +  S   DG +++W                      
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 250 ---HVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306
              HV  + A  +   +     + +  G + F +         +       E+  L +  
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF-----EKLDLLDSD 116

Query: 307 GHKGDVLDLAWSNS------NYLLSCSMDKTVRMWQV-------------------GCNQ 341
             K     L W  S      + L++  +  T  +W+                        
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387
             +      + T V  +        +G  +G V+I  +   R +  
Sbjct: 177 VESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYN 220

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 26/237 (10%), Positives = 63/237 (26%), Gaps = 47/237 (19%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH----------------------V 251
           T +          ++  S  G  +A+G  +G V+I                        +
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 252 TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD 311
            SV  S +         SN+      +  +    +       V             H   
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS---LSVPTHSSQASLGEFAHSSW 291

Query: 312 VLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYF 365
           V+ L+++ +   L S   D  +R W V   + +   + H          +  +    +  
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE-HGDSL 350

Query: 366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422
                     ++ V          ++    +       +      +  +  +++ +G
Sbjct: 351 AEPG------VFDVK--------FLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 15/224 (6%), Positives = 50/224 (22%), Gaps = 36/224 (16%)

Query: 229 KFSPDGRYLASGGEDGVVRIWHVTS-----------------------VAASCKSFTDDG 265
           + + +   +A+    G +  + +T                          A     ++D 
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 266 G----FGSNAKEGKIK---FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS 318
                  +   +G      F         + +        +  ++           +  S
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC------VQFNPIDDNYFISGSIDG 372
               + +   + TV++ ++   + L  F+  + +                +         
Sbjct: 194 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 416
                 + E    +      V +       G+      +     
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 48/201 (23%)

Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 277
           ++ H   + T     +  Y+ +G +D ++R++   +                        
Sbjct: 8   LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN------------------------ 42

Query: 278 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCS--MDKTVRMW 335
                                +  L +L GH G V  L +++   L+S S      V   
Sbjct: 43  ---------------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
           + GC   +    +            +  Y ++GS D  + +W + ++  V          
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141

Query: 396 AICYIPDGKGFIVGSITGTCH 416
            + + P+   + VG + G   
Sbjct: 142 LVFHTPEENPYFVGVLRGHMA 162

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN 363
           L GH   V+       NY+++ + DK +R++     + L     H   V  +++      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 364 YFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420
             +SGS         I   C   V +  +       I    + K  + GS   T H +K 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 421 SGNDLKLEKVDFH 433
                  +  + H
Sbjct: 126 PKESSVPDHGEEH 138

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN 363
           + H        +  S+ +L    +    ++ +   + ++       + +  V F      
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KT 336

Query: 364 YFISGSIDGKVRIW 377
              +   DG+  + 
Sbjct: 337 LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 9/171 (5%), Positives = 28/171 (16%), Gaps = 45/171 (26%)

Query: 165 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 224
           +    +   +                      +    +          Y+ +    H   
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 284

Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284
                F      L SG  +    I+++ S                               
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRS------------------------------- 312

Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                         +     +      +  + +     + +   D    + 
Sbjct: 313 -------------GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 7e-11
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 302 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQV----GCNQCLNVFDHHNYVTCVQ 356
           +Q     K  + D+    + + LL  S D ++ +++          L    + + + C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 357 FNPIDDNYFISGSIDGKVRIW 377
           F    D     G++ G++   
Sbjct: 64  FIDNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 258 CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW 317
                +  G+  ++ +G++                           +       V  + +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 318 S-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376
           S    +L +   D  +  W +   + +  F   N  + V+     DN     + D   + 
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKT 318

Query: 377 WGVCEK 382
               ++
Sbjct: 319 NAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 20/214 (9%), Positives = 47/214 (21%), Gaps = 14/214 (6%)

Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS------NAK 272
           QA K  I  +K  P    L     DG + ++     A +                     
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 273 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTV 332
                +       +  V        +     E +     +               + + +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 333 RMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---- 385
                G         +         +     + +  I G  + +V+ + +          
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 386 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFY 418
            +      +        + +G+   SI G     
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 5/125 (4%)

Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
                G V    + +     + S     R  ++         +    V  ++F+P    +
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT----NLAYPVNSIEFSP-RHKF 265

Query: 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
             +   DG +  W +  ++ +      +  S +          + +   T     A    
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

Query: 425 LKLEK 429
           ++L  
Sbjct: 326 IELNA 330

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (141), Expect = 3e-10
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 373
           W +S    +   D T+R+W V  ++C+  +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 374 VRIW 377
           +  +
Sbjct: 320 LNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 14/231 (6%)

Query: 202 NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261
              K      +    E Q   G I  + +  +GR L   GE        ++  + +    
Sbjct: 95  TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE 154

Query: 262 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF---QIEESPLQELHGHKGDVLDLAWS 318
                   NA   K     +  +                  +  +  H     V D+ +S
Sbjct: 155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 214

Query: 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN-----PIDDNYFISGSIDGK 373
             +     ++    ++          +    +    VQ        +D   F +   D  
Sbjct: 215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274

Query: 374 VRIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
           +R+W V   + V     D   + +    +    +G+  I  S+ GT +FY+
Sbjct: 275 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 23/188 (12%), Positives = 41/188 (21%), Gaps = 28/188 (14%)

Query: 221 HKGCIWTLKFSPDGRYLASG-GEDGVVRIW---------------HVTSVAASCK-SFTD 263
            +     L + P    +A   G+   VR                 H +SV  + K S   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 264 DGGF-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 322
              +  S  + GK+                    +E +   E     G + D++W     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKES-------NSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 323 L---LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
               +    D             L     H+                    D    ++  
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 380 CEKRVVDW 387
                   
Sbjct: 189 GPPFKFSA 196

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 19/224 (8%)

Query: 221 HKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG------------ 266
               + T+KFSP    +YL SG E G V +W  T    S     +               
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 267 -FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLS 325
            +    +   +    + +  V +         E S   +              +      
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 326 CSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
            S+                     ++V  V+F+P    + I+   D K+  +       +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 386 DWADVRDVISAIC----YIPDGKGFIVGSITGTCHFYKASGNDL 425
            + +                D + F       T   +  + +  
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 49/136 (36%)

Query: 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265
                 L   ++ Q             D +  A+ G D  +R+W VT+            
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT------------ 282

Query: 266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV----LDLAWSNSN 321
                                               +Q+    K  +    + +  + + 
Sbjct: 283 ---------------------------------SKCVQKWTLDKQQLGNQQVGVVATGNG 309

Query: 322 YLLSCSMDKTVRMWQV 337
            ++S S+D T+  +++
Sbjct: 310 RIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 8e-10
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 3/150 (2%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           Q    H   I  L  S DG+ L S   +G +  W +++  ++           +  K   
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                  S    + +        +S     +      L LA S    +   +  K + ++
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 365
             G              +CV  +       
Sbjct: 126 SHGKLTE---VPISYNSSCVALSNDKQFVA 152

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 6e-09
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 302 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFN 358
            Q  +GH   +  L+ S +   L S   +  +  W +       VF   H   +T ++  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDW 387
              D + +S      +++       V   
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 8e-06
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 317 WSNSNYLLSCSMDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373
             ++  L + S+D +V +W +     +  +    H            ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 374 VRIWGV 379
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
            AH           +   + S G+D  ++ W+V 
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV 337
           + +       V  + W N   ++S   D  ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 30/267 (11%), Positives = 72/267 (26%), Gaps = 43/267 (16%)

Query: 213 YTSQEIQAHKGCIWTLK-FSPDGRYLASGGEDGVVRIWHVTS------------------ 253
           ++ Q I         +     D + + SG  D  ++IW   +                  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 254 --------------------VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293
                                     +                      S    + + D 
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT 353
               + +  + L GH+  V  + + +  Y++S S D+T+++W     + +   + H    
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-- 179

Query: 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 413
            +      D   +SGS D  +R+W +     +   +  + +       + +  + G+  G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYDG 238

Query: 414 TCHFYKASGNDLKLEKVDFHDRKKTSG 440
               +                 +    
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVE 265

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 9e-09
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 18/142 (12%)

Query: 205 KCMEFTALYTSQEIQAHKGCIWTLKF-SPDGRYLASGGEDGVVRIWHVTSVA-------- 255
           + ++     T + ++   G    +       R + SG  D  +R+W +   A        
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 217

Query: 256 --ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 313
                    D+    S A +GKIK     ++  P              L+ L  H G V 
Sbjct: 218 EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG------TLCLRTLVEHSGRVF 271

Query: 314 DLAWSNSNYLLSCSMDKTVRMW 335
            L + +   ++S S D T+ +W
Sbjct: 272 RLQF-DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 29/260 (11%), Positives = 75/260 (28%), Gaps = 23/260 (8%)

Query: 128 ECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKP 187
           EC   L G +                     ++        +++    + E  +  +   
Sbjct: 46  ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 105

Query: 188 NSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVR 247
                 +    +          T +   + +  H+  +  + F       ASG  D  ++
Sbjct: 106 GMMVTCSKDRSIAVWDMASP--TDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIK 161

Query: 248 IWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 307
           +W+ ++            G        ++       + +       ++ IE      +  
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI------RLWDIECGACLRVLE 215

Query: 308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----------HHNYVTCVQF 357
              +++     ++  ++S + D  +++W +                    H   V  +QF
Sbjct: 216 GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 275

Query: 358 NPIDDNYFISGSIDGKVRIW 377
              D+   +S S D  + IW
Sbjct: 276 ---DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359
             ++ L+GHK  +  L + +   ++S S D T+R+W + C  CL V + H  +       
Sbjct: 169 EFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 227

Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAI--------CYIPDGKGFIVGSI 411
             +   +SG+ DGK+++W +              +  +            D    +  S 
Sbjct: 228 --NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSH 285

Query: 412 TGTCHFY 418
             T   +
Sbjct: 286 DDTILIW 292

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (131), Expect = 4e-09
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-DDNYFISGSIDGKVR 375
             +   + S S DKT+++W V   +          +   Q   I      +S S +G + 
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306

Query: 376 IW 377
             
Sbjct: 307 FV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 36/222 (16%), Positives = 58/222 (26%), Gaps = 11/222 (4%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----SVAASCKSFTDDGGFGSN 270
           ++    H       K SP G Y ASG   G VRIW  T     +  +   F+      S 
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 330
             E K      +       +           L         V          +     + 
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV-------RIWGVCEKR 383
                           +H  +V  V++NP    +  +G     V          GV E  
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 384 VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425
            +        +  + + PDG      S   T   +  +   +
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 272

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 43/129 (33%)

Query: 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG 266
                   S +  AH G ++ L +SPDG  +AS   D  ++IW+V +             
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT------------- 269

Query: 267 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
                        K + +                 +      +   L + W+    L+S 
Sbjct: 270 ------------LKVEKT-----------------IPVGTRIEDQQLGIIWTK-QALVSI 299

Query: 327 SMDKTVRMW 335
           S +  +   
Sbjct: 300 SANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 15/195 (7%), Positives = 32/195 (16%), Gaps = 50/195 (25%)

Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287
           L  +P G  +        V    V S                                  
Sbjct: 23  LGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------- 47

Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF 346
                       +  +    H         S +  Y  S  +   VR+W       +   
Sbjct: 48  -----------LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 96

Query: 347 D---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 403
                   V  + ++         G    +     + +    +        +        
Sbjct: 97  TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156

Query: 404 KGFIVGSITGTCHFY 418
                       +  
Sbjct: 157 SRPFRIISGSDDNTV 171

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 16/216 (7%), Positives = 43/216 (19%), Gaps = 22/216 (10%)

Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279
                I  ++   D +     G      +          + F      G+    G  + G
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNG 97

Query: 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL-----------LSCSM 328
           K             V      P       +  + D   S+++                 +
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157

Query: 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--------C 380
            + + ++ +   +       +++     F+          S                   
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 416
             +      +    +    +P       G       
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 16/224 (7%), Positives = 53/224 (23%), Gaps = 16/224 (7%)

Query: 166 WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCI 225
            +R       +     + +        K  + +    +   +                  
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181

Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTD-------DGGFGSNAKEGKIKF 278
           +   F  D + L       +        +  S +  +         G         +   
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241

Query: 279 GKKKSSHV-PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVR 333
            +     +  +        ++    + +   +  +L  +         Y         + 
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 301

Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
            + V   +   V ++   +T ++ +  D    +    DGK+  +
Sbjct: 302 KYDVKTRKVTEVKNN---LTDLRLSA-DRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253
           ++++   K  +  L+ S D + +    +DG +  + +  
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357
            +  L+ + GH   +  L  +    L+S S D  +  W           DH N +  +  
Sbjct: 2   HDEVLKTISGHNKGITALTVN---PLISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDN 54

Query: 358 NP 359
           + 
Sbjct: 55  SK 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 4e-07
 Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 44/132 (33%)

Query: 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265
                       I          +   +   +A+G  D  + I+ V              
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------------ 246

Query: 266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLS 325
                                               ++ L+ HK  V +L W   + L+S
Sbjct: 247 --------------------------------PMKIIKALNAHKDGVNNLLWETPSTLVS 274

Query: 326 CSMDKTVRMWQV 337
              D  ++ W V
Sbjct: 275 SGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 6e-07
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDN 363
                   +      + + + S+D  + ++ V    + +   + H + V  + +     +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PS 270

Query: 364 YFISGSIDGKVRIWGV 379
             +S   D  ++ W V
Sbjct: 271 TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 24/187 (12%), Positives = 45/187 (24%), Gaps = 20/187 (10%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           + I  H   I  L  +P    L SG  DG +  W  +S+     +               
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-------- 54

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                   S              +      H         + +N  +    + D  + + 
Sbjct: 55  --------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
           Q      +     ++  + V  +       +      +V      E        +R   S
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 396 AICYIPD 402
            I   P 
Sbjct: 167 YISISPS 173

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 11/191 (5%), Positives = 37/191 (19%), Gaps = 22/191 (11%)

Query: 230 FSPDGRYLASGGEDGVVRIWHVTS-------VAASCKSFTDDG---------GFGSNAKE 273
            S      AS           V +        ++        G             +   
Sbjct: 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
                      +      D       +  Q +   K     +  +  +     +  +   
Sbjct: 241 AGATMKAAIDGNESGRKADN---FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--FISGSIDGKVRIWGVCEKRVVDWADVR 391
                  Q      + +    +     D     + + +    + I+     +     ++ 
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356

Query: 392 DVISAICYIPD 402
               ++    +
Sbjct: 357 KGPESLSVQNE 367

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 13/187 (6%), Positives = 27/187 (14%), Gaps = 49/187 (26%)

Query: 230 FSPDGRYLA----------SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279
               G   A           G     V ++   +                          
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------------------- 106

Query: 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 339
                    +     F +              ++    S++  L             V  
Sbjct: 107 --LPIADIELPDAPRFSVGPRV---------HIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 340 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY 399
                +       +C   +P        GS    +    +                A   
Sbjct: 156 ASDDQLTKSA---SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212

Query: 400 IPDGKGF 406
                  
Sbjct: 213 SSQAAQA 219

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253
                + + F   G  L  GG    + +++  +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 17/274 (6%), Positives = 55/274 (20%), Gaps = 35/274 (12%)

Query: 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------------ 253
           C        S         +++   SPDG+ + +          H               
Sbjct: 72  CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 131

Query: 254 --VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD----EVFQIEESPLQELHG 307
              A   ++F                          + +          +     +    
Sbjct: 132 GLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSA 191

Query: 308 HKGDVLDLAWSNSN----------------YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
                     S  +                   +  +        +   +          
Sbjct: 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 251

Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
                      +      +  ++  + + +++++  A++      + +   G    +G  
Sbjct: 252 ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 311

Query: 412 TGTCHFYK-ASGNDLKLEKVDFHDRKKTSGNKIT 444
                 +   +   +K  K+   D   T+     
Sbjct: 312 FNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFI 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 13/132 (9%), Positives = 28/132 (21%), Gaps = 10/132 (7%)

Query: 315 LAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID 371
            A      Y++  +    + +  V  +                    P +   ++  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 372 GKVRIW-------GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
           G +                     +V   + +    PDGK                    
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 425 LKLEKVDFHDRK 436
            +LE     D  
Sbjct: 122 PRLEVFSTADGL 133

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 21/215 (9%), Positives = 41/215 (19%), Gaps = 21/215 (9%)

Query: 221 HKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-----------------TSVAASCKSFT 262
            K    T   +PD R         G +    +                    +    + +
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 263 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 322
            DG           +         P +         E+           V  +  ++   
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382
           L     D       V   +        N+       P    ++   S   +  +     +
Sbjct: 158 LYVAGPDIYK--MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 383 RVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCH 416
              D  D             D K     +      
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 17/171 (9%), Positives = 38/171 (22%), Gaps = 12/171 (7%)

Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGKIKF-GKKK 282
                   Y+        + +  V S     KS      FG        + +  +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 283 SSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCN 340
              +  +  D       + L  +       +   A S +   + +               
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 341 QC----LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387
                  +  D         F      Y +  + DG + + G    ++   
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253
                +++  S DG  +  GG  G +  +   +
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 20/212 (9%), Positives = 53/212 (25%), Gaps = 17/212 (8%)

Query: 217 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTS--------VAASCKSFTDDGGF 267
            I            +P GR   A+  +   +    + +        ++   +      G 
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87

Query: 268 GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL-----HGHKGDVLDLAWS-NSN 321
             +     +   +            +  ++     + L           +  LAW+ + +
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
            L     D  V   + G    +      ++       P     +      G +       
Sbjct: 148 KLYGLGRDLHVMDPEAGT--LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITG 413
           ++ +D AD     + +  +    G +      
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 19/220 (8%), Positives = 45/220 (20%), Gaps = 24/220 (10%)

Query: 201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 260
           Q  +  +      + ++       I  L ++ DG  L   G D  V      ++      
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 320
                                           +   +      E  G        A  + 
Sbjct: 173 -----------------------QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209

Query: 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380
           +     +    +    +   +          V                     +  + + 
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGAYNVLESFDLE 268

Query: 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420
           +   +    +     ++    DG    +G   G    Y A
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 8/130 (6%), Positives = 26/130 (20%), Gaps = 6/130 (4%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
                       D            +    + +   + +       F  +          
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS-----TAVNP 250

Query: 281 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGC 339
            K+         E F +E++   +          +  S + + +        +  +    
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 340 NQCLNVFDHH 349
            +     D  
Sbjct: 311 LEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 11/147 (7%), Positives = 35/147 (23%), Gaps = 9/147 (6%)

Query: 321 NYLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           +Y+L+ +    + +           + + D           P     + + +    +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 378 GVCEKRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431
            +     +   D+         +      PDGK   +                 ++   D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 432 FHDRKKTSGNKITGIQGRISKNYDNFR 458
                +    +       ++   D  +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSK 148

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 13/120 (10%), Positives = 34/120 (28%), Gaps = 7/120 (5%)

Query: 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
           + ++      + +      + + V D    V   + +     Y +    D ++ +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 382 KRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435
           K     A++      R V S+     + +  I G+                 + V     
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 28/258 (10%), Positives = 57/258 (22%), Gaps = 56/258 (21%)

Query: 223 GCIWTLKFSPDGRYLA----------SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 272
           G +     + DG ++A           G     V ++                   +   
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV----------------TLLP 90

Query: 273 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTV 332
              I+        V                     +           +      S    V
Sbjct: 91  TADIELPDAPRFLVG-------------------TYPWMTSLTPDGKTLLFYQFSPAPAV 131

Query: 333 RMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-- 390
            +  +       + D      C    P   + F     DG +       +   +      
Sbjct: 132 GVVDLEGKAFKRMLDVP---DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188

Query: 391 -----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKIT 444
                  +I+   Y       +  + TG  H    S  D K L  V+     + +     
Sbjct: 189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP 248

Query: 445 GIQGRISKNYDNFRRFQT 462
           G   +++ +    R +  
Sbjct: 249 GGWQQVAYHRALDRIYLL 266

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 221 HKGCIWTLKFSPDGRYL--ASGGEDGVVRIWHVTS 253
               I ++  S D + L  A    D  + I    S
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 29/228 (12%), Positives = 53/228 (23%), Gaps = 46/228 (20%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +      +   + S  GRYL   G DG V +  +                       +
Sbjct: 56  TVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWM--------------KEPTTVAE 100

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVR 333
           IK G                             +           +              
Sbjct: 101 IKIGS--------------------------EARSIETSKMEGWEDKYAIAGAYWPPQYV 134

Query: 334 MWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD 392
           +      +   +           +++P      I  S      I  V E   +   D  D
Sbjct: 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 393 VIS-AICYIPDGKGFIVGSITGTC-HFYKASGNDLKLEKVDFHDRKKT 438
           + +     I   +    G + G+  +F  A+    KL  +D  + K  
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376
            + +          TV M   G N+             +   P     +++ S    V +
Sbjct: 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSV 270

Query: 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
                  +     V          P   G  +GSI
Sbjct: 271 IDTATNTITATMAVGKN-------PYASGQFIGSI 298

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 6/53 (11%), Positives = 16/53 (30%)

Query: 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           + S    + +  V  N+        +       +P     +++ +    V I 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSII 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	465
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.74
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.7
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.59
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.59
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.59
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.5
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.47
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.47
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.44
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.43
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.43
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.3
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.26
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.17
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.99
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.93
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.83
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.01
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.01
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.91
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.21
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.39
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.89
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.78
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.5
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.82
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.67
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	92.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.79
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.05
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.87
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.83
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.93
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	88.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.78
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	87.54
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.76
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	85.66
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.51
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.1
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	80.04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=8.1e-27  Score=223.57  Aligned_cols=242  Identities=17%  Similarity=0.303  Sum_probs=173.6

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc------------cCCCeEEec
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN------------AKEGKIKFG  279 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  279 (465)
                      +...++|+||+++|++|+|+|++++||||+.||+|+|||+.++............+...            .....+...
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            44567899999999999999999999999999999999999877665544333322111            111111110


Q ss_pred             cCCC----------------Cc-eeEecCCc----------eeee---cCCcceeeeccccceEEEEecCC-CEEEEEeC
Q 012367          280 KKKS----------------SH-VPVVIPDE----------VFQI---EESPLQELHGHKGDVLDLAWSNS-NYLLSCSM  328 (465)
Q Consensus       280 ~~~~----------------~~-~~~~~~~~----------~~~~---~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~  328 (465)
                      ....                .. ........          ....   ..........+...+....+.+. .++++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            0000                00 00000000          0000   11112233456667778887775 58999999


Q ss_pred             CCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCC
Q 012367          329 DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGK  404 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~  404 (465)
                      |++|++||+++++++..+ .|...|++++|+| ++++|++|+.|+.|++||+.......   ...+...|++++|+|+++
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999999999999998 4889999999999 99999999999999999999877654   345677899999999999


Q ss_pred             EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------cc-eeeee
Q 012367          405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------DN-FRRFQ  461 (465)
Q Consensus       405 ~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d~-~~~~~  461 (465)
                      +|++|+.||.|++||+.+++.. ..+..      +...|++++|+|++.+      |+ +++|+
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~-~~~~~------H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRA-GVLAG------HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE-EEECC------CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCcEE-EEEcC------CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999887653 23332      3468999999998644      43 56664

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.1e-27  Score=227.62  Aligned_cols=217  Identities=21%  Similarity=0.311  Sum_probs=165.3

Q ss_pred             cccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--ecCCCCcccccCCCeEEeccCCCCce
Q 012367          209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS--FTDDGGFGSNAKEGKIKFGKKKSSHV  286 (465)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (465)
                      +......+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.......  ......+.      .+.+........
T Consensus        45 ~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~------~v~~s~d~~~l~  118 (311)
T d1nr0a1          45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK------DISWDSESKRIA  118 (311)
T ss_dssp             TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE------EEEECTTSCEEE
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc------cccccccccccc
Confidence            3445566778899999999999999999999999999999999886543322  11111111      111211111111


Q ss_pred             eEecC----Cceeeec-CCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEc
Q 012367          287 PVVIP----DEVFQIE-ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN  358 (465)
Q Consensus       287 ~~~~~----~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fs  358 (465)
                      .....    ..++.+. .++...+.+|...|.+++|+|++  .|++|+.|++|++||++++++...+ .|...|+++.|+
T Consensus       119 ~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~  198 (311)
T d1nr0a1         119 AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN  198 (311)
T ss_dssp             EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccC
Confidence            11110    1133332 45667888999999999999975  5889999999999999999998888 588999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEe--------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVD--------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~--------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~  430 (465)
                      | +++++++|+.|+.|++||+.++....        ..+|...|++++|+|++++|++|+.||.|+|||+.++++. ..+
T Consensus       199 p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~-~~l  276 (311)
T d1nr0a1         199 P-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE-KTI  276 (311)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEE
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE-EEE
Confidence            9 99999999999999999998876543        2357889999999999999999999999999999988653 344


Q ss_pred             eec
Q 012367          431 DFH  433 (465)
Q Consensus       431 ~~~  433 (465)
                      ..+
T Consensus       277 ~~~  279 (311)
T d1nr0a1         277 PVG  279 (311)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.8e-27  Score=224.58  Aligned_cols=245  Identities=15%  Similarity=0.207  Sum_probs=166.5

Q ss_pred             chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec------------CCCCcccccCCCeEEeccC
Q 012367          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT------------DDGGFGSNAKEGKIKFGKK  281 (465)
Q Consensus       214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  281 (465)
                      ..++++||+++|++|+|+|+|++||||+.||+|++||+.++........            +............+.++..
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            3578899999999999999999999999999999999987654433221            1111111111222221110


Q ss_pred             CC----------------CceeEecCCc----------eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEE
Q 012367          282 KS----------------SHVPVVIPDE----------VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM  334 (465)
Q Consensus       282 ~~----------------~~~~~~~~~~----------~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~l  334 (465)
                      ..                .......++.          +.......... ..+...+.+++|+|++ +|++++.|+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE-EECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             CCccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            00                0000111111          00001111111 1234567889999875 8899999999999


Q ss_pred             EeCCCCeEeE--EecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE----ecccCCCCeEEEEEeeCCCEEEE
Q 012367          335 WQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV----DWADVRDVISAICYIPDGKGFIV  408 (465)
Q Consensus       335 WD~~~~~~l~--~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~~V~sv~~spdg~~l~s  408 (465)
                      ||+.++....  ...|...|++++|+| ++.++++++.|+.|++||+.++...    .+..|...|++++|+|++++|++
T Consensus       163 ~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         163 YKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceEE
Confidence            9998887544  446899999999999 9999999999999999999876544    25668899999999999999999


Q ss_pred             EEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec-----CCcc-ceeeeecCC
Q 012367          409 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS-----KNYD-NFRRFQTPY  464 (465)
Q Consensus       409 gs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~-----gs~d-~~~~~~~p~  464 (465)
                      |+.||.|++||+.+...........    .+...+..+.+.++     ++.| ++++|++||
T Consensus       242 gs~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~~  299 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSDHPIIIKGA----HAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF  299 (299)
T ss_dssp             EETTSCEEEEETTCTTSCCEEETTS----STTSCEEEEEEEETTEEEEEETTSCEEEEECCC
T ss_pred             EcCCCEEEEEECCCCCcceEEEecC----CCCCcEEEEEECCCCEEEEEeCCCEEEEEeccC
Confidence            9999999999998765543222111    12244555544332     3344 589999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.2e-26  Score=218.87  Aligned_cols=243  Identities=16%  Similarity=0.316  Sum_probs=179.1

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc------------cCCC----
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN------------AKEG----  274 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~------------~~~~----  274 (465)
                      .....++|+||+++|++|+|+|++++||||+.||+|+|||+.++............+...            ....    
T Consensus         6 ~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            344457899999999999999999999999999999999998866554433222111000            0000    


Q ss_pred             -------e-------------EEeccCCCCceeEecCC---ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCC
Q 012367          275 -------K-------------IKFGKKKSSHVPVVIPD---EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD  329 (465)
Q Consensus       275 -------~-------------~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D  329 (465)
                             .             ..+... .........+   .+|.+ ....+..+.+|...+.+++|++++ +|++++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccceeeeccCC-CceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence                   0             000000 1111111111   12333 245567788999999999999975 89999999


Q ss_pred             CeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-------------------CCCEEEEEeCCCcEEEEeCCCCeEEe-cc
Q 012367          330 KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI-------------------DDNYFISGSIDGKVRIWGVCEKRVVD-WA  388 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~-------------------~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~  388 (465)
                      +.|++|++.++.++..+ .|...+.+++|+|.                   .+.++++|+.|+.|++||+.+++.+. +.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            99999999999998888 58889999999872                   24579999999999999999988765 77


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------cc-eeeee
Q 012367          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------DN-FRRFQ  461 (465)
Q Consensus       389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d~-~~~~~  461 (465)
                      +|...|++++|+|++++|++|+.||.|++||+.+++.. ..+..|      ...|++++|+|++.+      |+ +++|+
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~h------~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM-KTLNAH------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC-EEEECC------SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEE-EEEcCC------CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            89999999999999999999999999999999887653 334333      368999999998644      43 56664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-26  Score=221.84  Aligned_cols=233  Identities=15%  Similarity=0.273  Sum_probs=178.3

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--ecCCCCcccccCCCeEEeccCCCCceeEecCCc-
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS--FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-  293 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (465)
                      ...+|.+.|++|+|+|+|++||+|+.||+|++||+.........  ........      ...+............... 
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~s~~~d~~i  165 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY------ALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE------EEEECTTSSEEEEEETTSCE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc------cccccccccccccccccccc
Confidence            44689999999999999999999999999999998764432221  11111111      0111111111111111111 


Q ss_pred             -eeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367          294 -VFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       294 -~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                       ++.+ ..++.....+|...|.+++|++++ .+++++.|++|++||+++++.+..+.|...|.+++|+| +++++++|+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~  244 (337)
T d1gxra_         166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGME  244 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcc-cccccceecc
Confidence             2222 234556777899999999999875 89999999999999999999999999999999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      |+.|++||+.++.......|...|++++|+|+|++|++|+.||.|++||+.+++.... ..       +...|++++|+|
T Consensus       245 d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~-------~~~~v~~~~~s~  316 (337)
T d1gxra_         245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SK-------ESSSVLSCDISV  316 (337)
T ss_dssp             TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EE-------CSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-cc-------CCCCEEEEEEeC
Confidence            9999999999999888899999999999999999999999999999999998765432 21       236799999999


Q ss_pred             cCCc------cc-eeeeecCC
Q 012367          451 SKNY------DN-FRRFQTPY  464 (465)
Q Consensus       451 ~gs~------d~-~~~~~~p~  464 (465)
                      ++.+      |+ +++|++=|
T Consensus       317 d~~~l~t~s~D~~I~vWdl~~  337 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEEEEC
Confidence            8654      43 78887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.9e-25  Score=219.84  Aligned_cols=206  Identities=12%  Similarity=0.187  Sum_probs=162.2

Q ss_pred             cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccC
Q 012367          193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK  272 (465)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~  272 (465)
                      ....+.+|.....     .....+.|++|.++|++|+|+|++++||||+.|++|+|||+.+....               
T Consensus        27 ~~~~i~iw~~~~~-----~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~---------------   86 (371)
T d1k8kc_          27 NNHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---------------   86 (371)
T ss_dssp             SSSEEEEEEEETT-----EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---------------
T ss_pred             CCCEEEEEECCCC-----CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc---------------
Confidence            3445555543221     22345678899999999999999999999999999999998764321               


Q ss_pred             CCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE---E-e-
Q 012367          273 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---V-F-  346 (465)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~---~-~-  346 (465)
                                                  +...+.+|...|.+++|+|++ .|++++.|++|++|++.......   . . 
T Consensus        87 ----------------------------~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~  138 (371)
T d1k8kc_          87 ----------------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK  138 (371)
T ss_dssp             ----------------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred             ----------------------------cccccccccccccccccccccccceeecccCcceeeeeeccccccccccccc
Confidence                                        233455788999999999975 89999999999999986654322   2 2 


Q ss_pred             cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-------------------EEecccCCCCeEEEEEeeCCCEEE
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-------------------VVDWADVRDVISAICYIPDGKGFI  407 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-------------------~~~~~~~~~~V~sv~~spdg~~l~  407 (465)
                      .|...|.+++|+| ++.+|++|+.|++|++||.....                   ......|...|.+++|+|+|+.|+
T Consensus       139 ~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         139 PIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             ccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence            3788999999999 99999999999999999985421                   234567888999999999999999


Q ss_pred             EEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       408 sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      +++.||.|++||+..+... ..+..+      ..+|+++.|+|++.+
T Consensus       218 s~~~d~~i~iwd~~~~~~~-~~~~~~------~~~v~s~~fs~d~~~  257 (371)
T d1k8kc_         218 WVSHDSTVCLADADKKMAV-ATLASE------TLPLLAVTFITESSL  257 (371)
T ss_dssp             EEETTTEEEEEEGGGTTEE-EEEECS------SCCEEEEEEEETTEE
T ss_pred             ccccCCcceEEeeecccce-eeeecc------cccceeeeecCCCCE
Confidence            9999999999999876542 233333      367999999998753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.9e-25  Score=218.43  Aligned_cols=198  Identities=16%  Similarity=0.239  Sum_probs=156.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +..+|+|++|+|+|++||+|+.||.|+|||+.+...                                           .
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------~   42 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------V   42 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------------------------------E
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-------------------------------------------E
Confidence            457899999999999999999999999999875432                                           2


Q ss_pred             cceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          301 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      .+..+.+|.+.|.+++|+|+ ++|++|+.|++|+|||+.++.....+   .|...|++++|+| ++++|++|+.|++|++
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCccee
Confidence            35667899999999999997 48999999999999999887654443   4788999999999 9999999999999999


Q ss_pred             EeCCCCeE-----EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE-ee----------ecCcccccC
Q 012367          377 WGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VD----------FHDRKKTSG  440 (465)
Q Consensus       377 wd~~~~~~-----~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~-~~----------~~~~~~~~~  440 (465)
                      |++.....     .....|...|.+++|+|++++|++|+.||.|++|++......... ..          .......+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            99865431     125568899999999999999999999999999998754432110 00          000112345


Q ss_pred             CceeeEEEeecCCc------c-ceeeeec
Q 012367          441 NKITGIQGRISKNY------D-NFRRFQT  462 (465)
Q Consensus       441 ~~It~~~f~p~gs~------d-~~~~~~~  462 (465)
                      ..|.+++|+|++.+      | .+++|+.
T Consensus       202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         202 GWVHGVCFSANGSRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             CcEEEEEeecccccccccccCCcceEEee
Confidence            77999999998654      3 3677764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-24  Score=209.37  Aligned_cols=234  Identities=18%  Similarity=0.310  Sum_probs=175.2

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec--CCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT--DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      +++ +|...|+||+|+|+|++||||+ ||.|+|||+.+.........  ...+.   .....+.+.......+.....+.
T Consensus        46 ~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~---~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          46 NTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD---NYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT---SBEEEEEECTTSSEEEEEESSSE
T ss_pred             EEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCC---CcEEEEEEcCCCCEEEEeecccc
Confidence            344 7999999999999999999998 89999999976433211110  00000   00111222222211111112221


Q ss_pred             --eeeec---CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367          294 --VFQIE---ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       294 --~~~~~---~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~  366 (465)
                        +|++.   ......+.+|...|.+++|+|++ ++++++.|+.|++||+.++++.... .|...|++++|+| ++.+++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~  199 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLW  199 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence              23332   22345677899999999999975 8899999999999999999988877 5889999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      +|+.|+.|++||+++++.+....+...|.+++|+|+++.|++|+.||.+++||+.......  ..      .+...|+++
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~------~~~~~i~~v  271 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--LH------LHESCVLSL  271 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--EC------CCSSCEEEE
T ss_pred             cccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc--cc------ccccccceE
Confidence            9999999999999999988888899999999999999999999999999999998776532  11      234679999


Q ss_pred             EEeecCCc------cc-eeeeecC
Q 012367          447 QGRISKNY------DN-FRRFQTP  463 (465)
Q Consensus       447 ~f~p~gs~------d~-~~~~~~p  463 (465)
                      +|+|++.+      |+ +++|+++
T Consensus       272 ~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         272 KFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETT
T ss_pred             EECCCCCEEEEEeCCCeEEEEECC
Confidence            99998643      43 7788765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.1e-24  Score=208.41  Aligned_cols=222  Identities=16%  Similarity=0.266  Sum_probs=160.0

Q ss_pred             CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec----CCC
Q 012367          190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT----DDG  265 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~----~~~  265 (465)
                      +......+++|..       ......+.+.+|.++|++++|+|+++++++|+.|++|++|+............    ...
T Consensus        72 sgs~Dg~v~iWd~-------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  144 (340)
T d1tbga_          72 SASQDGKLIIWDS-------YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG  144 (340)
T ss_dssp             EEETTTEEEEEET-------TTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSS
T ss_pred             EEECCCceeeeec-------ccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccc
Confidence            3344555666643       23344567789999999999999999999999999999999765322111100    000


Q ss_pred             C-----------cccccCCCeE----------------------Ee-ccCCCCceeEe-cCCc--eeee-cCCcceeeec
Q 012367          266 G-----------FGSNAKEGKI----------------------KF-GKKKSSHVPVV-IPDE--VFQI-EESPLQELHG  307 (465)
Q Consensus       266 ~-----------~~~~~~~~~~----------------------~~-~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~g  307 (465)
                      .           ..........                      .. ........... ....  +|++ ...++..+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence            0           0000000000                      00 00001111111 1111  2333 2456678889


Q ss_pred             cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      |.+.|.+++|+|++ +|++|+.|++|++||+.....+..+.   +...|++++|+| ++++|++|+.||.|++||+.+++
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CCCEEEEEECCCEEEEEECCCCc
Confidence            99999999999975 89999999999999999999888773   667899999999 99999999999999999999887


Q ss_pred             EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          384 VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       384 ~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      .+. +.+|...|++++|+|++++|++|+.||+|++||
T Consensus       304 ~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            765 778999999999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.2e-24  Score=205.70  Aligned_cols=219  Identities=18%  Similarity=0.198  Sum_probs=152.3

Q ss_pred             hhhhccC-CCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc--cccCCCeEEeccCCCCceeEe
Q 012367          215 SQEIQAH-KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG--SNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       215 ~~~l~~H-~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      ...+.+| ...|++++|+|  +|++||||+.||+|+|||+.................  .......+.+...+.......
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            3456677 56899999998  578999999999999999875433221111000000  000001111111111111111


Q ss_pred             cC-C---ceeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEc
Q 012367          290 IP-D---EVFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFN  358 (465)
Q Consensus       290 ~~-~---~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fs  358 (465)
                      .. .   .++.. ..+.+..+.+|...|.+++|+|++  ++++++.|+.|++||+...+....+    .|...|++++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            10 0   12222 245677888999999999999864  6889999999999999988876665    367789999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEe---eCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~s---pdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      |..+.+|++|+.|+.|++||+++++.+. +.+|...+..+.|+   |+|++|++|+.||.|+|||+.+++.. ..+..+.
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~  293 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV-QKWTLDK  293 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE-EEEECCT
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE-EEEEecC
Confidence            9557999999999999999999988765 66677777666665   68999999999999999999987653 3444443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.6e-23  Score=205.29  Aligned_cols=215  Identities=17%  Similarity=0.305  Sum_probs=162.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .+|++.|+||+|+|+|++||||+ |++|+|||+.++..............                           ...
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~---------------------------~~~  110 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK---------------------------DPE  110 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------------------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc---------------------------ccc
Confidence            37999999999999999999987 89999999988766544322111000                           000


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      ........+|...|.+++|+|++ +|++|+.||+|++||...++.+..+ .|...|.+++|++ ++..+++|+.++.|++
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeee
Confidence            11123345788999999999975 8999999999999999999988888 4899999999999 9999999999999999


Q ss_pred             EeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc-
Q 012367          377 WGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY-  454 (465)
Q Consensus       377 wd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~-  454 (465)
                      ||..+........+.....++.+.| ++++|++|+.||.|++|++.++...............+...|+++.|+|++.+ 
T Consensus       190 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  269 (388)
T d1erja_         190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  269 (388)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             eeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence            9999988877666666666666665 88999999999999999999876643322112222335578999999998654 


Q ss_pred             -----c-ceeeeec
Q 012367          455 -----D-NFRRFQT  462 (465)
Q Consensus       455 -----d-~~~~~~~  462 (465)
                           | .+++|+.
T Consensus       270 ~s~~~d~~i~iwd~  283 (388)
T d1erja_         270 VSGSLDRSVKLWNL  283 (388)
T ss_dssp             EEEETTSEEEEEEC
T ss_pred             EEEECCCcEEEEec
Confidence                 3 3677764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-23  Score=207.01  Aligned_cols=126  Identities=10%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             ccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-------CCCceEEEEEccCCCCEEEEEeCCCc---EEE
Q 012367          307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSIDGK---VRI  376 (465)
Q Consensus       307 gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-------h~~~V~~i~fsp~~~~~l~sgs~Dg~---I~i  376 (465)
                      .+...+.+++|+|+++|++|+.|++|+|||+.+++++..+.       |..+|++++|+| ++++|++|+.|++   |++
T Consensus       182 ~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeee
Confidence            34566889999999999999999999999999999877653       788999999999 9999999999975   999


Q ss_pred             EeCCCCeEEe--------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          377 WGVCEKRVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       377 wd~~~~~~~~--------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      ||+.++..+.              ..+|...|++++|+|+|++|++|+.||+|++||+.+++.. ..+..|.
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~-~~l~gH~  331 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-TTLNMHC  331 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-EEEECCG
T ss_pred             cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE-EEECCcC
Confidence            9999876553              2479999999999999999999999999999999988653 3444443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=3e-23  Score=199.38  Aligned_cols=163  Identities=18%  Similarity=0.262  Sum_probs=137.3

Q ss_pred             cchhhhccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~-LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ...+++.+|.+.|++|+|+|++++ |++|+.||+|++||+.+..                                    
T Consensus       137 ~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~------------------------------------  180 (311)
T d1nr0a1         137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK------------------------------------  180 (311)
T ss_dssp             CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE------------------------------------
T ss_pred             cccccccccccccccccccccceeeecccccccccccccccccc------------------------------------
Confidence            345678899999999999999985 8899999999999998743                                    


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--------CCCceEEEEEccCCC
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDD  362 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--------h~~~V~~i~fsp~~~  362 (465)
                               ....+.+|...|.+++|+|++ ++++++.|+.|++||+.++..+..+.        |...|++++|+| ++
T Consensus       181 ---------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~  250 (311)
T d1nr0a1         181 ---------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DG  250 (311)
T ss_dssp             ---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TS
T ss_pred             ---------cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CC
Confidence                     244556799999999999975 89999999999999999998887763        778999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEe-cccCCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          363 NYFISGSIDGKVRIWGVCEKRVVD-WADVRD-VISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       363 ~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      ++|++|+.||+|+|||+++++++. +..+.. ....+++.+++..|++++.||.|++||.+
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999999999999999998876 333322 23344556667789999999999999964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.8e-23  Score=195.50  Aligned_cols=183  Identities=21%  Similarity=0.399  Sum_probs=136.4

Q ss_pred             ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      ....+.+.+|...+.+++|+|++.+|++|+.|+.|++|++.+..............                 ......+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~  195 (317)
T d1vyhc1         133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV-----------------ECISWAP  195 (317)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-----------------EEEEECC
T ss_pred             ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCc-----------------eEEEEee
Confidence            34456778999999999999999999999999999999998765433222111000                 0000000


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      ..       ..................+..++++++.|++|++||+.+++++..+ .|...|.+++|+| ++++|++|+.
T Consensus       196 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~  267 (317)
T d1vyhc1         196 ES-------SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCAD  267 (317)
T ss_dssp             SC-------GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEET
T ss_pred             cc-------ccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEEC
Confidence            00       0000011111222222233457999999999999999999999988 5889999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd  419 (465)
                      ||.|+|||+.+++++. +.+|...|++++|+|++++|++|+.||+|+|||
T Consensus       268 dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999887654 778999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7.9e-23  Score=200.24  Aligned_cols=217  Identities=20%  Similarity=0.341  Sum_probs=151.3

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--cee
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVF  295 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  295 (465)
                      ..+|...|++|+|+|+|++|++|+.||+|++|+................+...      .+..............  .+|
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~------~~~~~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL------DYFPSGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE------EECTTSSEEEEEETTSEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccc------ccccccccccccccceeeeee
Confidence            45799999999999999999999999999999999877665544332221111      1111111111111111  122


Q ss_pred             eecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec--------CCCceEEEEEccCCCCEE
Q 012367          296 QIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       296 ~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~--------h~~~V~~i~fsp~~~~~l  365 (465)
                      +...........+.....++.+++ + .+|++++.|+.|++||+.++..+..+.        |...|++++|+| ++++|
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l  269 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSV  269 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEE
Confidence            333222233333445555666665 4 489999999999999999988777652        778999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCe-------------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeee
Q 012367          366 ISGSIDGKVRIWGVCEKR-------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~~-------------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~  432 (465)
                      ++|+.|+.|++||+.++.             ......|...|++++|+|+|++|++|+.||.|++||+.+++.. ..+..
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~-~~l~~  348 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-LMLQG  348 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-EEEEC
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-EEEeC
Confidence            999999999999997643             2235568889999999999999999999999999999987653 23433


Q ss_pred             cCcccccCCceeeEEE
Q 012367          433 HDRKKTSGNKITGIQG  448 (465)
Q Consensus       433 ~~~~~~~~~~It~~~f  448 (465)
                      |.      ..|+++.+
T Consensus       349 H~------~~V~~~~~  358 (388)
T d1erja_         349 HR------NSVISVAV  358 (388)
T ss_dssp             CS------SCEEEEEE
T ss_pred             CC------CCEEEEEE
Confidence            33      56666654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.6e-22  Score=190.26  Aligned_cols=237  Identities=15%  Similarity=0.267  Sum_probs=156.9

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee------eeeeecCCCCcccccCCCeEEeccCCC---
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA------SCKSFTDDGGFGSNAKEGKIKFGKKKS---  283 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---  283 (465)
                      .+.++|+||.++|++|+|+|    |+||+.||+|++||+.+...      .+..+.....+.....+..+.++....   
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~   79 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEF   79 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEEC
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccccc
Confidence            34578999999999999998    99999999999999876432      112222223333333333333332110   


Q ss_pred             ------------C-ceeEecCCceeee---cCCcceeeeccccceEEEEecCCCEEEEEeCC-CeEEEEeCCCCeEeEEe
Q 012367          284 ------------S-HVPVVIPDEVFQI---EESPLQELHGHKGDVLDLAWSNSNYLLSCSMD-KTVRMWQVGCNQCLNVF  346 (465)
Q Consensus       284 ------------~-~~~~~~~~~~~~~---~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~D-gtV~lWD~~~~~~l~~~  346 (465)
                                  . .........+..+   ....+..+. +...+.++..+. ..+++++.| +.|++|++........+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~  157 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDL  157 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             ccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccceeeeeeccC-cceeeeccccceeeeeeccccceeeee
Confidence                        0 0111111111111   112222222 223344443332 455555555 58999999877666655


Q ss_pred             --cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeC----------CCEEEEEEcC
Q 012367          347 --DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPD----------GKGFIVGSIT  412 (465)
Q Consensus       347 --~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spd----------g~~l~sgs~d  412 (465)
                        .|...|++++|+| ++.+|++|+.||.|++||+.++....  +..|...|++++|+|+          +.+|++|+.|
T Consensus       158 ~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         158 KTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             SSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             eeccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence              3777899999999 99999999999999999999987664  6789999999999875          4689999999


Q ss_pred             CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC-----cc-ceeeeec
Q 012367          413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN-----YD-NFRRFQT  462 (465)
Q Consensus       413 G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs-----~d-~~~~~~~  462 (465)
                      |+|++||+...........      .+...|+++.|+|++.     .| .+++|++
T Consensus       237 ~~i~iw~~~~~~~~~~~~~------~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         237 TNIFIYSVKRPMKIIKALN------AHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCEEEEESSCTTCCEEETT------SSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCeEEEEeC------CCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            9999999976544333222      2447899999998742     24 4777764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-22  Score=192.10  Aligned_cols=234  Identities=19%  Similarity=0.364  Sum_probs=154.6

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc----------cccCCCeEEecc
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG----------SNAKEGKIKFGK  280 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  280 (465)
                      ++++.+.|+||++.|.+ +++++|++|||||.||+|+|||+.+++.......+...+.          +...++.+..+.
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence            45566789999999865 3666899999999999999999988766544332221111          000111110000


Q ss_pred             CC------------------------------CCceeEe-------------------------------cC-C--ceee
Q 012367          281 KK------------------------------SSHVPVV-------------------------------IP-D--EVFQ  296 (465)
Q Consensus       281 ~~------------------------------~~~~~~~-------------------------------~~-~--~~~~  296 (465)
                      ..                              .....+.                               .. .  .+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            00                              0000000                               00 0  0111


Q ss_pred             e-cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367          297 I-EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (465)
Q Consensus       297 ~-~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I  374 (465)
                      . ....+..+.+|...+..+.+. ..++++++.|++|++||+..++++..+ .|...|.++.+++   ++|++|+.|+.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i  239 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTV  239 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCE
T ss_pred             cccceeeEEEcCcccccccccCC-CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEEEcCCCEE
Confidence            1 122345566777777666654 358999999999999999999998888 4788899888854   799999999999


Q ss_pred             EEEeCCCCeEEe-c---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367          375 RIWGVCEKRVVD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI  450 (465)
Q Consensus       375 ~iwd~~~~~~~~-~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p  450 (465)
                      ++||+...+... +   ..|...+.++++  +++++++|+.||+|++||+.+++.... +.... ...+...|++++|+|
T Consensus       240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~-~~~~~-~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRN-LVTLE-SGGSGGVVWRIRASN  315 (342)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEE-EEECT-TGGGTCEEEEEEECS
T ss_pred             EEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEE-Eeccc-CCCCCCCEEEEEECC
Confidence            999998876554 2   235556666655  566999999999999999998876433 22211 223457799999998


Q ss_pred             cCC
Q 012367          451 SKN  453 (465)
Q Consensus       451 ~gs  453 (465)
                      ++.
T Consensus       316 ~~~  318 (342)
T d2ovrb2         316 TKL  318 (342)
T ss_dssp             SEE
T ss_pred             CCC
Confidence            743

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.7e-23  Score=195.79  Aligned_cols=191  Identities=13%  Similarity=0.082  Sum_probs=134.4

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +..+.+++|++.|++|+|+|++++|||||.||+|+|||+.+....                                   
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-----------------------------------   46 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-----------------------------------   46 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------------------------------
Confidence            456788999999999999999999999999999999998753211                                   


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEec-CC--------------------
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HH--------------------  349 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~--------------------  349 (465)
                             ..+....+|.++|.+++|+|+ + +|++|+.|++|++|++..+....... +.                    
T Consensus        47 -------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (342)
T d1yfqa_          47 -------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS  119 (342)
T ss_dssp             -------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE
T ss_pred             -------eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccc
Confidence                   112333479999999999975 3 79999999999999987654333321 00                    


Q ss_pred             -----------------------------CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE----------------
Q 012367          350 -----------------------------NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV----------------  384 (465)
Q Consensus       350 -----------------------------~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~----------------  384 (465)
                                                   .......+.+ .+..+++++.|+.|++||+.....                
T Consensus       120 ~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (342)
T d1yfqa_         120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD  198 (342)
T ss_dssp             TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred             cccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceee
Confidence                                         0112223444 566788888888888888743210                


Q ss_pred             --------------------Ee--------------------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367          385 --------------------VD--------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFY  418 (465)
Q Consensus       385 --------------------~~--------------------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw  418 (465)
                                          ..                          ...|...|++++|+|++++|++|+.||.|++|
T Consensus       199 ~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             eEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEE
Confidence                                00                          01233457899999999999999999999999


Q ss_pred             EecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          419 KASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      |+.+.+.. .++..       ...++.+.|+|++.+
T Consensus       279 D~~~~~~l-~~~~~-------~~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         279 NLQTRKKI-KNFAK-------FNEDSVVKIACSDNI  306 (342)
T ss_dssp             ETTTTEEE-EECCC-------CSSSEEEEEEECSSE
T ss_pred             ECCCCcEE-EEecC-------CCCCEEEEEEeCCCE
Confidence            99987542 22211       123445667776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.3e-21  Score=187.19  Aligned_cols=194  Identities=21%  Similarity=0.382  Sum_probs=145.5

Q ss_pred             hhhhccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367          215 SQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       215 ~~~l~~H~~~I-~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      ..+|+||.+.| +|++|  +|++||||+.||+|+|||+.++                                       
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~---------------------------------------   43 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---------------------------------------   43 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT---------------------------------------
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC---------------------------------------
Confidence            35689999886 66666  6789999999999999999874                                       


Q ss_pred             eeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeC
Q 012367          294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                            +++..+.+|.+.|.+++|+|+++|++|+.|++|++|++....+.....   +...+....+.+ ++.++++++.
T Consensus        44 ------~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  116 (355)
T d1nexb2          44 ------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSR  116 (355)
T ss_dssp             ------EEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEET
T ss_pred             ------cEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccccccccc-ccceeeeecC
Confidence                  346678899999999999999999999999999999999888776663   222344555666 7777777777


Q ss_pred             CCcEEEEeCCCC---------------------------------------------------------------eEEe-
Q 012367          371 DGKVRIWGVCEK---------------------------------------------------------------RVVD-  386 (465)
Q Consensus       371 Dg~I~iwd~~~~---------------------------------------------------------------~~~~-  386 (465)
                      |+.|++||+.+.                                                               +.+. 
T Consensus       117 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  196 (355)
T d1nexb2         117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI  196 (355)
T ss_dssp             TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceee
Confidence            777777776432                                                               1111 


Q ss_pred             cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec----CCcc-ceeeee
Q 012367          387 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS----KNYD-NFRRFQ  461 (465)
Q Consensus       387 ~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~----gs~d-~~~~~~  461 (465)
                      ..++...+.++.|+|++..+++++.||.|++||+.++.... .+..      +...|+.+.+++.    ++.| .+++|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~------h~~~v~~~~~~~~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY-TLQG------HTALVGLLRLSDKFLVSAAADGSIRGWD  269 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE-EECC------CSSCCCEEEECSSEEEEECTTSEEEEEE
T ss_pred             eeccccccccccccccceeeecccccceEEeeecccccccc-cccc------ccccccccccccceeeeeeccccccccc
Confidence            23355667889999999999999999999999998876533 2222      3356777777653    4444 467776


Q ss_pred             cC
Q 012367          462 TP  463 (465)
Q Consensus       462 ~p  463 (465)
                      +.
T Consensus       270 ~~  271 (355)
T d1nexb2         270 AN  271 (355)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2e-21  Score=185.94  Aligned_cols=253  Identities=17%  Similarity=0.299  Sum_probs=166.6

Q ss_pred             cccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 012367          180 CMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK  259 (465)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~  259 (465)
                      |++...+...+......+++|..       ....+.+++.+|+++|++|+|+|+ .+|+||+.||+|++|++........
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~-------~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~   89 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDS-------INKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV   89 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEET-------TTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEEC-------CCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccc
Confidence            34333333333445566777643       233456778999999999999986 4899999999999999987554322


Q ss_pred             eecCCCC--------------cccccCCCeEEeccCCC------------------------------------------
Q 012367          260 SFTDDGG--------------FGSNAKEGKIKFGKKKS------------------------------------------  283 (465)
Q Consensus       260 ~~~~~~~--------------~~~~~~~~~~~~~~~~~------------------------------------------  283 (465)
                      .......              .......+.+.++....                                          
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  169 (355)
T d1nexb2          90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG  169 (355)
T ss_dssp             ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc
Confidence            2221111              01111111111111000                                          


Q ss_pred             --CceeEecC-Cc--eeee-cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEE
Q 012367          284 --SHVPVVIP-DE--VFQI-EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCV  355 (465)
Q Consensus       284 --~~~~~~~~-~~--~~~~-~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i  355 (465)
                        ........ ..  .|++ ..+.+....++...+.++.++|. .++++++.|++|++||+.++.++..+ .|...|.++
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~  249 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  249 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccc
Confidence              00000000 01  1222 23345566778889999999986 58999999999999999999998888 588899999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEE-EEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAI-CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv-~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      +|++   ++|++|+.||.|++||+.+..... ..|...+.++ +++|+++++++| .||.|++||+.++++....     
T Consensus       250 ~~~~---~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~-----  319 (355)
T d1nexb2         250 RLSD---KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN-----  319 (355)
T ss_dssp             EECS---SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC-----
T ss_pred             cccc---ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEE-----
Confidence            9964   799999999999999998876543 3444555554 566777766665 5899999999988653221     


Q ss_pred             cccccCCceeeEEEeec
Q 012367          435 RKKTSGNKITGIQGRIS  451 (465)
Q Consensus       435 ~~~~~~~~It~~~f~p~  451 (465)
                       ...+...|+++.|+|+
T Consensus       320 -~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         320 -ILKDADQIWSVNFKGK  335 (355)
T ss_dssp             -TTTTCSEEEEEEEETT
T ss_pred             -ecCCCCCEEEEEEcCC
Confidence             2234578999998875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=6e-21  Score=188.70  Aligned_cols=152  Identities=16%  Similarity=0.275  Sum_probs=122.1

Q ss_pred             hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (465)
Q Consensus       217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (465)
                      ....|...+++++|+|++ +||||+.||+|+|||+.++......                                    
T Consensus       179 ~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~------------------------------------  221 (393)
T d1sq9a_         179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF------------------------------------  221 (393)
T ss_dssp             CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE------------------------------------
T ss_pred             cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccc------------------------------------
Confidence            334677789999999998 8999999999999999876543221                                    


Q ss_pred             ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCe---EEEEeCCCCeEeEEe--------------cCCCceEEEEEc
Q 012367          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT---VRMWQVGCNQCLNVF--------------DHHNYVTCVQFN  358 (465)
Q Consensus       297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt---V~lWD~~~~~~l~~~--------------~h~~~V~~i~fs  358 (465)
                         .....+.+|...|.+++|+|++ +|++|+.|++   |++||+.+++++..+              +|.+.|++++|+
T Consensus       222 ---~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         222 ---ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             ---ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             ---ccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC
Confidence               2234567899999999999985 8999999874   999999999888776              388999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeE----EEEEeeCCCEEEEE
Q 012367          359 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVIS----AICYIPDGKGFIVG  409 (465)
Q Consensus       359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~----sv~~spdg~~l~sg  409 (465)
                      | ++++|+|||.|++|+|||+.+++.+. +.+|.+.|.    .++|+|++..++++
T Consensus       299 p-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         299 D-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             C-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9 99999999999999999999998775 667766554    35666666655433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-20  Score=175.60  Aligned_cols=255  Identities=17%  Similarity=0.330  Sum_probs=168.8

Q ss_pred             cccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 012367          180 CMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK  259 (465)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~  259 (465)
                      |++.+.+...+...+..+++|..       ....+.+++.+|+++|++|+|  ++++|+||+.||+|++|++........
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~-------~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDK-------NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEES-------SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEEC-------CCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence            33333333334445566666643       334556788899999999987  567999999999999999988665544


Q ss_pred             eecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec----CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEE
Q 012367          260 SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE----ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW  335 (465)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lW  335 (465)
                      ............................      ++...    ......+..|...|..+.+.+ ..+++++.|++|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~  163 (293)
T d1p22a2          91 LIHHCEAVLHLRFNNGMMVTCSKDRSIA------VWDMASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVW  163 (293)
T ss_dssp             ECCCCSCEEEEECCTTEEEEEETTSCEE------EEECSSSSCCEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEE
T ss_pred             ccccccccccccccccceeeccccccee------Eeeccccccccccccccccccccccceecc-cccccccCCCceeee
Confidence            4333222111111111111111111111      11111    122345567888888888765 467899999999999


Q ss_pred             eCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367          336 QVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITG  413 (465)
Q Consensus       336 D~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG  413 (465)
                      |+.+++++..+. +...|..+.++   +.++++++.|++|++||+++...+. ..++...+..  +.+++.+|++|+.||
T Consensus       164 d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg  238 (293)
T d1p22a2         164 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDG  238 (293)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTS
T ss_pred             cCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCC
Confidence            999999988884 77788888774   5789999999999999999887765 5566666654  567788999999999


Q ss_pred             cEEEEEecCCce--------eeeEeeecCcccccCCceeeEEEeec----CCccc-eeeee
Q 012367          414 TCHFYKASGNDL--------KLEKVDFHDRKKTSGNKITGIQGRIS----KNYDN-FRRFQ  461 (465)
Q Consensus       414 ~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~It~~~f~p~----gs~d~-~~~~~  461 (465)
                      .|++||+.....        ....+..      +...|+++.|.+.    ++.|+ +++|+
T Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~------H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         239 KIKVWDLVAALDPRAPAGTLCLRTLVE------HSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEEEEHHHHTSTTSCTTTTEEEEECC------CSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             EEEEEECCCCccccccCCceeeEEecC------CCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            999999864322        1222222      3467888877543    55565 67774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.8e-21  Score=184.00  Aligned_cols=165  Identities=18%  Similarity=0.305  Sum_probs=129.5

Q ss_pred             cchhhhccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~-LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (465)
                      .+.+.+.+|...|++++|+|++.+ +++++.|+.|++|++...+....                                
T Consensus       150 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~--------------------------------  197 (325)
T d1pgua1         150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--------------------------------  197 (325)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--------------------------------
T ss_pred             ccceeeeecccccccccccccccceEEEeeccccccccccccccccee--------------------------------
Confidence            455677899999999999999874 78899999999999876543221                                


Q ss_pred             CceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEc---cCCCCEE
Q 012367          292 DEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN---PIDDNYF  365 (465)
Q Consensus       292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fs---p~~~~~l  365 (465)
                                .....+|...|.+++|+|+  .+|++++.|+.|++||+++++++..+. |...+.++.|+   | ++.+|
T Consensus       198 ----------~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l  266 (325)
T d1pgua1         198 ----------DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF  266 (325)
T ss_dssp             ----------ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred             ----------cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEE
Confidence                      2223468889999999986  489999999999999999999999984 66665554444   4 78999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEe-cccCCC--CeEEEEEeeC-CCEEEEEEcCCcEEEEEe
Q 012367          366 ISGSIDGKVRIWGVCEKRVVD-WADVRD--VISAICYIPD-GKGFIVGSITGTCHFYKA  420 (465)
Q Consensus       366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~--~V~sv~~spd-g~~l~sgs~dG~v~iwd~  420 (465)
                      ++++.|+.|+|||+.+++++. +..+..  .+..+++.+. +..|++|+.||+|++||+
T Consensus       267 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            999999999999999988775 333333  3444444432 347899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.85  E-value=2e-20  Score=176.59  Aligned_cols=155  Identities=19%  Similarity=0.357  Sum_probs=123.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +...+.+++|+|++++|++|+.||.|++||+.+....                                           
T Consensus       135 ~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~-------------------------------------------  171 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS-------------------------------------------  171 (299)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE-------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-------------------------------------------
Confidence            3445788999999999999999999999998764321                                           


Q ss_pred             cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                       ......|...|.+++|+|++ +|++++.|+.|++||+.++..+...    .|...|++++|+| ++.+|++|+.|+.|+
T Consensus       172 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~  249 (299)
T d1nr0a2         172 -EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVI  249 (299)
T ss_dssp             -EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccceEEEcCCCEEE
Confidence             11223588999999999975 8999999999999999877654433    3788999999999 999999999999999


Q ss_pred             EEeCCCCe---EEecccC-CCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367          376 IWGVCEKR---VVDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (465)
Q Consensus       376 iwd~~~~~---~~~~~~~-~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~  421 (465)
                      |||+.++.   ......| ...|.+++| +++.+|++|+.||+|++||+.
T Consensus       250 iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         250 VWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99998653   2333344 445666654 567899999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7e-20  Score=171.97  Aligned_cols=200  Identities=12%  Similarity=0.163  Sum_probs=136.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee----eeeeecCCCCcccccCCCeEE-----------------
Q 012367          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----SCKSFTDDGGFGSNAKEGKIK-----------------  277 (465)
Q Consensus       219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------------  277 (465)
                      .+|++.|.+++|++++ .+++++.|++|++|++.....    ...................+.                 
T Consensus        43 ~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (287)
T d1pgua2          43 QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS  121 (287)
T ss_dssp             CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc
Confidence            5899999999999765 689999999999999765321    111111111111111111100                 


Q ss_pred             ----eccCCCCceeEecCCc---eeeecC-Ccce-eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367          278 ----FGKKKSSHVPVVIPDE---VFQIEE-SPLQ-ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-  346 (465)
Q Consensus       278 ----~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-  346 (465)
                          +...............   +|.+.. .... ....|.+.|++++|+|++ +|++|+.||.|++||+.++..+... 
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc
Confidence                0000111111111111   222211 1111 223577899999999985 8999999999999999998876653 


Q ss_pred             -cCCCceEEEEEccC---------CCCEEEEEeCCCcEEEEeCCC-CeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCc
Q 012367          347 -DHHNYVTCVQFNPI---------DDNYFISGSIDGKVRIWGVCE-KRVV-DWADVRDVISAICYIPDGKGFIVGSITGT  414 (465)
Q Consensus       347 -~h~~~V~~i~fsp~---------~~~~l~sgs~Dg~I~iwd~~~-~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~  414 (465)
                       .|...|.+++|+|.         ++.+|++|+.|++|+|||+.+ .+.+ .+.+|...|++++|+|++ .|++++.||+
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence             58899999999872         457999999999999999976 4444 467899999999999987 6899999999


Q ss_pred             EEEEEe
Q 012367          415 CHFYKA  420 (465)
Q Consensus       415 v~iwd~  420 (465)
                      |++|++
T Consensus       281 v~iW~i  286 (287)
T d1pgua2         281 IKRWNV  286 (287)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-19  Score=170.36  Aligned_cols=159  Identities=29%  Similarity=0.512  Sum_probs=133.3

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      .....+.+|...+.++.+  ++.+|++|+.||+|++||+...                                      
T Consensus       168 ~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~--------------------------------------  207 (342)
T d2ovrb2         168 TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG--------------------------------------  207 (342)
T ss_dssp             EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC--------------------------------------
T ss_pred             eeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccc--------------------------------------
Confidence            344667789888877766  6779999999999999998764                                      


Q ss_pred             ceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEE
Q 012367          293 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISG  368 (465)
Q Consensus       293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sg  368 (465)
                             +++..+.+|...|.++++++ ++|++++.|++|++||+...+....+.    |...+.++.++   ++++++|
T Consensus       208 -------~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~  276 (342)
T d2ovrb2         208 -------NCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITS  276 (342)
T ss_dssp             -------CEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEE
T ss_pred             -------eeeeEecccccceeEEecCC-CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEE
Confidence                   33556678999999998876 589999999999999999988877773    55677777774   5799999


Q ss_pred             eCCCcEEEEeCCCCeEEe-c-----ccCCCCeEEEEEeeCCCEEEEEEcCCc----EEEEEecC
Q 012367          369 SIDGKVRIWGVCEKRVVD-W-----ADVRDVISAICYIPDGKGFIVGSITGT----CHFYKASG  422 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~-~-----~~~~~~V~sv~~spdg~~l~sgs~dG~----v~iwd~~~  422 (465)
                      +.||+|+|||+++++.+. +     .+|...|++++|+|++.+|++|+.||+    +++||++.
T Consensus       277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999987764 2     357788999999999999999999996    99999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-18  Score=161.85  Aligned_cols=159  Identities=25%  Similarity=0.469  Sum_probs=114.5

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (465)
                      .+...+|...|+|++|  +|++||||+.||+|+|||+.+++.                                      
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~--------------------------------------   47 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC--------------------------------------   47 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE--------------------------------------
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcE--------------------------------------
Confidence            3445688999999875  789999999999999999987544                                      


Q ss_pred             eeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEE-----------------------------
Q 012367          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----------------------------  345 (465)
Q Consensus       295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~-----------------------------  345 (465)
                             +.++.+|.+.|++++|++ ++|++|+.|++|++|++..+.....                             
T Consensus        48 -------~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (293)
T d1p22a2          48 -------KRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV  119 (293)
T ss_dssp             -------EEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred             -------EEEEecCCCCEeeeeccc-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeE
Confidence                   344455555555555532 3555555566665555544322211                             


Q ss_pred             --------------e-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEE
Q 012367          346 --------------F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       346 --------------~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sg  409 (465)
                                    + .|...|.++.+.   ..++++++.|+.|++||+.+++.+. +.++...|..+.++  +..++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  194 (293)
T d1p22a2         120 WDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG  194 (293)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE
T ss_pred             eeccccccccccccccccccccccceec---ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEe
Confidence                          1 255566666664   4688899999999999999887665 66777788777665  5689999


Q ss_pred             EcCCcEEEEEecCCcee
Q 012367          410 SITGTCHFYKASGNDLK  426 (465)
Q Consensus       410 s~dG~v~iwd~~~~~~~  426 (465)
                      +.||.|++||+.+....
T Consensus       195 ~~dg~i~i~d~~~~~~~  211 (293)
T d1p22a2         195 SSDNTIRLWDIECGACL  211 (293)
T ss_dssp             ETTSCEEEEETTTCCEE
T ss_pred             cCCCEEEEEecccceee
Confidence            99999999999887653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.78  E-value=1.4e-18  Score=167.20  Aligned_cols=159  Identities=8%  Similarity=0.061  Sum_probs=138.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367          220 AHKGCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (465)
                      +|.+.|.+++|+|||++|++++.|.  .|++||+.++                                           
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-------------------------------------------   76 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-------------------------------------------   76 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-------------------------------------------
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-------------------------------------------
Confidence            7999999999999999998877654  7999999864                                           


Q ss_pred             cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEe------
Q 012367          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------  369 (465)
Q Consensus       298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs------  369 (465)
                         ....+.+|...|.+++|+|++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.++      
T Consensus        77 ---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~  152 (360)
T d1k32a3          77 ---KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGE  152 (360)
T ss_dssp             ---CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSST
T ss_pred             ---cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccc
Confidence               234456799999999999986 89999999999999999999888875 777899999999 999998654      


Q ss_pred             ----CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          370 ----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       370 ----~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                          .++.+++||+.+++......+...+..++|+|||+.|++++.++.+.+|+......
T Consensus       153 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             eeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence                34569999999999888888889999999999999999999999999999765543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=1.7e-17  Score=159.35  Aligned_cols=171  Identities=9%  Similarity=0.072  Sum_probs=137.1

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceee
Q 012367          227 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  305 (465)
Q Consensus       227 ~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (465)
                      .-.||| ||+++|+++. |.|.+||+.++..                                              ..+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~----------------------------------------------~~~   39 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYV----------------------------------------------LKV   39 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBE----------------------------------------------EEC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcE----------------------------------------------EEc
Confidence            467999 9999999875 7899999876422                                              122


Q ss_pred             eccccceEEEEecCCC-EEEEEeCC--CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367          306 HGHKGDVLDLAWSNSN-YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~D--gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~  382 (465)
                       +|...|.+++|+|++ .|++++.+  ..|++||+.++.......|...|.+++|+| ++++|++++.++.+++|++.++
T Consensus        40 -~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          40 -PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             -SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred             -cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc-cccccceecccccccccccccc
Confidence             688999999999987 66665554  379999999998887778999999999999 9999999999999999999988


Q ss_pred             eEEe-cccCCCCeEEEEEeeCCCEEEEEE----------cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          383 RVVD-WADVRDVISAICYIPDGKGFIVGS----------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       383 ~~~~-~~~~~~~V~sv~~spdg~~l~sgs----------~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      +... ...+...+.+++|+|||++|+.+.          .++.+++|++.+++...  +.      .....+.++.|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~------~~~~~~~~~~~spd  189 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA--AT------TENSHDYAPAFDAD  189 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE--CS------CSSSBEEEEEECTT
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee--ec------ccccccccccccCC
Confidence            8765 566788899999999999998654          34568999998875432  11      12345677788888


Q ss_pred             CCc
Q 012367          452 KNY  454 (465)
Q Consensus       452 gs~  454 (465)
                      |.+
T Consensus       190 g~~  192 (360)
T d1k32a3         190 SKN  192 (360)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.3e-16  Score=148.73  Aligned_cols=239  Identities=11%  Similarity=0.057  Sum_probs=144.7

Q ss_pred             cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeee
Q 012367          182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKS  260 (465)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~  260 (465)
                      ++..+...+...+..+++|.......    ........+|.++|++++|+|++ .+|++|+.||+|++|++.........
T Consensus        20 sp~~~~L~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~   95 (342)
T d1yfqa_          20 IPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             EGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred             eCCCCEEEEEECCCeEEEEEccCCCc----ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc
Confidence            44333333334456666664322211    11112233799999999999864 58999999999999998764433222


Q ss_pred             ecCCCC-------------cccccCCCeEEecc------------------------------CCCCceeEecCCc--ee
Q 012367          261 FTDDGG-------------FGSNAKEGKIKFGK------------------------------KKSSHVPVVIPDE--VF  295 (465)
Q Consensus       261 ~~~~~~-------------~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~--~~  295 (465)
                      ......             .........+.++.                              .............  +|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  175 (342)
T d1yfqa_          96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF  175 (342)
T ss_dssp             BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence            211111             00111111111110                              0000000000111  12


Q ss_pred             eecC----CcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeE---------eEE-------ecCCCceE
Q 012367          296 QIEE----SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC---------LNV-------FDHHNYVT  353 (465)
Q Consensus       296 ~~~~----~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~---------l~~-------~~h~~~V~  353 (465)
                      .+..    ........+...+.+..+.+.  ..+++++.||.+.+|+......         ...       ..|...|+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (342)
T d1yfqa_         176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             ecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccce
Confidence            2211    111122334455666666653  4899999999999999754321         111       12556799


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +++|+| ++++|+||+.||.|+|||+.+++.+....+...+..++|+|+|+.+++|+.|+++++|......+
T Consensus       256 ~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~~  326 (342)
T d1yfqa_         256 SIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI  326 (342)
T ss_dssp             EEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSCTTS
T ss_pred             eEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCCc
Confidence            999999 99999999999999999999998877555556677889999999999999999988887655443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=6e-16  Score=154.12  Aligned_cols=242  Identities=10%  Similarity=0.102  Sum_probs=130.9

Q ss_pred             ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC--CCcccccCCCeEEeccCCCCc
Q 012367          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--GGFGSNAKEGKIKFGKKKSSH  285 (465)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  285 (465)
                      +....+...++..|. .+..++|||||++|++++.||+|++||+.+.+.........  .+.......   .+...+...
T Consensus        48 D~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~---~~spDG~~l  123 (426)
T d1hzua2          48 DGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK---FKGYEDRYT  123 (426)
T ss_dssp             ETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC---STTCTTTEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee---eecCCCCEE
Confidence            444555566777774 58999999999999999999999999998865432211100  000000000   000000000


Q ss_pred             eeE-ecCCc--eeeecCCcceeeec-cccceEEEEecCCC--EEEEEeCCCe-----------EEEEeCCCCe--EeEEe
Q 012367          286 VPV-VIPDE--VFQIEESPLQELHG-HKGDVLDLAWSNSN--YLLSCSMDKT-----------VRMWQVGCNQ--CLNVF  346 (465)
Q Consensus       286 ~~~-~~~~~--~~~~~~~~~~~~~g-h~~~V~~l~~s~~~--~l~s~s~Dgt-----------V~lWD~~~~~--~l~~~  346 (465)
                      ... .....  +++........... |...+..+.+.+++  ..++++.|+.           +.+++.....  .+..+
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE
T ss_pred             EEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe
Confidence            000 01111  11222222222221 22222222232222  2233333333           3333333222  12233


Q ss_pred             cCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEE----------------------------------------
Q 012367          347 DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVV----------------------------------------  385 (465)
Q Consensus       347 ~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~----------------------------------------  385 (465)
                      .+...+..+.|+| ++++++++. .+..+.+|+..+++.+                                        
T Consensus       204 ~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         204 GAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             ECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             ccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence            5666778899999 777666654 3455667766543321                                        


Q ss_pred             ---------------ecccCCCCeEEEEEeeCCCEEEE-------EEcCCcEEEEEecCCceeeeEeeecC--cccccCC
Q 012367          386 ---------------DWADVRDVISAICYIPDGKGFIV-------GSITGTCHFYKASGNDLKLEKVDFHD--RKKTSGN  441 (465)
Q Consensus       386 ---------------~~~~~~~~V~sv~~spdg~~l~s-------gs~dG~v~iwd~~~~~~~~~~~~~~~--~~~~~~~  441 (465)
                                     .+.+|...+.+++|+|||++|++       +..+++|++||+.+++.....+....  ....+.+
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~  362 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK  362 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred             ccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc
Confidence                           13345667899999999999995       55689999999998876544322111  1122457


Q ss_pred             ceeeEEEeecCCc
Q 012367          442 KITGIQGRISKNY  454 (465)
Q Consensus       442 ~It~~~f~p~gs~  454 (465)
                      ++..++|+|+|.+
T Consensus       363 rv~~~~fSpDGk~  375 (426)
T d1hzua2         363 RVVQPEYNKRGDE  375 (426)
T ss_dssp             CEEEEEECSSSSE
T ss_pred             cEEEEEECCCCCE
Confidence            7999999999873

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.59  E-value=2.7e-13  Score=126.17  Aligned_cols=215  Identities=15%  Similarity=0.156  Sum_probs=149.8

Q ss_pred             CcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc---eeeec
Q 012367          223 GCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE---VFQIE  298 (465)
Q Consensus       223 ~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  298 (465)
                      +.+..++|+|+|++| ++++.++.|++||+.+..............       .+.+.............+.   ++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-------GVAVSPDGKQVYVTNMASSTLSVIDTT  104 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-------EEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-------ccccccccccccccccccceeeecccc
Confidence            457899999999987 567789999999999887765544322211       1111111111111111111   12222


Q ss_pred             C-CcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-CcE
Q 012367          299 E-SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-GKV  374 (465)
Q Consensus       299 ~-~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-g~I  374 (465)
                      . .....+ .+...+.++.++|++  .++++..++.+.+|+..++..+..+.+...+.++.++| ++.++++++.+ +.+
T Consensus       105 ~~~~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         105 SNTVAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSI  182 (301)
T ss_dssp             TTEEEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEE
T ss_pred             cceeeeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeec-cccceeeeccccccc
Confidence            2 223333 345667889999976  45677789999999999999999998888899999999 77777776655 677


Q ss_pred             EEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      .+|+...............+..++|++++..+++++.   ++.|++||+.++++.. .+..       ...+.++.|+|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~-~~~~-------~~~~~~va~spd  254 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPV-------GPDPAGIAVTPD  254 (301)
T ss_dssp             EEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EEEC-------CSSEEEEEECTT
T ss_pred             ccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE-EEcC-------CCCEEEEEEeCC
Confidence            7888888888777777778899999999998877654   4689999999876532 2322       245789999999


Q ss_pred             CCc
Q 012367          452 KNY  454 (465)
Q Consensus       452 gs~  454 (465)
                      |.+
T Consensus       255 g~~  257 (301)
T d1l0qa2         255 GKK  257 (301)
T ss_dssp             SSE
T ss_pred             CCE
Confidence            764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=4e-14  Score=141.30  Aligned_cols=178  Identities=9%  Similarity=0.029  Sum_probs=134.5

Q ss_pred             cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCce
Q 012367          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (465)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (465)
                      .+.........+..|. .+..++|||||++|++++.||+|++||+.+......                           
T Consensus        47 ~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~---------------------------   98 (432)
T d1qksa2          47 IDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---------------------------   98 (432)
T ss_dssp             EETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---------------------------
T ss_pred             EECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE---------------------------
Confidence            3455556667777664 699999999999999999999999999987532111                           


Q ss_pred             eEecCCceeeecCCcceeeeccccceEEEEecCCC-E-EEEEeCCCeEEEEeCCCCeEeEEec------------CCCce
Q 012367          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYV  352 (465)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~-l~s~s~DgtV~lWD~~~~~~l~~~~------------h~~~V  352 (465)
                                   ..+....+|.+.+.+..|+|++ + +++++.+++|++||..+++++..+.            +....
T Consensus        99 -------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2          99 -------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             -------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence                         0122233566777788889987 4 5788999999999999999887763            34456


Q ss_pred             EEEEEccCCCCE-EEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCcee
Q 012367          353 TCVQFNPIDDNY-FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK  426 (465)
Q Consensus       353 ~~i~fsp~~~~~-l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~  426 (465)
                      ..+.++| ++.+ +++...++.|.+||..+.+...  ...+...+..++|+|||+++++++. ++.+.++|..+.+..
T Consensus       166 ~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         166 AAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            7889999 6665 4666778999999998765432  4456678899999999998888876 457888888776553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.4e-13  Score=130.09  Aligned_cols=214  Identities=10%  Similarity=0.072  Sum_probs=132.7

Q ss_pred             cchhhhc--cCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeE-
Q 012367          213 YTSQEIQ--AHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV-  288 (465)
Q Consensus       213 ~~~~~l~--~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  288 (465)
                      ...+++.  .+...+.+++|+|||++| ++++.++.|.+||+.+++............. ......+.+.......... 
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~  100 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER-VKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE-EECTTCEEECTTSSEEEEEE
T ss_pred             eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc-ccceeeEEEcCCCcEEEEee
Confidence            3344443  345567899999999987 5677899999999999877655544322110 0001111111111100000 


Q ss_pred             -----------ecCCc--eeeecCC-cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-------
Q 012367          289 -----------VIPDE--VFQIEES-PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------  346 (465)
Q Consensus       289 -----------~~~~~--~~~~~~~-~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-------  346 (465)
                                 .....  +++.... ....+ .+...+..++|+|++ ++++++.  .+.+||..+++....+       
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~  177 (337)
T d1pbyb_         101 SPVRLELTHFEVQPTRVALYDAETLSRRKAF-EAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEA  177 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEEE-ECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTT
T ss_pred             cCCcceeeeccccccceeeccccCCeEEEec-cccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccc
Confidence                       00111  1222111 22222 244567788888876 5666553  4566776655444332       


Q ss_pred             ------------------------------------------------------------cCCCceEEEEEccCCCCEEE
Q 012367          347 ------------------------------------------------------------DHHNYVTCVQFNPIDDNYFI  366 (465)
Q Consensus       347 ------------------------------------------------------------~h~~~V~~i~fsp~~~~~l~  366 (465)
                                                                                  .+...+.++.++| ++.+++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  256 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAF  256 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEE
Confidence                                                                        1333455666777 677766


Q ss_pred             EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      .+  ++.|++||+.+++.+....+...+.+++|+|||++|++++.+|+|++||+.+.+. ..++...+
T Consensus       257 ~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~-v~~i~~~g  321 (337)
T d1pbyb_         257 GA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK-KGQVDLPG  321 (337)
T ss_dssp             EE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE-EEEEECGG
T ss_pred             Ec--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE-EEEEECCC
Confidence            55  5899999999999988778888899999999999999999999999999998654 33455444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=1.3e-13  Score=137.53  Aligned_cols=170  Identities=13%  Similarity=0.006  Sum_probs=126.2

Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecccc
Q 012367          231 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG  310 (465)
Q Consensus       231 spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~  310 (465)
                      +++.-++++.+.||+|.|||..+++.                                             +..+..| .
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v---------------------------------------------~~~~~~g-~   62 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEI---------------------------------------------KTVLDTG-Y   62 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE---------------------------------------------EEEEECS-S
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcE---------------------------------------------EEEEeCC-C
Confidence            33444568999999999999998543                                             4455555 3


Q ss_pred             ceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE--eEEec----CCCceEEEEEccCCCCEE-EEEeCCCcEEEEeCCCC
Q 012367          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVFD----HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEK  382 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~--l~~~~----h~~~V~~i~fsp~~~~~l-~sgs~Dg~I~iwd~~~~  382 (465)
                      .+..++|+|+| ++++++.|++|++||+.+++.  ...+.    |.+.+.+..|+| |++++ ++++.++.|+|||..++
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTC
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccc
Confidence            68999999986 888999999999999988763  33333    445566667788 88875 77888999999999998


Q ss_pred             eEEecc------------cCCCCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCCceee-eEeeecCcccccCCceeeEEE
Q 012367          383 RVVDWA------------DVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQG  448 (465)
Q Consensus       383 ~~~~~~------------~~~~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~It~~~f  448 (465)
                      +++...            .+.....++.++|+|..++ +...++.|.+|+..+.+... ..+.       .+....++.|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-------~g~~~~~~~~  214 (432)
T d1qksa2         142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-------AERFLHDGGL  214 (432)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-------CCSSEEEEEE
T ss_pred             cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-------ccCccccceE
Confidence            776421            2345577899999998764 45568999999988765432 2322       2356788999


Q ss_pred             eecCCc
Q 012367          449 RISKNY  454 (465)
Q Consensus       449 ~p~gs~  454 (465)
                      +|+|.|
T Consensus       215 spdg~~  220 (432)
T d1qksa2         215 DGSHRY  220 (432)
T ss_dssp             CTTSCE
T ss_pred             CCCCCE
Confidence            999886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.47  E-value=5.8e-12  Score=116.93  Aligned_cols=206  Identities=12%  Similarity=0.135  Sum_probs=137.6

Q ss_pred             cccchhhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367          211 ALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (465)
Q Consensus       211 ~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (465)
                      .....+.+..|.. +..++|++++.++ +++..++.+.+|+..+...............       ..+...+.......
T Consensus        63 t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG-------LALSPDGKKLYVTN  134 (301)
T ss_dssp             TTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE-------EEECTTSSEEEEEE
T ss_pred             CCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeeccccccceE-------EEeecCCCeeeeee
Confidence            3334455556654 6889999999855 4556788999999988766554433222111       11111111111111


Q ss_pred             cCCc---eeeec-CCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC
Q 012367          290 IPDE---VFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       290 ~~~~---~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~  363 (465)
                      ....   ++... ......+ .+...+..++++|++ .+++++ .++.+.+|+.........+.....+..++|++ +++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  212 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGT  212 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSS
T ss_pred             ccccceeeeeccccceeeec-ccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccc-ccc
Confidence            1111   11111 1222233 344567889999874 555554 45788899999888888888888889999999 888


Q ss_pred             EEEEEeC---CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCcee
Q 012367          364 YFISGSI---DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       364 ~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .++.++.   ++.|++||+.+++++....+...+.+++|+|||++| ++++.+|+|++||+.++++.
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            7766543   368999999999988766666789999999999987 56667999999999988663

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.47  E-value=8e-13  Score=125.20  Aligned_cols=108  Identities=7%  Similarity=0.102  Sum_probs=85.3

Q ss_pred             EEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee
Q 012367          324 LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  401 (465)
Q Consensus       324 ~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp  401 (465)
                      .++..++.+.+||+.++......  .+...+..+.++| ++.+++.+. ++.|++||..+++.+....+...+.+++|+|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~  301 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP-KDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK  301 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS-SCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC-CCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcC
Confidence            34455667888888887765544  4777888999999 666666665 4679999999999888777777899999999


Q ss_pred             CCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367          402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (465)
Q Consensus       402 dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~  434 (465)
                      ||++|++++.||.|++||+.+.+.. ..+.+.+
T Consensus       302 DG~~l~v~~~d~~v~v~D~~t~~~i-~~i~~p~  333 (346)
T d1jmxb_         302 KGDKLYLGGTFNDLAVFNPDTLEKV-KNIKLPG  333 (346)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEE-EEEECSS
T ss_pred             CCCEEEEEeCCCcEEEEECccCCEE-EEEECCC
Confidence            9999999999999999999987653 3455544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.44  E-value=2e-11  Score=117.47  Aligned_cols=217  Identities=7%  Similarity=-0.100  Sum_probs=122.9

Q ss_pred             cchhhhccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccC
Q 012367          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKK  281 (465)
Q Consensus       213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  281 (465)
                      ...+++.+|..+  .++|+|||++|++++          .++.|.|||..+++.......+....... .....+.+...
T Consensus        58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC
Confidence            334455555544  799999999999875          46789999999987765554433322111 11111222211


Q ss_pred             CCCc-eeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-----------
Q 012367          282 KSSH-VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-----------  347 (465)
Q Consensus       282 ~~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-----------  347 (465)
                      .... .....+.....+..........|...+.++.++|++  .+++.+.|+++.+|+...+.......           
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccce
Confidence            1111 111111111111111111122333444556666653  45566666777777655433222110           


Q ss_pred             ---------------------------------------CC----------CceEEEEEccCCCC----------EEEEE
Q 012367          348 ---------------------------------------HH----------NYVTCVQFNPIDDN----------YFISG  368 (465)
Q Consensus       348 ---------------------------------------h~----------~~V~~i~fsp~~~~----------~l~sg  368 (465)
                                                             +.          .....++++| ++.          .+++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~  294 (373)
T d2madh_         216 TQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             eeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEee
Confidence                                                   00          0111233333 333          34455


Q ss_pred             eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCE--EEEEEcCCcEEEEEecCCceeeeEeeec
Q 012367          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG--FIVGSITGTCHFYKASGNDLKLEKVDFH  433 (465)
Q Consensus       369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~--l~sgs~dG~v~iwd~~~~~~~~~~~~~~  433 (465)
                      ..++.|.+||..+++.+....+...+.+++|+|||+.  +++++.||.|++||+.+++.. ..+..+
T Consensus       295 ~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~-~~~~~~  360 (373)
T d2madh_         295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD-QSTVEL  360 (373)
T ss_pred             cCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE-EEECCC
Confidence            6677899999999998887788888999999999984  467889999999999998763 344333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.43  E-value=9.1e-13  Score=130.66  Aligned_cols=172  Identities=15%  Similarity=0.046  Sum_probs=113.9

Q ss_pred             ECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeec
Q 012367          230 FSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  307 (465)
Q Consensus       230 fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  307 (465)
                      ++++.+  ++++++.||+|+|||+.+++                                             .+.++..
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~---------------------------------------------~~~~l~~   60 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK---------------------------------------------IVKVIDT   60 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS---------------------------------------------EEEEEEC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc---------------------------------------------EEEEEeC
Confidence            444433  67889999999999998753                                             3555666


Q ss_pred             cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE--e----cCCCceEEEEEccCCCCEEE-EEeCCCcEEEEeC
Q 012367          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--F----DHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGV  379 (465)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~--~----~h~~~V~~i~fsp~~~~~l~-sgs~Dg~I~iwd~  379 (465)
                      | ..+..++|+|+| +|++++.|++|++||+.++++...  +    .|.+.+.+++|+| ++++++ ++..++.+++||.
T Consensus        61 g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          61 G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEET
T ss_pred             C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcC
Confidence            5 358999999986 788999999999999998875433  3    2555667778889 888864 5557899999999


Q ss_pred             CCCeEEe-cccCCCCe-----------EEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          380 CEKRVVD-WADVRDVI-----------SAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       380 ~~~~~~~-~~~~~~~V-----------~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      .++.+.. ...+...+           ..+.+++++..++.... .+.+.+++.........      ........+.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~  212 (426)
T d1hzua2         139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV------TSIGAAPFLADG  212 (426)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE------EEEECCSSEEEE
T ss_pred             CccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee------EEeccCCccEee
Confidence            9987665 33333334           44444555544444333 23333333332221111      112245678889


Q ss_pred             EEeecCCc
Q 012367          447 QGRISKNY  454 (465)
Q Consensus       447 ~f~p~gs~  454 (465)
                      .|+|++.|
T Consensus       213 ~~~~~g~~  220 (426)
T d1hzua2         213 GWDSSHRY  220 (426)
T ss_dssp             EECTTSCE
T ss_pred             eECCCCcE
Confidence            99998765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=2.1e-12  Score=121.80  Aligned_cols=146  Identities=8%  Similarity=0.050  Sum_probs=115.3

Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEE
Q 012367          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  314 (465)
Q Consensus       235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~  314 (465)
                      .||++++.|++|+|||+.+.+......                                           ...+...+.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~-------------------------------------------~~~~~~~~~~   38 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVIT-------------------------------------------IADAGPTPMV   38 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE-------------------------------------------CTTCTTCCCC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEE-------------------------------------------CCCCCCCccE
Confidence            489999999999999999865432211                                           1123455778


Q ss_pred             EEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecC------CCceEEEEEccCCCCEEEEEe------------CCCcE
Q 012367          315 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDH------HNYVTCVQFNPIDDNYFISGS------------IDGKV  374 (465)
Q Consensus       315 l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h------~~~V~~i~fsp~~~~~l~sgs------------~Dg~I  374 (465)
                      ++|+|++ ++ ++++.++.|.+||+.+++.+..+..      ...+..++|+| +++++++++            .+..+
T Consensus        39 i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~  117 (337)
T d1pbyb_          39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccce
Confidence            9999986 44 5778899999999999999888742      22456789999 999888776            36789


Q ss_pred             EEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      .+||..++.......+...+..++|+|||+++++++.  .+.+||..+++..
T Consensus       118 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~  167 (337)
T d1pbyb_         118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLV  167 (337)
T ss_dssp             EEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEE
T ss_pred             eeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEE
Confidence            9999999998887777788999999999999999864  4678999887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.9e-11  Score=112.33  Aligned_cols=146  Identities=14%  Similarity=0.157  Sum_probs=103.5

Q ss_pred             ccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEe----EEecCCCceEEEEEccCCCCEEEEEeC-CCcEEEEeC
Q 012367          307 GHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCL----NVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV  379 (465)
Q Consensus       307 gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l----~~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~  379 (465)
                      .|.+.|.+|+|+|++ +| +++..|+.|++|++......    ....+...+..++|+| +++++++++. ++.|.+|+.
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeecc
Confidence            577889999999996 55 45556899999999765432    2234566788999999 9999988875 678999988


Q ss_pred             CCCeEE---ecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367          380 CEKRVV---DWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY  454 (465)
Q Consensus       380 ~~~~~~---~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~  454 (465)
                      ......   ....+...+.++.++|+++++++++. +..+.+|+.............. .....+.....+.|++++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE-VTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-EECSTTCCEEEEEECTTSSE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee-eeeecCCCccEEEEecccee
Confidence            765543   34557778899999999999888875 5679999988765443321111 11223344566777776654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.26  E-value=1.4e-11  Score=116.44  Aligned_cols=150  Identities=6%  Similarity=-0.021  Sum_probs=112.2

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-
Q 012367          228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-  306 (465)
Q Consensus       228 l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  306 (465)
                      ++|+++++||++++.|++|.|||+.+.+.                                             +.++. 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~---------------------------------------------~~t~~~   36 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------------------------YKSCVM   36 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEEC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE---------------------------------------------EEEEEc
Confidence            57899999999999999999999998644                                             33333 


Q ss_pred             ccccceEEEEecCCC-E-EEEEeCCCeEEEEeCCCCeEeEEecCC-------CceEEEEEccCCCCEEEEEe--------
Q 012367          307 GHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGS--------  369 (465)
Q Consensus       307 gh~~~V~~l~~s~~~-~-l~s~s~DgtV~lWD~~~~~~l~~~~h~-------~~V~~i~fsp~~~~~l~sgs--------  369 (465)
                      .|...+.+++|+|++ + +++++.++.|++||+.+++.+..+...       ..+..++|+| +++++++++        
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLND  115 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSS
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceee
Confidence            345567899999986 4 467778999999999999998887532       2356889999 999887765        


Q ss_pred             ----CCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          370 ----IDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       370 ----~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                          .++.+.+||..+++...   .......+..+.+++++..+++   ++.+.+|++.+++..
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  176 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYT  176 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEE
T ss_pred             eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEE
Confidence                46788999987765432   2223455667777888776654   356889998876553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.3e-09  Score=102.19  Aligned_cols=192  Identities=10%  Similarity=0.134  Sum_probs=129.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .|.+.|..|+|||||++|++++ .|+.|++|++........                                       
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~---------------------------------------   74 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------------------------   74 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------------------------
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE---------------------------------------
Confidence            6889999999999999885554 589999999875322110                                       


Q ss_pred             CCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeC-CC
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSI-DG  372 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~-Dg  372 (465)
                         ......+...+..++|+|++ +|++++ .+++|.+|+..........   .+...+.++.|+| +++++++++. +.
T Consensus        75 ---~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~  150 (333)
T d1ri6a_          75 ---FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQD  150 (333)
T ss_dssp             ---EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGT
T ss_pred             ---EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccc
Confidence               01111234456789999986 666665 5779999998776654443   4677889999999 8888887775 45


Q ss_pred             cEEEEeCCCCeEE-------ecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeee---EeeecCcccccCC
Q 012367          373 KVRIWGVCEKRVV-------DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE---KVDFHDRKKTSGN  441 (465)
Q Consensus       373 ~I~iwd~~~~~~~-------~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~---~~~~~~~~~~~~~  441 (465)
                      .|.+|+.......       ...........++|++++..++... ..+...+|+.........   .............
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            7999998664321       1223455678999999999887665 456778888765443332   2222222223345


Q ss_pred             ceeeEEEeecCCc
Q 012367          442 KITGIQGRISKNY  454 (465)
Q Consensus       442 ~It~~~f~p~gs~  454 (465)
                      ....+.+++++.+
T Consensus       231 ~~~~~~~s~d~~~  243 (333)
T d1ri6a_         231 WAADIHITPDGRH  243 (333)
T ss_dssp             CEEEEEECTTSSE
T ss_pred             cceeEEEecccCc
Confidence            5666777777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=5.5e-10  Score=106.11  Aligned_cols=198  Identities=11%  Similarity=-0.022  Sum_probs=119.7

Q ss_pred             EEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccCCCCceeEecCC--ceeeecC
Q 012367          225 IWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKKKSSHVPVVIPD--EVFQIEE  299 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  299 (465)
                      ...++|+|+|++++.++  .+..+.+|+..+................. .....+.+..... ...+....  .......
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS-LAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC-EEEEECCSSSCCEEEEC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCC-EEEEEecCCCeEEEEec
Confidence            35689999999877764  56789999999877655443322111100 0111111111111 11111000  0000000


Q ss_pred             CcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEE--ec-----------CCCceEEEEEccCCCCEE
Q 012367          300 SPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNV--FD-----------HHNYVTCVQFNPIDDNYF  365 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~--~~-----------h~~~V~~i~fsp~~~~~l  365 (465)
                      .  .....+...+....+.+ ++.++.++.++.+.+|++..+.....  ..           .......++++| ++..+
T Consensus       187 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~  263 (355)
T d2bbkh_         187 E--VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRI  263 (355)
T ss_dssp             C--CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEE
T ss_pred             c--cccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeE
Confidence            0  00112334444555654 46889999999999999987754221  11           112334578888 87777


Q ss_pred             EEEeCC----------CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC--EEEEEEcCCcEEEEEecCCcee
Q 012367          366 ISGSID----------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK--GFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       366 ~sgs~D----------g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~--~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      +..+.+          ..|.+||..+++.+....+...+.+++|+|||+  ++++++.|+.|++||+.+++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            665543          369999999998887666667799999999998  3456677999999999988763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.99  E-value=5.9e-09  Score=100.22  Aligned_cols=199  Identities=7%  Similarity=-0.081  Sum_probs=114.0

Q ss_pred             EEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367          226 WTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (465)
Q Consensus       226 ~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
                      ..++|+|||++|+.+. .++.|.+||+.+.........+........................+................
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            3689999999988776 579999999999877665544332211111111111111111111111111100000001112


Q ss_pred             eeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-------------CCCceEEEEEccCCCCEEEEEeCC
Q 012367          305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------------HHNYVTCVQFNPIDDNYFISGSID  371 (465)
Q Consensus       305 ~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-------------h~~~V~~i~fsp~~~~~l~sgs~D  371 (465)
                      +..+...+....+.+++.++. ...+.+.++++..+.......             .......++++| ++..++....+
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~  284 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVE  284 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEE
T ss_pred             ccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecC
Confidence            233444555566666664443 234566677766554433221             111223577888 66655443222


Q ss_pred             ---------CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCE--EEEEEcCCcEEEEEecCCcee
Q 012367          372 ---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG--FIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       372 ---------g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~--l~sgs~dG~v~iwd~~~~~~~  426 (465)
                               ..|.+||..+++.+....+...+.+++|+|||+.  ++++..++.|++||..+++..
T Consensus       285 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         285 HSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                     3589999999998876667778999999999973  456667899999999988763

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=1.9e-09  Score=107.46  Aligned_cols=150  Identities=12%  Similarity=0.102  Sum_probs=112.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee
Q 012367          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (465)
Q Consensus       227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (465)
                      .+.|.+++++++.  .|+.|.+||+.++.......                                        -..+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~----------------------------------------~~~~~   58 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLE----------------------------------------NSTFD   58 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEEC----------------------------------------TTTTT
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEc----------------------------------------hhhhh
Confidence            5789999988874  57889999999865432110                                        12344


Q ss_pred             ccccceEEEEecCCC-EEEEEeC---------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367          307 GHKGDVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (465)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~---------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i  376 (465)
                      .|...|.++.|+||+ +|+.++.         ++.+.|||+.+++......+...+..+.|+| +++++|... ++.+.+
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~  136 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYV  136 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc-CcceeeEee-cccceE
Confidence            677889999999986 6776643         5678999999998766557888999999999 999999865 788999


Q ss_pred             EeCCCCeEEeccc-------------------CCCCeEEEEEeeCCCEEEEEEcCCc-EEEEEe
Q 012367          377 WGVCEKRVVDWAD-------------------VRDVISAICYIPDGKGFIVGSITGT-CHFYKA  420 (465)
Q Consensus       377 wd~~~~~~~~~~~-------------------~~~~V~sv~~spdg~~l~sgs~dG~-v~iwd~  420 (465)
                      |+..++.......                   .......+.|+|||+.|+....|.+ +..|.+
T Consensus       137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            9999887654221                   1233566889999999999887544 555543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.94  E-value=3.9e-08  Score=93.83  Aligned_cols=81  Identities=7%  Similarity=-0.008  Sum_probs=69.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC--EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEE
Q 012367          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI  397 (465)
Q Consensus       321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~--~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv  397 (465)
                      ..+++...+++|.+||+.+++.+..+.+...+.+++|+| |++  ++++++.|++|+|||+.+++.+. +..+....+.+
T Consensus       289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         289 SAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             ceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence            356677788899999999999999999999999999999 887  45788999999999999999887 44577778888


Q ss_pred             EEeeC
Q 012367          398 CYIPD  402 (465)
Q Consensus       398 ~~spd  402 (465)
                      ++.++
T Consensus       368 ~~~~~  372 (373)
T d2madh_         368 SVMNE  372 (373)
T ss_pred             EEecC
Confidence            87654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=4.6e-08  Score=92.39  Aligned_cols=226  Identities=8%  Similarity=0.018  Sum_probs=125.7

Q ss_pred             hhhhccCCCcEEEEEECCCCCEEEEE----------eCCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccCCC
Q 012367          215 SQEIQAHKGCIWTLKFSPDGRYLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKKKS  283 (465)
Q Consensus       215 ~~~l~~H~~~I~~l~fspdg~~LaSg----------s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  283 (465)
                      ..++..+..+  .++|||||++|+.+          +.|+.|++||..++................ .....+.+...+.
T Consensus        41 ~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          41 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence            3444444443  79999999988764          458899999999987766554443322111 1111222222221


Q ss_pred             CceeEe-cCCc---eeeec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-------cCCCc
Q 012367          284 SHVPVV-IPDE---VFQIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-------DHHNY  351 (465)
Q Consensus       284 ~~~~~~-~~~~---~~~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-------~h~~~  351 (465)
                      ...... ....   ++... .+.+..+..+....  +........++.+.|+...++.......+..+       .+...
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  196 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL  196 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred             eeEEecCCCCceeeeeecCCCcEeeEEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce
Confidence            111111 1111   11111 12222232222111  11112234455566666666655444333322       13344


Q ss_pred             eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc---C----------CCCeEEEEEeeCCCEEEEEEcCC-----
Q 012367          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---V----------RDVISAICYIPDGKGFIVGSITG-----  413 (465)
Q Consensus       352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~---~----------~~~V~sv~~spdg~~l~sgs~dG-----  413 (465)
                      +....+.+ ++..++.++.++.+++|++..+.+..+..   +          ......++++|++..++....++     
T Consensus       197 ~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         197 INHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             CSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            66677877 78888899999999999998876432211   1          12345688999999888776543     


Q ss_pred             -----cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367          414 -----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN  453 (465)
Q Consensus       414 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs  453 (465)
                           .|.+||+.+++... .+...       ..+.+++|+|+|.
T Consensus       276 ~~~~~~v~v~d~~t~~~~~-~~~~~-------~~~~~~a~spDG~  312 (355)
T d2bbkh_         276 KTASRFVVVLDAKTGERLA-KFEMG-------HEIDSINVSQDEK  312 (355)
T ss_dssp             TSCEEEEEEEETTTCCEEE-EEEEE-------EEECEEEECCSSS
T ss_pred             cCCCCeEEEEeCCCCcEEE-EecCC-------CCEEEEEEcCCCC
Confidence                 68999999876532 33222       3578899999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=1.4e-08  Score=100.96  Aligned_cols=144  Identities=6%  Similarity=0.094  Sum_probs=108.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec------CCCceEEEEEccCCCCEEEEEeC---------CCcEEEEe
Q 012367          314 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWG  378 (465)
Q Consensus       314 ~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~------h~~~V~~i~fsp~~~~~l~sgs~---------Dg~I~iwd  378 (465)
                      .+.|.+++.++. ..|+.+.+||+.+++....+.      |...|.++.|+| |+++|+.++.         ++.+.|||
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEE
Confidence            467888876555 357889999999998876663      446799999999 9999998753         56789999


Q ss_pred             CCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc-----------ccCCceeeEE
Q 012367          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----------TSGNKITGIQ  447 (465)
Q Consensus       379 ~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~It~~~  447 (465)
                      +.++++..+..+...+..+.|+|||+.||.. .++.+++|+..++..............           .......++.
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9999988899999999999999999999985 577899999988765432211111000           0123456788


Q ss_pred             EeecCCccceeee
Q 012367          448 GRISKNYDNFRRF  460 (465)
Q Consensus       448 f~p~gs~d~~~~~  460 (465)
                      |+|+|.+-.+...
T Consensus       178 wSPDGk~ia~~~~  190 (470)
T d2bgra1         178 WSPNGTFLAYAQF  190 (470)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCccceeEe
Confidence            9999987655433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.42  E-value=1.2e-06  Score=85.46  Aligned_cols=158  Identities=14%  Similarity=0.084  Sum_probs=109.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367          220 AHKGCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (465)
Q Consensus       220 ~H~~~I~~l~fspdg~~LaSg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (465)
                      .|...+....++|||++|+.. ..++.|.++|+.+.+.......                                    
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i------------------------------------  112 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI------------------------------------  112 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC------------------------------------
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec------------------------------------
Confidence            566677788889999988555 5788999999998654322111                                    


Q ss_pred             CCcceeeeccccceEEEEecCCC---EEEEEeCCC-----------------eEEEEeCCCCeEeEEecCCCceEEEEEc
Q 012367          299 ESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDK-----------------TVRMWQVGCNQCLNVFDHHNYVTCVQFN  358 (465)
Q Consensus       299 ~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~Dg-----------------tV~lWD~~~~~~l~~~~h~~~V~~i~fs  358 (465)
                              .+...+..++++|++   +++..+.+.                 .+..+|..+......+.....+..+.|+
T Consensus       113 --------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~s  184 (441)
T d1qnia2         113 --------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDAD  184 (441)
T ss_dssp             --------TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEEC
T ss_pred             --------CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEEC
Confidence                    234566777887764   444444332                 2456888888887777666677889999


Q ss_pred             cCCCCEEEEEeCC-----------------------------------------CcEEEEeCCCCeEEecccCCCCeEEE
Q 012367          359 PIDDNYFISGSID-----------------------------------------GKVRIWGVCEKRVVDWADVRDVISAI  397 (465)
Q Consensus       359 p~~~~~l~sgs~D-----------------------------------------g~I~iwd~~~~~~~~~~~~~~~V~sv  397 (465)
                      | +++++++.+.+                                         +.+.|++.....++...........+
T Consensus       185 p-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv  263 (441)
T d1qnia2         185 Y-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGL  263 (441)
T ss_dssp             S-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCE
T ss_pred             C-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCc
Confidence            9 88888877654                                         23444444444444444445557789


Q ss_pred             EEeeCCCEEEE-EEcCCcEEEEEecC
Q 012367          398 CYIPDGKGFIV-GSITGTCHFYKASG  422 (465)
Q Consensus       398 ~~spdg~~l~s-gs~dG~v~iwd~~~  422 (465)
                      .++|||+++++ +..+++|.+||+..
T Consensus       264 ~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         264 NTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             eECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            99999998755 56799999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=0.00011  Score=65.70  Aligned_cols=201  Identities=10%  Similarity=0.083  Sum_probs=107.6

Q ss_pred             hhhccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDG---VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +.+..+...+..-+|||||++||-.....   .+.+.+..................       ......+..........
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~spdg~~i~~~~~~~  104 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA-------PAFSPDGSKLAFALSKT  104 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEE-------EEECTTSSEEEEEECTT
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeeccccc-------ceecCCCCeeeEeeecC
Confidence            34445677788999999999998665433   355555554433222211111100       00111111111111000


Q ss_pred             -c--e--eeecCCcceeeeccccceEEEEecCCC--EEEEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCC
Q 012367          293 -E--V--FQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN  363 (465)
Q Consensus       293 -~--~--~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~  363 (465)
                       .  .  +............+........+++++  .+++...++  .|.+.++..+.......+........|+| ++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~  183 (269)
T d2hqsa1         105 GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGK  183 (269)
T ss_dssp             SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSS
T ss_pred             CccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccccc-ccc
Confidence             0  0  000111112222233333444555543  555555555  45566666665444445666778889999 888


Q ss_pred             EEEEEeCCC---cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCce
Q 012367          364 YFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDL  425 (465)
Q Consensus       364 ~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~  425 (465)
                      .++..+.++   .|.+.+...+.. .............|+|||+.|+..+..   +.++++++.++..
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             eeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            887766554   345556555544 334455567788999999998766543   4678888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.38  E-value=1.2e-05  Score=76.75  Aligned_cols=162  Identities=10%  Similarity=0.082  Sum_probs=103.4

Q ss_pred             EEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          225 IWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      +.++.|+|+|++|+++.. ...|.+|++.........                                       ....
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~---------------------------------------~~~~  187 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV---------------------------------------GSVD  187 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE---------------------------------------EEEE
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec---------------------------------------ccee
Confidence            789999999998888764 446788876532111000                                       0000


Q ss_pred             eeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec--------------------CCCceEEEEEccCC
Q 012367          304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPID  361 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~--------------------h~~~V~~i~fsp~~  361 (465)
                       ..........++|+|++  ..++.-.+++|.+|++..+.......                    +......+.++| +
T Consensus       188 -~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-d  265 (365)
T d1jofa_         188 -APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-S  265 (365)
T ss_dssp             -CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-T
T ss_pred             -ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-C
Confidence             01123466789999986  34566678999999987654322111                    112356789999 9


Q ss_pred             CCEEEEEeC-C-----CcEEEEeCCC-CeEE------ecccCCCCeEEEEEee-CCCEEEEEE-cCCcEEEEEecCCcee
Q 012367          362 DNYFISGSI-D-----GKVRIWGVCE-KRVV------DWADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLK  426 (465)
Q Consensus       362 ~~~l~sgs~-D-----g~I~iwd~~~-~~~~------~~~~~~~~V~sv~~sp-dg~~l~sgs-~dG~v~iwd~~~~~~~  426 (465)
                      +++++++.. +     ..|..|++.. +.+.      ..........+++++| +|++|+++. .++.|.+|+++...+.
T Consensus       266 G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~  345 (365)
T d1jofa_         266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred             CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCc
Confidence            999887643 2     2377777653 2221      1222345678899998 899887775 5799999999877654


Q ss_pred             e
Q 012367          427 L  427 (465)
Q Consensus       427 ~  427 (465)
                      .
T Consensus       346 ~  346 (365)
T d1jofa_         346 R  346 (365)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.33  E-value=2.6e-05  Score=72.09  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      .+..++++|||+++++...+++|..|+....                                               ..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-----------------------------------------------~~   61 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------------------------QQ   61 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------------------------EE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-----------------------------------------------EE
Confidence            4788999999999999999998888875532                                               11


Q ss_pred             eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC--CeEeE--EecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~--~~~l~--~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      .+......+.+++|++++ ++++...++.+.+|+...  +....  ..........+++.+ +++++++.+.++.+..+|
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeee
Confidence            122344567889999875 666666777777776543  22222  223455678888888 888888777777777776


Q ss_pred             CCCC
Q 012367          379 VCEK  382 (465)
Q Consensus       379 ~~~~  382 (465)
                      ..++
T Consensus       141 ~~~~  144 (302)
T d2p4oa1         141 VVQP  144 (302)
T ss_dssp             TTTT
T ss_pred             ccCC
Confidence            6543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.30  E-value=0.00017  Score=65.57  Aligned_cols=220  Identities=8%  Similarity=0.067  Sum_probs=127.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CC-ce--eeecCC
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PD-EV--FQIEES  300 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~~~  300 (465)
                      -+.|+++++|+.+++-...+.|++||... .....................+.............. .. .+  +.....
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  103 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ  103 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence            57999999999888877888999999764 322222111110000000001111111111111111 11 11  111122


Q ss_pred             cceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367          301 PLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (465)
Q Consensus       301 ~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~  375 (465)
                      ....+. .+......+++.+++ ++++....+.+.+++.. ++.+..+.   +......+++.+ +++++++....+.|+
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVK  181 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc-ceeEEeeecccccee
Confidence            222332 234556778888775 55555566778888864 56667763   556788999999 889999988899999


Q ss_pred             EEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          376 IWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       376 iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      +||.....+..+  .+.......|++.|+|+.+++-.. ++.|.+|+..+ ++. ..+....    ......++++.|+|
T Consensus       182 ~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~~~-~~~~~~~----~~~~p~~vav~~dG  255 (279)
T d1q7fa_         182 VFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLI-SALESKV----KHAQCFDVALMDDG  255 (279)
T ss_dssp             EEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEE-EEEEESS----CCSCEEEEEEETTT
T ss_pred             eeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC-CEE-EEEeCCC----CCCCEeEEEEeCCC
Confidence            999766544443  234556889999999997776554 45799998654 332 2332222    12356777777775


Q ss_pred             C
Q 012367          453 N  453 (465)
Q Consensus       453 s  453 (465)
                      .
T Consensus       256 ~  256 (279)
T d1q7fa_         256 S  256 (279)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.26  E-value=7.5e-05  Score=71.01  Aligned_cols=141  Identities=12%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             ceEEEEecCCC-EEEEEe-CCCeEEEEeCCCC-eEe--EEe---cCCCceEEEEEccCCCCEEEE-EeCCCcEEEEeCCC
Q 012367          311 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCN-QCL--NVF---DHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCE  381 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~-~~l--~~~---~h~~~V~~i~fsp~~~~~l~s-gs~Dg~I~iwd~~~  381 (465)
                      .+.++.|+|++ +++++. ....|.+|+.... ...  ...   ........++|+| +++++.+ .-.+++|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            46799999987 555554 3457888876433 221  111   2456789999999 8887755 44688999999865


Q ss_pred             CeEEe--------cc------------cCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeeeEeeecCc
Q 012367          382 KRVVD--------WA------------DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDR  435 (465)
Q Consensus       382 ~~~~~--------~~------------~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~~~~~~~~  435 (465)
                      +....        ..            ........+.++|||++|+++..      .+.|..|++.............. 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-  303 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-  303 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE-
Confidence            43211        00            11223567899999999988753      23477787765433222222111 


Q ss_pred             ccccCCceeeEEEee-cCC
Q 012367          436 KKTSGNKITGIQGRI-SKN  453 (465)
Q Consensus       436 ~~~~~~~It~~~f~p-~gs  453 (465)
                      ....+..-.++.|+| +|.
T Consensus       304 ~~~~G~~p~~i~~~p~~G~  322 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTT
T ss_pred             EEcCCCCccEEEecCCCCC
Confidence            122334556677776 444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.23  E-value=9.1e-06  Score=79.08  Aligned_cols=158  Identities=12%  Similarity=0.029  Sum_probs=100.4

Q ss_pred             EEEEeCCCcEEEEecCCceeeeeeecC--CCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEE
Q 012367          237 LASGGEDGVVRIWHVTSVAASCKSFTD--DGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  314 (465)
Q Consensus       237 LaSgs~Dg~V~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~  314 (465)
                      ++||+.+|.|+||++.++.........  ..............+                .. .......-..|.-....
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~v----------------l~-~~~~~~~gd~hhP~~s~   76 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEI----------------LG-GDQQYLNGDCHHPHISM   76 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHH----------------HC-SSSCCSCCCBCCCEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceE----------------Ee-cccccccCcccCCCcce
Confidence            778899999999999988776554321  110000000000000                00 00011112235455555


Q ss_pred             EEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCC--EEEEEeCCC----------------
Q 012367          315 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN--YFISGSIDG----------------  372 (465)
Q Consensus       315 l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~--~l~sgs~Dg----------------  372 (465)
                      ...+||| +| ++...+.+|.++|+.++++...+  .+...+..++|+| +++  |++..+.+.                
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccccccccccc
Confidence            6667776 44 56667899999999999988765  4677899999999 777  555555432                


Q ss_pred             -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC
Q 012367          373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT  412 (465)
Q Consensus       373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d  412 (465)
                       .+..+|..+..+.........+..+.++|+|+++++++.+
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence             2355788877776655555678899999999999988754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=2.4e-06  Score=81.32  Aligned_cols=118  Identities=11%  Similarity=-0.004  Sum_probs=81.5

Q ss_pred             cccceEEEEecCCC---EE-EEEeCCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe----------CC
Q 012367          308 HKGDVLDLAWSNSN---YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------ID  371 (465)
Q Consensus       308 h~~~V~~l~~s~~~---~l-~s~s~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs----------~D  371 (465)
                      +.+....++..+++   ++ +++..+++  |.+||..+++.+........ ..++|+| ++++|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-SLAVAGH-SGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-CEEEECT-TSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-CcceECC-CCCEEEEEcccCccccccccC
Confidence            33444444555553   22 23344554  66779999999888753222 3589999 999888754          36


Q ss_pred             CcEEEEeCCCCeEEeccc--------CCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceee
Q 012367          372 GKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKL  427 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~--------~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~  427 (465)
                      +.|++||..+++++....        .......++|+|||++|+++. .++.+.+||+.+.+...
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence            789999999988765221        122345689999999998887 47999999999887643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=0.00062  Score=60.96  Aligned_cols=213  Identities=11%  Similarity=0.003  Sum_probs=119.7

Q ss_pred             EEEEEECCCCCEEEE-EeCCCcEEEEecCCceeeeeeecCCC-Cc-ccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          225 IWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDG-GF-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       225 I~~l~fspdg~~LaS-gs~Dg~V~iWd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      =..|+++++|+..++ .+..+.|..++............... +. ......+.+.+...............      ..
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~------~~   89 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN------NQ   89 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS------CC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc------ce
Confidence            379999999995554 45667777777655432222111110 00 01111222222222211111111111      00


Q ss_pred             ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd  378 (465)
                      ............++++.+++ ++++-.....+..++..... ...+  ........+++.| +++++++...++.|..+|
T Consensus        90 ~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d  167 (260)
T d1rwia_          90 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLE  167 (260)
T ss_dssp             EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS-CEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred             eeeeeeeeeecccccccccceeEeeccccccccccccccce-eeeeeecccCCcceeeecC-CCCEeeeccccccccccc
Confidence            01111122456889998875 55555556667777765433 2222  2334567899999 889999888889999999


Q ss_pred             CCCCeEEec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367          379 VCEKRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK  452 (465)
Q Consensus       379 ~~~~~~~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g  452 (465)
                      ........+ ...-.....|++.++|+++++....+.|..++..+.....  ..     ......-+++++.++|
T Consensus       168 ~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~--~~-----~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         168 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LP-----FTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE--CC-----CCSCCCEEEEEECTTC
T ss_pred             cccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE--Ec-----cCCCCCeEEEEEeCCC
Confidence            887655543 3445668899999999888887778888888766543221  11     1123456788887765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.01  E-value=0.0005  Score=62.31  Aligned_cols=152  Identities=13%  Similarity=0.140  Sum_probs=105.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (465)
Q Consensus       221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (465)
                      +......+++.++|.++++....+.+.+++.....                                             
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~---------------------------------------------  146 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV---------------------------------------------  146 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE---------------------------------------------
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccCCce---------------------------------------------
Confidence            34456788888888877777766667766644311                                             


Q ss_pred             cceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeC-CCc
Q 012367          301 PLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI-DGK  373 (465)
Q Consensus       301 ~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~-Dg~  373 (465)
                       +..+  ..+......+++.+++ .+++....+.|++||.. ++.+..+.   .......|++.| +++++++-.. ++.
T Consensus       147 -~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~  223 (279)
T d1q7fa_         147 -LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFN  223 (279)
T ss_dssp             -EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCE
T ss_pred             -eecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcE
Confidence             1111  1344566788888876 66677778899999975 66777775   344688999999 8898887654 456


Q ss_pred             EEEEeCCCCeEEe-c--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          374 VRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       374 I~iwd~~~~~~~~-~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      |.+|+. +++.+. +  .........|++.|||.+ ++++.+++|++|....
T Consensus       224 v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         224 LTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSC
T ss_pred             EEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeee
Confidence            999985 455443 2  222346889999999965 5566899999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.01  E-value=0.00072  Score=62.52  Aligned_cols=198  Identities=9%  Similarity=0.054  Sum_probs=112.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc------ccccCCCeEEeccCCCCc-------eeEecC
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF------GSNAKEGKIKFGKKKSSH-------VPVVIP  291 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~~  291 (465)
                      -..|+|.++|..|+++...+.|...+.................      ......+.+.+.......       ......
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            4689999999988888777778888877643322211111110      001111222221100000       000000


Q ss_pred             Cceeeec-CCcceeeeccccceEEEEecCCC------EEEEEeCCCeEEEEeCCCCeEeE---Ee---c--CCCceEEEE
Q 012367          292 DEVFQIE-ESPLQELHGHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGCNQCLN---VF---D--HHNYVTCVQ  356 (465)
Q Consensus       292 ~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~------~l~s~s~DgtV~lWD~~~~~~l~---~~---~--h~~~V~~i~  356 (465)
                      ..++.+. ......+..+....+.++|++++      ++++-+..+.|..||+.....+.   .+   .  .....-.++
T Consensus       153 G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             ceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            1122221 11122222223334678887643      45566778889998875432221   12   1  223456799


Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCC
Q 012367          357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGN  423 (465)
Q Consensus       357 fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~  423 (465)
                      +.+ +++++++....+.|.+||..++.+.. +......+++++|.||++.| ++.+.+|+|..+++...
T Consensus       233 vD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         233 FDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             Eec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            998 99998888888999999998877554 33445678999999999855 55556788877776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.92  E-value=0.0014  Score=60.54  Aligned_cols=223  Identities=9%  Similarity=0.066  Sum_probs=125.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-cc-cccCCCeEEeccCCCCceeEecCCceeeec--
Q 012367          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-FG-SNAKEGKIKFGKKKSSHVPVVIPDEVFQIE--  298 (465)
Q Consensus       223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  298 (465)
                      -.+-.++|.++|++.++-...+.|..|+..+............. .. .....+.+.+......    .....++...  
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~----~~~~~i~~~~~~  115 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATEN  115 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTT
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCC----ccceeEEEEcCC
Confidence            34568999999998888778899999988765433322221111 00 0111222221110000    0001111111  


Q ss_pred             CCcceeeecc---ccceEEEEecCCCEEEEEeCC-------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE-EE
Q 012367          299 ESPLQELHGH---KGDVLDLAWSNSNYLLSCSMD-------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-IS  367 (465)
Q Consensus       299 ~~~~~~~~gh---~~~V~~l~~s~~~~l~s~s~D-------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l-~s  367 (465)
                      ...+.....+   .....++++.++|.+..+...       +.+..++...+........-...+.|+|+| +++.| ++
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~-dg~~lyva  194 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST-DEKVLWVT  194 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT-TSSEEEEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecc-ccceEEEe
Confidence            1112222111   234678889888755544432       235555554433333333334567899999 77754 66


Q ss_pred             EeCCCcEEEEeCCCC-eEE--------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc
Q 012367          368 GSIDGKVRIWGVCEK-RVV--------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~-~~~--------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~  438 (465)
                      -+..+.|..||+... ...        ...........+++.++|++.++....|.|.+||..+. + +..+.+..+...
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~-~-l~~i~~P~~~~~  272 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-P-IGQILIPGRDEG  272 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-E-EEEEECTTGGGT
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc-E-EEEEeCCCcCCC
Confidence            667889999987532 111        11122234678999999998888888999999997543 2 346666665445


Q ss_pred             cCCceeeEEEeecC
Q 012367          439 SGNKITGIQGRISK  452 (465)
Q Consensus       439 ~~~~It~~~f~p~g  452 (465)
                      ....++.+.|.+.+
T Consensus       273 ~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         273 HMLRSTHPQFIPGT  286 (319)
T ss_dssp             CSCBCCEEEECTTS
T ss_pred             cCceeeeEEEeCCC
Confidence            56678888887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.91  E-value=0.00026  Score=65.04  Aligned_cols=195  Identities=12%  Similarity=0.059  Sum_probs=112.0

Q ss_pred             hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--ecCCCCc---ccccCCCeEEeccCCCCceeEecCC
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS--FTDDGGF---GSNAKEGKIKFGKKKSSHVPVVIPD  292 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  292 (465)
                      +..+.+.+.+++|+|+|+++++...++.+.+|+..........  .......   ......+.+.+..............
T Consensus        63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1          63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence            3456678999999999999999988888888876543221111  1111110   0011122222221111111111111


Q ss_pred             -ceeee--cCCcc--eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe---EEecCCCceEEEEEccCCCCE
Q 012367          293 -EVFQI--EESPL--QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVFDHHNYVTCVQFNPIDDNY  364 (465)
Q Consensus       293 -~~~~~--~~~~~--~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l---~~~~h~~~V~~i~fsp~~~~~  364 (465)
                       ....+  .....  .........+..+.+..+.++++.+..+.|..+++......   ..+........++|.+ ++++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l  221 (302)
T d2p4oa1         143 QPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNL  221 (302)
T ss_dssp             TTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCE
T ss_pred             CCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCE
Confidence             10000  00000  01112223456777776667888888999999887654322   2233444567899999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEE--ecccCCCCeEEEEE---eeCCCEEEEEEcCC
Q 012367          365 FISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICY---IPDGKGFIVGSITG  413 (465)
Q Consensus       365 l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~V~sv~~---spdg~~l~sgs~dG  413 (465)
                      +++...++.|..++...+...  .....-...++++|   .||++.|++++..|
T Consensus       222 ~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         222 YGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             EEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            988888999999987654322  23334456899999   67888888876654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=0.00035  Score=62.69  Aligned_cols=191  Identities=9%  Similarity=-0.012  Sum_probs=110.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (465)
Q Consensus       225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (465)
                      ...|+++++|+++++....+.|++++-.+............... .....+.+.+..............      .....
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~------~~~~~  132 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG------SKTQT  132 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTT------CSSCE
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccc------cceee
Confidence            45789999999888877777777766544332211100000000 001111222211111111111111      11111


Q ss_pred             eee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367          304 ELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (465)
Q Consensus       304 ~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~  380 (465)
                      ... .-.....++++.+++ ++++...++.|..+|......... ...-.....|++.+ +++++++....+.|..++..
T Consensus       133 ~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             ECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTT
T ss_pred             eeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCC
Confidence            111 112345678888875 666777788899999875543332 23556778999999 88998888888889988876


Q ss_pred             CCeEEec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367          381 EKRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (465)
Q Consensus       381 ~~~~~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~  422 (465)
                      ....... ...-.....|+++++|..+++-..+++|+.++..+
T Consensus       212 ~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         212 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            5543332 22335678999999998877766777777666544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.0026  Score=56.29  Aligned_cols=101  Identities=9%  Similarity=0.070  Sum_probs=69.9

Q ss_pred             CcceeeeccccceEEEEecCCC-EEEEE-eCCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC---CC
Q 012367          300 SPLQELHGHKGDVLDLAWSNSN-YLLSC-SMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DG  372 (465)
Q Consensus       300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~-s~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~---Dg  372 (465)
                      .....+..+........|+|++ .++.. ...+.  +.+.|...+.. ....+........|+| ||++|+-.+.   ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~  238 (269)
T d2hqsa1         161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGS  238 (269)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECT-TSSEEEEEEEETTEE
T ss_pred             ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECC-CCCEEEEEEcCCCCc
Confidence            3344444566677788899976 44444 44444  44555555443 4445666778889999 9998875554   34


Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeC
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPD  402 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spd  402 (465)
                      .|.++++.++....+......+...+|+|-
T Consensus       239 ~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         239 VLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            688999999888888778888889999983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.42  E-value=0.017  Score=52.82  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=73.2

Q ss_pred             ceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCC-eEeE----E----ecCCCceEEEEEccCCCCEEEEEeC
Q 012367          302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN-QCLN----V----FDHHNYVTCVQFNPIDDNYFISGSI  370 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~-~~l~----~----~~h~~~V~~i~fsp~~~~~l~sgs~  370 (465)
                      +..+...-...+.|+|+|++  ++++-+..+.|..||+... ....    .    +......-.+++.+ ++++.++...
T Consensus       169 ~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~  247 (319)
T d2dg1a1         169 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYG  247 (319)
T ss_dssp             EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEET
T ss_pred             eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcC
Confidence            33333333455789999975  4566677899999987532 1111    1    11223456799999 9999999888


Q ss_pred             CCcEEEEeCCCCeEEecc-------cCCCCeEEEEEeeCCCEEEEEEc
Q 012367          371 DGKVRIWGVCEKRVVDWA-------DVRDVISAICYIPDGKGFIVGSI  411 (465)
Q Consensus       371 Dg~I~iwd~~~~~~~~~~-------~~~~~V~sv~~spdg~~l~sgs~  411 (465)
                      .+.|.+||- .++++...       ++...+++++|.|++..+++.+.
T Consensus       248 ~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         248 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999999995 56554422       23446889999998887777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.38  E-value=0.011  Score=53.66  Aligned_cols=176  Identities=12%  Similarity=0.112  Sum_probs=110.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (465)
                      ...+.++++.++|.++++ +.+| |.++|..+++.........                                     
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~~~-------------------------------------   98 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAELES-------------------------------------   98 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECSST-------------------------------------
T ss_pred             CCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeeeec-------------------------------------
Confidence            446788999888876665 4554 7788877654321110000                                     


Q ss_pred             ceeeeccccceEEEEecCCCEEEEEeC-----CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC-EEEEEeCCCcEE
Q 012367          302 LQELHGHKGDVLDLAWSNSNYLLSCSM-----DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVR  375 (465)
Q Consensus       302 ~~~~~gh~~~V~~l~~s~~~~l~s~s~-----DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~-~l~sgs~Dg~I~  375 (465)
                          ......++++.+.|+|.+..++.     .+.-.+|.+..++....+..-...+.++|+| +++ ++++-+..+.|.
T Consensus        99 ----~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          99 ----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             ----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEE
T ss_pred             ----CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecC-CCceEEEeecccceee
Confidence                00123567788888875544432     2345667777777666665445568899999 666 455666678899


Q ss_pred             EEeCCCC------e---EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367          376 IWGVCEK------R---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (465)
Q Consensus       376 iwd~~~~------~---~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~  446 (465)
                      .|++...      +   .....+.......+++..+|++.++.-..|.|..||..+..+  ..+.+..      ..+|++
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~--~~i~lP~------~~~T~~  245 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHI--ARYEVPG------KQTTCP  245 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEE--EEEECSC------SBEEEE
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEe--eEecCCC------CceEEE
Confidence            8887421      1   122334556688899999998877777788999999765433  3444433      357777


Q ss_pred             EEe
Q 012367          447 QGR  449 (465)
Q Consensus       447 ~f~  449 (465)
                      +|-
T Consensus       246 ~FG  248 (295)
T d2ghsa1         246 AFI  248 (295)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.37  E-value=0.018  Score=52.54  Aligned_cols=111  Identities=10%  Similarity=0.037  Sum_probs=70.5

Q ss_pred             ceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CC----CceEEEEEccCCCCEEEEEeC--------------
Q 012367          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HH----NYVTCVQFNPIDDNYFISGSI--------------  370 (465)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~----~~V~~i~fsp~~~~~l~sgs~--------------  370 (465)
                      ....+++.+++ .++.+.....|...|........... ..    ...+.+++.| ++++.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            35678999875 67777777778888987553222111 11    1357899999 8998887532              


Q ss_pred             -CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-----EEEEEEcCCcEEEEEecCC
Q 012367          371 -DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-----GFIVGSITGTCHFYKASGN  423 (465)
Q Consensus       371 -Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-----~l~sgs~dG~v~iwd~~~~  423 (465)
                       .|.|..++. .++.......-...+.++|+|++.     ++++-+..+.|..|++...
T Consensus       151 ~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~  208 (314)
T d1pjxa_         151 KFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             SCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             CCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence             233444443 334443333344567899999875     4445566888999987644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0048  Score=60.12  Aligned_cols=117  Identities=10%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             cceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCce-----------------EEEEEccCCCCEEEEEe
Q 012367          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TCVQFNPIDDNYFISGS  369 (465)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V-----------------~~i~fsp~~~~~l~sgs  369 (465)
                      ..+....|+|+| .|+-. .++.|.+.+...+..++...  ....|                 ..+-|+| |+++||...
T Consensus       114 ~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~  191 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAA  191 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEE
T ss_pred             cccceeeeccCCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEE
Confidence            345557889987 44443 46778888887766554432  11111                 4677999 999988765


Q ss_pred             CC-CcEE---------------------------------EEeCCCCeEEe-------cccCCCCeEEEEEeeCCCEEEE
Q 012367          370 ID-GKVR---------------------------------IWGVCEKRVVD-------WADVRDVISAICYIPDGKGFIV  408 (465)
Q Consensus       370 ~D-g~I~---------------------------------iwd~~~~~~~~-------~~~~~~~V~sv~~spdg~~l~s  408 (465)
                      .| ..|.                                 ++|+.++....       .......+..+.|+|+++.++.
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~  271 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEE
Confidence            33 3333                                 33433222110       0111223678999999986665


Q ss_pred             EEc-C---CcEEEEEecCCceeee
Q 012367          409 GSI-T---GTCHFYKASGNDLKLE  428 (465)
Q Consensus       409 gs~-d---G~v~iwd~~~~~~~~~  428 (465)
                      ... +   ..+.++|..+++....
T Consensus       272 ~~nR~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         272 WLNRAQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEE
T ss_pred             EEccccccceEEEEcCCCCcEEEE
Confidence            443 1   3577888888776543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.23  E-value=0.011  Score=51.94  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             CCCceEEEEEccCCCCEEEEEeCC--CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367          348 HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (465)
Q Consensus       348 h~~~V~~i~fsp~~~~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~  425 (465)
                      +........+.+ + ..+.....+  ..|.++|+.++....+..+.. .....|+|||+.|+. ..+|.++++|+.+++.
T Consensus       190 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         190 MSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEE-EETTEEEEECTTTCCE
T ss_pred             Cccccceeeeec-c-ccceecccccccceEEEeCCCCceEEeecCCC-cccccCcCCCCEEEE-EeCCEEEEEECCCCCE
Confidence            444445555554 3 233333333  357777888776655444332 233468999998776 4578899999988876


Q ss_pred             e
Q 012367          426 K  426 (465)
Q Consensus       426 ~  426 (465)
                      .
T Consensus       266 ~  266 (281)
T d1k32a2         266 E  266 (281)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00035  Score=68.55  Aligned_cols=144  Identities=10%  Similarity=0.076  Sum_probs=94.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEe---------CCCcEEEEeCCC
Q 012367          315 LAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS---------IDGKVRIWGVCE  381 (465)
Q Consensus       315 l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs---------~Dg~I~iwd~~~  381 (465)
                      ..|.+++.++.-..+|.|.+||+.+++....+.    ....+....|+| |+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            357777644555667899999998887654443    223577888999 999887764         356789999998


Q ss_pred             CeEEeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc-----------CCceeeEE
Q 012367          382 KRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-----------GNKITGIQ  447 (465)
Q Consensus       382 ~~~~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~It~~~  447 (465)
                      +....+..   ....+....|+|||+.||-.. ++.+.+.+..++.............+..           ...-.++.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            87665432   344567789999999988765 6788888877654322221111100000           01225778


Q ss_pred             EeecCCccceeee
Q 012367          448 GRISKNYDNFRRF  460 (465)
Q Consensus       448 f~p~gs~d~~~~~  460 (465)
                      |+|+|.+--+..+
T Consensus       180 WSPDgk~iaf~~~  192 (465)
T d1xfda1         180 WSPDGTRLAYAAI  192 (465)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCeEEEEEe
Confidence            9999988665443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.07  E-value=0.019  Score=51.91  Aligned_cols=111  Identities=15%  Similarity=0.070  Sum_probs=78.3

Q ss_pred             cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCC----CcEEEEeCC
Q 012367          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVC  380 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~D----g~I~iwd~~  380 (465)
                      ..+.++++.+++.|+.++.+ -+.++|..+++......     ....++.+.+.| ++++.++....    +.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence            45678888888766666665 48889999887654432     123578999999 88877765432    345677777


Q ss_pred             CCeEEecccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecC
Q 012367          381 EKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG  422 (465)
Q Consensus       381 ~~~~~~~~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~  422 (465)
                      .+++......-...+.++|+|+++.++.+ +..+.|..|++..
T Consensus       137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence            77766555545567889999999866554 5578898888753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.39  E-value=0.0095  Score=52.48  Aligned_cols=93  Identities=8%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             ecCC--C-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-CC-----cEEEEeCCCCeEEec
Q 012367          317 WSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG-----KVRIWGVCEKRVVDW  387 (465)
Q Consensus       317 ~s~~--~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg-----~I~iwd~~~~~~~~~  387 (465)
                      .+|+  | .++-. .++.|.+.|+.+++..+...+...+...+|+| ||+.|+-... ++     .|.+++..++....+
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            3455  4 44433 34568888999888766667778889999999 9998875532 22     477888888877664


Q ss_pred             ccCC-------CCeEEEEEeeCCCEEEEEEc
Q 012367          388 ADVR-------DVISAICYIPDGKGFIVGSI  411 (465)
Q Consensus       388 ~~~~-------~~V~sv~~spdg~~l~sgs~  411 (465)
                      ....       .....+.|+|||+.|+....
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEc
Confidence            3322       34567899999998887543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.89  E-value=0.16  Score=47.64  Aligned_cols=90  Identities=9%  Similarity=0.033  Sum_probs=61.8

Q ss_pred             eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC--------------------------------------
Q 012367          331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------------------------------------  372 (465)
Q Consensus       331 tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg--------------------------------------  372 (465)
                      ++.++|..+++......-......+.++| +++++++.+.+.                                      
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            46678888888877776556677889999 889888877542                                      


Q ss_pred             cEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec
Q 012367          373 KVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS  421 (465)
Q Consensus       373 ~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~  421 (465)
                      .+.+-|.+..   .+..+.........+..+|||+++++++. +.++.++|++
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            1233333221   12222333345667899999999887765 8999999986

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.63  E-value=0.33  Score=44.41  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=62.5

Q ss_pred             EEEEEe---CCCeEEEEeCCCC--eE--eEEecCC--CceEEEEEccCCCCEEEEEe--C-C------------CcEEEE
Q 012367          322 YLLSCS---MDKTVRMWQVGCN--QC--LNVFDHH--NYVTCVQFNPIDDNYFISGS--I-D------------GKVRIW  377 (465)
Q Consensus       322 ~l~s~s---~DgtV~lWD~~~~--~~--l~~~~h~--~~V~~i~fsp~~~~~l~sgs--~-D------------g~I~iw  377 (465)
                      +|+...   ...+|-+|++...  +.  +.++.+.  ...+.|++.. ++.+++|-.  . +            +...+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            455543   4567888887432  22  2223332  3578888888 888888831  1 0            223444


Q ss_pred             eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCc
Q 012367          378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND  424 (465)
Q Consensus       378 d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~  424 (465)
                      ....+........-...+.|+++||+++|+++. ..++|+.|++....
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            444444333333445689999999998776665 47899999997553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.78  E-value=0.28  Score=48.42  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCe--EEEEEeeCCC-E
Q 012367          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI--SAICYIPDGK-G  405 (465)
Q Consensus       329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V--~sv~~spdg~-~  405 (465)
                      .|.|.-+|+.+++.+..+....++..-.... .+.++++|+.||.++.+|..+|+++-.......+  .-+.|..+|+ +
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4789999999999999886554443222233 6778888999999999999999988643333322  2267788996 4


Q ss_pred             EEEE
Q 012367          406 FIVG  409 (465)
Q Consensus       406 l~sg  409 (465)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.50  E-value=2.3  Score=38.22  Aligned_cols=112  Identities=13%  Similarity=0.176  Sum_probs=68.6

Q ss_pred             EEEecCCC-EEEEEeCC-CeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCC------CcEEEEeCCCCe
Q 012367          314 DLAWSNSN-YLLSCSMD-KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKR  383 (465)
Q Consensus       314 ~l~~s~~~-~l~s~s~D-gtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~~~  383 (465)
                      ..++.+++ +++.|+.+ .++.+||..+..-...-.  ....-.+++..+ ++++++.|+.+      ..+.+||..+..
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence            44566666 45555444 589999998776433221  222233556666 88999998753      368999998876


Q ss_pred             EEecccCC---------------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367          384 VVDWADVR---------------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (465)
Q Consensus       384 ~~~~~~~~---------------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~  426 (465)
                      ........               ..-..+...++|+.++.+...+.+.+++.......
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            54321100               01112334467888888888888888887776554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.82  E-value=1.9  Score=40.23  Aligned_cols=98  Identities=11%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             EEEecC---CC--EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEE--ccCCCCEEEEEeCCC------------
Q 012367          314 DLAWSN---SN--YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQF--NPIDDNYFISGSIDG------------  372 (465)
Q Consensus       314 ~l~~s~---~~--~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~f--sp~~~~~l~sgs~Dg------------  372 (465)
                      .+.+..   ||  .++.-..+..|.+-|+.+.++.+..  .....+..+..  .| +-.|++.++.+.            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p-~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCC-CeEEEEccCccccccCCCCccccc
Confidence            455544   44  3455667899999999999987755  34445665555  34 556777766533            


Q ss_pred             ------cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC
Q 012367          373 ------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT  412 (465)
Q Consensus       373 ------~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d  412 (465)
                            .+.++|..+.++............+.++|+|+++++.+.+
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence                  3677899888877655555667789999999999998753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.67  E-value=0.74  Score=45.14  Aligned_cols=80  Identities=8%  Similarity=-0.071  Sum_probs=55.5

Q ss_pred             CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeE--EEEEeeCCC-EE
Q 012367          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGK-GF  406 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~--sv~~spdg~-~l  406 (465)
                      |.|.-+|+.+++.+..+.+..+..+-...- .+.++++|+.|+.++.+|..+++.+-.......+.  -+.|..||+ ++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            679999999999988876444332212222 46788889999999999999999886444333333  367778886 44


Q ss_pred             EEEE
Q 012367          407 IVGS  410 (465)
Q Consensus       407 ~sgs  410 (465)
                      ++..
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.0012  Score=46.20  Aligned_cols=64  Identities=20%  Similarity=0.361  Sum_probs=42.3

Q ss_pred             ccccccCCccceeccccccccCcceeeeecccc-cCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhcccc
Q 012367          105 CFDREMDSEANCMVDELEQDQMNECVVTLEGES-NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVE  178 (465)
Q Consensus       105 ~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  178 (465)
                      .+.|+.+++|.+|++||..++..+.+.++..+. .........      +    ....+++.|..+++++++.++
T Consensus         2 Lt~rQ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~------k----y~glLEKKWtSViRLQkKImd   66 (76)
T d1uuja_           2 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDK------K----YAGLLEKKWTSVIRLQKKVME   66 (76)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHH------H----HTTHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhh------h----hcCcchhHHHHHHHHHHHHHH
Confidence            467889999999999998888888887777665 221111111      1    234577777777777766443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.69  E-value=0.96  Score=41.01  Aligned_cols=95  Identities=15%  Similarity=0.273  Sum_probs=66.3

Q ss_pred             eEEEEeCCCCeEe--EEe--cCCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCC
Q 012367          331 TVRMWQVGCNQCL--NVF--DHHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD--VRDVISAICYIPDG  403 (465)
Q Consensus       331 tV~lWD~~~~~~l--~~~--~h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg  403 (465)
                      .+.+||..+++-.  ...  .+.......++.+ ++.+++.|+.+ ..+.+||..+........  ....-.+++..+||
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            3789999887532  222  3444445667788 99999998765 589999998877655322  22234567778899


Q ss_pred             CEEEEEEcC------CcEEEEEecCCcee
Q 012367          404 KGFIVGSIT------GTCHFYKASGNDLK  426 (465)
Q Consensus       404 ~~l~sgs~d------G~v~iwd~~~~~~~  426 (465)
                      +.++.|+.+      ..+.+||..+++..
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ceeeeccccccccccceeeeecCCCCcee
Confidence            999998753      36889999887653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.60  E-value=3.4  Score=38.70  Aligned_cols=35  Identities=14%  Similarity=0.099  Sum_probs=27.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 012367          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA  256 (465)
Q Consensus       222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~  256 (465)
                      -..-++|+|.|+|++|++--..|.|++++..++..
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            34677999999999888876679999988766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.79  E-value=2.1  Score=41.99  Aligned_cols=78  Identities=8%  Similarity=0.020  Sum_probs=54.5

Q ss_pred             CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCe--EEEEEeeCCC-EE
Q 012367          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI--SAICYIPDGK-GF  406 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V--~sv~~spdg~-~l  406 (465)
                      |.|.-||+.+++.+....+...+..-...- .+.+++.|+.||.++.+|..+++++-.......+  .-+.|..+|+ ++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            689999999999988876544433322333 5778888999999999999999988643332222  2256777886 44


Q ss_pred             EE
Q 012367          407 IV  408 (465)
Q Consensus       407 ~s  408 (465)
                      ++
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.05  E-value=5.1  Score=34.31  Aligned_cols=200  Identities=8%  Similarity=-0.036  Sum_probs=103.2

Q ss_pred             hccCCCcEEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeecCCCCcc--ccc-CCCeEEeccCCCCceeEecCCc
Q 012367          218 IQAHKGCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFG--SNA-KEGKIKFGKKKSSHVPVVIPDE  293 (465)
Q Consensus       218 l~~H~~~I~~l~fspdg~~LaSg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~  293 (465)
                      +..+...|.+|+|.+..+.|+-+ ..++.|+..++.................  ... ..+.+.+.......+....   
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~---  107 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK---  107 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE---
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEe---
Confidence            33455568889999877766554 4567788888775443322211111100  111 1112222222222221111   


Q ss_pred             eeeecCCcceeee-ccccceEEEEecCC-CEEEEEe-CCCeEEEE--eCCCCeEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367          294 VFQIEESPLQELH-GHKGDVLDLAWSNS-NYLLSCS-MDKTVRMW--QVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS  367 (465)
Q Consensus       294 ~~~~~~~~~~~~~-gh~~~V~~l~~s~~-~~l~s~s-~DgtV~lW--D~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~s  367 (465)
                         +.......+. .....+..++..|. +++.-.. ..+..+||  ++......... ..-.....+++.+.+++++.+
T Consensus       108 ---~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         108 ---MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             ---TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             ---cCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEE
Confidence               1222222222 23356788999875 5554332 22333444  55433222222 233467899998844444455


Q ss_pred             EeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCce
Q 012367          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL  425 (465)
Q Consensus       368 gs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~  425 (465)
                      -...+.|...++................+|++.  +..|.... ..+.|...|..+++.
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             eCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            556788999998776544332222335677775  44555544 567888888876644

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.87  E-value=0.55  Score=46.08  Aligned_cols=79  Identities=15%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEE--EEEeeCCC-EE
Q 012367          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA--ICYIPDGK-GF  406 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~s--v~~spdg~-~l  406 (465)
                      |.+.-||+.+++.+..+.+..+...=...- .+.++++|+.|+.++.+|..+++.+-.......+.+  +.|..+|+ ++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578899999999998886544332212222 677888999999999999999998864333333322  56677887 44


Q ss_pred             EEE
Q 012367          407 IVG  409 (465)
Q Consensus       407 ~sg  409 (465)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.83  E-value=4.8  Score=33.59  Aligned_cols=110  Identities=12%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec----------CCCceEEEEEccCCCCEEEEEeC-CCcEEEEe
Q 012367          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----------HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWG  378 (465)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~----------h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd  378 (465)
                      -.|.+++....+.+.+|+....+.+|-+..|+..+.-.          ..+.|..+.|-..+..-|.++.. .|.++|++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            45777787777888888888888899888776543322          23445555543324444555555 78888887


Q ss_pred             CCCCeEE-----------------------eccc------------------CCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367          379 VCEKRVV-----------------------DWAD------------------VRDVISAICYIPDGKGFIVGSITGTCHF  417 (465)
Q Consensus       379 ~~~~~~~-----------------------~~~~------------------~~~~V~sv~~spdg~~l~sgs~dG~v~i  417 (465)
                      ...+.+-                       +...                  ....|+-+-+.|+++.++.+-.||.-++
T Consensus       184 pkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~l  263 (313)
T d2hu7a1         184 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV  263 (313)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred             CCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhe
Confidence            7554311                       1100                  0112455668999999999999999998


Q ss_pred             EE
Q 012367          418 YK  419 (465)
Q Consensus       418 wd  419 (465)
                      |.
T Consensus       264 F~  265 (313)
T d2hu7a1         264 FI  265 (313)
T ss_dssp             EE
T ss_pred             ee
Confidence            85

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.75  E-value=1.8  Score=41.99  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      |.|.-||+.+++++-.........+-...-.|.++++|+.||.++.||..+++...+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence            467788999988776444444333333444677888999999999999999988654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.93  E-value=1.4  Score=42.95  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=38.6

Q ss_pred             cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      .|.-||+.+++++-..........-..+-.|..+++|+.||.++.||..+++...+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~  513 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE
Confidence            46677777777765333333322223344677888999999999999999988544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.91  E-value=0.87  Score=44.45  Aligned_cols=80  Identities=8%  Similarity=0.080  Sum_probs=55.6

Q ss_pred             CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeE--EEEEeeCCC-EE
Q 012367          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGK-GF  406 (465)
Q Consensus       330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~--sv~~spdg~-~l  406 (465)
                      |.+.-||+.+++.+..+....+...-.+.- .+.+++.|+.||.++.+|..+++++-.......+.  -+.|..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            678889999999998886544433222232 56788889999999999999999886433333322  256777886 44


Q ss_pred             EEEE
Q 012367          407 IVGS  410 (465)
Q Consensus       407 ~sgs  410 (465)
                      ++.+
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.79  E-value=1.9  Score=41.92  Aligned_cols=57  Identities=7%  Similarity=-0.029  Sum_probs=38.2

Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      |.|.-+|+.+++++-.........+-...-.+..+++|+.||.++.||.++++...+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~  500 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            457778888887764333222222222233566888899999999999999988654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=6.4  Score=33.67  Aligned_cols=115  Identities=11%  Similarity=0.035  Sum_probs=75.4

Q ss_pred             ceEEEEec--CCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEe
Q 012367          311 DVLDLAWS--NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVD  386 (465)
Q Consensus       311 ~V~~l~~s--~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~  386 (465)
                      .+.+|++.  .+++..+-...+.|.+.++......... ........++++|..+.++.+.. ..+.|.-.++.......
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            34456665  4446666677789999999866554444 34567899999995555555532 23467667776544433


Q ss_pred             cc-cCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCce
Q 012367          387 WA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL  425 (465)
Q Consensus       387 ~~-~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~  425 (465)
                      +. ..-...+++++.+.++.|..+. ..+.|...++.+...
T Consensus       158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence            32 3335678999999887776664 468888888876543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.54  E-value=7.7  Score=33.12  Aligned_cols=104  Identities=6%  Similarity=-0.049  Sum_probs=70.1

Q ss_pred             ccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367          307 GHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (465)
Q Consensus       307 gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~  383 (465)
                      .+...+..|+|... + .+.+-..++.|+..++.......... ....+..+++....+++..+-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            34456778888854 4 44455667889998887655444443 335788999987556666666677899999987654


Q ss_pred             EEecc-cCCCCeEEEEEeeCCCEEEEEE
Q 012367          384 VVDWA-DVRDVISAICYIPDGKGFIVGS  410 (465)
Q Consensus       384 ~~~~~-~~~~~V~sv~~spdg~~l~sgs  410 (465)
                      ..... ..-..+..++.+|...++....
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~  140 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTD  140 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEee
Confidence            33322 2335689999999777666544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.33  E-value=2.1  Score=41.96  Aligned_cols=57  Identities=12%  Similarity=0.082  Sum_probs=40.5

Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      |.|.-||+.+++++-...+...+.+-..+..|..+++|+.||.++.||..+++...+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~  509 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE
Confidence            467788888887764333333333333444677888899999999999999988654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.76  E-value=4.6  Score=37.32  Aligned_cols=112  Identities=12%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             cccceEEEEecCCC-E-EEEEeCCC----eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC----------
Q 012367          308 HKGDVLDLAWSNSN-Y-LLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----------  371 (465)
Q Consensus       308 h~~~V~~l~~s~~~-~-l~s~s~Dg----tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D----------  371 (465)
                      +.-.+...+++|++ + +++-+.+|    +|++.|+.+++.+...-.......++|.+ ++..|+-...+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            33344556778886 3 33444444    69999999998765321111225678999 77766544322          


Q ss_pred             ------CcEEEEeCCCCe---EEecc--cCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEe
Q 012367          372 ------GKVRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSI---TGTCHFYKA  420 (465)
Q Consensus       372 ------g~I~iwd~~~~~---~~~~~--~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~  420 (465)
                            ..|..+.+.+..   .+.+.  .....+..+..++++++++....   ++...+|-+
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence                  257777776542   22222  23345677888999998875443   334445533

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.66  E-value=11  Score=33.06  Aligned_cols=107  Identities=12%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-eEEe-ccc----
Q 012367          316 AWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVD-WAD----  389 (465)
Q Consensus       316 ~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~-~~~~-~~~----  389 (465)
                      -.+|...+++--...++.++|+++.+.++.+....+|.--.|-  +.+.|+-.. +..|+-|++... .+.. +..    
T Consensus        69 IMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L  145 (327)
T d1utca2          69 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  145 (327)
T ss_dssp             EECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred             hcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccc
Confidence            3456554443333678999999999999999988888877886  466666655 567999999532 2222 222    


Q ss_pred             CCCCeEEEEEeeCCCEEEEEE-------cCCcEEEEEecCCce
Q 012367          390 VRDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDL  425 (465)
Q Consensus       390 ~~~~V~sv~~spdg~~l~sgs-------~dG~v~iwd~~~~~~  425 (465)
                      ....|..-..+++.++++..+       -.|.+.+|..+.+.-
T Consensus       146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s  188 (327)
T d1utca2         146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS  188 (327)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE
T ss_pred             cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC
Confidence            234577777788888876654       257788888775533

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.51  E-value=3.5  Score=40.04  Aligned_cols=57  Identities=16%  Similarity=0.077  Sum_probs=41.6

Q ss_pred             CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (465)
Q Consensus       372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~  428 (465)
                      |.|.-+|+.++++.-.......+.+-..+..|..+++|+.||.++.||..+++...+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~  522 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE
Confidence            567778888888775444333443333455777888999999999999999988654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.10  E-value=8.3  Score=35.07  Aligned_cols=98  Identities=9%  Similarity=-0.013  Sum_probs=58.4

Q ss_pred             ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEE------ecCCCceEEEEEccCCCCEEEEEeCCCcEEEE-eCCC
Q 012367          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW-GVCE  381 (465)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~------~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw-d~~~  381 (465)
                      ..++.++.++|.. ++....++.+-++++..+.....      +.-...+.|++|++ .+..++++..+ ...+- ++..
T Consensus       125 ~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~-~~q~k~~i~~  201 (381)
T d1xipa_         125 EKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNG-EMEKQFEFSL  201 (381)
T ss_dssp             SSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETT-EEEEEEEECC
T ss_pred             cccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCC-ceeeccCCCC
Confidence            4567888888754 56667789999999988754322      23456788888888 77777776422 22221 1111


Q ss_pred             CeEEe-cccCCCCeEEEEEeeCCCEEEEE
Q 012367          382 KRVVD-WADVRDVISAICYIPDGKGFIVG  409 (465)
Q Consensus       382 ~~~~~-~~~~~~~V~sv~~spdg~~l~sg  409 (465)
                      ...+. .......|.+|.|-.+..++++-
T Consensus       202 ~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         202 PSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             CHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            11111 11234467888888666665554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=80.04  E-value=20  Score=31.98  Aligned_cols=120  Identities=10%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             eEEEEeCC-CCeEeEEecC--------CCceEEEEE--ccCCCC-EEEEEeCCCcEEEEeCC---CC----eEEecccCC
Q 012367          331 TVRMWQVG-CNQCLNVFDH--------HNYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWADVR  391 (465)
Q Consensus       331 tV~lWD~~-~~~~l~~~~h--------~~~V~~i~f--sp~~~~-~l~sgs~Dg~I~iwd~~---~~----~~~~~~~~~  391 (465)
                      +|.+|.+. ....+..+..        ...|+.+|+  +|.++. +++....+|.+..|.+.   .+    ..+......
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            67778764 2333333321        123555665  775565 56667778999888762   22    233445566


Q ss_pred             CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE-eeecCcccccCCceeeEEEeec
Q 012367          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQGRIS  451 (465)
Q Consensus       392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~It~~~f~p~  451 (465)
                      ..+..+.+.+....|.++-.+.-+..++.......... +.... ...-..-+.|+.+-..
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~-g~~l~~D~EGlaiy~~  239 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTPDIEGLTIYYA  239 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECS-SSSCCSCEEEEEEEEC
T ss_pred             CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeeccc-CccccCCccccEEEEc
Confidence            78999999999999999988876666666533322221 21111 1112346777766544